Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778000 | XP_003616135.1 | 98.086 | 209 | 3 | 1 | 1 | 208 | 1 | 209 | 2.85e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778000 | sp|C6TCJ2|CSPLA_SOYBN | 68.421 | 209 | 61 | 3 | 1 | 208 | 2 | 206 | 4.88e-97 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778000 | G7KFQ6 | 98.086 | 209 | 3 | 1 | 1 | 208 | 1 | 209 | 1.36e-145 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030740 | Msa0778000 | 0.800195 | 1.615329e-48 | -8.615850e-47 |
| Msa0094060 | Msa0778000 | 0.833953 | 3.965964e-56 | -8.615850e-47 |
| Msa0606250 | Msa0778000 | 0.800636 | 1.313536e-48 | -8.615850e-47 |
| Msa0623760 | Msa0778000 | 0.803897 | 2.798880e-49 | -8.615850e-47 |
| Msa0643540 | Msa0778000 | 0.804113 | 2.524401e-49 | -8.615850e-47 |
| Msa0648180 | Msa0778000 | 0.803108 | 4.080430e-49 | -8.615850e-47 |
| Msa0683650 | Msa0778000 | 0.812768 | 3.590735e-51 | -8.615850e-47 |
| Msa0700910 | Msa0778000 | 0.803513 | 3.362742e-49 | -8.615850e-47 |
| Msa0702120 | Msa0778000 | 0.807647 | 4.564338e-50 | -8.615850e-47 |
| Msa0712070 | Msa0778000 | 0.826168 | 3.145420e-54 | -8.615850e-47 |
| Msa0778000 | Msa0814760 | 0.812048 | 5.157911e-51 | -8.615850e-47 |
| Msa0778000 | Msa0815340 | 0.872119 | 4.061636e-67 | -8.615850e-47 |
| Msa0778000 | Msa0830410 | 0.806575 | 7.694744e-50 | -8.615850e-47 |
| Msa0778000 | Msa0855560 | 0.879603 | 1.088572e-69 | -8.615850e-47 |
| Msa0778000 | Msa0856790 | 0.800097 | 1.690803e-48 | -8.615850e-47 |
| Msa0778000 | Msa0868140 | 0.803959 | 2.717251e-49 | -8.615850e-47 |
| Msa0778000 | Msa0880520 | 0.806663 | 7.375553e-50 | -8.615850e-47 |
| Msa0778000 | Msa0959710 | 0.809593 | 1.752204e-50 | -8.615850e-47 |
| Msa0778000 | Msa1056520 | 0.807372 | 5.219776e-50 | -8.615850e-47 |
| Msa0778000 | Msa1067430 | 0.802750 | 4.837020e-49 | -8.615850e-47 |
| Msa0778000 | Msa1129320 | 0.802371 | 5.792454e-49 | -8.615850e-47 |
| Msa0778000 | Msa1129920 | 0.808201 | 3.478414e-50 | -8.615850e-47 |
| Msa0778000 | Msa1149760 | 0.801364 | 9.324920e-49 | -8.615850e-47 |
| Msa0778000 | Msa1150170 | 0.822867 | 1.882861e-53 | -8.615850e-47 |
| Msa0778000 | Msa1173020 | 0.813294 | 2.752892e-51 | -8.615850e-47 |
| Msa0778000 | Msa1178470 | 0.836428 | 9.410831e-57 | -8.615850e-47 |
| Msa0778000 | Msa1183730 | 0.817723 | 2.844323e-52 | -8.615850e-47 |
| Msa0778000 | Msa1183850 | 0.806366 | 8.519838e-50 | -8.615850e-47 |
| Msa0778000 | Msa1207280 | 0.800862 | 1.181246e-48 | -8.615850e-47 |
| Msa0778000 | Msa1208510 | 0.805522 | 1.281676e-49 | -8.615850e-47 |
| Msa0778000 | Msa1217170 | 0.809322 | 2.003939e-50 | -8.615850e-47 |
| Msa0778000 | Msa1224140 | 0.819070 | 1.408649e-52 | -8.615850e-47 |
| Msa0778000 | Msa1232860 | 0.819291 | 1.254419e-52 | -8.615850e-47 |
| Msa0778000 | Msa1249740 | 0.805602 | 1.233440e-49 | -8.615850e-47 |
| Msa0778000 | Msa1254210 | 0.808483 | 3.029717e-50 | -8.615850e-47 |
| Msa0778000 | Msa1261340 | 0.814649 | 1.383717e-51 | -8.615850e-47 |
| Msa0778000 | Msa1261360 | 0.803945 | 2.735792e-49 | -8.615850e-47 |
| Msa0778000 | Msa1261370 | 0.815535 | 8.794705e-52 | -8.615850e-47 |
| Msa0778000 | Msa1261400 | 0.809512 | 1.823869e-50 | -8.615850e-47 |
| Msa0778000 | Msa1262630 | 0.814236 | 1.707428e-51 | -8.615850e-47 |
| Msa0778000 | Msa1263460 | 0.805080 | 1.586141e-49 | -8.615850e-47 |
| Msa0778000 | Msa1274740 | 0.813982 | 1.942209e-51 | -8.615850e-47 |
| Msa0778000 | Msa1275290 | 0.814808 | 1.275676e-51 | -8.615850e-47 |
| Msa0778000 | Msa1306540 | 0.822892 | 1.857900e-53 | -8.615850e-47 |
| Msa0778000 | Msa1312730 | 0.809107 | 2.228201e-50 | -8.615850e-47 |
| Msa0778000 | Msa1313460 | 0.847256 | 1.297027e-59 | -8.615850e-47 |
| Msa0778000 | Msa1330240 | 0.815512 | 8.898513e-52 | -8.615850e-47 |
| Msa0778000 | Msa1351370 | 0.806823 | 6.822403e-50 | -8.615850e-47 |
| Msa0778000 | Msa1369860 | 0.809809 | 1.574667e-50 | -8.615850e-47 |
| Msa0778000 | Msa1375400 | 0.830960 | 2.188322e-55 | -8.615850e-47 |
| Msa0778000 | Msa1387650 | 0.806462 | 8.132192e-50 | -8.615850e-47 |
| Msa0778000 | Msa1407610 | 0.805135 | 1.544683e-49 | -8.615850e-47 |
| Msa0778000 | Msa1415250 | 0.806128 | 9.558785e-50 | -8.615850e-47 |
| Msa0778000 | Msa1421810 | 0.802877 | 4.554580e-49 | -8.615850e-47 |
| Msa0778000 | Msa1424240 | 0.819536 | 1.102927e-52 | -8.615850e-47 |
| Msa0778000 | Msa1429390 | 0.823579 | 1.283851e-53 | -8.615850e-47 |
| Msa0778000 | Msa1430940 | 0.804883 | 1.744444e-49 | -8.615850e-47 |
| Msa0778000 | Msa1437690 | 0.806594 | 7.627140e-50 | -8.615850e-47 |
| Msa0122540 | Msa0778000 | 0.802473 | 5.517230e-49 | -8.615850e-47 |
| Msa0181380 | Msa0778000 | 0.800853 | 1.186013e-48 | -8.615850e-47 |
| Msa0184070 | Msa0778000 | 0.805108 | 1.565500e-49 | -8.615850e-47 |
| Msa0187560 | Msa0778000 | 0.810524 | 1.104259e-50 | -8.615850e-47 |
| Msa0224700 | Msa0778000 | 0.839353 | 1.666819e-57 | -8.615850e-47 |
| Msa0392410 | Msa0778000 | 0.816217 | 6.197046e-52 | -8.615850e-47 |
| Msa0392450 | Msa0778000 | 0.813178 | 2.919111e-51 | -8.615850e-47 |
| Msa0392480 | Msa0778000 | 0.817978 | 2.491450e-52 | -8.615850e-47 |
| Msa0398990 | Msa0778000 | 0.818108 | 2.327767e-52 | -8.615850e-47 |
| Msa0418480 | Msa0778000 | 0.806825 | 6.814858e-50 | -8.615850e-47 |
| Msa0421790 | Msa0778000 | 0.829269 | 5.658466e-55 | -8.615850e-47 |
| Msa0431800 | Msa0778000 | 0.804896 | 1.733330e-49 | -8.615850e-47 |
| Msa0436310 | Msa0778000 | 0.818069 | 2.376008e-52 | -8.615850e-47 |
| Msa0450780 | Msa0778000 | 0.831842 | 1.327437e-55 | -8.615850e-47 |
| Msa0450860 | Msa0778000 | 0.815259 | 1.013269e-51 | -8.615850e-47 |
| Msa0457750 | Msa0778000 | 0.803239 | 3.832401e-49 | -8.615850e-47 |
| Msa0465860 | Msa0778000 | 0.827038 | 1.950062e-54 | -8.615850e-47 |
| Msa0467890 | Msa0778000 | 0.822230 | 2.647802e-53 | -8.615850e-47 |
| Msa0467970 | Msa0778000 | 0.821677 | 3.555055e-53 | -8.615850e-47 |
| Msa0481620 | Msa0778000 | 0.804190 | 2.433070e-49 | -8.615850e-47 |
| Msa0253410 | Msa0778000 | 0.803296 | 3.730909e-49 | -8.615850e-47 |
| Msa0260960 | Msa0778000 | 0.808347 | 3.237919e-50 | -8.615850e-47 |
| Msa0265780 | Msa0778000 | 0.831441 | 1.666420e-55 | -8.615850e-47 |
| Msa0268160 | Msa0778000 | 0.820003 | 8.630580e-53 | -8.615850e-47 |
| Msa0285710 | Msa0778000 | 0.830336 | 3.110601e-55 | -8.615850e-47 |
| Msa0290040 | Msa0778000 | 0.800461 | 1.425740e-48 | -8.615850e-47 |
| Msa0290950 | Msa0778000 | 0.805783 | 1.130043e-49 | -8.615850e-47 |
| Msa0290970 | Msa0778000 | 0.805831 | 1.103712e-49 | -8.615850e-47 |
| Msa0303780 | Msa0778000 | 0.843888 | 1.062105e-58 | -8.615850e-47 |
| Msa0304870 | Msa0778000 | 0.803700 | 3.076295e-49 | -8.615850e-47 |
| Msa0335740 | Msa0778000 | 0.802487 | 5.480084e-49 | -8.615850e-47 |
| Msa0341260 | Msa0778000 | 0.805992 | 1.021400e-49 | -8.615850e-47 |
| Msa0358230 | Msa0778000 | 0.821224 | 4.522760e-53 | -8.615850e-47 |
| Msa0487560 | Msa0778000 | 0.811834 | 5.741601e-51 | -8.615850e-47 |
| Msa0487620 | Msa0778000 | 0.813005 | 3.185803e-51 | -8.615850e-47 |
| Msa0489620 | Msa0778000 | 0.816602 | 5.081706e-52 | -8.615850e-47 |
| Msa0493550 | Msa0778000 | 0.800243 | 1.578830e-48 | -8.615850e-47 |
| Msa0510230 | Msa0778000 | 0.826791 | 2.234808e-54 | -8.615850e-47 |
| Msa0514280 | Msa0778000 | 0.823288 | 1.501313e-53 | -8.615850e-47 |
| Msa0517300 | Msa0778000 | 0.804069 | 2.577631e-49 | -8.615850e-47 |
| Msa0520730 | Msa0778000 | 0.803332 | 3.667116e-49 | -8.615850e-47 |
| Msa0542030 | Msa0778000 | 0.835403 | 1.712585e-56 | -8.615850e-47 |
| Msa0547790 | Msa0778000 | 0.830903 | 2.259734e-55 | -8.615850e-47 |
| Msa0571070 | Msa0778000 | 0.831546 | 1.570109e-55 | -8.615850e-47 |
| Msa0602670 | Msa0778000 | 0.823894 | 1.083055e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778000 | MtrunA17_Chr5g0433491 | 97.619 | 210 | 3 | 2 | 1 | 208 | 1 | 210 | 2.34e-147 | 408 |
| Msa0778000 | MtrunA17_Chr3g0109681 | 61.751 | 217 | 73 | 5 | 1 | 208 | 2 | 217 | 2.44e-87 | 256 |
| Msa0778000 | MtrunA17_Chr7g0231191 | 34.682 | 173 | 109 | 3 | 22 | 192 | 6 | 176 | 1.17e-34 | 121 |
| Msa0778000 | MtrunA17_Chr2g0290281 | 29.885 | 174 | 112 | 4 | 34 | 198 | 8 | 180 | 2.02e-19 | 81.6 |
| Msa0778000 | MtrunA17_Chr4g0042551 | 33.913 | 115 | 74 | 1 | 68 | 180 | 96 | 210 | 1.31e-13 | 67.0 |
| Msa0778000 | MtrunA17_Chr7g0217691 | 27.778 | 180 | 120 | 4 | 11 | 181 | 2 | 180 | 6.41e-13 | 64.7 |
| Msa0778000 | MtrunA17_Chr4g0021111 | 27.815 | 151 | 98 | 4 | 35 | 180 | 6 | 150 | 9.78e-12 | 60.8 |
| Msa0778000 | MtrunA17_Chr7g0251531 | 23.636 | 165 | 119 | 2 | 29 | 186 | 22 | 186 | 2.82e-11 | 60.1 |
| Msa0778000 | MtrunA17_Chr4g0072591 | 27.907 | 129 | 84 | 1 | 70 | 189 | 46 | 174 | 3.85e-11 | 59.7 |
| Msa0778000 | MtrunA17_Chr5g0417761 | 26.136 | 176 | 122 | 2 | 14 | 181 | 5 | 180 | 4.14e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778000 | AT1G17200.1 | 60.000 | 180 | 69 | 3 | 29 | 206 | 24 | 202 | 2.24e-71 | 216 |
| Msa0778000 | AT3G14380.1 | 54.839 | 155 | 69 | 1 | 38 | 191 | 24 | 178 | 8.62e-50 | 160 |
| Msa0778000 | AT1G17200.2 | 55.046 | 109 | 47 | 2 | 99 | 206 | 1 | 108 | 6.72e-35 | 120 |
| Msa0778000 | AT5G54980.1 | 34.337 | 166 | 104 | 3 | 34 | 196 | 29 | 192 | 8.92e-23 | 91.3 |
| Msa0778000 | AT4G16442.1 | 30.539 | 167 | 107 | 3 | 34 | 191 | 8 | 174 | 5.42e-16 | 73.2 |
| Msa0778000 | AT2G35760.1 | 26.471 | 204 | 133 | 4 | 4 | 198 | 5 | 200 | 1.28e-14 | 69.7 |
| Msa0778000 | AT1G03700.1 | 28.105 | 153 | 99 | 4 | 41 | 188 | 13 | 159 | 6.26e-13 | 64.7 |
| Msa0778000 | AT1G14160.1 | 33.613 | 119 | 77 | 1 | 68 | 184 | 88 | 206 | 2.59e-11 | 60.8 |
| Msa0778000 | AT2G27370.1 | 30.769 | 117 | 79 | 1 | 70 | 184 | 101 | 217 | 8.57e-11 | 59.7 |
Find 60 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTGATCTTGGCGCTTTC+AGG | 0.140569 | 5_2:-57781792 | Msa0778000:intron |
| TTTCACTCATATCCTCTTAT+AGG | 0.157418 | 5_2:-57779660 | Msa0778000:CDS |
| AGCAAAACTATAAATCTAAA+AGG | 0.271692 | 5_2:+57779514 | None:intergenic |
| GTTCTATACCTTGCTGAATA+TGG | 0.284110 | 5_2:-57779793 | Msa0778000:CDS |
| TTGTTATAACTATCTTATAT+TGG | 0.311251 | 5_2:-57779374 | Msa0778000:three_prime_UTR |
| TACAAGATCTTCCATTGAAA+TGG | 0.311295 | 5_2:-57781971 | Msa0778000:CDS |
| TCTGTTGCCTATTCTGATCT+TGG | 0.316388 | 5_2:-57781802 | Msa0778000:CDS |
| ATAAAGGTACAAATTGAGTT+TGG | 0.324980 | 5_2:+57782077 | None:intergenic |
| AAAGGAAATGACCAACGATT+AGG | 0.339951 | 5_2:+57779532 | None:intergenic |
| TTCAACTATGCCTAAGGCTT+GGG | 0.359587 | 5_2:-57780922 | Msa0778000:CDS |
| TGGGAGTTGTTGACTTGTGC+TGG | 0.377358 | 5_2:+57779616 | None:intergenic |
| AGTTCAGCTTGTGGATCTTT+CGG | 0.384816 | 5_2:-57779751 | Msa0778000:CDS |
| ATTGGCATTGCTGCTTTCAA+TGG | 0.396424 | 5_2:-57779586 | Msa0778000:CDS |
| AAGGAAATGACCAACGATTA+GGG | 0.397305 | 5_2:+57779533 | None:intergenic |
| AATAACATGGACAAGGGAAT+TGG | 0.407691 | 5_2:-57782006 | Msa0778000:exon |
| TACTGAATTTCCCATTTCAA+TGG | 0.408880 | 5_2:+57781960 | None:intergenic |
| GCTGTTACACATAAACAAAT+AGG | 0.414973 | 5_2:+57781868 | None:intergenic |
| AATTCTGAGGAAAATGAGTA+TGG | 0.430525 | 5_2:-57781826 | Msa0778000:CDS |
| GTAGTTGATGAAGAATTTGA+AGG | 0.438687 | 5_2:-57781940 | Msa0778000:CDS |
| ACTAGTATATAGCTACAAAT+TGG | 0.439685 | 5_2:+57782036 | None:intergenic |
| CTTCAACTATGCCTAAGGCT+TGG | 0.448431 | 5_2:-57780923 | Msa0778000:CDS |
| CTTGCTAAATAGCCTATAAG+AGG | 0.450822 | 5_2:+57779648 | None:intergenic |
| AGCTTCATTGCTACGTATTG+TGG | 0.458863 | 5_2:-57781911 | Msa0778000:CDS |
| AGGTACAAATTGAGTTTGGT+TGG | 0.466935 | 5_2:+57782081 | None:intergenic |
| ACAAGATCTTCCATTGAAAT+GGG | 0.467090 | 5_2:-57781970 | Msa0778000:CDS |
| GAAAGCGCCAAGATCAGAAT+AGG | 0.490579 | 5_2:+57781795 | None:intergenic |
| CATGTACTTTGTTATCCACC+AGG | 0.504588 | 5_2:+57779410 | None:intergenic |
| CCGTCCTTCAACTATGCCTA+AGG | 0.510562 | 5_2:-57780928 | Msa0778000:CDS |
| CTTAGGCATAGTTGAAGGAC+GGG | 0.514097 | 5_2:+57780929 | None:intergenic |
| AGTTATCACATTTATTGCTG+TGG | 0.518652 | 5_2:-57779698 | Msa0778000:CDS |
| ACATACATAATCCTAGCTGC+TGG | 0.524742 | 5_2:-57779832 | Msa0778000:CDS |
| GAATGAGTAATAATATTGTA+AGG | 0.525280 | 5_2:+57779559 | None:intergenic |
| CTCATTCTGTCCCTAATCGT+TGG | 0.535655 | 5_2:-57779543 | Msa0778000:three_prime_UTR |
| ATTCATGTACACATCACAAA+GGG | 0.551225 | 5_2:+57779441 | None:intergenic |
| CATGCCAATGGTATTTGTGC+AGG | 0.554512 | 5_2:-57780987 | Msa0778000:CDS |
| CATTATGCTTAAGAATTCTG+AGG | 0.555673 | 5_2:-57781839 | Msa0778000:CDS |
| AGCAATGCCAATGTCCTTGT+GGG | 0.557112 | 5_2:+57779597 | None:intergenic |
| GAATATGGAGTCCCTACTGC+AGG | 0.568100 | 5_2:-57779778 | Msa0778000:CDS |
| AACAACTCCCACAAGGACAT+TGG | 0.574862 | 5_2:-57779604 | Msa0778000:CDS |
| GCTGAACTCCATCCTGCAGT+AGG | 0.577795 | 5_2:+57779766 | None:intergenic |
| CAGCAATGCCAATGTCCTTG+TGG | 0.579924 | 5_2:+57779596 | None:intergenic |
| CTGAACTCCATCCTGCAGTA+GGG | 0.588006 | 5_2:+57779767 | None:intergenic |
| CAAGCCTTAGGCATAGTTGA+AGG | 0.590779 | 5_2:+57780924 | None:intergenic |
| AGGTATTTGGTGCATGCCAA+TGG | 0.592552 | 5_2:-57780999 | Msa0778000:CDS |
| TTAATACAGCTCCAGCAGCT+AGG | 0.598816 | 5_2:+57779821 | None:intergenic |
| ATATCCTGCACAAATACCAT+TGG | 0.600027 | 5_2:+57780983 | None:intergenic |
| CCTTAGGCATAGTTGAAGGA+CGG | 0.602862 | 5_2:+57780928 | None:intergenic |
| GCAGGATGGAGTTCAGCTTG+TGG | 0.603477 | 5_2:-57779760 | Msa0778000:CDS |
| ATGGAGTCCCTACTGCAGGA+TGG | 0.616514 | 5_2:-57779774 | Msa0778000:CDS |
| CACAATAATAACATGGACAA+GGG | 0.617085 | 5_2:-57782012 | Msa0778000:exon |
| GTACATGAATAATTATATCC+TGG | 0.624732 | 5_2:-57779428 | Msa0778000:three_prime_UTR |
| TATTCATGTACACATCACAA+AGG | 0.633588 | 5_2:+57779440 | None:intergenic |
| CATGAATAATTATATCCTGG+TGG | 0.635470 | 5_2:-57779425 | Msa0778000:three_prime_UTR |
| GCACAATAATAACATGGACA+AGG | 0.662151 | 5_2:-57782013 | Msa0778000:exon |
| AATATAAGATAGTTATAACA+AGG | 0.663165 | 5_2:+57779376 | None:intergenic |
| TAGGGACTCCATATTCAGCA+AGG | 0.672967 | 5_2:+57779785 | None:intergenic |
| ACAAGTCAACAACTCCCACA+AGG | 0.673400 | 5_2:-57779611 | Msa0778000:CDS |
| ACTAGTGCACAATAATAACA+TGG | 0.684958 | 5_2:-57782019 | Msa0778000:exon |
| TGCTGGAGCTGTATTAACAG+AGG | 0.687633 | 5_2:-57779815 | Msa0778000:CDS |
| TTAGGCATAGTTGAAGGACG+GGG | 0.688488 | 5_2:+57780930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAACAAATTTTATCTA+GGG | + | chr5_2:57780093-57780112 | None:intergenic | 10.0% |
| !!! | ATTTTAAACAAATTTTATCT+AGG | + | chr5_2:57780094-57780113 | None:intergenic | 10.0% |
| !! | CAAAAGTAAATAAAAATTAT+AGG | - | chr5_2:57781300-57781319 | Msa0778000:intron | 10.0% |
| !! | AAAGTAAATAAAAATTATAG+GGG | - | chr5_2:57781302-57781321 | Msa0778000:intron | 10.0% |
| !!! | ATTTTTACATCAAAATTTAA+AGG | + | chr5_2:57781510-57781529 | None:intergenic | 10.0% |
| !!! | ATTTTTTGTGGAAAAAATAA+AGG | + | chr5_2:57779394-57779413 | None:intergenic | 15.0% |
| !! | AGCAAAAAAACTATAAAATT+TGG | + | chr5_2:57779708-57779727 | None:intergenic | 15.0% |
| !!! | GAATTTGTTTTTTTATTGAT+AGG | - | chr5_2:57779973-57779992 | Msa0778000:intron | 15.0% |
| !!! | TTTAAACAAATTTTATCTAG+GGG | + | chr5_2:57780092-57780111 | None:intergenic | 15.0% |
| !!! | GAATTATATTTTAAGTCAAT+AGG | - | chr5_2:57780206-57780225 | Msa0778000:intron | 15.0% |
| !! | CTGTTAAATATTCATATAAA+AGG | - | chr5_2:57781235-57781254 | Msa0778000:intron | 15.0% |
| !! | AAGTAAATAAAAATTATAGG+GGG | - | chr5_2:57781303-57781322 | Msa0778000:intron | 15.0% |
| !! | TAAAAAATCCAAATATTACA+GGG | - | chr5_2:57781459-57781478 | Msa0778000:intron | 15.0% |
| !! | AATATAAGATAGTTATAACA+AGG | + | chr5_2:57782079-57782098 | None:intergenic | 15.0% |
| !!! | TACAAATTGGTTATTTTTTG+TGG | + | chr5_2:57779406-57779425 | None:intergenic | 20.0% |
| !!! | TTTTTTTGCTCTACTTAAAT+TGG | - | chr5_2:57779718-57779737 | Msa0778000:CDS | 20.0% |
| !! | GAATAATATCCTTATGTTTA+TGG | + | chr5_2:57779746-57779765 | None:intergenic | 20.0% |
| !!! | TAACCTTTGAAATAATTTGA+AGG | - | chr5_2:57779896-57779915 | Msa0778000:intron | 20.0% |
| !! | TTTCAAAGAACTAATTTGAT+TGG | - | chr5_2:57779929-57779948 | Msa0778000:intron | 20.0% |
| !!! | TTAAACAAATTTTATCTAGG+GGG | + | chr5_2:57780091-57780110 | None:intergenic | 20.0% |
| !!! | GTATTTTAATCAGTTTGTAT+AGG | - | chr5_2:57780812-57780831 | Msa0778000:intron | 20.0% |
| !! | TATCTAAGAATTAACCATAT+TGG | - | chr5_2:57781150-57781169 | Msa0778000:intron | 20.0% |
| !! | TTTCTTATTCATTACCAATA+TGG | + | chr5_2:57781167-57781186 | None:intergenic | 20.0% |
| !! | GAATAAGAAAAATACTCAAA+AGG | - | chr5_2:57781177-57781196 | Msa0778000:intron | 20.0% |
| !! | AAGGATAGAAAATAATTATC+AGG | - | chr5_2:57781196-57781215 | Msa0778000:intron | 20.0% |
| !! | TAACATTCAAATTGAAAATG+AGG | - | chr5_2:57781329-57781348 | Msa0778000:intron | 20.0% |
| !! | AACATTCAAATTGAAAATGA+GGG | - | chr5_2:57781330-57781349 | Msa0778000:intron | 20.0% |
| !! | GTAAAAAATCCAAATATTAC+AGG | - | chr5_2:57781458-57781477 | Msa0778000:intron | 20.0% |
| !! | GAATGAGTAATAATATTGTA+AGG | + | chr5_2:57781896-57781915 | None:intergenic | 20.0% |
| !! | AGCAAAACTATAAATCTAAA+AGG | + | chr5_2:57781941-57781960 | None:intergenic | 20.0% |
| !! | ATAAAGGTACAAATTGAGTT+TGG | + | chr5_2:57779378-57779397 | None:intergenic | 25.0% |
| ! | ACTAGTATATAGCTACAAAT+TGG | + | chr5_2:57779419-57779438 | None:intergenic | 25.0% |
| ! | AAATTGGATCCATAAACATA+AGG | - | chr5_2:57779734-57779753 | Msa0778000:CDS | 25.0% |
| !!! | ATTCAATTGTTTTTGAGCTA+AGG | - | chr5_2:57779762-57779781 | Msa0778000:CDS | 25.0% |
| ! | TCTCCTTCAAATTATTTCAA+AGG | + | chr5_2:57779902-57779921 | None:intergenic | 25.0% |
| ! | TTTAAATTTCTTAGCATGTG+CGG | + | chr5_2:57780155-57780174 | None:intergenic | 25.0% |
| ! | AGAAAACAAAATAACTAGCT+AGG | - | chr5_2:57780328-57780347 | Msa0778000:intron | 25.0% |
| !!! | ATCATGAACCAATCTTATTT+TGG | - | chr5_2:57780409-57780428 | Msa0778000:intron | 25.0% |
| ! | TACAAACACCAAAATAAGAT+TGG | + | chr5_2:57780420-57780439 | None:intergenic | 25.0% |
| !! | GTTTGTATTTTGCATATTGT+AGG | - | chr5_2:57780433-57780452 | Msa0778000:intron | 25.0% |
| !! | TTTTGCATATTGTAGGTATT+TGG | - | chr5_2:57780440-57780459 | Msa0778000:intron | 25.0% |
| !!! | AATTTCCATCTTACTTTTTC+TGG | - | chr5_2:57780862-57780881 | Msa0778000:intron | 25.0% |
| ! | TAATACCATCACACATTAAA+TGG | + | chr5_2:57780933-57780952 | None:intergenic | 25.0% |
| ! | ATATTGAATGATTGCATGAA+GGG | + | chr5_2:57781036-57781055 | None:intergenic | 25.0% |
| ! | TTCTTAGATACCTTAAAGTT+TGG | + | chr5_2:57781140-57781159 | None:intergenic | 25.0% |
| ! | AGGGTTCTATAAATATTCTA+GGG | - | chr5_2:57781349-57781368 | Msa0778000:intron | 25.0% |
| ! | ACATCAAAATTTAAAGGTCT+GGG | + | chr5_2:57781504-57781523 | None:intergenic | 25.0% |
| ! | TACATCAAAATTTAAAGGTC+TGG | + | chr5_2:57781505-57781524 | None:intergenic | 25.0% |
| ! | TAGGATATATCAAACACAAA+TGG | + | chr5_2:57781591-57781610 | None:intergenic | 25.0% |
| ! | TTGTGTTTGATATATCCTAT+AGG | - | chr5_2:57781592-57781611 | Msa0778000:intron | 25.0% |
| ! | GTACATGAATAATTATATCC+TGG | - | chr5_2:57782024-57782043 | Msa0778000:five_prime_UTR | 25.0% |
| ACTAGTGCACAATAATAACA+TGG | - | chr5_2:57779433-57779452 | Msa0778000:three_prime_UTR | 30.0% | |
| CACAATAATAACATGGACAA+GGG | - | chr5_2:57779440-57779459 | Msa0778000:three_prime_UTR | 30.0% | |
| TACAAGATCTTCCATTGAAA+TGG | - | chr5_2:57779481-57779500 | Msa0778000:three_prime_UTR | 30.0% | |
| ACAAGATCTTCCATTGAAAT+GGG | - | chr5_2:57779482-57779501 | Msa0778000:three_prime_UTR | 30.0% | |
| TACTGAATTTCCCATTTCAA+TGG | + | chr5_2:57779495-57779514 | None:intergenic | 30.0% | |
| !! | GTAGTTGATGAAGAATTTGA+AGG | - | chr5_2:57779512-57779531 | Msa0778000:three_prime_UTR | 30.0% |
| GCTGTTACACATAAACAAAT+AGG | + | chr5_2:57779587-57779606 | None:intergenic | 30.0% | |
| CATTATGCTTAAGAATTCTG+AGG | - | chr5_2:57779613-57779632 | Msa0778000:CDS | 30.0% | |
| ! | AATTCTGAGGAAAATGAGTA+TGG | - | chr5_2:57779626-57779645 | Msa0778000:CDS | 30.0% |
| AATTTGGCAAACTTCATTGA+TGG | + | chr5_2:57779692-57779711 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGAGCTAAGGTTT+TGG | - | chr5_2:57779768-57779787 | Msa0778000:CDS | 30.0% |
| TTGACAAATGAAAACTCACT+TGG | - | chr5_2:57779836-57779855 | Msa0778000:CDS | 30.0% | |
| TTCTTAGATACCTTAAAGCT+TGG | - | chr5_2:57780057-57780076 | Msa0778000:intron | 30.0% | |
| GAGCAAGTAAAACAATAGTT+AGG | - | chr5_2:57780303-57780322 | Msa0778000:intron | 30.0% | |
| ACTGGAATATATTTCATGTC+TGG | + | chr5_2:57780387-57780406 | None:intergenic | 30.0% | |
| ! | AAGATTGGTTCATGATTAAC+TGG | + | chr5_2:57780405-57780424 | None:intergenic | 30.0% |
| ! | TTTCAAGTAAGATATTGACC+TGG | + | chr5_2:57780572-57780591 | None:intergenic | 30.0% |
| !!! | ATGAGAGAACGTTTTTTGTT+GGG | + | chr5_2:57780606-57780625 | None:intergenic | 30.0% |
| !!! | TATGAGAGAACGTTTTTTGT+TGG | + | chr5_2:57780607-57780626 | None:intergenic | 30.0% |
| TCATTCCAGAAAAAGTAAGA+TGG | + | chr5_2:57780870-57780889 | None:intergenic | 30.0% | |
| !! | AATGGAAGTACTTGTCAATA+TGG | + | chr5_2:57780915-57780934 | None:intergenic | 30.0% |
| TACTTCCATTTAATGTGTGA+TGG | - | chr5_2:57780925-57780944 | Msa0778000:CDS | 30.0% | |
| ACAACATTACCCATATTGTT+TGG | - | chr5_2:57780999-57781018 | Msa0778000:CDS | 30.0% | |
| GATATTGAATGATTGCATGA+AGG | + | chr5_2:57781037-57781056 | None:intergenic | 30.0% | |
| TGAAATCCAACCAAACTTTA+AGG | - | chr5_2:57781127-57781146 | Msa0778000:intron | 30.0% | |
| TAGATACCTTAAAGTTTGGT+TGG | + | chr5_2:57781136-57781155 | None:intergenic | 30.0% | |
| GAGGGTTCTATAAATATTCT+AGG | - | chr5_2:57781348-57781367 | Msa0778000:intron | 30.0% | |
| GGGTTCTATAAATATTCTAG+GGG | - | chr5_2:57781350-57781369 | Msa0778000:intron | 30.0% | |
| GGTTCTATAAATATTCTAGG+GGG | - | chr5_2:57781351-57781370 | Msa0778000:intron | 30.0% | |
| TTCTAGCATTCATACTGAAT+AGG | - | chr5_2:57781425-57781444 | Msa0778000:intron | 30.0% | |
| ATTCATACTGAATAGGTAGA+AGG | - | chr5_2:57781432-57781451 | Msa0778000:intron | 30.0% | |
| TTCATACTGAATAGGTAGAA+GGG | - | chr5_2:57781433-57781452 | Msa0778000:intron | 30.0% | |
| TTATGTATGTTTGCACCTAT+AGG | + | chr5_2:57781610-57781629 | None:intergenic | 30.0% | |
| AGTTATCACATTTATTGCTG+TGG | - | chr5_2:57781754-57781773 | Msa0778000:intron | 30.0% | |
| TTTCACTCATATCCTCTTAT+AGG | - | chr5_2:57781792-57781811 | Msa0778000:intron | 30.0% | |
| ATTCATGTACACATCACAAA+GGG | + | chr5_2:57782014-57782033 | None:intergenic | 30.0% | |
| TATTCATGTACACATCACAA+AGG | + | chr5_2:57782015-57782034 | None:intergenic | 30.0% | |
| CATGAATAATTATATCCTGG+TGG | - | chr5_2:57782027-57782046 | Msa0778000:five_prime_UTR | 30.0% | |
| GCACAATAATAACATGGACA+AGG | - | chr5_2:57779439-57779458 | Msa0778000:three_prime_UTR | 35.0% | |
| AATAACATGGACAAGGGAAT+TGG | - | chr5_2:57779446-57779465 | Msa0778000:three_prime_UTR | 35.0% | |
| GATACCTTAAAGCTTGGTAT+CGG | - | chr5_2:57780063-57780082 | Msa0778000:intron | 35.0% | |
| ! | CTCTATGTTTCTTTGATGGT+TGG | + | chr5_2:57780286-57780305 | None:intergenic | 35.0% |
| CTTGCTCTATGTTTCTTTGA+TGG | + | chr5_2:57780290-57780309 | None:intergenic | 35.0% | |
| GGAATATATTTCATGTCTGG+TGG | + | chr5_2:57780384-57780403 | None:intergenic | 35.0% | |
| ATATCCTGCACAAATACCAT+TGG | + | chr5_2:57780472-57780491 | None:intergenic | 35.0% | |
| ! | TTAAGTCACGTTTGCTACAT+TGG | + | chr5_2:57780749-57780768 | None:intergenic | 35.0% |
| !!! | TAGGAGTGAGTGTTTTTAGT+TGG | - | chr5_2:57780831-57780850 | Msa0778000:intron | 35.0% |
| !!! | CTTACTTTTTCTGGAATGAG+AGG | - | chr5_2:57780871-57780890 | Msa0778000:intron | 35.0% |
| CATGCTCAACCAAACAATAT+GGG | + | chr5_2:57781011-57781030 | None:intergenic | 35.0% | |
| ACATGCTCAACCAAACAATA+TGG | + | chr5_2:57781012-57781031 | None:intergenic | 35.0% | |
| ! | GTTGGATTTCAGTAACTTGT+TGG | + | chr5_2:57781118-57781137 | None:intergenic | 35.0% |
| GTTCTATACCTTGCTGAATA+TGG | - | chr5_2:57781659-57781678 | Msa0778000:intron | 35.0% | |
| CTTGCTAAATAGCCTATAAG+AGG | + | chr5_2:57781807-57781826 | None:intergenic | 35.0% | |
| AAGGAAATGACCAACGATTA+GGG | + | chr5_2:57781922-57781941 | None:intergenic | 35.0% | |
| AAAGGAAATGACCAACGATT+AGG | + | chr5_2:57781923-57781942 | None:intergenic | 35.0% | |
| AGCTTCATTGCTACGTATTG+TGG | - | chr5_2:57779541-57779560 | Msa0778000:three_prime_UTR | 40.0% | |
| TCTGTTGCCTATTCTGATCT+TGG | - | chr5_2:57779650-57779669 | Msa0778000:CDS | 40.0% | |
| CTCACTTGGTCATTTGATAG+AGG | - | chr5_2:57779850-57779869 | Msa0778000:intron | 40.0% | |
| ACTTGGTCATTTGATAGAGG+AGG | - | chr5_2:57779853-57779872 | Msa0778000:intron | 40.0% | |
| CTTGGTCATTTGATAGAGGA+GGG | - | chr5_2:57779854-57779873 | Msa0778000:intron | 40.0% | |
| TTCAACTATGCCTAAGGCTT+GGG | - | chr5_2:57780530-57780549 | Msa0778000:intron | 40.0% | |
| AAAAAGAAAGCCCAAGCCTT+AGG | + | chr5_2:57780543-57780562 | None:intergenic | 40.0% | |
| !! | AACGTGAGTTAACTTGTGTG+CGG | + | chr5_2:57780648-57780667 | None:intergenic | 40.0% |
| CACACAAGTTAACTCACGTT+CGG | - | chr5_2:57780648-57780667 | Msa0778000:intron | 40.0% | |
| TACACGAGTTAATTCACGCT+GGG | - | chr5_2:57780688-57780707 | Msa0778000:intron | 40.0% | |
| AAACGTGACTTAAGTCACGT+TGG | - | chr5_2:57780756-57780775 | Msa0778000:intron | 40.0% | |
| AACGTGACTTAAGTCACGTT+GGG | - | chr5_2:57780757-57780776 | Msa0778000:intron | 40.0% | |
| TCCAAATATTACAGGGTAGC+TGG | - | chr5_2:57781466-57781485 | Msa0778000:intron | 40.0% | |
| ACCAGCTACCCTGTAATATT+TGG | + | chr5_2:57781470-57781489 | None:intergenic | 40.0% | |
| ACATACATAATCCTAGCTGC+TGG | - | chr5_2:57781620-57781639 | Msa0778000:intron | 40.0% | |
| AGTTCAGCTTGTGGATCTTT+CGG | - | chr5_2:57781701-57781720 | Msa0778000:intron | 40.0% | |
| !! | ATTGGCATTGCTGCTTTCAA+TGG | - | chr5_2:57781866-57781885 | Msa0778000:CDS | 40.0% |
| ! | CATGTACTTTGTTATCCACC+AGG | + | chr5_2:57782045-57782064 | None:intergenic | 40.0% |
| !! | GAAAGCGCCAAGATCAGAAT+AGG | + | chr5_2:57779660-57779679 | None:intergenic | 45.0% |
| ATTCTGATCTTGGCGCTTTC+AGG | - | chr5_2:57779660-57779679 | Msa0778000:CDS | 45.0% | |
| !! | GGTACCGATACCAAGCTTTA+AGG | + | chr5_2:57780070-57780089 | None:intergenic | 45.0% |
| !! | AGGTATTTGGTGCATGCCAA+TGG | - | chr5_2:57780453-57780472 | Msa0778000:intron | 45.0% |
| CATGCCAATGGTATTTGTGC+AGG | - | chr5_2:57780465-57780484 | Msa0778000:intron | 45.0% | |
| TTAGGCATAGTTGAAGGACG+GGG | + | chr5_2:57780525-57780544 | None:intergenic | 45.0% | |
| CTTAGGCATAGTTGAAGGAC+GGG | + | chr5_2:57780526-57780545 | None:intergenic | 45.0% | |
| CCTTAGGCATAGTTGAAGGA+CGG | + | chr5_2:57780527-57780546 | None:intergenic | 45.0% | |
| CAAGCCTTAGGCATAGTTGA+AGG | + | chr5_2:57780531-57780550 | None:intergenic | 45.0% | |
| CTTCAACTATGCCTAAGGCT+TGG | - | chr5_2:57780529-57780548 | Msa0778000:intron | 45.0% | |
| ! | GGCTTTCTTTTTGCTTGACC+AGG | - | chr5_2:57780551-57780570 | Msa0778000:intron | 45.0% |
| !! | AACTTGTGTGCGGAGTGTTT+TGG | + | chr5_2:57780638-57780657 | None:intergenic | 45.0% |
| CAGCGTGAATTAACTCGTGT+AGG | + | chr5_2:57780689-57780708 | None:intergenic | 45.0% | |
| CTACACGAGTTAATTCACGC+TGG | - | chr5_2:57780687-57780706 | Msa0778000:intron | 45.0% | |
| ! | TCAAGTGAGTTGACTCACGT+AGG | + | chr5_2:57780720-57780739 | None:intergenic | 45.0% |
| TTAATACAGCTCCAGCAGCT+AGG | + | chr5_2:57781634-57781653 | None:intergenic | 45.0% | |
| TGCTGGAGCTGTATTAACAG+AGG | - | chr5_2:57781637-57781656 | Msa0778000:intron | 45.0% | |
| TAGGGACTCCATATTCAGCA+AGG | + | chr5_2:57781670-57781689 | None:intergenic | 45.0% | |
| ACAAGTCAACAACTCCCACA+AGG | - | chr5_2:57781841-57781860 | Msa0778000:CDS | 45.0% | |
| AACAACTCCCACAAGGACAT+TGG | - | chr5_2:57781848-57781867 | Msa0778000:CDS | 45.0% | |
| AGCAATGCCAATGTCCTTGT+GGG | + | chr5_2:57781858-57781877 | None:intergenic | 45.0% | |
| CTCATTCTGTCCCTAATCGT+TGG | - | chr5_2:57781909-57781928 | Msa0778000:CDS | 45.0% | |
| !!! | TCTAAAATATTAATTTTATT+AGG | - | chr5_2:57780971-57780990 | Msa0778000:CDS | 5.0% |
| !! | AAAAGTAAATAAAAATTATA+GGG | - | chr5_2:57781301-57781320 | Msa0778000:intron | 5.0% |
| ! | GACACAAGAAGTGCAAGACG+AGG | - | chr5_2:57780228-57780247 | Msa0778000:intron | 50.0% |
| CCGTCCTTCAACTATGCCTA+AGG | - | chr5_2:57780524-57780543 | Msa0778000:intron | 50.0% | |
| CTGCGTGACTTAAGTCACGT+GGG | - | chr5_2:57780788-57780807 | Msa0778000:intron | 50.0% | |
| TGCGTGACTTAAGTCACGTG+GGG | - | chr5_2:57780789-57780808 | Msa0778000:intron | 50.0% | |
| GAATATGGAGTCCCTACTGC+AGG | - | chr5_2:57781674-57781693 | Msa0778000:intron | 50.0% | |
| CTGAACTCCATCCTGCAGTA+GGG | + | chr5_2:57781688-57781707 | None:intergenic | 50.0% | |
| !! | TGGGAGTTGTTGACTTGTGC+TGG | + | chr5_2:57781839-57781858 | None:intergenic | 50.0% |
| CAGCAATGCCAATGTCCTTG+TGG | + | chr5_2:57781859-57781878 | None:intergenic | 50.0% | |
| CCACGTGACTTAAGTCACGC+AGG | + | chr5_2:57780790-57780809 | None:intergenic | 55.0% | |
| CCTGCGTGACTTAAGTCACG+TGG | - | chr5_2:57780787-57780806 | Msa0778000:intron | 55.0% | |
| GCGTGACTTAAGTCACGTGG+GGG | - | chr5_2:57780790-57780809 | Msa0778000:intron | 55.0% | |
| ATGGAGTCCCTACTGCAGGA+TGG | - | chr5_2:57781678-57781697 | Msa0778000:intron | 55.0% | |
| GCTGAACTCCATCCTGCAGT+AGG | + | chr5_2:57781689-57781708 | None:intergenic | 55.0% | |
| GCAGGATGGAGTTCAGCTTG+TGG | - | chr5_2:57781692-57781711 | Msa0778000:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 57779374 | 57782100 | 57779374 | ID=Msa0778000;Name=Msa0778000 |
| chr5_2 | mRNA | 57779374 | 57782100 | 57779374 | ID=Msa0778000-mRNA-1;Parent=Msa0778000;Name=Msa0778000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78|1|1|1|1|1|3|208|208 |
| chr5_2 | exon | 57779374 | 57779860 | 57779374 | ID=Msa0778000-mRNA-1:exon:17072;Parent=Msa0778000-mRNA-1 |
| chr5_2 | exon | 57780902 | 57781019 | 57780902 | ID=Msa0778000-mRNA-1:exon:17071;Parent=Msa0778000-mRNA-1 |
| chr5_2 | exon | 57781793 | 57782100 | 57781793 | ID=Msa0778000-mRNA-1:exon:17070;Parent=Msa0778000-mRNA-1 |
| chr5_2 | five_prime_UTR | 57782023 | 57782100 | 57782023 | ID=Msa0778000-mRNA-1:five_prime_utr;Parent=Msa0778000-mRNA-1 |
| chr5_2 | CDS | 57781793 | 57782022 | 57781793 | ID=Msa0778000-mRNA-1:cds;Parent=Msa0778000-mRNA-1 |
| chr5_2 | CDS | 57780902 | 57781019 | 57780902 | ID=Msa0778000-mRNA-1:cds;Parent=Msa0778000-mRNA-1 |
| chr5_2 | CDS | 57779582 | 57779860 | 57779582 | ID=Msa0778000-mRNA-1:cds;Parent=Msa0778000-mRNA-1 |
| chr5_2 | three_prime_UTR | 57779374 | 57779581 | 57779374 | ID=Msa0778000-mRNA-1:three_prime_utr;Parent=Msa0778000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
