AlfalfaGEDB | Msa1145370

M. sativa cultivar zhongmu-4 / Msa1145370

KEGG: K03070
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680
PFAM: PF07517.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145370	GAU40571.1	91.683	998	53	2	1	971	1	995	0.0	1862

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145370	sp\|Q41062\|SECA_PEA	90.020	1012	59	3	1	971	1	1011	0.0	1817

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145370	G7IBQ7	95.351	1011	7	2	1	971	1	1011	0.0	1957

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1145370	0.827421	1.579087e-54	-8.615850e-47
Msa0000220	Msa1145370	0.864781	9.500265e-65	-8.615850e-47
Msa0000500	Msa1145370	0.810753	9.855585e-51	-8.615850e-47
Msa0000780	Msa1145370	0.828147	1.056606e-54	-8.615850e-47
Msa0001420	Msa1145370	0.835453	1.663207e-56	-8.615850e-47
Msa0001460	Msa1145370	0.882234	1.235367e-70	-8.615850e-47
Msa0001510	Msa1145370	0.826250	3.006763e-54	-8.615850e-47
Msa0001540	Msa1145370	0.889272	2.809099e-73	-8.615850e-47
Msa0002060	Msa1145370	0.808940	2.418752e-50	-8.615850e-47
Msa0004350	Msa1145370	0.808404	3.149572e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145370	MtrunA17_Chr1g0193971	89.729	1032	45	6	1	971	1	1032	0.0	1848
Msa1145370	MtrunA17_Chr3g0125191	40.161	996	458	19	58	924	43	1029	0.0	622

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1145370	AT4G01800.3	77.124	1036	159	8	1	971	1	1023	1589
Msa1145370	AT4G01800.1	79.518	996	150	7	24	971	33	1022	1588
Msa1145370	AT4G01800.2	75.735	1055	159	9	1	971	1	1042	1577
Msa1145370	AT1G21650.1	43.667	829	389	11	45	802	41	862	613
Msa1145370	AT1G21650.2	43.667	829	389	11	45	802	41	862	613
Msa1145370	AT1G21650.3	44.753	791	359	10	82	802	827	1609	603

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Find 247 sgRNAs with CRISPR-Local

Find 857 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGAAAATGTTGAGA+GGG	0.601818	7_4:+22173919	Msa1145370:CDS
AAAATTTGTTCAGCAAGCTG+TGG	0.553226	7_4:+22178796	Msa1145370:CDS
AAAGAGATCATTAACTGAGC+TGG	0.496811	7_4:+22176494	Msa1145370:CDS
AAAGCTGAGAATCAGAAATC+AGG	0.488346	7_4:+22179096	Msa1145370:CDS
AAATACTGAGTTGGCTGAGG+AGG	0.564553	7_4:+22176443	Msa1145370:CDS
AAATCTTCACGGAGGAAGAG+AGG	0.603524	7_4:+22176733	Msa1145370:CDS
AAATTTGTTCAGCAAGCTGT+GGG	0.556792	7_4:+22178797	Msa1145370:CDS
AACCTCCTCCTAGTAAGACA+TGG	0.600924	7_4:+22175560	Msa1145370:CDS
AACTTTCGGATTCTGAACTA+AGG	0.438919	7_4:+22167380	Msa1145370:CDS
AAGATGAACCTGGTAGGTTT+AGG	0.242133	7_4:-22167159	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCATGCATTCGAATAAGTT+GGG	-	chr7_4:22166966-22166985	None:intergenic	30.0%
ATTCATGCATTCGAATAAGT+TGG	-	chr7_4:22166967-22166986	None:intergenic	30.0%
TTGTTAGGTGGAATATTCAA+AGG	+	chr7_4:22167277-22167296	Msa1145370:CDS	30.0%
GCAACTGTTAATGTTATCAA+TGG	+	chr7_4:22167337-22167356	Msa1145370:CDS	30.0%
AGCGAAGATTTCTAAACTTT+CGG	+	chr7_4:22167366-22167385	Msa1145370:CDS	30.0%
TCAATTCACAGACAAAATTG+TGG	-	chr7_4:22167604-22167623	None:intergenic	30.0%
ATTAACCAGGTGTAAAAGAA+AGG	+	chr7_4:22167659-22167678	Msa1145370:intron	30.0%
TTAACCAGGTGTAAAAGAAA+GGG	+	chr7_4:22167660-22167679	Msa1145370:intron	30.0%
AACACAAGCGTTTATTATTC+GGG	+	chr7_4:22167938-22167957	Msa1145370:intron	30.0%
ATTCAAATAAGCTGGCAAAA+TGG	-	chr7_4:22168699-22168718	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	22166843	22179528	22166843	ID=Msa1145370;Name=Msa1145370
chr7_4	mRNA	22166843	22179528	22166843	ID=Msa1145370-mRNA-1;Parent=Msa1145370;Name=Msa1145370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=239\|0.94\|0.94\|1\|1\|1\|19\|328\|971
chr7_4	exon	22166843	22167465	22166843	ID=Msa1145370-mRNA-1:exon:5404;Parent=Msa1145370-mRNA-1
chr7_4	exon	22167801	22167873	22167801	ID=Msa1145370-mRNA-1:exon:5405;Parent=Msa1145370-mRNA-1
chr7_4	exon	22168630	22168820	22168630	ID=Msa1145370-mRNA-1:exon:5406;Parent=Msa1145370-mRNA-1
chr7_4	exon	22169372	22169551	22169372	ID=Msa1145370-mRNA-1:exon:5407;Parent=Msa1145370-mRNA-1
chr7_4	exon	22170825	22171043	22170825	ID=Msa1145370-mRNA-1:exon:5408;Parent=Msa1145370-mRNA-1
chr7_4	exon	22172887	22173000	22172887	ID=Msa1145370-mRNA-1:exon:5409;Parent=Msa1145370-mRNA-1
chr7_4	exon	22173101	22173214	22173101	ID=Msa1145370-mRNA-1:exon:5410;Parent=Msa1145370-mRNA-1
chr7_4	exon	22173527	22173694	22173527	ID=Msa1145370-mRNA-1:exon:5411;Parent=Msa1145370-mRNA-1
chr7_4	exon	22173908	22174083	22173908	ID=Msa1145370-mRNA-1:exon:5412;Parent=Msa1145370-mRNA-1
chr7_4	exon	22175519	22175585	22175519	ID=Msa1145370-mRNA-1:exon:5413;Parent=Msa1145370-mRNA-1
chr7_4	exon	22176405	22176551	22176405	ID=Msa1145370-mRNA-1:exon:5414;Parent=Msa1145370-mRNA-1
chr7_4	exon	22176666	22176761	22176666	ID=Msa1145370-mRNA-1:exon:5415;Parent=Msa1145370-mRNA-1
chr7_4	exon	22176839	22176907	22176839	ID=Msa1145370-mRNA-1:exon:5416;Parent=Msa1145370-mRNA-1
chr7_4	exon	22177088	22177189	22177088	ID=Msa1145370-mRNA-1:exon:5417;Parent=Msa1145370-mRNA-1
chr7_4	exon	22177272	22177523	22177272	ID=Msa1145370-mRNA-1:exon:5418;Parent=Msa1145370-mRNA-1
chr7_4	exon	22177605	22177672	22177605	ID=Msa1145370-mRNA-1:exon:5419;Parent=Msa1145370-mRNA-1
chr7_4	exon	22178198	22178315	22178198	ID=Msa1145370-mRNA-1:exon:5420;Parent=Msa1145370-mRNA-1
chr7_4	exon	22178695	22178934	22178695	ID=Msa1145370-mRNA-1:exon:5421;Parent=Msa1145370-mRNA-1
chr7_4	exon	22179063	22179528	22179063	ID=Msa1145370-mRNA-1:exon:5422;Parent=Msa1145370-mRNA-1
chr7_4	five_prime_UTR	22166843	22167081	22166843	ID=Msa1145370-mRNA-1:five_prime_utr;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22167082	22167465	22167082	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22167801	22167873	22167801	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22168630	22168820	22168630	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22169372	22169551	22169372	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22170825	22171043	22170825	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22172887	22173000	22172887	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22173101	22173214	22173101	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22173527	22173694	22173527	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22173908	22174083	22173908	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22175519	22175585	22175519	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22176405	22176551	22176405	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22176666	22176761	22176666	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22176839	22176907	22176839	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22177088	22177189	22177088	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22177272	22177523	22177272	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22177605	22177672	22177605	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22178198	22178315	22178198	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22178695	22178934	22178695	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	CDS	22179063	22179200	22179063	ID=Msa1145370-mRNA-1:cds;Parent=Msa1145370-mRNA-1
chr7_4	three_prime_UTR	22179201	22179528	22179201	ID=Msa1145370-mRNA-1:three_prime_utr;Parent=Msa1145370-mRNA-1

Gene Sequence

>Msa1145370

ATGGCAGCTTCTTCACTCTGTTCCTCCTTCACCTCCACAACTTCGCACTCGCAACATCGTCTTCACCACCGCAAAACCCTAAACCTACCAGGTTCATCTTTTCTTAGCAGAGAATTTCACCTCAATTCAGCTTCCGTTTCCAAAACACAGCGAAGCAGAAGTCGCCGATCGGCGACGGTTGCTTCCCTCGGTGGTTTGTTAGGTGGAATATTCAAAGGAAATGATACTGGAGAAGCTACAAGGAAACAATATGCTGCAACTGTTAATGTTATCAATGGATTGGAAGCGAAGATTTCTAAACTTTCGGATTCTGAACTAAGGGATAAGACTTTTGAGCTAAGAGAACGTGCTCAAAAGGGAGAATCCTTGGATTCTCTTTTGCCTGAAGCCTTTGCTGTTGTAAGAGAAGCTTCCAAGAGAGTTCTCGGTCTTCGTCCATTTGATGTTCAGCTGATAGGGGGTATGGTTCTTCATAAGGGAGAGATAGCTGAAATGAGGACTGGAGAAGGGAAGACACTGGTTGCCATTTTGCCAGCTTATTTGAATGCATTAGTTGGGAAGGGAGTTCACGTTGTTACTGTTAATGATTATTTGGCTCGGCGTGATTGCGAATGGGTTGGCCAAGTTCCACGCTTTCTTGGAATGAAGAGTGTTGAGGAGCTTGTCATTAGGGGTTTCAATTATTGTGTCATTGATGAGGTTGATTCAATACTTATTGATGAAGCTAGAACTCCACTCATTATATCAGGACCTGCTGAGAAACCCAGTGATAAATATTACAAGGCTGCAAAGATAGCAGAAGCCTTTGAACGTGATATACATTACACTGTGGATGAAAAACAAAAATCGGTTCTAATTTCTGAACAGGGCTACGAAGATGCTGAAGAAATTTTAGCTGTCAAAGATTTATATGATCCACGAGAACAATGGGCTTCATTTGTCCTAAATGCAATTAAAGCAAAAGAACTTTTTCTTCGAGATGTAAACTACATAATTCGCGGAAAAGAGGTGCTAATTGTTGATGAGTTTACTGGTCGAGTAATGCAGGGGAGAAGGTGGAGTGATGGACTCCATCAAGCAGTTGAAGCAAAGGAAGGGTTGCCCATCCAAAATGAAACTGTGACACTGGCTTCTATTAGTTACCAGAATTTCTTTCTGCAGTTCCCAAAACTATGTGGCATGACTGGCACTGCATCAACAGAAATCACAGAATTTGAAAGCATTTACAAGCTTAAAGTTACAATCGTGCCTACGAACAAACCTATGATAAGAAAGGATGAATCTGATGTAGTTTTCAGGGCTACTAGAGGGAAATGGCGTGCAGTTGTTGTGGAAATCTCTAGAATGCACAAAACTGGCCGACCTGTGCTTGTTGGCACGACTAGCGTTGAGCAGAGTGATTCTTTGTCTGAGCAATTGAAGGAAGCTGGAATCCCGCATGAGGTTCTTAATGCAAAACCAGAAAATGTTGAGAGGGAAGCAGAAATTGTAGCACAGAGTGGTCGTCTTGGGGCTGTGACAATTGCCACCAATATGGCTGGCCGTGGAACGGATATAATCCTTGGCGGTAATGCTGAATTTATGGCACGGTTGAAGCTTCGTGAGATACTGATGCCAAGAGTTGTTAAGCTGACTGAAGGAGATTTTGTATCGGTAAAGAAACCTCCTCCTAGTAAGACATGGAAGGTGAATGACAAGTTGTTTCCATGCCAACTATCAAATAAAAATACTGAGTTGGCTGAGGAGGCCGTGCAATTGGCTGTTAAAGCATGGGGAAAGAGATCATTAACTGAGCTGGAAGCAGAGGAGCGCCTATCATATTCCTGTGAAAAGGGCCCAGCCCAAGATGAAGTCATTGCTGCGCTGAGAAATGCATTTCTGGAAATCAGCAAGGAATATAAAATCTTCACGGAGGAAGAGAGGAAGAAGGTCGTGGCGGCTGGTGGACTAATTGTAGTGGGTACCGAGCGTCATGAATCACGGCGAATTGACAATCAGCTGCGTGGTCGAAGTGGCAGACAAGGAGATCCAGGAAGCTCACGCTTCTTTTTAAGTCTTGAAGATAATATTTTTCGGATATTTGGTGGAGACCGAATTCAGGGCTTAATGAAAGCTTTCAGAGTGGAAGACCTACCTATTGAGTCCCAGATGTTGACCAAAGCATTAGATGAAGCCCAAAAGAAAGTGGAGAACTATTTCTTTGACATTCGGAAGCAATTGTTTGAGTATGACGAAGTACTTAATAGCCAAAGAGACCGGGTTTATACAGAGAGAAGACGAGCCCTTCAATCTGACAATCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATAGATGACATTTTAGAGGCCAACATTGGTTCTGATGCTCCAAAAGACAGCTGGGATCTTGATAAACTGATTGCAAAAATCCAGCAATATTGCTACTTGTTGAATGATCTGACCCCTGATTTGCTGAGGAATGAGTGTCCGGATTATGAGGGATTGCGGAGCTATCTTCGTCTTCGCGGTAAAGAAGCCTATCTGCAAAAAAGGGATATTACGGAGCAACAAGCACCGGGTTTGATGAAAGAAGCGGAGCGGTTCCTGATCTTGAGCAATATCGATCGGCTGTGGAAAGAACATCTGCAAGCACTAAAATTTGTTCAGCAAGCTGTGGGTTTACGAGGGTATGCGCAACGGGATCCACTTATCGAATATAAACTTGAGGGCTACAACCTTTTCTTGGAGATGATGGCACAAATAAGAAGAAATGTTATATATTCCATATATCAGTTTAAACCCGTGCTGCTAAAGCAAGATCAGGATAAAGCTGAGAATCAGAAATCAGGTAAACGGAATGCACGCACTCGGACTGATACCAATCCAGATCCAGTTGGTACAGTTGAGCCATCAACAAGTGCTAGTTCATGA

Protein sequence

>Msa1145370

MAASSLCSSFTSTTSHSQHRLHHRKTLNLPGSSFLSREFHLNSASVSKTQRSRSRRSATVASLGGLLGGIFKGNDTGEATRKQYAATVNVINGLEAKISKLSDSELRDKTFELRERAQKGESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMKSVEELVIRGFNYCVIDEVDSILIDEARTPLIISGPAEKPSDKYYKAAKIAEAFERDIHYTVDEKQKSVLISEQGYEDAEEILAVKDLYDPREQWASFVLNAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTASTEITEFESIYKLKVTIVPTNKPMIRKDESDVVFRATRGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLSEQLKEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRVVKLTEGDFVSVKKPPPSKTWKVNDKLFPCQLSNKNTELAEEAVQLAVKAWGKRSLTELEAEERLSYSCEKGPAQDEVIAALRNAFLEISKEYKIFTEEERKKVVAAGGLIVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMKAFRVEDLPIESQMLTKALDEAQKKVENYFFDIRKQLFEYDEVLNSQRDRVYTERRRALQSDNLQSLLIEYAELTIDDILEANIGSDAPKDSWDLDKLIAKIQQYCYLLNDLTPDLLRNECPDYEGLRSYLRLRGKEAYLQKRDITEQQAPGLMKEAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFKPVLLKQDQDKAENQKSGKRNARTRTDTNPDPVGTVEPSTSASS*