Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723650 | PNY13277.1 | 46.377 | 138 | 41 | 3 | 17 | 130 | 1 | 129 | 1.36e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723650 | A0A2K3PDA3 | 46.377 | 138 | 41 | 3 | 17 | 130 | 1 | 129 | 6.48e-31 | 118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0723650 | 0.807738 | 4.364180e-50 | -8.615850e-47 |
| Msa0050380 | Msa0723650 | 0.813671 | 2.274516e-51 | -8.615850e-47 |
| Msa0672690 | Msa0723650 | 0.800864 | 1.179630e-48 | -8.615850e-47 |
| Msa0698930 | Msa0723650 | 0.804232 | 2.384134e-49 | -8.615850e-47 |
| Msa0723650 | Msa0880140 | 0.804297 | 2.310931e-49 | -8.615850e-47 |
| Msa0723650 | Msa0896750 | 0.803110 | 4.076620e-49 | -8.615850e-47 |
| Msa0723650 | Msa0953550 | 0.801812 | 7.547030e-49 | -8.615850e-47 |
| Msa0723650 | Msa0954130 | 0.811725 | 6.064671e-51 | -8.615850e-47 |
| Msa0723650 | Msa1082500 | 0.807280 | 5.460526e-50 | -8.615850e-47 |
| Msa0723650 | Msa1082580 | 0.800653 | 1.302935e-48 | -8.615850e-47 |
| Msa0723650 | Msa1162550 | -0.803853 | 2.858913e-49 | -8.615850e-47 |
| Msa0723650 | Msa1172670 | 0.813697 | 2.245135e-51 | -8.615850e-47 |
| Msa0723650 | Msa1233890 | 0.812846 | 3.451926e-51 | -8.615850e-47 |
| Msa0723650 | Msa1291660 | 0.806838 | 6.772488e-50 | -8.615850e-47 |
| Msa0723650 | Msa1329700 | 0.800105 | 1.684349e-48 | -8.615850e-47 |
| Msa0723650 | Msa1390050 | 0.810703 | 1.010347e-50 | -8.615850e-47 |
| Msa0723650 | Msa1392260 | 0.816037 | 6.798014e-52 | -8.615850e-47 |
| Msa0723650 | Msa1411020 | 0.809290 | 2.036113e-50 | -8.615850e-47 |
| Msa0723650 | Msa1424290 | 0.801717 | 7.894401e-49 | -8.615850e-47 |
| Msa0723650 | Msa1434350 | 0.806672 | 7.343441e-50 | -8.615850e-47 |
| Msa0723650 | Msa1439320 | 0.810161 | 1.322959e-50 | -8.615850e-47 |
| Msa0723650 | Msa1451620 | -0.804108 | 2.530862e-49 | -8.615850e-47 |
| Msa0130970 | Msa0723650 | 0.801308 | 9.572512e-49 | -8.615850e-47 |
| Msa0157290 | Msa0723650 | 0.807671 | 4.510675e-50 | -8.615850e-47 |
| Msa0188830 | Msa0723650 | 0.802828 | 4.660764e-49 | -8.615850e-47 |
| Msa0195770 | Msa0723650 | 0.807004 | 6.245434e-50 | -8.615850e-47 |
| Msa0220580 | Msa0723650 | 0.806475 | 8.079753e-50 | -8.615850e-47 |
| Msa0233300 | Msa0723650 | 0.814067 | 1.860391e-51 | -8.615850e-47 |
| Msa0376590 | Msa0723650 | 0.817817 | 2.707964e-52 | -8.615850e-47 |
| Msa0402290 | Msa0723650 | 0.802101 | 6.581089e-49 | -8.615850e-47 |
| Msa0288100 | Msa0723650 | 0.804272 | 2.338917e-49 | -8.615850e-47 |
| Msa0321860 | Msa0723650 | 0.806134 | 9.533513e-50 | -8.615850e-47 |
| Msa0338110 | Msa0723650 | 0.804552 | 2.044808e-49 | -8.615850e-47 |
| Msa0351100 | Msa0723650 | 0.807997 | 3.845890e-50 | -8.615850e-47 |
| Msa0484780 | Msa0723650 | 0.822752 | 2.001732e-53 | -8.615850e-47 |
| Msa0512900 | Msa0723650 | 0.801971 | 7.000865e-49 | -8.615850e-47 |
| Msa0516370 | Msa0723650 | 0.805601 | 1.233821e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723650 | MtrunA17_Chr5g0414521 | 80.357 | 56 | 11 | 0 | 17 | 72 | 1 | 56 | 1.80e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATGGCGACGGTGGTTTC+CGG | 0.301036 | 5_1:+21529502 | Msa0723650:CDS |
| CTGCTTTCTGCAACCGTTGT+TGG | 0.335188 | 5_1:-21529471 | None:intergenic |
| AATCCAATTGAGCAATTTCC+CGG | 0.342157 | 5_1:-21529779 | None:intergenic |
| AAACCGGGAAATTGCTCAAT+TGG | 0.345610 | 5_1:+21529776 | Msa0723650:CDS |
| TGCAAGTCAAATTGAACTCT+TGG | 0.364328 | 5_1:+21529624 | Msa0723650:CDS |
| TTAGGTCACGCTCTCAAAAC+CGG | 0.385073 | 5_1:+21529760 | Msa0723650:intron |
| TCTAGGATTTGTTCAAAAGA+AGG | 0.418770 | 5_1:+21530337 | Msa0723650:intron |
| GTGAAATGTCGAGGAGCAAC+GGG | 0.458005 | 5_1:-21529589 | None:intergenic |
| ATCCTCGTCGTCGCCGGAGT+TGG | 0.499868 | 5_1:+21529649 | Msa0723650:CDS |
| TCAATTGGATTCGCAAACCC+TGG | 0.504749 | 5_1:+21529791 | Msa0723650:CDS |
| AGCAACGGGATCGAGGGCGG+TGG | 0.505897 | 5_1:-21529575 | None:intergenic |
| GAAAGCAGAGCATAGAGCTA+TGG | 0.508857 | 5_1:+21529486 | Msa0723650:CDS |
| CTACAGGGTTTCAAAGGCAT+TGG | 0.510960 | 5_1:+21531143 | Msa0723650:intron |
| TTGGATATCCTCGTCGTCGC+CGG | 0.527179 | 5_1:+21529643 | Msa0723650:CDS |
| TGAGGAGGATCATTCTGTAC+AGG | 0.533811 | 5_1:+21530389 | Msa0723650:CDS |
| AGGTTAGAAAATAGTTATAC+CGG | 0.534492 | 5_1:+21530357 | Msa0723650:CDS |
| AACCTATGCAGGCTTCAGAC+AGG | 0.544641 | 5_1:+21531184 | Msa0723650:CDS |
| AGGCATTGGAGAAGCGTACA+TGG | 0.549987 | 5_1:+21531157 | Msa0723650:CDS |
| GAAGAATCTTCTTCGTGAGG+AGG | 0.552980 | 5_1:-21529538 | None:intergenic |
| TTTCGCCTACAGGGTTTCAA+AGG | 0.561132 | 5_1:+21531137 | Msa0723650:intron |
| TAGGTCACGCTCTCAAAACC+GGG | 0.562221 | 5_1:+21529761 | Msa0723650:intron |
| GTCGAGGAGCAACGGGATCG+AGG | 0.566645 | 5_1:-21529582 | None:intergenic |
| AGGAGCAACGGGATCGAGGG+CGG | 0.570189 | 5_1:-21529578 | None:intergenic |
| AGTGAAATGTCGAGGAGCAA+CGG | 0.571296 | 5_1:-21529590 | None:intergenic |
| TCGAGGAGCAACGGGATCGA+GGG | 0.571430 | 5_1:-21529581 | None:intergenic |
| CAATTGGATTCGCAAACCCT+GGG | 0.579078 | 5_1:+21529792 | Msa0723650:CDS |
| TTATACCGGTCCCGAAAATG+AGG | 0.580005 | 5_1:+21530371 | Msa0723650:CDS |
| TACATGGCAGAAACCTATGC+AGG | 0.588916 | 5_1:+21531173 | Msa0723650:CDS |
| TACCAACTCCGGCGACGACG+AGG | 0.618969 | 5_1:-21529651 | None:intergenic |
| GGGAAGTACAGTACCAACTC+CGG | 0.630255 | 5_1:-21529662 | None:intergenic |
| GACCTGTCTGAAGCCTGCAT+AGG | 0.640690 | 5_1:-21531186 | None:intergenic |
| GAAGAAGAATCTTCTTCGTG+AGG | 0.644672 | 5_1:-21529541 | None:intergenic |
| TACCGGTCCCGAAAATGAGG+AGG | 0.658139 | 5_1:+21530374 | Msa0723650:CDS |
| GCATAGAGCTATGGCGACGG+TGG | 0.658469 | 5_1:+21529495 | Msa0723650:CDS |
| TTATTGAGAGTGAAATGTCG+AGG | 0.675029 | 5_1:-21529598 | None:intergenic |
| AGAGCATAGAGCTATGGCGA+CGG | 0.699806 | 5_1:+21529492 | Msa0723650:CDS |
| TGAGAAACGATAACCAACAA+CGG | 0.722414 | 5_1:+21529458 | Msa0723650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATTAGTATTAGTT+TGG | - | chr5_1:21530020-21530039 | None:intergenic | 10.0% |
| !! | AATACTAATTAAATAAGTTA+AGG | + | chr5_1:21530024-21530043 | Msa0723650:intron | 10.0% |
| !! | ATACTAATTAAATAAGTTAA+GGG | + | chr5_1:21530025-21530044 | Msa0723650:intron | 10.0% |
| !! | TTAACTTATTTAATTAGTAT+TGG | - | chr5_1:21530025-21530044 | None:intergenic | 10.0% |
| !! | AAATTTCAAATTACTAATTA+GGG | - | chr5_1:21531088-21531107 | None:intergenic | 10.0% |
| !! | TAAATTTCAAATTACTAATT+AGG | - | chr5_1:21531089-21531108 | None:intergenic | 10.0% |
| !! | ATGTTGTAATCATTATTATT+AGG | + | chr5_1:21529816-21529835 | Msa0723650:intron | 15.0% |
| !! | TTTGAATTAAATTAACAGAA+GGG | - | chr5_1:21530130-21530149 | None:intergenic | 15.0% |
| !!! | TTTTGAATTAAATTAACAGA+AGG | - | chr5_1:21530129-21530148 | None:intergenic | 15.0% |
| !!! | TTATTTAATTAGTATTGGTT+TGG | - | chr5_1:21530084-21530103 | None:intergenic | 15.0% |
| !!! | CTTAACTTTATTTAAAGTTA+CGG | - | chr5_1:21530162-21530181 | None:intergenic | 15.0% |
| !! | GTAACTTTAAATAAAGTTAA+GGG | + | chr5_1:21530161-21530180 | Msa0723650:intron | 15.0% |
| !! | TAACTTTAAATAAAGTTAAG+GGG | + | chr5_1:21530162-21530181 | Msa0723650:intron | 15.0% |
| !! | ATTTAACCCTTATTATTATT+AGG | + | chr5_1:21530255-21530274 | Msa0723650:intron | 15.0% |
| !! | TTTAACCCTTATTATTATTA+GGG | + | chr5_1:21530256-21530275 | Msa0723650:intron | 15.0% |
| !! | ATAAACCCTAATAATAATAA+GGG | - | chr5_1:21530264-21530283 | None:intergenic | 15.0% |
| !! | TTAGTACCATAAGTAATAAA+AGG | + | chr5_1:21529866-21529885 | Msa0723650:intron | 20.0% |
| !! | GATACTTTAAATAAAGTCAA+GGG | - | chr5_1:21529947-21529966 | None:intergenic | 20.0% |
| !!! | CTTGACTTTATTTAAAGTAT+CGG | + | chr5_1:21529946-21529965 | Msa0723650:intron | 20.0% |
| !! | TTCAAAAAAACGTTAAAGTT+TGG | - | chr5_1:21530116-21530135 | None:intergenic | 20.0% |
| !! | CGTAACTTTAAATAAAGTTA+AGG | + | chr5_1:21530160-21530179 | Msa0723650:intron | 20.0% |
| !!! | TTGGTCTTATAAGTAATAAA+AGG | - | chr5_1:21530198-21530217 | None:intergenic | 20.0% |
| !! | CATAAACCCTAATAATAATA+AGG | - | chr5_1:21530265-21530284 | None:intergenic | 20.0% |
| !! | TTTCCTACATTAATAATATG+TGG | + | chr5_1:21530422-21530441 | Msa0723650:intron | 20.0% |
| !! | ATACCACATATTATTAATGT+AGG | - | chr5_1:21530428-21530447 | None:intergenic | 20.0% |
| !! | TCATTCATTATCTGTTATAT+TGG | + | chr5_1:21530505-21530524 | Msa0723650:intron | 20.0% |
| !!! | ATTTTATATAGAAAGAACTG+TGG | + | chr5_1:21530722-21530741 | Msa0723650:intron | 20.0% |
| !!! | GAGATGACTTTTAAATTAAA+AGG | + | chr5_1:21530862-21530881 | Msa0723650:intron | 20.0% |
| !!! | GTTCTATCTTATTTTTCTAA+CGG | + | chr5_1:21530984-21531003 | Msa0723650:intron | 20.0% |
| !! | AAAGAAAAGAATAAGAAAAC+TGG | + | chr5_1:21531483-21531502 | Msa0723650:intron | 20.0% |
| !! | AAGAAAAGAATAAGAAAACT+GGG | + | chr5_1:21531484-21531503 | Msa0723650:intron | 20.0% |
| !!! | AGAGAAATTCAATTTTCATA+TGG | - | chr5_1:21531627-21531646 | None:intergenic | 20.0% |
| !! | AAATGCTCAATTTCAAGTAT+CGG | + | chr5_1:21529842-21529861 | Msa0723650:intron | 25.0% |
| ! | CGATACTTTAAATAAAGTCA+AGG | - | chr5_1:21529948-21529967 | None:intergenic | 25.0% |
| !! | CTTTATTTAAAGTTACGGTT+GGG | - | chr5_1:21530157-21530176 | None:intergenic | 25.0% |
| !! | ACTTTATTTAAAGTTACGGT+TGG | - | chr5_1:21530158-21530177 | None:intergenic | 25.0% |
| ! | ACTTTGATTATTGCATTTCT+AGG | + | chr5_1:21530320-21530339 | Msa0723650:intron | 25.0% |
| ! | AGGTTAGAAAATAGTTATAC+CGG | + | chr5_1:21530357-21530376 | Msa0723650:CDS | 25.0% |
| ! | CTGAATATGCTAATTCTATT+TGG | + | chr5_1:21530473-21530492 | Msa0723650:intron | 25.0% |
| ! | TATGCTAATTCTATTTGGTT+TGG | + | chr5_1:21530478-21530497 | Msa0723650:intron | 25.0% |
| ! | TATAAAATCAGTGTAGAAAG+TGG | - | chr5_1:21530710-21530729 | None:intergenic | 25.0% |
| !!! | AATACCACCTTATTTTCATT+TGG | - | chr5_1:21530770-21530789 | None:intergenic | 25.0% |
| ! | TCTAAATATAAGTGTGTGTT+TGG | - | chr5_1:21530844-21530863 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTGAGAATGTGAA+GGG | - | chr5_1:21531471-21531490 | None:intergenic | 25.0% |
| ! | AGAAAAGAATAAGAAAACTG+GGG | + | chr5_1:21531485-21531504 | Msa0723650:intron | 25.0% |
| !!! | TAAAACCTGTTTCTGAATTT+CGG | - | chr5_1:21531570-21531589 | None:intergenic | 25.0% |
| ! | TTTGTGAAACACAATGATAT+GGG | - | chr5_1:21531731-21531750 | None:intergenic | 25.0% |
| ! | CATAAATACAAAGTGAAAGA+TGG | - | chr5_1:21531826-21531845 | None:intergenic | 25.0% |
| ! | CATCTTTCACTTTGTATTTA+TGG | + | chr5_1:21531824-21531843 | Msa0723650:intron | 25.0% |
| ! | AATGCATCAATACATGATAA+TGG | + | chr5_1:21531855-21531874 | Msa0723650:intron | 25.0% |
| ! | CAGTGTATAACATAAAAACA+AGG | - | chr5_1:21532215-21532234 | None:intergenic | 25.0% |
| !!! | TGTTTTTATGTTATACACTG+AGG | + | chr5_1:21532215-21532234 | Msa0723650:intron | 25.0% |
| ! | AAACAAACAGAAAATGTGTT+AGG | - | chr5_1:21532255-21532274 | None:intergenic | 25.0% |
| !!! | GTTTTAGAATTAATAACGCG+TGG | + | chr5_1:21529422-21529441 | Msa0723650:five_prime_UTR | 30.0% |
| TAATGATTACAACATACCCA+GGG | - | chr5_1:21529811-21529830 | None:intergenic | 30.0% | |
| ATAATGATTACAACATACCC+AGG | - | chr5_1:21529812-21529831 | None:intergenic | 30.0% | |
| ! | TACGGACCTTTTATTACTTA+TGG | - | chr5_1:21529875-21529894 | None:intergenic | 30.0% |
| ! | CCTTTTTCCTTCGAAAATTA+CGG | - | chr5_1:21529893-21529912 | None:intergenic | 30.0% |
| AAGTAATAAAAGGTCCGTTT+AGG | - | chr5_1:21530188-21530207 | None:intergenic | 30.0% | |
| ! | CTTAACTTGGTTTCAAGTAT+CGG | - | chr5_1:21530222-21530241 | None:intergenic | 30.0% |
| GATACTTGAAACCAAGTTAA+GGG | + | chr5_1:21530221-21530240 | Msa0723650:intron | 30.0% | |
| ! | TTGTGAAAGGTATAATGAGA+TGG | - | chr5_1:21530301-21530320 | None:intergenic | 30.0% |
| GCAATAATCAAAGTTGTGAA+AGG | - | chr5_1:21530314-21530333 | None:intergenic | 30.0% | |
| ! | TCTAGGATTTGTTCAAAAGA+AGG | + | chr5_1:21530337-21530356 | Msa0723650:intron | 30.0% |
| AGGGAAACCAAATGAAAATA+AGG | + | chr5_1:21530760-21530779 | Msa0723650:intron | 30.0% | |
| GAAACCAAATGAAAATAAGG+TGG | + | chr5_1:21530763-21530782 | Msa0723650:intron | 30.0% | |
| ! | TTTTCTAACGGTAACAAGTT+TGG | + | chr5_1:21530996-21531015 | Msa0723650:intron | 30.0% |
| !! | CTTTTCTTTTGAGAATGTGA+AGG | - | chr5_1:21531472-21531491 | None:intergenic | 30.0% |
| GAAAAGAATAAGAAAACTGG+GGG | + | chr5_1:21531486-21531505 | Msa0723650:intron | 30.0% | |
| !! | AAAACCTGTTTCTGAATTTC+GGG | - | chr5_1:21531569-21531588 | None:intergenic | 30.0% |
| TTGTGAAACACAATGATATG+GGG | - | chr5_1:21531730-21531749 | None:intergenic | 30.0% | |
| CTTTGTGAAACACAATGATA+TGG | - | chr5_1:21531732-21531751 | None:intergenic | 30.0% | |
| TGAAAGATGGATAGGAAATA+TGG | - | chr5_1:21531813-21531832 | None:intergenic | 30.0% | |
| ATACAAAGTGAAAGATGGAT+AGG | - | chr5_1:21531821-21531840 | None:intergenic | 30.0% | |
| !! | ACATCATCGTTTTAATGAAC+CGG | - | chr5_1:21532090-21532109 | None:intergenic | 30.0% |
| GACAGCGTATAAAAAACAAA+TGG | - | chr5_1:21532193-21532212 | None:intergenic | 30.0% | |
| TGAGAAACGATAACCAACAA+CGG | + | chr5_1:21529458-21529477 | Msa0723650:CDS | 35.0% | |
| TTATTGAGAGTGAAATGTCG+AGG | - | chr5_1:21529601-21529620 | None:intergenic | 35.0% | |
| TGCAAGTCAAATTGAACTCT+TGG | + | chr5_1:21529624-21529643 | Msa0723650:CDS | 35.0% | |
| GAGAAGAACATAACAAAGCA+TGG | - | chr5_1:21529720-21529739 | None:intergenic | 35.0% | |
| ! | TTCACTCCGTTTGTTTCTTT+AGG | + | chr5_1:21529742-21529761 | Msa0723650:intron | 35.0% |
| AATCCAATTGAGCAATTTCC+CGG | - | chr5_1:21529782-21529801 | None:intergenic | 35.0% | |
| ! | AAAAGGTCCGTAATTTTCGA+AGG | + | chr5_1:21529883-21529902 | Msa0723650:intron | 35.0% |
| ! | CCGTAATTTTCGAAGGAAAA+AGG | + | chr5_1:21529890-21529909 | Msa0723650:intron | 35.0% |
| ! | CAGACCTTTTATGACCTAAA+CGG | - | chr5_1:21529917-21529936 | None:intergenic | 35.0% |
| AGGTCATAAAAGGTCTGTTT+AGG | + | chr5_1:21529920-21529939 | Msa0723650:intron | 35.0% | |
| ATAAAGTTAAGGGGCCTAAA+CGG | + | chr5_1:21530171-21530190 | Msa0723650:intron | 35.0% | |
| CGATACTTGAAACCAAGTTA+AGG | + | chr5_1:21530220-21530239 | Msa0723650:intron | 35.0% | |
| ! | AGAATGATCCTCCTCATTTT+CGG | - | chr5_1:21530385-21530404 | None:intergenic | 35.0% |
| ACACTTATAGCAGACATACA+AGG | + | chr5_1:21530553-21530572 | Msa0723650:intron | 35.0% | |
| CACTTATAGCAGACATACAA+GGG | + | chr5_1:21530554-21530573 | Msa0723650:intron | 35.0% | |
| TGTAGAAAGTGGAAACAAGA+TGG | - | chr5_1:21530699-21530718 | None:intergenic | 35.0% | |
| TAGAACAACACCTTCAAATC+TGG | - | chr5_1:21530970-21530989 | None:intergenic | 35.0% | |
| GCTGTCATTATCTGTTACTA+TGG | + | chr5_1:21531018-21531037 | Msa0723650:intron | 35.0% | |
| TGCTGCAATTTAAGCAACTA+TGG | - | chr5_1:21531349-21531368 | None:intergenic | 35.0% | |
| ! | TGGCATTCATCTTTTTGATG+TGG | - | chr5_1:21531662-21531681 | None:intergenic | 35.0% |
| AACACAATGATATGGGGATA+CGG | - | chr5_1:21531724-21531743 | None:intergenic | 35.0% | |
| CGTTGGACTTGTATTCAAAT+TGG | - | chr5_1:21531774-21531793 | None:intergenic | 35.0% | |
| !! | TCAATACATGATAATGGCCA+AGG | + | chr5_1:21531861-21531880 | Msa0723650:intron | 35.0% |
| !! | CATCATCGTTTTAATGAACC+GGG | - | chr5_1:21532089-21532108 | None:intergenic | 35.0% |
| GAAGAAGAATCTTCTTCGTG+AGG | - | chr5_1:21529544-21529563 | None:intergenic | 40.0% | |
| GCGTGACCTAAAGAAACAAA+CGG | - | chr5_1:21529751-21529770 | None:intergenic | 40.0% | |
| AAACCGGGAAATTGCTCAAT+TGG | + | chr5_1:21529776-21529795 | Msa0723650:CDS | 40.0% | |
| AGGTCCGTTTAGGTCATAAA+AGG | + | chr5_1:21529910-21529929 | Msa0723650:intron | 40.0% | |
| !! | CTTGGTTTCAAGTATCGGTT+TGG | - | chr5_1:21530217-21530236 | None:intergenic | 40.0% |
| GCTCAATTAGTCCCTTAACT+TGG | - | chr5_1:21530235-21530254 | None:intergenic | 40.0% | |
| ! | GAATGATCCTCCTCATTTTC+GGG | - | chr5_1:21530384-21530403 | None:intergenic | 40.0% |
| ATCTTCATGCTCACTCACTT+GGG | - | chr5_1:21530607-21530626 | None:intergenic | 40.0% | |
| TATCTTCATGCTCACTCACT+TGG | - | chr5_1:21530608-21530627 | None:intergenic | 40.0% | |
| TGTGGAAACAATGCTGTATC+AGG | + | chr5_1:21530740-21530759 | Msa0723650:intron | 40.0% | |
| GTGGAAACAATGCTGTATCA+GGG | + | chr5_1:21530741-21530760 | Msa0723650:intron | 40.0% | |
| CTGAATATCTGTGTGAACTG+GGG | - | chr5_1:21530942-21530961 | None:intergenic | 40.0% | |
| CCTGAATATCTGTGTGAACT+GGG | - | chr5_1:21530943-21530962 | None:intergenic | 40.0% | |
| TCCTGAATATCTGTGTGAAC+TGG | - | chr5_1:21530944-21530963 | None:intergenic | 40.0% | |
| TTCAGGAACTCCAGATTTGA+AGG | + | chr5_1:21530957-21530976 | Msa0723650:intron | 40.0% | |
| ! | ATGATACTGTTTTCGCCTAC+AGG | + | chr5_1:21531127-21531146 | Msa0723650:intron | 40.0% |
| ! | TGATACTGTTTTCGCCTACA+GGG | + | chr5_1:21531128-21531147 | Msa0723650:intron | 40.0% |
| ACCTAAGCATGATACTTGAG+TGG | + | chr5_1:21531244-21531263 | Msa0723650:intron | 40.0% | |
| ATTGGTGTAGCACTTTAGTG+TGG | + | chr5_1:21531299-21531318 | Msa0723650:intron | 40.0% | |
| TGCCATCGCTTTCATAATTG+CGG | + | chr5_1:21531323-21531342 | Msa0723650:intron | 40.0% | |
| ! | CATCTTTTTGATGTGGCAAC+AGG | - | chr5_1:21531655-21531674 | None:intergenic | 40.0% |
| ATATGGGGATACGGAAGTAA+GGG | - | chr5_1:21531715-21531734 | None:intergenic | 40.0% | |
| !!! | GACTTTTTTCACAGACACGT+TGG | - | chr5_1:21531791-21531810 | None:intergenic | 40.0% |
| ! | ACCGTATTTACGACTTTTCG+CGG | - | chr5_1:21531998-21532017 | None:intergenic | 40.0% |
| CTGCGTAACAAGAACAGAAA+CGG | - | chr5_1:21532038-21532057 | None:intergenic | 40.0% | |
| GAAAGCAGAGCATAGAGCTA+TGG | + | chr5_1:21529486-21529505 | Msa0723650:CDS | 45.0% | |
| GAAGAATCTTCTTCGTGAGG+AGG | - | chr5_1:21529541-21529560 | None:intergenic | 45.0% | |
| AGTGAAATGTCGAGGAGCAA+CGG | - | chr5_1:21529593-21529612 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAAAGAGA+GGG | - | chr5_1:21529685-21529704 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAAGAG+AGG | - | chr5_1:21529686-21529705 | None:intergenic | 45.0% | |
| TTAGGTCACGCTCTCAAAAC+CGG | + | chr5_1:21529760-21529779 | Msa0723650:intron | 45.0% | |
| TCAATTGGATTCGCAAACCC+TGG | + | chr5_1:21529791-21529810 | Msa0723650:CDS | 45.0% | |
| CAATTGGATTCGCAAACCCT+GGG | + | chr5_1:21529792-21529811 | Msa0723650:CDS | 45.0% | |
| CGAAGGAAAAAGGTCCGTTT+AGG | + | chr5_1:21529900-21529919 | Msa0723650:intron | 45.0% | |
| TTATACCGGTCCCGAAAATG+AGG | + | chr5_1:21530371-21530390 | Msa0723650:CDS | 45.0% | |
| TGAGGAGGATCATTCTGTAC+AGG | + | chr5_1:21530389-21530408 | Msa0723650:CDS | 45.0% | |
| GAGGATCATTCTGTACAGGT+GGG | + | chr5_1:21530393-21530412 | Msa0723650:intron | 45.0% | |
| AGGATCATTCTGTACAGGTG+GGG | + | chr5_1:21530394-21530413 | Msa0723650:intron | 45.0% | |
| !! | GAAGAAAGAGGAAAGGTGTC+AGG | - | chr5_1:21530888-21530907 | None:intergenic | 45.0% |
| ACCTTTCCTCTTTCTTCAGC+TGG | + | chr5_1:21530891-21530910 | Msa0723650:intron | 45.0% | |
| TGGCGCAAAAAAAGCCTTCA+AGG | + | chr5_1:21530911-21530930 | Msa0723650:intron | 45.0% | |
| CGCAAAAAAAGCCTTCAAGG+TGG | + | chr5_1:21530914-21530933 | Msa0723650:intron | 45.0% | |
| CCCAGTTCACACAGATATTC+AGG | + | chr5_1:21530940-21530959 | Msa0723650:intron | 45.0% | |
| TTTCGCCTACAGGGTTTCAA+AGG | + | chr5_1:21531137-21531156 | Msa0723650:intron | 45.0% | |
| !! | CAATGCCTTTGAAACCCTGT+AGG | - | chr5_1:21531145-21531164 | None:intergenic | 45.0% |
| ! | CTACAGGGTTTCAAAGGCAT+TGG | + | chr5_1:21531143-21531162 | Msa0723650:intron | 45.0% |
| TACATGGCAGAAACCTATGC+AGG | + | chr5_1:21531173-21531192 | Msa0723650:CDS | 45.0% | |
| GCCACTCAAGTATCATGCTT+AGG | - | chr5_1:21531248-21531267 | None:intergenic | 45.0% | |
| GGAACAGTGAAGGAAGACTA+GGG | - | chr5_1:21531416-21531435 | None:intergenic | 45.0% | |
| AGGAACAGTGAAGGAAGACT+AGG | - | chr5_1:21531417-21531436 | None:intergenic | 45.0% | |
| GACTCAGAAAGGAACAGTGA+AGG | - | chr5_1:21531426-21531445 | None:intergenic | 45.0% | |
| AGAGAGACTGAGACTCAGAA+AGG | - | chr5_1:21531437-21531456 | None:intergenic | 45.0% | |
| CGAACCCGAAATTCAGAAAC+AGG | + | chr5_1:21531562-21531581 | Msa0723650:intron | 45.0% | |
| ATGCCAAGACACCATGTCAA+AGG | + | chr5_1:21531676-21531695 | Msa0723650:intron | 45.0% | |
| CTTCCTTTGACATGGTGTCT+TGG | - | chr5_1:21531682-21531701 | None:intergenic | 45.0% | |
| ATACGGAAGTAAGGGAACTC+TGG | - | chr5_1:21531707-21531726 | None:intergenic | 45.0% | |
| GATATGGGGATACGGAAGTA+AGG | - | chr5_1:21531716-21531735 | None:intergenic | 45.0% | |
| GATCGCGAGTTTAACTACCT+TGG | - | chr5_1:21531881-21531900 | None:intergenic | 45.0% | |
| GCCGCGAAAAGTCGTAAATA+CGG | + | chr5_1:21531994-21532013 | Msa0723650:intron | 45.0% | |
| CGTAACAAGAACAGAAACGG+CGG | - | chr5_1:21532035-21532054 | None:intergenic | 45.0% | |
| !! | CGTTTTAATGAACCGGGTCA+TGG | - | chr5_1:21532083-21532102 | None:intergenic | 45.0% |
| !! | TTATTTAATTATTATTAGTT+TGG | - | chr5_1:21530052-21530071 | None:intergenic | 5.0% |
| !! | AATAATAATTAAATAAGTTA+AGG | + | chr5_1:21530056-21530075 | Msa0723650:intron | 5.0% |
| !! | ATAATAATTAAATAAGTTAA+GGG | + | chr5_1:21530057-21530076 | Msa0723650:intron | 5.0% |
| !!! | TAATTAATTATTTTTTTTGA+AGG | + | chr5_1:21532279-21532298 | Msa0723650:intron | 5.0% |
| !!! | AATTAATTATTTTTTTTGAA+GGG | + | chr5_1:21532280-21532299 | Msa0723650:intron | 5.0% |
| CTGCTTTCTGCAACCGTTGT+TGG | - | chr5_1:21529474-21529493 | None:intergenic | 50.0% | |
| AGAGCATAGAGCTATGGCGA+CGG | + | chr5_1:21529492-21529511 | Msa0723650:CDS | 50.0% | |
| ! | AGGAGGTTTTCTAACGTCGC+CGG | - | chr5_1:21529524-21529543 | None:intergenic | 50.0% |
| GTGAAATGTCGAGGAGCAAC+GGG | - | chr5_1:21529592-21529611 | None:intergenic | 50.0% | |
| ! | GGGAAGTACAGTACCAACTC+CGG | - | chr5_1:21529665-21529684 | None:intergenic | 50.0% |
| TAGGTCACGCTCTCAAAACC+GGG | + | chr5_1:21529761-21529780 | Msa0723650:intron | 50.0% | |
| !! | ATCCTCCTCATTTTCGGGAC+CGG | - | chr5_1:21530379-21530398 | None:intergenic | 50.0% |
| GGAGGATCATTCTGTACAGG+TGG | + | chr5_1:21530392-21530411 | Msa0723650:intron | 50.0% | |
| GCCAGCTGAAGAAAGAGGAA+AGG | - | chr5_1:21530895-21530914 | None:intergenic | 50.0% | |
| TTTGCGCCAGCTGAAGAAAG+AGG | - | chr5_1:21530900-21530919 | None:intergenic | 50.0% | |
| !! | AGGCATTGGAGAAGCGTACA+TGG | + | chr5_1:21531157-21531176 | Msa0723650:CDS | 50.0% |
| AACCTATGCAGGCTTCAGAC+AGG | + | chr5_1:21531184-21531203 | Msa0723650:CDS | 50.0% | |
| CACCAATGCCTTGCCTATAG+CGG | - | chr5_1:21531286-21531305 | None:intergenic | 50.0% | |
| GGCCGCAATTATGAAAGCGA+TGG | - | chr5_1:21531328-21531347 | None:intergenic | 50.0% | |
| ACTGGGGGAGAAACAATGCA+AGG | + | chr5_1:21531501-21531520 | Msa0723650:intron | 50.0% | |
| !! | CTCTGGAGCTTCCTTTGACA+TGG | - | chr5_1:21531690-21531709 | None:intergenic | 50.0% |
| AAACTCGCGATCCAACTCGT+AGG | + | chr5_1:21531889-21531908 | Msa0723650:intron | 50.0% | |
| AGTCGTACGATCCTACGAGT+TGG | - | chr5_1:21531903-21531922 | None:intergenic | 50.0% | |
| ACATGGCCGGAATCGGAATT+TGG | + | chr5_1:21531954-21531973 | Msa0723650:intron | 50.0% | |
| TTACGCAGAGATGTTGCTCG+CGG | + | chr5_1:21532050-21532069 | Msa0723650:intron | 50.0% | |
| TTGGATATCCTCGTCGTCGC+CGG | + | chr5_1:21529643-21529662 | Msa0723650:CDS | 55.0% | |
| TACCGGTCCCGAAAATGAGG+AGG | + | chr5_1:21530374-21530393 | Msa0723650:CDS | 55.0% | |
| ! | GACCTGTCTGAAGCCTGCAT+AGG | - | chr5_1:21531189-21531208 | None:intergenic | 55.0% |
| TGAGTGGCATATGCACCCCA+TGG | + | chr5_1:21531260-21531279 | Msa0723650:intron | 55.0% | |
| CCATGTTCCAGCACGCAAAG+GGG | - | chr5_1:21531940-21531959 | None:intergenic | 55.0% | |
| GCCATGTTCCAGCACGCAAA+GGG | - | chr5_1:21531941-21531960 | None:intergenic | 55.0% | |
| TTTGCGTGCTGGAACATGGC+CGG | + | chr5_1:21531941-21531960 | Msa0723650:intron | 55.0% | |
| TGCTGGAACATGGCCGGAAT+CGG | + | chr5_1:21531947-21531966 | Msa0723650:intron | 55.0% | |
| TGGCCGGAATCGGAATTTGG+TGG | + | chr5_1:21531957-21531976 | Msa0723650:intron | 55.0% | |
| GGCCGGAATCGGAATTTGGT+GGG | + | chr5_1:21531958-21531977 | Msa0723650:intron | 55.0% | |
| CGCCCACCAAATTCCGATTC+CGG | - | chr5_1:21531963-21531982 | None:intergenic | 55.0% | |
| ! | GAATCGGAATTTGGTGGGCG+CGG | + | chr5_1:21531963-21531982 | Msa0723650:intron | 55.0% |
| TACGCAGAGATGTTGCTCGC+GGG | + | chr5_1:21532051-21532070 | Msa0723650:intron | 55.0% | |
| GCATAGAGCTATGGCGACGG+TGG | + | chr5_1:21529495-21529514 | Msa0723650:CDS | 60.0% | |
| GCTATGGCGACGGTGGTTTC+CGG | + | chr5_1:21529502-21529521 | Msa0723650:CDS | 60.0% | |
| TCGAGGAGCAACGGGATCGA+GGG | - | chr5_1:21529584-21529603 | None:intergenic | 60.0% | |
| ! | GAACTGGGGCACCACCTTGA+AGG | - | chr5_1:21530928-21530947 | None:intergenic | 60.0% |
| ATGCACCCCATGGCCGCTAT+AGG | + | chr5_1:21531270-21531289 | Msa0723650:intron | 60.0% | |
| CCTTGCCTATAGCGGCCATG+GGG | - | chr5_1:21531278-21531297 | None:intergenic | 60.0% | |
| GCCTTGCCTATAGCGGCCAT+GGG | - | chr5_1:21531279-21531298 | None:intergenic | 60.0% | |
| TGCCTTGCCTATAGCGGCCA+TGG | - | chr5_1:21531280-21531299 | None:intergenic | 60.0% | |
| GGCCGCTATAGGCAAGGCAT+TGG | + | chr5_1:21531281-21531300 | Msa0723650:intron | 60.0% | |
| TGTTCCAGCACGCAAAGGGG+TGG | - | chr5_1:21531937-21531956 | None:intergenic | 60.0% | |
| CCCCTTTGCGTGCTGGAACA+TGG | + | chr5_1:21531937-21531956 | Msa0723650:intron | 60.0% | |
| GGCCATGTTCCAGCACGCAA+AGG | - | chr5_1:21531942-21531961 | None:intergenic | 60.0% | |
| ! | ACGACTTTTCGCGGCGATCC+TGG | - | chr5_1:21531989-21532008 | None:intergenic | 60.0% |
| CAGAGATGTTGCTCGCGGGT+CGG | + | chr5_1:21532055-21532074 | Msa0723650:intron | 60.0% | |
| AGGAGCAACGGGATCGAGGG+CGG | - | chr5_1:21529581-21529600 | None:intergenic | 65.0% | |
| GTCGAGGAGCAACGGGATCG+AGG | - | chr5_1:21529585-21529604 | None:intergenic | 65.0% | |
| ATCCTCGTCGTCGCCGGAGT+TGG | + | chr5_1:21529649-21529668 | Msa0723650:CDS | 65.0% | |
| TACCAACTCCGGCGACGACG+AGG | - | chr5_1:21529654-21529673 | None:intergenic | 65.0% | |
| CCCCATGGCCGCTATAGGCA+AGG | + | chr5_1:21531275-21531294 | Msa0723650:intron | 65.0% | |
| CTTGCCACCCCTTTGCGTGC+TGG | + | chr5_1:21531930-21531949 | Msa0723650:intron | 65.0% | |
| AGCAACGGGATCGAGGGCGG+TGG | - | chr5_1:21529578-21529597 | None:intergenic | 70.0% | |
| ! | GGAATTTGGTGGGCGCGGCC+AGG | + | chr5_1:21531968-21531987 | Msa0723650:intron | 70.0% |
| CGCGGGTCGGATCCATGACC+CGG | + | chr5_1:21532068-21532087 | Msa0723650:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21529415 | 21532318 | 21529415 | ID=Msa0723650;Name=Msa0723650 |
| chr5_1 | mRNA | 21529415 | 21532318 | 21529415 | ID=Msa0723650-mRNA-1;Parent=Msa0723650;Name=Msa0723650-mRNA-1;_AED=0.41;_eAED=0.41;_QI=42|0.5|0.8|0.8|1|1|5|0|135 |
| chr5_1 | exon | 21529415 | 21529670 | 21529415 | ID=Msa0723650-mRNA-1:exon:8154;Parent=Msa0723650-mRNA-1 |
| chr5_1 | exon | 21529764 | 21529813 | 21529764 | ID=Msa0723650-mRNA-1:exon:8155;Parent=Msa0723650-mRNA-1 |
| chr5_1 | exon | 21530342 | 21530410 | 21530342 | ID=Msa0723650-mRNA-1:exon:8156;Parent=Msa0723650-mRNA-1 |
| chr5_1 | exon | 21531149 | 21531205 | 21531149 | ID=Msa0723650-mRNA-1:exon:8157;Parent=Msa0723650-mRNA-1 |
| chr5_1 | exon | 21532301 | 21532318 | 21532301 | ID=Msa0723650-mRNA-1:exon:8158;Parent=Msa0723650-mRNA-1 |
| chr5_1 | five_prime_UTR | 21529415 | 21529456 | 21529415 | ID=Msa0723650-mRNA-1:five_prime_utr;Parent=Msa0723650-mRNA-1 |
| chr5_1 | CDS | 21529457 | 21529670 | 21529457 | ID=Msa0723650-mRNA-1:cds;Parent=Msa0723650-mRNA-1 |
| chr5_1 | CDS | 21529764 | 21529813 | 21529764 | ID=Msa0723650-mRNA-1:cds;Parent=Msa0723650-mRNA-1 |
| chr5_1 | CDS | 21530342 | 21530410 | 21530342 | ID=Msa0723650-mRNA-1:cds;Parent=Msa0723650-mRNA-1 |
| chr5_1 | CDS | 21531149 | 21531205 | 21531149 | ID=Msa0723650-mRNA-1:cds;Parent=Msa0723650-mRNA-1 |
| chr5_1 | CDS | 21532301 | 21532318 | 21532301 | ID=Msa0723650-mRNA-1:cds;Parent=Msa0723650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
