AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329700 MtrunA17_Chr2g0325521 88.722 133 15 0 42 174 89 221 6.67e-83 245
Msa1329700 MtrunA17_Chr4g0041051 68.182 132 42 0 43 174 99 230 3.40e-63 195
Msa1329700 MtrunA17_Chr4g0045901 42.105 133 76 1 43 175 107 238 3.98e-31 113
Msa1329700 MtrunA17_Chr1g0198801 37.778 135 73 3 42 172 188 315 8.68e-20 84.7
Msa1329700 MtrunA17_Chr7g0255961 38.060 134 76 3 42 174 105 232 7.84e-19 80.9
Msa1329700 MtrunA17_Chr2g0283714 45.000 80 41 1 44 123 16 92 1.09e-16 72.4
Msa1329700 MtrunA17_Chr3g0113721 33.621 116 65 3 38 143 67 180 4.33e-15 70.5
Msa1329700 MtrunA17_Chr5g0427361 30.709 127 62 2 40 141 65 190 2.31e-12 63.2
Msa1329700 MtrunA17_Chr8g0384241 96.296 27 1 0 17 43 365 391 5.18e-12 63.2
Msa1329700 MtrunA17_Chr5g0412371 32.283 127 61 5 28 139 58 174 6.30e-12 61.6
Msa1329700 MtrunA17_Chr1g0152991 85.714 28 4 0 17 44 32 59 2.19e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329700 AT1G68810.1 37.037 135 80 3 40 172 202 333 5.48e-20 85.9
Msa1329700 AT3G25710.1 40.323 124 63 4 42 160 162 279 2.19e-19 84.0
Msa1329700 AT2G40200.1 35.577 104 60 2 43 141 94 195 4.17e-13 65.9
Msa1329700 AT3G56770.1 33.019 106 68 2 42 145 75 179 1.88e-12 63.5
Msa1329700 AT2G41130.1 30.147 136 85 3 42 174 97 225 2.94e-12 63.5

Find 27 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCATCTTATGATAATA+AGG 0.187887 8_4:+48424565 Msa1329700:CDS
CTTATCTCATGACTGTCTTT+TGG 0.232859 8_4:-48424432 None:intergenic
TCACAAGAAGGTGGATTAAA+TGG 0.236239 8_4:+48424462 Msa1329700:CDS
AGTGATGCTCTAATTGAATA+AGG 0.252736 8_4:-48424489 None:intergenic
AACCTGCGTTAAATCACTTT+TGG 0.274853 8_4:-48423922 None:intergenic
ATACTGTCAGTGTCTATAAA+AGG 0.332323 8_4:+48422650 None:intergenic
TGTAATAACTTCAGCTAGTA+AGG 0.369694 8_4:-48424355 None:intergenic
ACTTGGTGAACTAACCATTC+TGG 0.399822 8_4:-48422704 None:intergenic
AAGGGCAGAGAATGCAACTT+TGG 0.427512 8_4:+48424584 Msa1329700:CDS
AGGGCAGAGAATGCAACTTT+GGG 0.451743 8_4:+48424585 Msa1329700:CDS
GTGATGCTCTAATTGAATAA+GGG 0.459428 8_4:-48424488 None:intergenic
GGCGAACAGTTAGCATGGCC+AGG 0.475315 8_4:-48422683 None:intergenic
ACTTCATCTTATGATAATAA+GGG 0.489015 8_4:+48424566 Msa1329700:CDS
GGATGGCCTATGCGCGATGA+TGG 0.495602 8_4:+48423885 Msa1329700:CDS
GATGGCCTATGCGCGATGAT+GGG 0.500818 8_4:+48423886 Msa1329700:CDS
ATGCTAACTGTTCGCCAGAA+TGG 0.509485 8_4:+48422690 Msa1329700:CDS
CTTATATCAGACAACAAACC+TGG 0.520795 8_4:-48424528 None:intergenic
CTATGTTGTGAACACAAACC+AGG 0.553984 8_4:+48424510 Msa1329700:CDS
AATGCAGCACAAGCAAGTGA+AGG 0.583141 8_4:+48424399 Msa1329700:CDS
ATGCAGCACAAGCAAGTGAA+GGG 0.608119 8_4:+48424400 Msa1329700:CDS
AAATCCCCATCATCGCGCAT+AGG 0.609170 8_4:-48423891 None:intergenic
AGATTTGAATCACAAGAAGG+TGG 0.613421 8_4:+48424453 Msa1329700:CDS
ATCCAAAAGTGATTTAACGC+AGG 0.620298 8_4:+48423920 Msa1329700:CDS
ATAAGATTTGAATCACAAGA+AGG 0.621854 8_4:+48424450 Msa1329700:CDS
GCAGAGAATGCAACTTTGGG+AGG 0.622770 8_4:+48424588 Msa1329700:CDS
ATTCTGGCGAACAGTTAGCA+TGG 0.660492 8_4:-48422688 None:intergenic
ATAAAAGGCAGAGAACAACC+TGG 0.686070 8_4:+48422665 Msa1329700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAATGCTTTATTTT+TGG + chr8_4:48423969-48423988 Msa1329700:intron 10.0%
!!! ATTTTAAAATGCTTTATTTT+TGG + chr8_4:48423969-48423988 Msa1329700:intron 10.0%
!!! ATATGTTTTATATAAAGTGT+AGG + chr8_4:48422947-48422966 Msa1329700:intron 15.0%
!!! TTTTTAATTATACTTATTGG+TGG + chr8_4:48423046-48423065 Msa1329700:intron 15.0%
!!! TTTTAATTATACTTATTGGT+GGG + chr8_4:48423047-48423066 Msa1329700:intron 15.0%
!! GAATATAGTATTATTTAGAA+TGG - chr8_4:48423745-48423764 None:intergenic 15.0%
!!! AATTTTCTTTTCTAAAAGAA+GGG + chr8_4:48424120-48424139 Msa1329700:intron 15.0%
!!! ATATGTTTTATATAAAGTGT+AGG + chr8_4:48422947-48422966 Msa1329700:intron 15.0%
!!! TTTTTAATTATACTTATTGG+TGG + chr8_4:48423046-48423065 Msa1329700:intron 15.0%
!!! TTTTAATTATACTTATTGGT+GGG + chr8_4:48423047-48423066 Msa1329700:intron 15.0%
!! GAATATAGTATTATTTAGAA+TGG - chr8_4:48423745-48423764 None:intergenic 15.0%
!!! AATTTTCTTTTCTAAAAGAA+GGG + chr8_4:48424120-48424139 Msa1329700:intron 15.0%
!!! TTTGAAATTTGAAATGTTTG+CGG + chr8_4:48423173-48423192 Msa1329700:intron 20.0%
!! AGAAACATATAATCATTTGA+AGG + chr8_4:48423260-48423279 Msa1329700:intron 20.0%
!! GAAACATATAATCATTTGAA+GGG + chr8_4:48423261-48423280 Msa1329700:intron 20.0%
!!! AAAAAAAACCTACTTTTTCT+GGG - chr8_4:48423698-48423717 None:intergenic 20.0%
!!! AAAAAAAAACCTACTTTTTC+TGG - chr8_4:48423699-48423718 None:intergenic 20.0%
!!! GTTATATTTTAAGAAGTAAC+TGG + chr8_4:48423942-48423961 Msa1329700:intron 20.0%
!! ACTTATATAAATTCCATATC+AGG + chr8_4:48423993-48424012 Msa1329700:intron 20.0%
!! CTTATATAAATTCCATATCA+GGG + chr8_4:48423994-48424013 Msa1329700:intron 20.0%
!!! CAATTTTCTTTTCTAAAAGA+AGG + chr8_4:48424119-48424138 Msa1329700:intron 20.0%
!!! GGAATGGAATAATTTAATTT+TGG + chr8_4:48424141-48424160 Msa1329700:intron 20.0%
!! TTTGTCCAACTAATTTAAAA+AGG - chr8_4:48424331-48424350 None:intergenic 20.0%
!! ACTTCATCTTATGATAATAA+GGG + chr8_4:48424566-48424585 Msa1329700:CDS 20.0%
!!! TTTGAAATTTGAAATGTTTG+CGG + chr8_4:48423173-48423192 Msa1329700:intron 20.0%
!! AGAAACATATAATCATTTGA+AGG + chr8_4:48423260-48423279 Msa1329700:intron 20.0%
!! GAAACATATAATCATTTGAA+GGG + chr8_4:48423261-48423280 Msa1329700:intron 20.0%
!!! AAAAAAAACCTACTTTTTCT+GGG - chr8_4:48423698-48423717 None:intergenic 20.0%
!!! AAAAAAAAACCTACTTTTTC+TGG - chr8_4:48423699-48423718 None:intergenic 20.0%
!!! GTTATATTTTAAGAAGTAAC+TGG + chr8_4:48423942-48423961 Msa1329700:intron 20.0%
!! ACTTATATAAATTCCATATC+AGG + chr8_4:48423993-48424012 Msa1329700:intron 20.0%
!! CTTATATAAATTCCATATCA+GGG + chr8_4:48423994-48424013 Msa1329700:intron 20.0%
!!! CAATTTTCTTTTCTAAAAGA+AGG + chr8_4:48424119-48424138 Msa1329700:intron 20.0%
!!! GGAATGGAATAATTTAATTT+TGG + chr8_4:48424141-48424160 Msa1329700:intron 20.0%
!! TTTGTCCAACTAATTTAAAA+AGG - chr8_4:48424331-48424350 None:intergenic 20.0%
!! ACTTCATCTTATGATAATAA+GGG + chr8_4:48424566-48424585 Msa1329700:CDS 20.0%
! AATAACTCGATATAGAGAAT+TGG + chr8_4:48422922-48422941 Msa1329700:intron 25.0%
! ATTTATTTGATCATCTGTGA+TGG + chr8_4:48422994-48423013 Msa1329700:intron 25.0%
! TTTATTTGATCATCTGTGAT+GGG + chr8_4:48422995-48423014 Msa1329700:intron 25.0%
! ACAAATGTTAGAATAGAGAA+GGG - chr8_4:48423216-48423235 None:intergenic 25.0%
! TACAAATGTTAGAATAGAGA+AGG - chr8_4:48423217-48423236 None:intergenic 25.0%
! ATAATCATTTGAAGGGAAAA+TGG + chr8_4:48423268-48423287 Msa1329700:intron 25.0%
!! TGCATTTTGTTAACTGTTTA+TGG + chr8_4:48423334-48423353 Msa1329700:intron 25.0%
!! GCATTTTGTTAACTGTTTAT+GGG + chr8_4:48423335-48423354 Msa1329700:intron 25.0%
! CATCCCCTATATATTAATTA+GGG - chr8_4:48423361-48423380 None:intergenic 25.0%
! TCATCCCCTATATATTAATT+AGG - chr8_4:48423362-48423381 None:intergenic 25.0%
! AAATGGAGATGAAATGATAT+TGG + chr8_4:48423420-48423439 Msa1329700:intron 25.0%
! GAAATGATATTGGTATAGTA+AGG + chr8_4:48423430-48423449 Msa1329700:intron 25.0%
!! TTTTTGTGTAATGTAGCTTT+TGG + chr8_4:48424078-48424097 Msa1329700:intron 25.0%
! TCTACACAAATATACAAACA+TGG + chr8_4:48424266-48424285 Msa1329700:intron 25.0%
!! GTGTACCTTTTTAAATTAGT+TGG + chr8_4:48424323-48424342 Msa1329700:intron 25.0%
! ATAAGATTTGAATCACAAGA+AGG + chr8_4:48424450-48424469 Msa1329700:CDS 25.0%
! CACTTCATCTTATGATAATA+AGG + chr8_4:48424565-48424584 Msa1329700:CDS 25.0%
! AATAACTCGATATAGAGAAT+TGG + chr8_4:48422922-48422941 Msa1329700:intron 25.0%
! ATTTATTTGATCATCTGTGA+TGG + chr8_4:48422994-48423013 Msa1329700:intron 25.0%
! TTTATTTGATCATCTGTGAT+GGG + chr8_4:48422995-48423014 Msa1329700:intron 25.0%
! ACAAATGTTAGAATAGAGAA+GGG - chr8_4:48423216-48423235 None:intergenic 25.0%
! TACAAATGTTAGAATAGAGA+AGG - chr8_4:48423217-48423236 None:intergenic 25.0%
! ATAATCATTTGAAGGGAAAA+TGG + chr8_4:48423268-48423287 Msa1329700:intron 25.0%
!! TGCATTTTGTTAACTGTTTA+TGG + chr8_4:48423334-48423353 Msa1329700:intron 25.0%
!! GCATTTTGTTAACTGTTTAT+GGG + chr8_4:48423335-48423354 Msa1329700:intron 25.0%
! CATCCCCTATATATTAATTA+GGG - chr8_4:48423361-48423380 None:intergenic 25.0%
! TCATCCCCTATATATTAATT+AGG - chr8_4:48423362-48423381 None:intergenic 25.0%
! AAATGGAGATGAAATGATAT+TGG + chr8_4:48423420-48423439 Msa1329700:intron 25.0%
! GAAATGATATTGGTATAGTA+AGG + chr8_4:48423430-48423449 Msa1329700:intron 25.0%
!! TTTTTGTGTAATGTAGCTTT+TGG + chr8_4:48424078-48424097 Msa1329700:intron 25.0%
! TCTACACAAATATACAAACA+TGG + chr8_4:48424266-48424285 Msa1329700:intron 25.0%
!! GTGTACCTTTTTAAATTAGT+TGG + chr8_4:48424323-48424342 Msa1329700:intron 25.0%
! ATAAGATTTGAATCACAAGA+AGG + chr8_4:48424450-48424469 Msa1329700:CDS 25.0%
! CACTTCATCTTATGATAATA+AGG + chr8_4:48424565-48424584 Msa1329700:CDS 25.0%
!!! TTTTTGTTGCTTTCTTGACT+TGG - chr8_4:48422724-48422743 None:intergenic 30.0%
AGTCAAGAAAGCAACAAAAA+TGG + chr8_4:48422724-48422743 Msa1329700:intron 30.0%
ATGGTTAATATAGAAGTTGC+TGG + chr8_4:48422743-48422762 Msa1329700:intron 30.0%
TGGTTAATATAGAAGTTGCT+GGG + chr8_4:48422744-48422763 Msa1329700:intron 30.0%
!! AGTTTTGTCAACAAGTATGT+CGG + chr8_4:48422808-48422827 Msa1329700:intron 30.0%
AGAAGTTGCATTTATGTTGA+CGG + chr8_4:48422876-48422895 Msa1329700:intron 30.0%
TTATTTGATCATCTGTGATG+GGG + chr8_4:48422996-48423015 Msa1329700:intron 30.0%
!!! TTGAAGGGAAAATGGTTTTT+TGG + chr8_4:48423276-48423295 Msa1329700:intron 30.0%
ATGGGCCCTAATTAATATAT+AGG + chr8_4:48423353-48423372 Msa1329700:intron 30.0%
TGGGCCCTAATTAATATATA+GGG + chr8_4:48423354-48423373 Msa1329700:intron 30.0%
TGGTATAGTAAGGATTGATA+AGG + chr8_4:48423440-48423459 Msa1329700:intron 30.0%
AATTGAACGTGCTAAGTAAA+TGG - chr8_4:48423567-48423586 None:intergenic 30.0%
TCAAGTACTTATTTAGAGAG+TGG + chr8_4:48423787-48423806 Msa1329700:intron 30.0%
TTGATGTAGCACTAAAAGAA+TGG + chr8_4:48423834-48423853 Msa1329700:intron 30.0%
!!! AATGTAGCTTTTGGTTTTCA+AGG + chr8_4:48424087-48424106 Msa1329700:intron 30.0%
!!! ATGTAGCTTTTGGTTTTCAA+GGG + chr8_4:48424088-48424107 Msa1329700:intron 30.0%
!! TCTTTTCTAAAAGAAGGGAA+TGG + chr8_4:48424125-48424144 Msa1329700:intron 30.0%
AAGTGTAAGCATAACTAAGT+TGG - chr8_4:48424228-48424247 None:intergenic 30.0%
AACTTAGTTATGCTTACACT+TGG + chr8_4:48424227-48424246 Msa1329700:intron 30.0%
TGTAATAACTTCAGCTAGTA+AGG - chr8_4:48424358-48424377 None:intergenic 30.0%
GTGATGCTCTAATTGAATAA+GGG - chr8_4:48424491-48424510 None:intergenic 30.0%
AGTGATGCTCTAATTGAATA+AGG - chr8_4:48424492-48424511 None:intergenic 30.0%
!!! TTTTTGTTGCTTTCTTGACT+TGG - chr8_4:48422724-48422743 None:intergenic 30.0%
AGTCAAGAAAGCAACAAAAA+TGG + chr8_4:48422724-48422743 Msa1329700:intron 30.0%
ATGGTTAATATAGAAGTTGC+TGG + chr8_4:48422743-48422762 Msa1329700:intron 30.0%
TGGTTAATATAGAAGTTGCT+GGG + chr8_4:48422744-48422763 Msa1329700:intron 30.0%
!! AGTTTTGTCAACAAGTATGT+CGG + chr8_4:48422808-48422827 Msa1329700:intron 30.0%
AGAAGTTGCATTTATGTTGA+CGG + chr8_4:48422876-48422895 Msa1329700:intron 30.0%
TTATTTGATCATCTGTGATG+GGG + chr8_4:48422996-48423015 Msa1329700:intron 30.0%
!!! TTGAAGGGAAAATGGTTTTT+TGG + chr8_4:48423276-48423295 Msa1329700:intron 30.0%
ATGGGCCCTAATTAATATAT+AGG + chr8_4:48423353-48423372 Msa1329700:intron 30.0%
TGGGCCCTAATTAATATATA+GGG + chr8_4:48423354-48423373 Msa1329700:intron 30.0%
TGGTATAGTAAGGATTGATA+AGG + chr8_4:48423440-48423459 Msa1329700:intron 30.0%
AATTGAACGTGCTAAGTAAA+TGG - chr8_4:48423567-48423586 None:intergenic 30.0%
TCAAGTACTTATTTAGAGAG+TGG + chr8_4:48423787-48423806 Msa1329700:intron 30.0%
TTGATGTAGCACTAAAAGAA+TGG + chr8_4:48423834-48423853 Msa1329700:intron 30.0%
!!! AATGTAGCTTTTGGTTTTCA+AGG + chr8_4:48424087-48424106 Msa1329700:intron 30.0%
!!! ATGTAGCTTTTGGTTTTCAA+GGG + chr8_4:48424088-48424107 Msa1329700:intron 30.0%
!! TCTTTTCTAAAAGAAGGGAA+TGG + chr8_4:48424125-48424144 Msa1329700:intron 30.0%
AAGTGTAAGCATAACTAAGT+TGG - chr8_4:48424228-48424247 None:intergenic 30.0%
AACTTAGTTATGCTTACACT+TGG + chr8_4:48424227-48424246 Msa1329700:intron 30.0%
TGTAATAACTTCAGCTAGTA+AGG - chr8_4:48424358-48424377 None:intergenic 30.0%
GTGATGCTCTAATTGAATAA+GGG - chr8_4:48424491-48424510 None:intergenic 30.0%
AGTGATGCTCTAATTGAATA+AGG - chr8_4:48424492-48424511 None:intergenic 30.0%
GGTTAATATAGAAGTTGCTG+GGG + chr8_4:48422745-48422764 Msa1329700:intron 35.0%
GAAGTTGCATTTATGTTGAC+GGG + chr8_4:48422877-48422896 Msa1329700:intron 35.0%
!!! CATTTATGTTGACGGGTTTT+GGG + chr8_4:48422884-48422903 Msa1329700:intron 35.0%
ACGAACTTGTGATATAGTGT+CGG + chr8_4:48423119-48423138 Msa1329700:intron 35.0%
GGGCCCTAATTAATATATAG+GGG + chr8_4:48423355-48423374 Msa1329700:intron 35.0%
TTGGAATTGATGAGAGCAAA+TGG + chr8_4:48423403-48423422 Msa1329700:intron 35.0%
CGTGCTAAGTAAATGGAATA+GGG - chr8_4:48423560-48423579 None:intergenic 35.0%
ACGTGCTAAGTAAATGGAAT+AGG - chr8_4:48423561-48423580 None:intergenic 35.0%
!!! AAAACCTACTTTTTCTGGGT+AGG - chr8_4:48423694-48423713 None:intergenic 35.0%
TTTAGAGAGTGGTTATGCAA+AGG + chr8_4:48423798-48423817 Msa1329700:intron 35.0%
TTAGAGAGTGGTTATGCAAA+GGG + chr8_4:48423799-48423818 Msa1329700:intron 35.0%
!! TCACTTGATTGCTTTTCTCT+TGG + chr8_4:48423864-48423883 Msa1329700:CDS 35.0%
!! TTGATTGCTTTTCTCTTGGA+TGG + chr8_4:48423868-48423887 Msa1329700:CDS 35.0%
ATCCAAAAGTGATTTAACGC+AGG + chr8_4:48423920-48423939 Msa1329700:CDS 35.0%
! AACCTGCGTTAAATCACTTT+TGG - chr8_4:48423925-48423944 None:intergenic 35.0%
AATTCCATATCAGGGAAGAA+AGG + chr8_4:48424002-48424021 Msa1329700:intron 35.0%
ATTCCATATCAGGGAAGAAA+GGG + chr8_4:48424003-48424022 Msa1329700:intron 35.0%
! CTTATCTCATGACTGTCTTT+TGG - chr8_4:48424435-48424454 None:intergenic 35.0%
AGATTTGAATCACAAGAAGG+TGG + chr8_4:48424453-48424472 Msa1329700:CDS 35.0%
!! TCACAAGAAGGTGGATTAAA+TGG + chr8_4:48424462-48424481 Msa1329700:CDS 35.0%
CTTATATCAGACAACAAACC+TGG - chr8_4:48424531-48424550 None:intergenic 35.0%
GGTTAATATAGAAGTTGCTG+GGG + chr8_4:48422745-48422764 Msa1329700:intron 35.0%
GAAGTTGCATTTATGTTGAC+GGG + chr8_4:48422877-48422896 Msa1329700:intron 35.0%
!!! CATTTATGTTGACGGGTTTT+GGG + chr8_4:48422884-48422903 Msa1329700:intron 35.0%
ACGAACTTGTGATATAGTGT+CGG + chr8_4:48423119-48423138 Msa1329700:intron 35.0%
GGGCCCTAATTAATATATAG+GGG + chr8_4:48423355-48423374 Msa1329700:intron 35.0%
TTGGAATTGATGAGAGCAAA+TGG + chr8_4:48423403-48423422 Msa1329700:intron 35.0%
CGTGCTAAGTAAATGGAATA+GGG - chr8_4:48423560-48423579 None:intergenic 35.0%
ACGTGCTAAGTAAATGGAAT+AGG - chr8_4:48423561-48423580 None:intergenic 35.0%
!!! AAAACCTACTTTTTCTGGGT+AGG - chr8_4:48423694-48423713 None:intergenic 35.0%
TTTAGAGAGTGGTTATGCAA+AGG + chr8_4:48423798-48423817 Msa1329700:intron 35.0%
TTAGAGAGTGGTTATGCAAA+GGG + chr8_4:48423799-48423818 Msa1329700:intron 35.0%
!! TCACTTGATTGCTTTTCTCT+TGG + chr8_4:48423864-48423883 Msa1329700:CDS 35.0%
!! TTGATTGCTTTTCTCTTGGA+TGG + chr8_4:48423868-48423887 Msa1329700:CDS 35.0%
ATCCAAAAGTGATTTAACGC+AGG + chr8_4:48423920-48423939 Msa1329700:CDS 35.0%
! AACCTGCGTTAAATCACTTT+TGG - chr8_4:48423925-48423944 None:intergenic 35.0%
AATTCCATATCAGGGAAGAA+AGG + chr8_4:48424002-48424021 Msa1329700:intron 35.0%
ATTCCATATCAGGGAAGAAA+GGG + chr8_4:48424003-48424022 Msa1329700:intron 35.0%
! CTTATCTCATGACTGTCTTT+TGG - chr8_4:48424435-48424454 None:intergenic 35.0%
AGATTTGAATCACAAGAAGG+TGG + chr8_4:48424453-48424472 Msa1329700:CDS 35.0%
!! TCACAAGAAGGTGGATTAAA+TGG + chr8_4:48424462-48424481 Msa1329700:CDS 35.0%
CTTATATCAGACAACAAACC+TGG - chr8_4:48424531-48424550 None:intergenic 35.0%
ATAAAAGGCAGAGAACAACC+TGG + chr8_4:48422665-48422684 Msa1329700:CDS 40.0%
! ACTTGGTGAACTAACCATTC+TGG - chr8_4:48422707-48422726 None:intergenic 40.0%
!!! GCATTTATGTTGACGGGTTT+TGG + chr8_4:48422883-48422902 Msa1329700:intron 40.0%
CGAACTTGTGATATAGTGTC+GGG + chr8_4:48423120-48423139 Msa1329700:intron 40.0%
! GAAGATGAAGTTGCTGATTG+TGG + chr8_4:48423380-48423399 Msa1329700:intron 40.0%
! ATGAAGTTGCTGATTGTGGT+TGG + chr8_4:48423384-48423403 Msa1329700:intron 40.0%
AAATCTACACACACGTGACA+TGG - chr8_4:48423498-48423517 None:intergenic 40.0%
TGAACCTACCCAGAAAAAGT+AGG + chr8_4:48423687-48423706 Msa1329700:intron 40.0%
TAGAGAGTGGTTATGCAAAG+GGG + chr8_4:48423800-48423819 Msa1329700:intron 40.0%
AGCACTAAAAGAATGGATGC+AGG + chr8_4:48423841-48423860 Msa1329700:intron 40.0%
! AAGAAAGGGTGCATCAAGAA+AGG + chr8_4:48424017-48424036 Msa1329700:intron 40.0%
! AGAAAGGGTGCATCAAGAAA+GGG + chr8_4:48424018-48424037 Msa1329700:intron 40.0%
GCTCATCAGTATGAGTTTGA+TGG + chr8_4:48424174-48424193 Msa1329700:intron 40.0%
CTATGTTGTGAACACAAACC+AGG + chr8_4:48424510-48424529 Msa1329700:CDS 40.0%
!!! GAGTATCGACAGTTTTTTGC+TGG + chr8_4:48424669-48424688 Msa1329700:CDS 40.0%
ATAAAAGGCAGAGAACAACC+TGG + chr8_4:48422665-48422684 Msa1329700:CDS 40.0%
! ACTTGGTGAACTAACCATTC+TGG - chr8_4:48422707-48422726 None:intergenic 40.0%
!!! GCATTTATGTTGACGGGTTT+TGG + chr8_4:48422883-48422902 Msa1329700:intron 40.0%
CGAACTTGTGATATAGTGTC+GGG + chr8_4:48423120-48423139 Msa1329700:intron 40.0%
! GAAGATGAAGTTGCTGATTG+TGG + chr8_4:48423380-48423399 Msa1329700:intron 40.0%
! ATGAAGTTGCTGATTGTGGT+TGG + chr8_4:48423384-48423403 Msa1329700:intron 40.0%
AAATCTACACACACGTGACA+TGG - chr8_4:48423498-48423517 None:intergenic 40.0%
TGAACCTACCCAGAAAAAGT+AGG + chr8_4:48423687-48423706 Msa1329700:intron 40.0%
TAGAGAGTGGTTATGCAAAG+GGG + chr8_4:48423800-48423819 Msa1329700:intron 40.0%
AGCACTAAAAGAATGGATGC+AGG + chr8_4:48423841-48423860 Msa1329700:intron 40.0%
! AAGAAAGGGTGCATCAAGAA+AGG + chr8_4:48424017-48424036 Msa1329700:intron 40.0%
! AGAAAGGGTGCATCAAGAAA+GGG + chr8_4:48424018-48424037 Msa1329700:intron 40.0%
GCTCATCAGTATGAGTTTGA+TGG + chr8_4:48424174-48424193 Msa1329700:intron 40.0%
CTATGTTGTGAACACAAACC+AGG + chr8_4:48424510-48424529 Msa1329700:CDS 40.0%
!!! GAGTATCGACAGTTTTTTGC+TGG + chr8_4:48424669-48424688 Msa1329700:CDS 40.0%
ATTCTGGCGAACAGTTAGCA+TGG - chr8_4:48422691-48422710 None:intergenic 45.0%
ATGCTAACTGTTCGCCAGAA+TGG + chr8_4:48422690-48422709 Msa1329700:CDS 45.0%
GCACTAGAGAGATATGATGC+AGG + chr8_4:48422773-48422792 Msa1329700:intron 45.0%
CTAGAGAGATATGATGCAGG+TGG + chr8_4:48422776-48422795 Msa1329700:intron 45.0%
TCAACAAGTATGTCGGACTC+CGG + chr8_4:48422815-48422834 Msa1329700:intron 45.0%
!! GATCATCTGTGATGGGGTTT+TGG + chr8_4:48423002-48423021 Msa1329700:intron 45.0%
AATGCAGCACAAGCAAGTGA+AGG + chr8_4:48424399-48424418 Msa1329700:CDS 45.0%
ATGCAGCACAAGCAAGTGAA+GGG + chr8_4:48424400-48424419 Msa1329700:CDS 45.0%
AAGGGCAGAGAATGCAACTT+TGG + chr8_4:48424584-48424603 Msa1329700:CDS 45.0%
AGGGCAGAGAATGCAACTTT+GGG + chr8_4:48424585-48424604 Msa1329700:CDS 45.0%
ATTCTGGCGAACAGTTAGCA+TGG - chr8_4:48422691-48422710 None:intergenic 45.0%
ATGCTAACTGTTCGCCAGAA+TGG + chr8_4:48422690-48422709 Msa1329700:CDS 45.0%
GCACTAGAGAGATATGATGC+AGG + chr8_4:48422773-48422792 Msa1329700:intron 45.0%
CTAGAGAGATATGATGCAGG+TGG + chr8_4:48422776-48422795 Msa1329700:intron 45.0%
TCAACAAGTATGTCGGACTC+CGG + chr8_4:48422815-48422834 Msa1329700:intron 45.0%
!! GATCATCTGTGATGGGGTTT+TGG + chr8_4:48423002-48423021 Msa1329700:intron 45.0%
AATGCAGCACAAGCAAGTGA+AGG + chr8_4:48424399-48424418 Msa1329700:CDS 45.0%
ATGCAGCACAAGCAAGTGAA+GGG + chr8_4:48424400-48424419 Msa1329700:CDS 45.0%
AAGGGCAGAGAATGCAACTT+TGG + chr8_4:48424584-48424603 Msa1329700:CDS 45.0%
AGGGCAGAGAATGCAACTTT+GGG + chr8_4:48424585-48424604 Msa1329700:CDS 45.0%
!!! TTTTTTTTAATTATACTTAT+TGG + chr8_4:48423043-48423062 Msa1329700:intron 5.0%
!!! TCATTTTAATAATTTTTAAT+AGG + chr8_4:48423469-48423488 Msa1329700:intron 5.0%
!!! TTTTTTTTAATTATACTTAT+TGG + chr8_4:48423043-48423062 Msa1329700:intron 5.0%
!!! TCATTTTAATAATTTTTAAT+AGG + chr8_4:48423469-48423488 Msa1329700:intron 5.0%
AAATGCAGCCAATCCACTGC+CGG - chr8_4:48422837-48422856 None:intergenic 50.0%
AAATCCCCATCATCGCGCAT+AGG - chr8_4:48423894-48423913 None:intergenic 50.0%
GCACCCTTTCTTCCCTGATA+TGG - chr8_4:48424009-48424028 None:intergenic 50.0%
GCAGAGAATGCAACTTTGGG+AGG + chr8_4:48424588-48424607 Msa1329700:CDS 50.0%
AAATGCAGCCAATCCACTGC+CGG - chr8_4:48422837-48422856 None:intergenic 50.0%
AAATCCCCATCATCGCGCAT+AGG - chr8_4:48423894-48423913 None:intergenic 50.0%
GCACCCTTTCTTCCCTGATA+TGG - chr8_4:48424009-48424028 None:intergenic 50.0%
GCAGAGAATGCAACTTTGGG+AGG + chr8_4:48424588-48424607 Msa1329700:CDS 50.0%
GATGGCCTATGCGCGATGAT+GGG + chr8_4:48423886-48423905 Msa1329700:CDS 55.0%
ATGGCCTATGCGCGATGATG+GGG + chr8_4:48423887-48423906 Msa1329700:CDS 55.0%
GATGGCCTATGCGCGATGAT+GGG + chr8_4:48423886-48423905 Msa1329700:CDS 55.0%
ATGGCCTATGCGCGATGATG+GGG + chr8_4:48423887-48423906 Msa1329700:CDS 55.0%
GGCGAACAGTTAGCATGGCC+AGG - chr8_4:48422686-48422705 None:intergenic 60.0%
AGTATGTCGGACTCCGGCAG+TGG + chr8_4:48422821-48422840 Msa1329700:intron 60.0%
CTCCACCATGACACGATGCG+CGG - chr8_4:48423146-48423165 None:intergenic 60.0%
GGATGGCCTATGCGCGATGA+TGG + chr8_4:48423885-48423904 Msa1329700:CDS 60.0%
GGCGAACAGTTAGCATGGCC+AGG - chr8_4:48422686-48422705 None:intergenic 60.0%
AGTATGTCGGACTCCGGCAG+TGG + chr8_4:48422821-48422840 Msa1329700:intron 60.0%
CTCCACCATGACACGATGCG+CGG - chr8_4:48423146-48423165 None:intergenic 60.0%
GGATGGCCTATGCGCGATGA+TGG + chr8_4:48423885-48423904 Msa1329700:CDS 60.0%
GTCGGACTCCGGCAGTGGAT+TGG + chr8_4:48422826-48422845 Msa1329700:intron 65.0%
GTCGGACTCCGGCAGTGGAT+TGG + chr8_4:48422826-48422845 Msa1329700:intron 65.0%
TCGGGCCGCGCATCGTGTCA+TGG + chr8_4:48423138-48423157 Msa1329700:intron 70.0%
GGCCGCGCATCGTGTCATGG+TGG + chr8_4:48423141-48423160 Msa1329700:intron 70.0%
TCGGGCCGCGCATCGTGTCA+TGG + chr8_4:48423138-48423157 Msa1329700:intron 70.0%
GGCCGCGCATCGTGTCATGG+TGG + chr8_4:48423141-48423160 Msa1329700:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 48422662 48424740 48422662 ID=Msa1329700;Name=Msa1329700
chr8_4 mRNA 48422662 48424740 48422662 ID=Msa1329700-mRNA-1;Parent=Msa1329700;Name=Msa1329700-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.66|0.5|0.66|3|0|175
chr8_4 exon 48422662 48422711 48422662 ID=Msa1329700-mRNA-1:exon:13924;Parent=Msa1329700-mRNA-1
chr8_4 exon 48423863 48423941 48423863 ID=Msa1329700-mRNA-1:exon:13925;Parent=Msa1329700-mRNA-1
chr8_4 exon 48424342 48424740 48424342 ID=Msa1329700-mRNA-1:exon:13926;Parent=Msa1329700-mRNA-1
chr8_4 CDS 48422662 48422711 48422662 ID=Msa1329700-mRNA-1:cds;Parent=Msa1329700-mRNA-1
chr8_4 CDS 48423863 48423941 48423863 ID=Msa1329700-mRNA-1:cds;Parent=Msa1329700-mRNA-1
chr8_4 CDS 48424342 48424740 48424342 ID=Msa1329700-mRNA-1:cds;Parent=Msa1329700-mRNA-1
Gene Sequence

>Msa1329700

TCTATAAAAGGCAGAGAACAACCTGGCCATGCTAACTGTTCGCCAGAATGGTCACTTGATTGCTTTTCTCTTGGATGGCCTATGCGCGATGATGGGGATTTTTTTAAATCCAAAAGTGATTTAACGCAGTTGGACAAAACATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCAAGTGAAGGGTTAATTATTCCAAAAGACAGTCATGAGATAAGATTTGAATCACAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCACTATGTTGTGAACACAAACCAGGTTTGTTGTCTGATATAAGAAAAGCACTTAATGCACTTCATCTTATGATAATAAGGGCAGAGAATGCAACTTTGGGAGGTAGAATGAAGAATATCTTTGTCATAATTAGCTGCAAAGTACAGAATTTTGAAGATGCTGAGTATCGACAGTTTTTTGCTGGATCTATTCATCAAGCTCTTAGATCTGTACATGATAGATTTTCTAATTAA

Protein sequence

>Msa1329700

SIKGREQPGHANCSPEWSLDCFSLGWPMRDDGDFFKSKSDLTQLDKTSLLAEVITHLKELKTNAAQASEGLIIPKDSHEIRFESQEGGLNGFPYSIRASLCCEHKPGLLSDIRKALNALHLMIIRAENATLGGRMKNIFVIISCKVQNFEDAEYRQFFAGSIHQALRSVHDRFSN*