AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639030 MtrunA17_Chr4g0050421 92.391 368 4 2 1 367 1 345 0.0 694
Msa0639030 MtrunA17_Chr5g0430001 62.125 367 95 4 1 367 1 323 2.03e-161 455
Msa0639030 MtrunA17_Chr5g0430011 65.982 341 76 5 29 367 22 324 1.34e-153 435
Msa0639030 MtrunA17_Chr5g0409121 63.245 302 86 2 68 367 52 330 4.47e-144 411
Msa0639030 MtrunA17_Chr2g0289361 26.667 180 111 3 158 317 109 287 8.51e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639030 AT5G64210.1 65.982 341 74 6 30 367 52 353 6.04e-159 450
Msa0639030 AT3G22370.1 64.078 309 79 2 68 367 69 354 9.50e-149 424
Msa0639030 AT3G22360.1 62.500 304 91 1 64 367 45 325 4.82e-143 409
Msa0639030 AT3G27620.1 64.685 286 78 1 82 367 67 329 1.72e-140 402
Msa0639030 AT1G32350.1 62.630 289 85 1 79 367 53 318 2.21e-138 396
Msa0639030 AT1G32350.2 68.016 247 79 0 79 325 53 299 7.30e-132 380
Msa0639030 AT4G22260.1 30.000 180 105 3 158 317 121 299 1.86e-15 77.0

Find 124 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGCAGTACACCTTATTT+TGG 0.115904 4_3:+34675405 Msa0639030:intron
TGTTATGACATCTTTCAATT+TGG 0.225219 4_3:-34674157 None:intergenic
ACGTGGTTGTGTCGAGTTAT+TGG 0.242663 4_3:+34672902 Msa0639030:CDS
TGATAAGTTTCCAAGAAAAT+TGG 0.249578 4_3:-34672582 None:intergenic
TTCTGGATAAAGTCGCTTAC+AGG 0.257073 4_3:+34673165 Msa0639030:CDS
AGCTCCTCTTGGTTATCATT+AGG 0.258014 4_3:+34675852 Msa0639030:CDS
ATCTTTCAATTTGGCATCCT+TGG 0.265673 4_3:-34674148 None:intergenic
CGTGGTTGTGTCGAGTTATT+GGG 0.294734 4_3:+34672903 Msa0639030:CDS
AACTTTGACGGTTAGAATTC+CGG 0.295362 4_3:-34672681 None:intergenic
GATAAGATCTGGAACATAAC+TGG 0.298266 4_3:+34676159 Msa0639030:three_prime_UTR
GCTCCTCTTGGTTATCATTA+GGG 0.299342 4_3:+34675853 Msa0639030:CDS
ATTCTGTATGATCAAAATAT+TGG 0.347173 4_3:-34675973 None:intergenic
GAGATCCAATACCCAAAATA+AGG 0.351829 4_3:-34675417 None:intergenic
GAAATGGTATGAGAGATTTC+TGG 0.357389 4_3:+34673930 Msa0639030:CDS
TTTGGGTATTGGATCTCGTT+TGG 0.358079 4_3:+34675423 Msa0639030:CDS
TTATGCTTTGATCATATGTT+TGG 0.364593 4_3:+34675998 Msa0639030:three_prime_UTR
AGAAATCTCTCATACCATTT+CGG 0.371303 4_3:-34673928 None:intergenic
CAAGTTCTACCATAGTCATT+AGG 0.381374 4_3:-34673900 None:intergenic
GAGAAGAAGGAGGAGAGTTC+CGG 0.382377 4_3:+34672868 Msa0639030:CDS
CAACTCTATGAGCCACCTTT+GGG 0.383053 4_3:-34674008 None:intergenic
ACAACTCTATGAGCCACCTT+TGG 0.383957 4_3:-34674009 None:intergenic
ATCAAAATATTGGTGCTTAT+AGG 0.384018 4_3:-34675963 None:intergenic
AGCATCCCTCCAACCATTCC+AGG 0.387944 4_3:-34673790 None:intergenic
CTGCCATTGCAATAGACTAT+TGG 0.388788 4_3:+34674118 Msa0639030:CDS
AGGATGGAACAGAGTGGCCT+TGG 0.398321 4_3:+34672953 Msa0639030:CDS
CTCTACGCCGATGGCGGAAA+CGG 0.400110 4_3:+34672751 Msa0639030:CDS
AATGTATAGCTTCTTCTTCA+AGG 0.401405 4_3:-34674038 None:intergenic
ATTTCTGGTTCTTGCTGTAC+AGG 0.408480 4_3:+34673945 Msa0639030:CDS
TCACAACCGCCGAACTTTGA+CGG 0.414769 4_3:-34672693 None:intergenic
ACTGTTCTCTTGATAAGATC+TGG 0.421302 4_3:+34676148 Msa0639030:three_prime_UTR
TTCCTACACTGAGTATTTGA+AGG 0.429843 4_3:+34674059 Msa0639030:CDS
TCATTCGCGGCGGCGGAAAT+CGG 0.438546 4_3:+34672718 Msa0639030:CDS
GAAACAGTTGCAGCTGTCCC+TGG 0.444443 4_3:+34673772 Msa0639030:CDS
AACCACGTTATTCTTTGTTC+CGG 0.444667 4_3:-34672887 None:intergenic
TCTTTCAATTTGGCATCCTT+GGG 0.445531 4_3:-34674147 None:intergenic
CGCTGATGAGGCTCACCATC+GGG 0.449836 4_3:+34674188 Msa0639030:CDS
CCATCCTCTCTCATAATCTT+CGG 0.453617 4_3:-34672937 None:intergenic
AAGGTGGCTCATAGAGTTGT+TGG 0.454036 4_3:+34674012 Msa0639030:CDS
ATGATGCTTATTCAGATCAA+TGG 0.454262 4_3:-34673129 None:intergenic
GCCTCCGTCTCTTCCGCTGA+TGG 0.455263 4_3:-34672826 None:intergenic
GTGGCCTTGGAACTGCTTCA+TGG 0.462385 4_3:+34672966 Msa0639030:CDS
GAGGATGCACCTAATGACTA+TGG 0.466754 4_3:+34673891 Msa0639030:CDS
GAACCCTCCGTTTCCGCCAT+CGG 0.466915 4_3:-34672758 None:intergenic
GAATTCTAACCGTCAAAGTT+CGG 0.475373 4_3:+34672684 Msa0639030:CDS
ATTTCAGCATAGTGGTGGTT+GGG 0.477652 4_3:+34673837 Msa0639030:CDS
TTTCAAAATTAATGAACTGT+GGG 0.483872 4_3:-34676202 None:intergenic
GCAGTTCTTTACCGTGGAAG+TGG 0.484800 4_3:-34675819 None:intergenic
TAGAACTTGTGAAGCCGAAA+TGG 0.485630 4_3:+34673914 Msa0639030:CDS
GCATTCAGCATTGTGTTACA+TGG 0.485894 4_3:+34672636 Msa0639030:CDS
TGTGAGGTCATTCGCGGCGG+CGG 0.486795 4_3:+34672711 Msa0639030:CDS
CCATTGCAATAGACTATTGG+AGG 0.495126 4_3:+34674121 Msa0639030:CDS
ACTTTATCCAGAAAATTCTT+CGG 0.501906 4_3:-34673155 None:intergenic
AATTTCAGCATAGTGGTGGT+TGG 0.511730 4_3:+34673836 Msa0639030:CDS
GCTGTCCCTGGAATGGTTGG+AGG 0.515427 4_3:+34673784 Msa0639030:CDS
TCTATTGCAATGGCAGGAGC+AGG 0.517572 4_3:-34674111 None:intergenic
CGGGACGCACCAGCTCCTCT+TGG 0.517676 4_3:+34675841 Msa0639030:CDS
CAATAGTCTATTGCAATGGC+AGG 0.522929 4_3:-34674117 None:intergenic
GCCGAGCTTTGATCGGTGGC+CGG 0.523135 4_3:+34672662 Msa0639030:CDS
GGGTATTGGATCTCGTTTGG+AGG 0.524118 4_3:+34675426 Msa0639030:CDS
TTTCTGGTTCTTGCTGTACA+GGG 0.524259 4_3:+34673946 Msa0639030:CDS
GGCGGTTGTGAGGTCATTCG+CGG 0.528832 4_3:+34672705 Msa0639030:CDS
GACGGAGAAGAACGAGAAGA+AGG 0.529053 4_3:+34672855 Msa0639030:CDS
TAATGATAACCAAGAGGAGC+TGG 0.534076 4_3:-34675850 None:intergenic
GCATCCCTTAAAATAGAAAG+AGG 0.534522 4_3:+34675931 Msa0639030:three_prime_UTR
CCGAAGATTATGAGAGAGGA+TGG 0.536815 4_3:+34672937 Msa0639030:CDS
CTGGAACATAACTGGGTGAA+GGG 0.542432 4_3:+34676167 Msa0639030:three_prime_UTR
AGGTGGCTCATAGAGTTGTT+GGG 0.545630 4_3:+34674013 Msa0639030:CDS
TCCGGCCACCGATCAAAGCT+CGG 0.550176 4_3:-34672663 None:intergenic
ACGCCGATGGCGGAAACGGA+GGG 0.558279 4_3:+34672755 Msa0639030:CDS
ATGGCTCGCCGAGCTTTGAT+CGG 0.558446 4_3:+34672655 Msa0639030:CDS
AACAGTCATTCGCGCTGATG+AGG 0.563488 4_3:+34674176 Msa0639030:CDS
TACGCCGATGGCGGAAACGG+AGG 0.565606 4_3:+34672754 Msa0639030:CDS
CTTCCACGGTAAAGAACTGC+GGG 0.566723 4_3:+34675822 Msa0639030:CDS
GGTTTCGTAATGCAAACTAA+AGG 0.570417 4_3:-34675903 None:intergenic
GTGGTTGTGTCGAGTTATTG+GGG 0.571030 4_3:+34672904 Msa0639030:CDS
GCAGCTGTCCCTGGAATGGT+TGG 0.572427 4_3:+34673781 Msa0639030:CDS
CAGAGGCATCTCTACGCCGA+TGG 0.573886 4_3:+34672742 Msa0639030:CDS
TTGAAGAAGCAGAGAATGAG+AGG 0.575067 4_3:+34673872 Msa0639030:CDS
ATAAGATCTGGAACATAACT+GGG 0.582846 4_3:+34676160 Msa0639030:three_prime_UTR
TCTTCCGCTGATGGCTTCGA+CGG 0.586594 4_3:-34672817 None:intergenic
GCCATCAGCGGAAGAGACGG+AGG 0.587726 4_3:+34672825 Msa0639030:CDS
TATTTGAAGGACATTGATAG+TGG 0.587742 4_3:+34674072 Msa0639030:CDS
TTTGATTGATAAGTCTCCCA+TGG 0.588432 4_3:-34673101 None:intergenic
GAAGCCATCAGCGGAAGAGA+CGG 0.589166 4_3:+34672822 Msa0639030:CDS
GCGCTGATGAGGCTCACCAT+CGG 0.590135 4_3:+34674187 Msa0639030:CDS
CGAAAATTTCAGCATAGTGG+TGG 0.590958 4_3:+34673832 Msa0639030:CDS
CTGTTTCGAGCATCATTGCA+CGG 0.591594 4_3:-34673756 None:intergenic
GCTTCATCTTTCGAGAGCGA+AGG 0.591663 4_3:-34672615 None:intergenic
GTCAAAGTTCGGCGGTTGTG+AGG 0.592006 4_3:+34672695 Msa0639030:CDS
TTACATACTTTCCCCAAAGG+TGG 0.592089 4_3:+34673996 Msa0639030:CDS
CTGTCCCTGGAATGGTTGGA+GGG 0.593126 4_3:+34673785 Msa0639030:CDS
CTCCGAAAATTTCAGCATAG+TGG 0.594257 4_3:+34673829 Msa0639030:CDS
TCTGGAACATAACTGGGTGA+AGG 0.594436 4_3:+34676166 Msa0639030:three_prime_UTR
CGGCGGCGGAAATCGGCCAG+AGG 0.595135 4_3:+34672725 Msa0639030:CDS
AACTCTATGAGCCACCTTTG+GGG 0.595501 4_3:-34674007 None:intergenic
TTCAAAATTAATGAACTGTG+GGG 0.596562 4_3:-34676201 None:intergenic
ACTTTACATACTTTCCCCAA+AGG 0.601341 4_3:+34673993 Msa0639030:CDS
CATCGGCGTAGAGATGCCTC+TGG 0.604415 4_3:-34672741 None:intergenic
ATGCAGGATATCCACTTCCA+CGG 0.604624 4_3:+34675808 Msa0639030:intron
AGGCATCTCTACGCCGATGG+CGG 0.606114 4_3:+34672745 Msa0639030:CDS
AGAGACGGAGGCGAAATCGA+CGG 0.606512 4_3:+34672837 Msa0639030:CDS
GAGGCCGAAGATTATGAGAG+AGG 0.612635 4_3:+34672933 Msa0639030:CDS
TGCGCCGTCGAAGCCATCAG+CGG 0.613702 4_3:+34672813 Msa0639030:CDS
GGAGAAGAACGAGAAGAAGG+AGG 0.617945 4_3:+34672858 Msa0639030:CDS
TGGAACATAACTGGGTGAAG+GGG 0.619345 4_3:+34676168 Msa0639030:three_prime_UTR
GTTACCATGAAGCAGTTCCA+AGG 0.624690 4_3:-34672970 None:intergenic
GCTCGCCGAGCTTTGATCGG+TGG 0.625356 4_3:+34672658 Msa0639030:CDS
AGTTGCAGCTGTCCCTGGAA+TGG 0.626357 4_3:+34673777 Msa0639030:CDS
AGACTATTGGAGGCTTCCCA+AGG 0.628882 4_3:+34674131 Msa0639030:CDS
AATGTAACTCACATTAAACA+TGG 0.632292 4_3:-34676122 None:intergenic
GCATCCCTCCAACCATTCCA+GGG 0.636143 4_3:-34673789 None:intergenic
GAACACTCACTGAAGCGAAG+TGG 0.637444 4_3:-34674218 None:intergenic
GTCCTTCAAATACTCAGTGT+AGG 0.637701 4_3:-34674061 None:intergenic
CGTCCCGCAGTTCTTTACCG+TGG 0.639191 4_3:-34675825 None:intergenic
CCTCCAATAGTCTATTGCAA+TGG 0.640373 4_3:-34674121 None:intergenic
TTCTAACCGTCAAAGTTCGG+CGG 0.651224 4_3:+34672687 Msa0639030:CDS
TGGTTGTGTCGAGTTATTGG+GGG 0.651952 4_3:+34672905 Msa0639030:CDS
CGAAGTGGTTCACATCCCGA+TGG 0.653019 4_3:-34674203 None:intergenic
AAGCCCTAATGATAACCAAG+AGG 0.665170 4_3:-34675856 None:intergenic
AGTTACTCAAGAAGAAGCAA+CGG 0.676293 4_3:-34672553 None:intergenic
ACTTCCACGGTAAAGAACTG+CGG 0.706975 4_3:+34675821 Msa0639030:CDS
GGTTGTGAGGTCATTCGCGG+CGG 0.720769 4_3:+34672708 Msa0639030:CDS
TGAGAGAGGATGGAACAGAG+TGG 0.750950 4_3:+34672947 Msa0639030:CDS
TTCCGGAACAAAGAATAACG+TGG 0.755903 4_3:+34672885 Msa0639030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATATTATTTTATTCC+TGG + chr4_3:34673553-34673572 Msa0639030:intron 10.0%
!! TTACAAAAAAATAGTATAAA+CGG - chr4_3:34676044-34676063 None:intergenic 10.0%
!!! TAATTTAGTCAATTTTTTAC+CGG + chr4_3:34673355-34673374 Msa0639030:intron 15.0%
!! TATCATCTTACATTTATTTA+CGG + chr4_3:34674299-34674318 Msa0639030:intron 15.0%
!!! TCATAGTTGTTTTAAAATAA+AGG + chr4_3:34675658-34675677 Msa0639030:intron 15.0%
!! TTTGCTACATATGAATAAAA+GGG + chr4_3:34673448-34673467 Msa0639030:intron 20.0%
!! ATAAATGTAAGATGATATGT+TGG - chr4_3:34674296-34674315 None:intergenic 20.0%
!! ACATGAAAACTGTAAAATTT+AGG + chr4_3:34674408-34674427 Msa0639030:intron 20.0%
!!! AAAACTGTAAAATTTAGGAT+TGG + chr4_3:34674413-34674432 Msa0639030:intron 20.0%
!!! TAAAATTTAGGATTGGTATA+AGG + chr4_3:34674420-34674439 Msa0639030:intron 20.0%
!!! TTTACTTATATCCAACTTTT+AGG + chr4_3:34674671-34674690 Msa0639030:intron 20.0%
!!! TTACTTATATCCAACTTTTA+GGG + chr4_3:34674672-34674691 Msa0639030:intron 20.0%
!!! AATTATTTTAAGAGATGTTG+TGG + chr4_3:34675179-34675198 Msa0639030:intron 20.0%
!!! TTTCTTTTTCATAATAATGC+TGG + chr4_3:34675732-34675751 Msa0639030:intron 20.0%
!! GGAATTGTATTATAAAAACA+GGG - chr4_3:34675780-34675799 None:intergenic 20.0%
!!! TTATCCTCTTTCTATTTTAA+GGG - chr4_3:34675938-34675957 None:intergenic 20.0%
!!! TTTATCCTCTTTCTATTTTA+AGG - chr4_3:34675939-34675958 None:intergenic 20.0%
!! ATTCTGTATGATCAAAATAT+TGG - chr4_3:34675976-34675995 None:intergenic 20.0%
!!! TTAAACATGGTTTTCAAATT+AGG - chr4_3:34676112-34676131 None:intergenic 20.0%
!! TTTCAAAATTAATGAACTGT+GGG - chr4_3:34676205-34676224 None:intergenic 20.0%
!!! TTTTCAAAATTAATGAACTG+TGG - chr4_3:34676206-34676225 None:intergenic 20.0%
!!! CAGTTCATTAATTTTGAAAA+AGG + chr4_3:34676206-34676225 Msa0639030:three_prime_UTR 20.0%
! TGATAAGTTTCCAAGAAAAT+TGG - chr4_3:34672585-34672604 None:intergenic 25.0%
! TACAGAGAAATTCTTCAATT+CGG - chr4_3:34673002-34673021 None:intergenic 25.0%
!!! ATTGTTTTTTCGCTAATTCA+TGG + chr4_3:34673025-34673044 Msa0639030:intron 25.0%
! AATTCATGGTTTCTATAAAG+TGG + chr4_3:34673039-34673058 Msa0639030:intron 25.0%
! ACTTTATCCAGAAAATTCTT+CGG - chr4_3:34673158-34673177 None:intergenic 25.0%
!! TTTGTTATGGATCATACAAT+AGG - chr4_3:34673269-34673288 None:intergenic 25.0%
! ATTGTATGATCCATAACAAA+AGG + chr4_3:34673269-34673288 Msa0639030:intron 25.0%
! ATTGACTAAATTACATGTGT+CGG - chr4_3:34673348-34673367 None:intergenic 25.0%
!! GTTTGCTACATATGAATAAA+AGG + chr4_3:34673447-34673466 Msa0639030:intron 25.0%
! TTTATGTGCTCTTAAGAAAT+TGG + chr4_3:34673478-34673497 Msa0639030:intron 25.0%
!!! TTTTGTTATGATGTTCTTCA+TGG + chr4_3:34673668-34673687 Msa0639030:intron 25.0%
! TGTTATGACATCTTTCAATT+TGG - chr4_3:34674160-34674179 None:intergenic 25.0%
! AACTTGTGATCTCAATATAT+TGG + chr4_3:34674361-34674380 Msa0639030:intron 25.0%
! GTATAAGGTAATATACACAA+AGG + chr4_3:34674435-34674454 Msa0639030:intron 25.0%
! TAAGTAAAGCTTCATTGTTT+GGG - chr4_3:34674659-34674678 None:intergenic 25.0%
! ATAAGTAAAGCTTCATTGTT+TGG - chr4_3:34674660-34674679 None:intergenic 25.0%
!!! GTAAGAAATTTTAACCACTT+GGG + chr4_3:34674697-34674716 Msa0639030:intron 25.0%
! ATTCCAAATAACAATGCAAA+AGG + chr4_3:34674853-34674872 Msa0639030:intron 25.0%
!! TGTAGTGCTTAATTATGTTT+TGG + chr4_3:34675271-34675290 Msa0639030:intron 25.0%
! AAAAAAAATTGTAACCACCT+TGG + chr4_3:34675519-34675538 Msa0639030:intron 25.0%
!!! CTTTGATTTGTTGTTCTTTT+AGG + chr4_3:34675578-34675597 Msa0639030:intron 25.0%
! AGAACTTAGTTTAAAGAAAG+TGG + chr4_3:34675631-34675650 Msa0639030:intron 25.0%
! CGGAATTGTATTATAAAAAC+AGG - chr4_3:34675781-34675800 None:intergenic 25.0%
!! ATCAAAATATTGGTGCTTAT+AGG - chr4_3:34675966-34675985 None:intergenic 25.0%
! TTATGCTTTGATCATATGTT+TGG + chr4_3:34675998-34676017 Msa0639030:three_prime_UTR 25.0%
! AATGTAACTCACATTAAACA+TGG - chr4_3:34676125-34676144 None:intergenic 25.0%
! TTCAAAATTAATGAACTGTG+GGG - chr4_3:34676204-34676223 None:intergenic 25.0%
! AACTGTAGTTCCAATTTTCT+TGG + chr4_3:34672572-34672591 Msa0639030:five_prime_UTR 30.0%
ATGATGCTTATTCAGATCAA+TGG - chr4_3:34673132-34673151 None:intergenic 30.0%
ACCTTAAAAAACACATCAGT+GGG - chr4_3:34673212-34673231 None:intergenic 30.0%
! TCTTCTCTTTCCTTTTGTTA+TGG - chr4_3:34673282-34673301 None:intergenic 30.0%
TATCAATGATGCATATTTCC+AGG - chr4_3:34673574-34673593 None:intergenic 30.0%
CATACTATACTAGATATTGC+AGG + chr4_3:34673633-34673652 Msa0639030:intron 30.0%
! AACGTCTCTGAAAATATTCA+TGG - chr4_3:34673729-34673748 None:intergenic 30.0%
! GAATATTTTCAGAGACGTTA+TGG + chr4_3:34673730-34673749 Msa0639030:intron 30.0%
AGAAATCTCTCATACCATTT+CGG - chr4_3:34673931-34673950 None:intergenic 30.0%
AATGTATAGCTTCTTCTTCA+AGG - chr4_3:34674041-34674060 None:intergenic 30.0%
TATTTGAAGGACATTGATAG+TGG + chr4_3:34674072-34674091 Msa0639030:CDS 30.0%
TGTTGCTATACACTTTACAA+AGG + chr4_3:34674543-34674562 Msa0639030:intron 30.0%
GTTGCTATACACTTTACAAA+GGG + chr4_3:34674544-34674563 Msa0639030:intron 30.0%
! AGAAGTATATGACTACCATA+AGG + chr4_3:34674571-34674590 Msa0639030:intron 30.0%
!! GGTAAGAAATTTTAACCACT+TGG + chr4_3:34674696-34674715 Msa0639030:intron 30.0%
!! CATCCTTTTGCATTGTTATT+TGG - chr4_3:34674859-34674878 None:intergenic 30.0%
TTGTAATCTTAGGAAAGTAG+TGG + chr4_3:34675080-34675099 Msa0639030:intron 30.0%
TGTAATCTTAGGAAAGTAGT+GGG + chr4_3:34675081-34675100 Msa0639030:intron 30.0%
!! ATTTTAAGAGATGTTGTGGA+TGG + chr4_3:34675183-34675202 Msa0639030:intron 30.0%
!! TTTTAAGAGATGTTGTGGAT+GGG + chr4_3:34675184-34675203 Msa0639030:intron 30.0%
!! GAGTAGTTTCTGTTTTATTG+TGG + chr4_3:34675331-34675350 Msa0639030:intron 30.0%
ATAACATCACAATTCGATCT+TGG - chr4_3:34675364-34675383 None:intergenic 30.0%
!!! GTTATGCATTAGTTTTCGTT+TGG + chr4_3:34675379-34675398 Msa0639030:intron 30.0%
!! TATTGCAGTACACCTTATTT+TGG + chr4_3:34675405-34675424 Msa0639030:intron 30.0%
!!! ATTGCAGTACACCTTATTTT+GGG + chr4_3:34675406-34675425 Msa0639030:intron 30.0%
TTAAGTAATGTCATCTTCCA+AGG - chr4_3:34675539-34675558 None:intergenic 30.0%
AGCATAAAACATAGCAATAC+TGG - chr4_3:34675610-34675629 None:intergenic 30.0%
!! CTATTTTAAGGGATGCTTAT+AGG - chr4_3:34675927-34675946 None:intergenic 30.0%
! ACATGGTTTTCAAATTAGGT+GGG - chr4_3:34676108-34676127 None:intergenic 30.0%
! AACATGGTTTTCAAATTAGG+TGG - chr4_3:34676109-34676128 None:intergenic 30.0%
! ATAAGATCTGGAACATAACT+GGG + chr4_3:34676160-34676179 Msa0639030:three_prime_UTR 30.0%
AACTTTGACGGTTAGAATTC+CGG - chr4_3:34672684-34672703 None:intergenic 35.0%
GAATTCTAACCGTCAAAGTT+CGG + chr4_3:34672684-34672703 Msa0639030:CDS 35.0%
AACCACGTTATTCTTTGTTC+CGG - chr4_3:34672890-34672909 None:intergenic 35.0%
TTTGATTGATAAGTCTCCCA+TGG - chr4_3:34673104-34673123 None:intergenic 35.0%
!!! TCCCACTGATGTGTTTTTTA+AGG + chr4_3:34673208-34673227 Msa0639030:CDS 35.0%
CACCTTAAAAAACACATCAG+TGG - chr4_3:34673213-34673232 None:intergenic 35.0%
!!! GATGTGTTTTTTAAGGTGTG+TGG + chr4_3:34673215-34673234 Msa0639030:intron 35.0%
! AAATTACATGTGTCGGTGTA+AGG - chr4_3:34673341-34673360 None:intergenic 35.0%
! CACCACTATGCTGAAATTTT+CGG - chr4_3:34673834-34673853 None:intergenic 35.0%
CAAGTTCTACCATAGTCATT+AGG - chr4_3:34673903-34673922 None:intergenic 35.0%
GAAATGGTATGAGAGATTTC+TGG + chr4_3:34673930-34673949 Msa0639030:CDS 35.0%
ACTTTACATACTTTCCCCAA+AGG + chr4_3:34673993-34674012 Msa0639030:CDS 35.0%
TTCCTACACTGAGTATTTGA+AGG + chr4_3:34674059-34674078 Msa0639030:CDS 35.0%
TCTTTCAATTTGGCATCCTT+GGG - chr4_3:34674150-34674169 None:intergenic 35.0%
ATCTTTCAATTTGGCATCCT+TGG - chr4_3:34674151-34674170 None:intergenic 35.0%
ATTGAGATCACAAGTTCAAC+AGG - chr4_3:34674357-34674376 None:intergenic 35.0%
AATTAGGGGAAAATGTGATC+TGG - chr4_3:34674479-34674498 None:intergenic 35.0%
AAGTGCATGAGAGGAAATTA+GGG - chr4_3:34674494-34674513 None:intergenic 35.0%
ACACTACACTTTCGAATTCT+AGG - chr4_3:34674517-34674536 None:intergenic 35.0%
! AGAATTCGAAAGTGTAGTGT+AGG + chr4_3:34674517-34674536 Msa0639030:intron 35.0%
GACAACAAATGTATGCCTTA+TGG - chr4_3:34674589-34674608 None:intergenic 35.0%
!! CTTATATCCAACTTTTAGGG+AGG + chr4_3:34674675-34674694 Msa0639030:intron 35.0%
TTTCTTACCTCCCTAAAAGT+TGG - chr4_3:34674685-34674704 None:intergenic 35.0%
!! AGAAATTTTAACCACTTGGG+AGG + chr4_3:34674700-34674719 Msa0639030:intron 35.0%
!! AAGGGAGTGATATGTCATTT+TGG + chr4_3:34674777-34674796 Msa0639030:intron 35.0%
AATGCAAAAGGATGCTAATG+TGG + chr4_3:34674865-34674884 Msa0639030:intron 35.0%
ATGCAAAAGGATGCTAATGT+GGG + chr4_3:34674866-34674885 Msa0639030:intron 35.0%
GTAATCTTAGGAAAGTAGTG+GGG + chr4_3:34675082-34675101 Msa0639030:intron 35.0%
TAATCTTAGGAAAGTAGTGG+GGG + chr4_3:34675083-34675102 Msa0639030:intron 35.0%
ATCTTCTTAGAATCTGGGTT+TGG - chr4_3:34675145-34675164 None:intergenic 35.0%
ACTGCATCTTCTTAGAATCT+GGG - chr4_3:34675150-34675169 None:intergenic 35.0%
TTTAAGAGATGTTGTGGATG+GGG + chr4_3:34675185-34675204 Msa0639030:intron 35.0%
CACTGATATAGGCATCAAAT+TGG - chr4_3:34675297-34675316 None:intergenic 35.0%
CAATTTGATGCCTATATCAG+TGG + chr4_3:34675295-34675314 Msa0639030:intron 35.0%
!!! GTACACCTTATTTTGGGTAT+TGG + chr4_3:34675412-34675431 Msa0639030:intron 35.0%
GAGATCCAATACCCAAAATA+AGG - chr4_3:34675420-34675439 None:intergenic 35.0%
GATAACGAACATGCTAAATC+AGG - chr4_3:34675687-34675706 None:intergenic 35.0%
TTCATAATAATGCTGGCCAT+TGG + chr4_3:34675739-34675758 Msa0639030:intron 35.0%
GGTTTCGTAATGCAAACTAA+AGG - chr4_3:34675906-34675925 None:intergenic 35.0%
GCATCCCTTAAAATAGAAAG+AGG + chr4_3:34675931-34675950 Msa0639030:three_prime_UTR 35.0%
ACTGTTCTCTTGATAAGATC+TGG + chr4_3:34676148-34676167 Msa0639030:three_prime_UTR 35.0%
! GATAAGATCTGGAACATAAC+TGG + chr4_3:34676159-34676178 Msa0639030:three_prime_UTR 35.0%
GCATTCAGCATTGTGTTACA+TGG + chr4_3:34672636-34672655 Msa0639030:CDS 40.0%
TTCCGGAACAAAGAATAACG+TGG + chr4_3:34672885-34672904 Msa0639030:CDS 40.0%
CCATCCTCTCTCATAATCTT+CGG - chr4_3:34672940-34672959 None:intergenic 40.0%
! TTCGTTGTTGATTGTAGCCA+TGG + chr4_3:34673084-34673103 Msa0639030:intron 40.0%
! TCGTTGTTGATTGTAGCCAT+GGG + chr4_3:34673085-34673104 Msa0639030:intron 40.0%
! TCATGTGCCGAAGAATTTTC+TGG + chr4_3:34673148-34673167 Msa0639030:CDS 40.0%
TTCTGGATAAAGTCGCTTAC+AGG + chr4_3:34673165-34673184 Msa0639030:CDS 40.0%
! GAAATTTTCGGAGTGACTTG+AGG - chr4_3:34673822-34673841 None:intergenic 40.0%
CTCCGAAAATTTCAGCATAG+TGG + chr4_3:34673829-34673848 Msa0639030:CDS 40.0%
CGAAAATTTCAGCATAGTGG+TGG + chr4_3:34673832-34673851 Msa0639030:CDS 40.0%
AATTTCAGCATAGTGGTGGT+TGG + chr4_3:34673836-34673855 Msa0639030:CDS 40.0%
ATTTCAGCATAGTGGTGGTT+GGG + chr4_3:34673837-34673856 Msa0639030:CDS 40.0%
TTGAAGAAGCAGAGAATGAG+AGG + chr4_3:34673872-34673891 Msa0639030:CDS 40.0%
TAGAACTTGTGAAGCCGAAA+TGG + chr4_3:34673914-34673933 Msa0639030:CDS 40.0%
!! ATTTCTGGTTCTTGCTGTAC+AGG + chr4_3:34673945-34673964 Msa0639030:CDS 40.0%
!! TTTCTGGTTCTTGCTGTACA+GGG + chr4_3:34673946-34673965 Msa0639030:CDS 40.0%
TTACATACTTTCCCCAAAGG+TGG + chr4_3:34673996-34674015 Msa0639030:CDS 40.0%
GTCCTTCAAATACTCAGTGT+AGG - chr4_3:34674064-34674083 None:intergenic 40.0%
CAATAGTCTATTGCAATGGC+AGG - chr4_3:34674120-34674139 None:intergenic 40.0%
CTGCCATTGCAATAGACTAT+TGG + chr4_3:34674118-34674137 Msa0639030:CDS 40.0%
CCTCCAATAGTCTATTGCAA+TGG - chr4_3:34674124-34674143 None:intergenic 40.0%
CCATTGCAATAGACTATTGG+AGG + chr4_3:34674121-34674140 Msa0639030:CDS 40.0%
AGTGCATGAGAGGAAATTAG+GGG - chr4_3:34674493-34674512 None:intergenic 40.0%
GAAGTGCATGAGAGGAAATT+AGG - chr4_3:34674495-34674514 None:intergenic 40.0%
! AATTCTAGGAAGTGCATGAG+AGG - chr4_3:34674503-34674522 None:intergenic 40.0%
GCTATACACTTTACAAAGGG+CGG + chr4_3:34674547-34674566 Msa0639030:intron 40.0%
!! ATTTTAACCACTTGGGAGGA+CGG + chr4_3:34674704-34674723 Msa0639030:intron 40.0%
!!! TGTCATTTTGGAGTGATCCA+TGG + chr4_3:34674789-34674808 Msa0639030:intron 40.0%
!!! GTCATTTTGGAGTGATCCAT+GGG + chr4_3:34674790-34674809 Msa0639030:intron 40.0%
TGCAAAAGGATGCTAATGTG+GGG + chr4_3:34674867-34674886 Msa0639030:intron 40.0%
GAGAAAGTCAATCCATTGGA+AGG + chr4_3:34674940-34674959 Msa0639030:intron 40.0%
ATCAACCGTGAGAACTTCAA+GGG + chr4_3:34674990-34675009 Msa0639030:intron 40.0%
! GCTGGTTCTCTTGTAATCTT+AGG + chr4_3:34675070-34675089 Msa0639030:intron 40.0%
TAGAATCTGGGTTTGGACTT+TGG - chr4_3:34675138-34675157 None:intergenic 40.0%
CACTGCATCTTCTTAGAATC+TGG - chr4_3:34675151-34675170 None:intergenic 40.0%
CAAGAAACAGCCACTGATAT+AGG - chr4_3:34675308-34675327 None:intergenic 40.0%
!! ATATCAGTGGCTGTTTCTTG+AGG + chr4_3:34675308-34675327 Msa0639030:intron 40.0%
!! TATCAGTGGCTGTTTCTTGA+GGG + chr4_3:34675309-34675328 Msa0639030:intron 40.0%
!! TTTGGGTATTGGATCTCGTT+TGG + chr4_3:34675423-34675442 Msa0639030:CDS 40.0%
AGTAATGTCATCTTCCAAGG+TGG - chr4_3:34675536-34675555 None:intergenic 40.0%
AACGAACATGCTAAATCAGG+TGG - chr4_3:34675684-34675703 None:intergenic 40.0%
ACAATTCCGTTCTTTCATGC+AGG + chr4_3:34675792-34675811 Msa0639030:intron 40.0%
GGATATCCTGCATGAAAGAA+CGG - chr4_3:34675801-34675820 None:intergenic 40.0%
TAATGATAACCAAGAGGAGC+TGG - chr4_3:34675853-34675872 None:intergenic 40.0%
AGCTCCTCTTGGTTATCATT+AGG + chr4_3:34675852-34675871 Msa0639030:CDS 40.0%
GCTCCTCTTGGTTATCATTA+GGG + chr4_3:34675853-34675872 Msa0639030:CDS 40.0%
AAGCCCTAATGATAACCAAG+AGG - chr4_3:34675859-34675878 None:intergenic 40.0%
AAAAAGGTAAAGATACCCCG+AGG + chr4_3:34676222-34676241 Msa0639030:three_prime_UTR 40.0%
TTCTAACCGTCAAAGTTCGG+CGG + chr4_3:34672687-34672706 Msa0639030:CDS 45.0%
! GAAACGGAGGGTTCTTTTAC+TGG + chr4_3:34672767-34672786 Msa0639030:CDS 45.0%
! GAGGGTTCTTTTACTGGAAG+AGG + chr4_3:34672773-34672792 Msa0639030:CDS 45.0%
ACGTGGTTGTGTCGAGTTAT+TGG + chr4_3:34672902-34672921 Msa0639030:CDS 45.0%
CGTGGTTGTGTCGAGTTATT+GGG + chr4_3:34672903-34672922 Msa0639030:CDS 45.0%
GTGGTTGTGTCGAGTTATTG+GGG + chr4_3:34672904-34672923 Msa0639030:CDS 45.0%
TGGTTGTGTCGAGTTATTGG+GGG + chr4_3:34672905-34672924 Msa0639030:CDS 45.0%
CCGAAGATTATGAGAGAGGA+TGG + chr4_3:34672937-34672956 Msa0639030:CDS 45.0%
GTTACCATGAAGCAGTTCCA+AGG - chr4_3:34672973-34672992 None:intergenic 45.0%
GACACGACACAACATTGACA+CGG - chr4_3:34673392-34673411 None:intergenic 45.0%
GTCGTGTCTAGTGTTCATGT+TGG + chr4_3:34673409-34673428 Msa0639030:intron 45.0%
CTGTTTCGAGCATCATTGCA+CGG - chr4_3:34673759-34673778 None:intergenic 45.0%
GAGGATGCACCTAATGACTA+TGG + chr4_3:34673891-34673910 Msa0639030:CDS 45.0%
AACTCTATGAGCCACCTTTG+GGG - chr4_3:34674010-34674029 None:intergenic 45.0%
CAACTCTATGAGCCACCTTT+GGG - chr4_3:34674011-34674030 None:intergenic 45.0%
ACAACTCTATGAGCCACCTT+TGG - chr4_3:34674012-34674031 None:intergenic 45.0%
AAGGTGGCTCATAGAGTTGT+TGG + chr4_3:34674012-34674031 Msa0639030:CDS 45.0%
AGGTGGCTCATAGAGTTGTT+GGG + chr4_3:34674013-34674032 Msa0639030:CDS 45.0%
! TTTTAACCACTTGGGAGGAC+GGG + chr4_3:34674705-34674724 Msa0639030:intron 45.0%
! CTGGTTCTCTAGTAAGTGCA+GGG + chr4_3:34674742-34674761 Msa0639030:intron 45.0%
TAGTAAGTGCAGGGAAGTAG+TGG + chr4_3:34674751-34674770 Msa0639030:intron 45.0%
AGTAAGTGCAGGGAAGTAGT+GGG + chr4_3:34674752-34674771 Msa0639030:intron 45.0%
!!! TTTTGGAGTGATCCATGGGT+AGG + chr4_3:34674794-34674813 Msa0639030:intron 45.0%
! TTTGGAGTGATCCATGGGTA+GGG + chr4_3:34674795-34674814 Msa0639030:intron 45.0%
GCAAAAGGATGCTAATGTGG+GGG + chr4_3:34674868-34674887 Msa0639030:intron 45.0%
GTGTGGAACAAGTTCAGAGA+GGG + chr4_3:34674895-34674914 Msa0639030:intron 45.0%
TGTGGAACAAGTTCAGAGAG+GGG + chr4_3:34674896-34674915 Msa0639030:intron 45.0%
GGAGGAGAAAGTCAATCCAT+TGG + chr4_3:34674936-34674955 Msa0639030:intron 45.0%
GTCAATCCATTGGAAGGAGT+TGG + chr4_3:34674946-34674965 Msa0639030:intron 45.0%
CATTCACCAACTCCTTCCAA+TGG - chr4_3:34674955-34674974 None:intergenic 45.0%
GATCAACCGTGAGAACTTCA+AGG + chr4_3:34674989-34675008 Msa0639030:intron 45.0%
TCAACCGTGAGAACTTCAAG+GGG + chr4_3:34674991-34675010 Msa0639030:intron 45.0%
AGTACCCCTTGAAGTTCTCA+CGG - chr4_3:34674998-34675017 None:intergenic 45.0%
!! AGGGGTACTCAACAGACAAA+TGG + chr4_3:34675009-34675028 Msa0639030:intron 45.0%
! GGGGTACTCAACAGACAAAT+GGG + chr4_3:34675010-34675029 Msa0639030:intron 45.0%
ACTCAACAGACAAATGGGTC+TGG + chr4_3:34675015-34675034 Msa0639030:intron 45.0%
AGGAGGAGAATTAAACGAGC+TGG + chr4_3:34675052-34675071 Msa0639030:intron 45.0%
! AGGGGACTGATACGTTGTTT+TGG + chr4_3:34675106-34675125 Msa0639030:intron 45.0%
GATGTTGTGGATGGGGTTTA+TGG + chr4_3:34675192-34675211 Msa0639030:intron 45.0%
TGTGGATGGGGTTTATGGAA+TGG + chr4_3:34675197-34675216 Msa0639030:intron 45.0%
GAACACCAGTGTGAAACCAA+TGG - chr4_3:34675758-34675777 None:intergenic 45.0%
ATGCAGGATATCCACTTCCA+CGG + chr4_3:34675808-34675827 Msa0639030:intron 45.0%
ACTTCCACGGTAAAGAACTG+CGG + chr4_3:34675821-34675840 Msa0639030:CDS 45.0%
! TCTGGAACATAACTGGGTGA+AGG + chr4_3:34676166-34676185 Msa0639030:three_prime_UTR 45.0%
CTGGAACATAACTGGGTGAA+GGG + chr4_3:34676167-34676186 Msa0639030:three_prime_UTR 45.0%
TGGAACATAACTGGGTGAAG+GGG + chr4_3:34676168-34676187 Msa0639030:three_prime_UTR 45.0%
GCTTCATCTTTCGAGAGCGA+AGG - chr4_3:34672618-34672637 None:intergenic 50.0%
TCACAACCGCCGAACTTTGA+CGG - chr4_3:34672696-34672715 None:intergenic 50.0%
GACGGAGAAGAACGAGAAGA+AGG + chr4_3:34672855-34672874 Msa0639030:CDS 50.0%
GGAGAAGAACGAGAAGAAGG+AGG + chr4_3:34672858-34672877 Msa0639030:CDS 50.0%
GAGAAGAAGGAGGAGAGTTC+CGG + chr4_3:34672868-34672887 Msa0639030:CDS 50.0%
CGAGTTATTGGGGGATTTCG+AGG + chr4_3:34672914-34672933 Msa0639030:CDS 50.0%
GAGGCCGAAGATTATGAGAG+AGG + chr4_3:34672933-34672952 Msa0639030:CDS 50.0%
TGAGAGAGGATGGAACAGAG+TGG + chr4_3:34672947-34672966 Msa0639030:CDS 50.0%
TAAGTGTTCTCTGTCGCACG+AGG + chr4_3:34673304-34673323 Msa0639030:intron 50.0%
TCTATTGCAATGGCAGGAGC+AGG - chr4_3:34674114-34674133 None:intergenic 50.0%
AGACTATTGGAGGCTTCCCA+AGG + chr4_3:34674131-34674150 Msa0639030:CDS 50.0%
! AACAGTCATTCGCGCTGATG+AGG + chr4_3:34674176-34674195 Msa0639030:CDS 50.0%
GAACACTCACTGAAGCGAAG+TGG - chr4_3:34674221-34674240 None:intergenic 50.0%
TTTAACCACTTGGGAGGACG+GGG + chr4_3:34674706-34674725 Msa0639030:intron 50.0%
! GCTGGTTCTCTAGTAAGTGC+AGG + chr4_3:34674741-34674760 Msa0639030:intron 50.0%
GTAAGTGCAGGGAAGTAGTG+GGG + chr4_3:34674753-34674772 Msa0639030:intron 50.0%
TAAGTGCAGGGAAGTAGTGG+GGG + chr4_3:34674754-34674773 Msa0639030:intron 50.0%
AAAGGATGCTAATGTGGGGG+AGG + chr4_3:34674871-34674890 Msa0639030:intron 50.0%
CGTGTGGAACAAGTTCAGAG+AGG + chr4_3:34674894-34674913 Msa0639030:intron 50.0%
ACAAGTTCAGAGAGGGGTGA+AGG + chr4_3:34674902-34674921 Msa0639030:intron 50.0%
AGAGAGGGGTGAAGGAAAGT+GGG + chr4_3:34674910-34674929 Msa0639030:intron 50.0%
GTGAAGGAAAGTGGGATTGG+AGG + chr4_3:34674918-34674937 Msa0639030:intron 50.0%
! TCTTAGGAAAGTAGTGGGGG+AGG + chr4_3:34675086-34675105 Msa0639030:intron 50.0%
! CTTAGGAAAGTAGTGGGGGA+GGG + chr4_3:34675087-34675106 Msa0639030:intron 50.0%
! TTAGGAAAGTAGTGGGGGAG+GGG + chr4_3:34675088-34675107 Msa0639030:intron 50.0%
!! GGGTATTGGATCTCGTTTGG+AGG + chr4_3:34675426-34675445 Msa0639030:CDS 50.0%
GCAGTTCTTTACCGTGGAAG+TGG - chr4_3:34675822-34675841 None:intergenic 50.0%
CTTCCACGGTAAAGAACTGC+GGG + chr4_3:34675822-34675841 Msa0639030:CDS 50.0%
! ATGGCTCGCCGAGCTTTGAT+CGG + chr4_3:34672655-34672674 Msa0639030:CDS 55.0%
GTCAAAGTTCGGCGGTTGTG+AGG + chr4_3:34672695-34672714 Msa0639030:CDS 55.0%
TCTTCCGCTGATGGCTTCGA+CGG - chr4_3:34672820-34672839 None:intergenic 55.0%
GAAGCCATCAGCGGAAGAGA+CGG + chr4_3:34672822-34672841 Msa0639030:CDS 55.0%
AGAGACGGAGGCGAAATCGA+CGG + chr4_3:34672837-34672856 Msa0639030:CDS 55.0%
AGGATGGAACAGAGTGGCCT+TGG + chr4_3:34672953-34672972 Msa0639030:CDS 55.0%
! GTGGCCTTGGAACTGCTTCA+TGG + chr4_3:34672966-34672985 Msa0639030:CDS 55.0%
TGACACGGACACGATGACAC+CGG - chr4_3:34673377-34673396 None:intergenic 55.0%
GAAACAGTTGCAGCTGTCCC+TGG + chr4_3:34673772-34673791 Msa0639030:CDS 55.0%
AGTTGCAGCTGTCCCTGGAA+TGG + chr4_3:34673777-34673796 Msa0639030:CDS 55.0%
CTGTCCCTGGAATGGTTGGA+GGG + chr4_3:34673785-34673804 Msa0639030:CDS 55.0%
GCATCCCTCCAACCATTCCA+GGG - chr4_3:34673792-34673811 None:intergenic 55.0%
AGCATCCCTCCAACCATTCC+AGG - chr4_3:34673793-34673812 None:intergenic 55.0%
CGAAGTGGTTCACATCCCGA+TGG - chr4_3:34674206-34674225 None:intergenic 55.0%
ACGGGGAGAGTCAAACAAGC+TGG + chr4_3:34674723-34674742 Msa0639030:intron 55.0%
AGTGATCCATGGGTAGGGCA+AGG + chr4_3:34674800-34674819 Msa0639030:intron 55.0%
GTGATCCATGGGTAGGGCAA+GGG + chr4_3:34674801-34674820 Msa0639030:intron 55.0%
TGATCCATGGGTAGGGCAAG+GGG + chr4_3:34674802-34674821 Msa0639030:intron 55.0%
CAGAGAGGGGTGAAGGAAAG+TGG + chr4_3:34674909-34674928 Msa0639030:intron 55.0%
GGGGTGAAGGAAAGTGGGAT+TGG + chr4_3:34674915-34674934 Msa0639030:intron 55.0%
CAGACAAATGGGTCTGGCTG+CGG + chr4_3:34675021-34675040 Msa0639030:intron 55.0%
AGACAAATGGGTCTGGCTGC+GGG + chr4_3:34675022-34675041 Msa0639030:intron 55.0%
!! GCTGGCCATTGGTTTCACAC+TGG + chr4_3:34675750-34675769 Msa0639030:intron 55.0%
TCCGGCCACCGATCAAAGCT+CGG - chr4_3:34672666-34672685 None:intergenic 60.0%
GGCGGTTGTGAGGTCATTCG+CGG + chr4_3:34672705-34672724 Msa0639030:CDS 60.0%
GGTTGTGAGGTCATTCGCGG+CGG + chr4_3:34672708-34672727 Msa0639030:CDS 60.0%
TCATTCGCGGCGGCGGAAAT+CGG + chr4_3:34672718-34672737 Msa0639030:CDS 60.0%
CATCGGCGTAGAGATGCCTC+TGG - chr4_3:34672744-34672763 None:intergenic 60.0%
!! CAGAGGCATCTCTACGCCGA+TGG + chr4_3:34672742-34672761 Msa0639030:CDS 60.0%
AGGCATCTCTACGCCGATGG+CGG + chr4_3:34672745-34672764 Msa0639030:CDS 60.0%
!! CTCTACGCCGATGGCGGAAA+CGG + chr4_3:34672751-34672770 Msa0639030:CDS 60.0%
GAACCCTCCGTTTCCGCCAT+CGG - chr4_3:34672761-34672780 None:intergenic 60.0%
TCTGTCGCACGAGGCGTGTA+TGG + chr4_3:34673313-34673332 Msa0639030:intron 60.0%
GCAGCTGTCCCTGGAATGGT+TGG + chr4_3:34673781-34673800 Msa0639030:CDS 60.0%
GCTGTCCCTGGAATGGTTGG+AGG + chr4_3:34673784-34673803 Msa0639030:CDS 60.0%
! GCGCTGATGAGGCTCACCAT+CGG + chr4_3:34674187-34674206 Msa0639030:CDS 60.0%
CGCTGATGAGGCTCACCATC+GGG + chr4_3:34674188-34674207 Msa0639030:CDS 60.0%
! TGCAGGGAAGTAGTGGGGGA+AGG + chr4_3:34674758-34674777 Msa0639030:intron 60.0%
! GCAGGGAAGTAGTGGGGGAA+GGG + chr4_3:34674759-34674778 Msa0639030:intron 60.0%
ATCTCCCCTTGCCCTACCCA+TGG - chr4_3:34674809-34674828 None:intergenic 60.0%
CGTCCCGCAGTTCTTTACCG+TGG - chr4_3:34675828-34675847 None:intergenic 60.0%
! GCTCGCCGAGCTTTGATCGG+TGG + chr4_3:34672658-34672677 Msa0639030:CDS 65.0%
! GCCGAGCTTTGATCGGTGGC+CGG + chr4_3:34672662-34672681 Msa0639030:CDS 65.0%
TGTGAGGTCATTCGCGGCGG+CGG + chr4_3:34672711-34672730 Msa0639030:CDS 65.0%
!! TACGCCGATGGCGGAAACGG+AGG + chr4_3:34672754-34672773 Msa0639030:CDS 65.0%
!! ACGCCGATGGCGGAAACGGA+GGG + chr4_3:34672755-34672774 Msa0639030:CDS 65.0%
TGCGCCGTCGAAGCCATCAG+CGG + chr4_3:34672813-34672832 Msa0639030:CDS 65.0%
GCCATCAGCGGAAGAGACGG+AGG + chr4_3:34672825-34672844 Msa0639030:CDS 65.0%
GCCTCCGTCTCTTCCGCTGA+TGG - chr4_3:34672829-34672848 None:intergenic 65.0%
ACTCTCCCCGTCCTCCCAAG+TGG - chr4_3:34674714-34674733 None:intergenic 65.0%
! GCTAATGTGGGGGAGGCGTG+TGG + chr4_3:34674878-34674897 Msa0639030:intron 65.0%
ATGGGTCTGGCTGCGGGTGA+AGG + chr4_3:34675028-34675047 Msa0639030:intron 65.0%
TGGGTCTGGCTGCGGGTGAA+GGG + chr4_3:34675029-34675048 Msa0639030:intron 65.0%
GTCTGGCTGCGGGTGAAGGG+AGG + chr4_3:34675032-34675051 Msa0639030:intron 70.0%
TGGCTGCGGGTGAAGGGAGG+AGG + chr4_3:34675035-34675054 Msa0639030:intron 70.0%
CGGGACGCACCAGCTCCTCT+TGG + chr4_3:34675841-34675860 Msa0639030:CDS 70.0%
CGGCGGCGGAAATCGGCCAG+AGG + chr4_3:34672725-34672744 Msa0639030:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 34672555 34676245 34672555 ID=Msa0639030;Name=Msa0639030
chr4_3 mRNA 34672555 34676245 34672555 ID=Msa0639030-mRNA-1;Parent=Msa0639030;Name=Msa0639030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=76|0.5|0.8|0.8|1|1|5|372|367
chr4_3 exon 34672555 34672987 34672555 ID=Msa0639030-mRNA-1:exon:8022;Parent=Msa0639030-mRNA-1
chr4_3 exon 34673101 34673229 34673101 ID=Msa0639030-mRNA-1:exon:8023;Parent=Msa0639030-mRNA-1
chr4_3 exon 34673742 34674230 34673742 ID=Msa0639030-mRNA-1:exon:8024;Parent=Msa0639030-mRNA-1
chr4_3 exon 34675413 34675481 34675413 ID=Msa0639030-mRNA-1:exon:8025;Parent=Msa0639030-mRNA-1
chr4_3 exon 34675814 34676245 34675814 ID=Msa0639030-mRNA-1:exon:8026;Parent=Msa0639030-mRNA-1
chr4_3 five_prime_UTR 34672555 34672630 34672555 ID=Msa0639030-mRNA-1:five_prime_utr;Parent=Msa0639030-mRNA-1
chr4_3 CDS 34672631 34672987 34672631 ID=Msa0639030-mRNA-1:cds;Parent=Msa0639030-mRNA-1
chr4_3 CDS 34673101 34673229 34673101 ID=Msa0639030-mRNA-1:cds;Parent=Msa0639030-mRNA-1
chr4_3 CDS 34673742 34674230 34673742 ID=Msa0639030-mRNA-1:cds;Parent=Msa0639030-mRNA-1
chr4_3 CDS 34675413 34675481 34675413 ID=Msa0639030-mRNA-1:cds;Parent=Msa0639030-mRNA-1
chr4_3 CDS 34675814 34675873 34675814 ID=Msa0639030-mRNA-1:cds;Parent=Msa0639030-mRNA-1
chr4_3 three_prime_UTR 34675874 34676245 34675874 ID=Msa0639030-mRNA-1:three_prime_utr;Parent=Msa0639030-mRNA-1
Gene Sequence

>Msa0639030

ATGAAGCATTCAGCATTGTGTTACATGGCTCGCCGAGCTTTGATCGGTGGCCGGAATTCTAACCGTCAAAGTTCGGCGGTTGTGAGGTCATTCGCGGCGGCGGAAATCGGCCAGAGGCATCTCTACGCCGATGGCGGAAACGGAGGGTTCTTTTACTGGAAGAGGATGATGTCTTCGCAAGCTGCGCCGTCGAAGCCATCAGCGGAAGAGACGGAGGCGAAATCGACGGAGAAGAACGAGAAGAAGGAGGAGAGTTCCGGAACAAAGAATAACGTGGTTGTGTCGAGTTATTGGGGGATTTCGAGGCCGAAGATTATGAGAGAGGATGGAACAGAGTGGCCTTGGAACTGCTTCATGCCATGGGAGACTTATCAATCAAACGTTTCCATTGATCTGAATAAGCATCATGTGCCGAAGAATTTTCTGGATAAAGTCGCTTACAGGACAGTGAAGCTTCTCAGAATTCCCACTGATGTGTTTTTTAAGAGACGTTATGGTTGCCGTGCAATGATGCTCGAAACAGTTGCAGCTGTCCCTGGAATGGTTGGAGGGATGCTGTTGCACCTCAAGTCACTCCGAAAATTTCAGCATAGTGGTGGTTGGGTCAAAGCATTGCTTGAAGAAGCAGAGAATGAGAGGATGCACCTAATGACTATGGTAGAACTTGTGAAGCCGAAATGGTATGAGAGATTTCTGGTTCTTGCTGTACAGGGAGTTTTCTTCAATGCATTCTTTGTACTTTACATACTTTCCCCAAAGGTGGCTCATAGAGTTGTTGGGTACCTTGAAGAAGAAGCTATACATTCCTACACTGAGTATTTGAAGGACATTGATAGTGGTGCAATTGAAAATGTTCCTGCTCCTGCCATTGCAATAGACTATTGGAGGCTTCCCAAGGATGCCAAATTGAAAGATGTCATAACAGTCATTCGCGCTGATGAGGCTCACCATCGGGATGTGAACCACTTCGCTTCATACACCTTATTTTGGGTATTGGATCTCGTTTGGAGGTTGCTTGTAAGACATTCTGCACATCTTGTGCATGATATCCACTTCCACGGTAAAGAACTGCGGGACGCACCAGCTCCTCTTGGTTATCATTAG

Protein sequence

>Msa0639030

MKHSALCYMARRALIGGRNSNRQSSAVVRSFAAAEIGQRHLYADGGNGGFFYWKRMMSSQAAPSKPSAEETEAKSTEKNEKKEESSGTKNNVVVSSYWGISRPKIMREDGTEWPWNCFMPWETYQSNVSIDLNKHHVPKNFLDKVAYRTVKLLRIPTDVFFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWVKALLEEAENERMHLMTMVELVKPKWYERFLVLAVQGVFFNAFFVLYILSPKVAHRVVGYLEEEAIHSYTEYLKDIDSGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASYTLFWVLDLVWRLLVRHSAHLVHDIHFHGKELRDAPAPLGYH*