Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764300 | sp|P50346|RLA0_SOYBN | 80.303 | 198 | 27 | 2 | 13 | 203 | 81 | 273 | 7.72e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764300 | A0A2P5D6V7 | 66.423 | 274 | 45 | 4 | 13 | 274 | 80 | 318 | 1.57e-106 | 321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0764300 | 0.800020 | 1.753129e-48 | -8.615850e-47 |
| Msa0017510 | Msa0764300 | 0.805120 | 1.556244e-49 | -8.615850e-47 |
| Msa0094130 | Msa0764300 | 0.813413 | 2.591576e-51 | -8.615850e-47 |
| Msa0606360 | Msa0764300 | 0.801980 | 6.970960e-49 | -8.615850e-47 |
| Msa0647980 | Msa0764300 | 0.811342 | 7.344204e-51 | -8.615850e-47 |
| Msa0682330 | Msa0764300 | 0.804724 | 1.882733e-49 | -8.615850e-47 |
| Msa0704600 | Msa0764300 | 0.802523 | 5.388386e-49 | -8.615850e-47 |
| Msa0764300 | Msa0880140 | 0.802750 | 4.836496e-49 | -8.615850e-47 |
| Msa0764300 | Msa0896750 | 0.802807 | 4.708456e-49 | -8.615850e-47 |
| Msa0764300 | Msa1013400 | 0.811728 | 6.054916e-51 | -8.615850e-47 |
| Msa0764300 | Msa1024100 | 0.810543 | 1.094001e-50 | -8.615850e-47 |
| Msa0764300 | Msa1082500 | 0.805691 | 1.181585e-49 | -8.615850e-47 |
| Msa0764300 | Msa1093530 | 0.802878 | 4.552255e-49 | -8.615850e-47 |
| Msa0764300 | Msa1108160 | 0.804606 | 1.993218e-49 | -8.615850e-47 |
| Msa0764300 | Msa1144390 | 0.802784 | 4.760179e-49 | -8.615850e-47 |
| Msa0764300 | Msa1147900 | 0.806978 | 6.325981e-50 | -8.615850e-47 |
| Msa0764300 | Msa1172670 | 0.815822 | 7.590586e-52 | -8.615850e-47 |
| Msa0764300 | Msa1193290 | 0.811387 | 7.182205e-51 | -8.615850e-47 |
| Msa0764300 | Msa1303250 | 0.815982 | 6.991212e-52 | -8.615850e-47 |
| Msa0764300 | Msa1328710 | 0.805673 | 1.191484e-49 | -8.615850e-47 |
| Msa0764300 | Msa1371640 | 0.801429 | 9.043338e-49 | -8.615850e-47 |
| Msa0764300 | Msa1406430 | 0.815642 | 8.324910e-52 | -8.615850e-47 |
| Msa0764300 | Msa1410470 | 0.801942 | 7.096822e-49 | -8.615850e-47 |
| Msa0764300 | Msa1430240 | 0.807786 | 4.263664e-50 | -8.615850e-47 |
| Msa0157290 | Msa0764300 | 0.805378 | 1.374129e-49 | -8.615850e-47 |
| Msa0225600 | Msa0764300 | 0.801781 | 7.657277e-49 | -8.615850e-47 |
| Msa0225750 | Msa0764300 | 0.813684 | 2.259892e-51 | -8.615850e-47 |
| Msa0390730 | Msa0764300 | 0.815026 | 1.141572e-51 | -8.615850e-47 |
| Msa0245940 | Msa0764300 | 0.812192 | 4.797836e-51 | -8.615850e-47 |
| Msa0250880 | Msa0764300 | 0.808964 | 2.391366e-50 | -8.615850e-47 |
| Msa0317280 | Msa0764300 | 0.809000 | 2.349317e-50 | -8.615850e-47 |
| Msa0333930 | Msa0764300 | 0.817126 | 3.876117e-52 | -8.615850e-47 |
| Msa0484780 | Msa0764300 | 0.817558 | 3.099337e-52 | -8.615850e-47 |
| Msa0532710 | Msa0764300 | 0.813086 | 3.058628e-51 | -8.615850e-47 |
| Msa0551890 | Msa0764300 | 0.808862 | 2.514354e-50 | -8.615850e-47 |
| Msa0557070 | Msa0764300 | 0.814106 | 1.823917e-51 | -8.615850e-47 |
| Msa0557320 | Msa0764300 | 0.810872 | 9.286843e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764300 | MtrunA17_Chr5g0436791 | 69.424 | 278 | 37 | 4 | 13 | 277 | 81 | 323 | 9.03e-107 | 312 |
| Msa0764300 | MtrunA17_Chr3g0138631 | 67.266 | 278 | 43 | 4 | 13 | 277 | 81 | 323 | 2.16e-104 | 306 |
| Msa0764300 | MtrunA17_Chr3g0115971 | 64.286 | 84 | 8 | 2 | 19 | 101 | 32 | 94 | 1.01e-20 | 86.3 |
| Msa0764300 | MtrunA17_Chr1g0168061 | 45.946 | 111 | 24 | 2 | 173 | 277 | 1 | 81 | 4.37e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764300 | AT3G09200.1 | 77.114 | 201 | 34 | 2 | 10 | 203 | 77 | 272 | 8.83e-102 | 300 |
| Msa0764300 | AT2G40010.1 | 63.603 | 272 | 55 | 4 | 13 | 275 | 81 | 317 | 9.32e-102 | 300 |
| Msa0764300 | AT3G09200.2 | 77.114 | 201 | 34 | 2 | 10 | 203 | 44 | 239 | 1.02e-101 | 298 |
| Msa0764300 | AT3G11250.1 | 77.114 | 201 | 34 | 2 | 10 | 203 | 77 | 272 | 1.57e-101 | 299 |
Find 75 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCAGACCTCTTTCTTCC+AGG | 0.263863 | 5_2:+24151915 | Msa0764300:CDS |
| CCCACATTTCCCTGTTTCAA+TGG | 0.304888 | 5_2:-24150038 | None:intergenic |
| TCTGATGAGGACGTTGGTTT+TGG | 0.319801 | 5_2:+24152591 | Msa0764300:CDS |
| CCCTTCTTGATGAGTTCAAC+AGG | 0.332758 | 5_2:-24152072 | None:intergenic |
| TCCTCATCAGATTCTTCTTC+AGG | 0.339064 | 5_2:-24152579 | None:intergenic |
| GACCTCCTTGAGGTCTCCTT+TGG | 0.367672 | 5_2:-24150072 | None:intergenic |
| AGTGCTATTTCCATTGAAAC+AGG | 0.369892 | 5_2:+24150028 | Msa0764300:CDS |
| GCAGCTACAGCAAACTTACT+TGG | 0.386082 | 5_2:-24152501 | None:intergenic |
| TCCTTAACCTTGTCAGTCTC+AGG | 0.388549 | 5_2:-24152375 | None:intergenic |
| TTGAAGGTATTGACTTGTCT+TGG | 0.392574 | 5_2:+24152402 | Msa0764300:CDS |
| AATACCGTTGTTAATCTTTG+TGG | 0.394315 | 5_2:-24152034 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 5_2:+24151843 | Msa0764300:CDS |
| TTCTTCTTCAGGCACCTCAT+TGG | 0.399287 | 5_2:-24152568 | None:intergenic |
| CCCTGAGACTGACAAGGTTA+AGG | 0.409124 | 5_2:+24152374 | Msa0764300:CDS |
| TGCTTGCCAAGCTAGGTATC+AGG | 0.410681 | 5_2:+24152124 | Msa0764300:CDS |
| AGATTTATGAGTAAGAAATA+AGG | 0.414466 | 5_2:-24152463 | None:intergenic |
| GGGTCAAGCCCTGTGTTGCC+AGG | 0.414669 | 5_2:-24151892 | None:intergenic |
| GGAGGGACAACAACATCAAT+TGG | 0.422188 | 5_2:-24151871 | None:intergenic |
| CTTGTTGCAAAGTTTGTCAT+TGG | 0.435257 | 5_2:+24152224 | Msa0764300:CDS |
| GACCACAAGTCCATATGAAA+AGG | 0.455518 | 5_2:-24152148 | None:intergenic |
| AGGTAAGTTTACCTTGTACT+TGG | 0.456613 | 5_2:-24150108 | None:intergenic |
| ATTGATGTTGTTGTCCCTCC+TGG | 0.461091 | 5_2:+24151874 | Msa0764300:CDS |
| GTTTGTCATTGGTGTCTCAA+TGG | 0.461592 | 5_2:+24152235 | Msa0764300:CDS |
| TGTTGGATAAGAGATGGAAT+AGG | 0.471594 | 5_2:-24152270 | None:intergenic |
| CAAGGTTAAGGAGTTCTTGA+AGG | 0.472356 | 5_2:+24152386 | Msa0764300:CDS |
| AAGGTAAGATCCAGAACCTC+AGG | 0.474578 | 5_2:-24152204 | None:intergenic |
| GTTGTCCCTCCTGGCAACAC+AGG | 0.477212 | 5_2:+24151883 | Msa0764300:CDS |
| ATACCGTTGTTAATCTTTGT+GGG | 0.480502 | 5_2:-24152033 | None:intergenic |
| TTCTTCAGGCACCTCATTGG+AGG | 0.486962 | 5_2:-24152565 | None:intergenic |
| GCTGCATTGCTTGCCAAGCT+AGG | 0.495145 | 5_2:+24152117 | Msa0764300:CDS |
| GGCACCTCATTGGAGGCAGC+AGG | 0.496066 | 5_2:-24152558 | None:intergenic |
| TCCATTGAAACAGGGAAATG+TGG | 0.498109 | 5_2:+24150037 | Msa0764300:CDS |
| ACACCTGGAAGAAAGAGGTC+TGG | 0.501363 | 5_2:-24151918 | None:intergenic |
| TCATAAATCTTGTATAATGC+AGG | 0.513123 | 5_2:+24152476 | Msa0764300:CDS |
| TTGTCCCTCCTGGCAACACA+GGG | 0.516892 | 5_2:+24151884 | Msa0764300:CDS |
| CCCTGTTGAACTCATCAAGA+AGG | 0.516958 | 5_2:+24152071 | Msa0764300:CDS |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 5_2:-24151847 | None:intergenic |
| CAAGCCCTGTGTTGCCAGGA+GGG | 0.529456 | 5_2:-24151888 | None:intergenic |
| GGAAGAAAGAGGTCTGGGAG+GGG | 0.529694 | 5_2:-24151912 | None:intergenic |
| GTGCAGCAGCGAGCGAGTGT+TGG | 0.531336 | 5_2:-24152287 | None:intergenic |
| TGCACCTGCTGCCTCCAATG+AGG | 0.538712 | 5_2:+24152554 | Msa0764300:CDS |
| CCATTGAAACAGGGAAATGT+GGG | 0.538974 | 5_2:+24150038 | Msa0764300:CDS |
| TGTAGCTGCTGTTGCTTCCA+CGG | 0.544234 | 5_2:+24152515 | Msa0764300:CDS |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.544740 | 5_2:+24151838 | Msa0764300:CDS |
| TGGAAGAAAGAGGTCTGGGA+GGG | 0.545188 | 5_2:-24151913 | None:intergenic |
| ACCACAAGTCCATATGAAAA+GGG | 0.552112 | 5_2:-24152147 | None:intergenic |
| AGCGAGTGTTGGATAAGAGA+TGG | 0.556445 | 5_2:-24152276 | None:intergenic |
| TCAAGCCCTGTGTTGCCAGG+AGG | 0.558382 | 5_2:-24151889 | None:intergenic |
| CACCTGGAAGAAAGAGGTCT+GGG | 0.559601 | 5_2:-24151917 | None:intergenic |
| AAAGGGCCTGATACCTAGCT+TGG | 0.565870 | 5_2:-24152130 | None:intergenic |
| CCTGTTGAACTCATCAAGAA+GGG | 0.573673 | 5_2:+24152072 | Msa0764300:CDS |
| TGAAGAGGTTGCCAAGTACA+AGG | 0.574954 | 5_2:+24150097 | Msa0764300:CDS |
| GAAGAATCTGATGAGGACGT+TGG | 0.588249 | 5_2:+24152585 | Msa0764300:CDS |
| TTCTTTCCCTGAGACTGACA+AGG | 0.593626 | 5_2:+24152368 | Msa0764300:CDS |
| CAGCTACAGCAAACTTACTT+GGG | 0.593694 | 5_2:-24152500 | None:intergenic |
| CCTCAAGGAGGTCAGTGAAG+AGG | 0.593760 | 5_2:+24150082 | Msa0764300:CDS |
| CAATGACAAACTTTGCAACA+AGG | 0.595175 | 5_2:-24152223 | None:intergenic |
| ATGACACACCTGGAAGAAAG+AGG | 0.596264 | 5_2:-24151923 | None:intergenic |
| GTCCTCTCTGTGTATGACAA+TGG | 0.596487 | 5_2:+24152168 | Msa0764300:CDS |
| CCTCTTCACTGACCTCCTTG+AGG | 0.596985 | 5_2:-24150082 | None:intergenic |
| ATCAAGAAGGGAGACAAGGT+TGG | 0.597841 | 5_2:+24152084 | Msa0764300:CDS |
| CTGGAAGAAAGAGGTCTGGG+AGG | 0.617148 | 5_2:-24151914 | None:intergenic |
| TTTCACCAAAGGAGACCTCA+AGG | 0.617367 | 5_2:+24150067 | Msa0764300:CDS |
| CCTTAACCTTGTCAGTCTCA+GGG | 0.633440 | 5_2:-24152374 | None:intergenic |
| GCCTGAAGAAGAATCTGATG+AGG | 0.633842 | 5_2:+24152578 | Msa0764300:CDS |
| AGTCTCAGGGAAAGAATACT+CGG | 0.639038 | 5_2:-24152361 | None:intergenic |
| CCTTCTTGATGAGTTCAACA+GGG | 0.648047 | 5_2:-24152071 | None:intergenic |
| GTGCTATTTCCATTGAAACA+GGG | 0.650071 | 5_2:+24150029 | Msa0764300:CDS |
| AGCAGCAGAAACATCAGCCG+TGG | 0.661568 | 5_2:-24152532 | None:intergenic |
| ACTCATCAAGAAGGGAGACA+AGG | 0.673191 | 5_2:+24152080 | Msa0764300:CDS |
| ATTCCCACAAAGATTAACAA+CGG | 0.699571 | 5_2:+24152030 | Msa0764300:CDS |
| AGGTAAGATCCAGAACCTCA+GGG | 0.706499 | 5_2:-24152203 | None:intergenic |
| AGCCATTGTCATACACAGAG+AGG | 0.730101 | 5_2:-24152170 | None:intergenic |
| CACCAAAGGAGACCTCAAGG+AGG | 0.756266 | 5_2:+24150070 | Msa0764300:CDS |
| TATGCATTCACAAACATGTG+AGG | 0.758972 | 5_2:-24152309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCTAAAATAATCAATTT+TGG | - | chr5_2:24149916-24149935 | None:intergenic | 10.0% |
| !!! | AATTGATTATTTTAGATATT+TGG | + | chr5_2:24149917-24149936 | Msa0764300:intron | 10.0% |
| !!! | TAATATTTTTTGAAACTAAT+TGG | + | chr5_2:24149946-24149965 | Msa0764300:intron | 10.0% |
| !! | ATTTAAAAACAATTGTTTAT+TGG | + | chr5_2:24150660-24150679 | Msa0764300:intron | 10.0% |
| !!! | TTTTTTTATTAACATTTTGT+CGG | + | chr5_2:24151246-24151265 | Msa0764300:intron | 10.0% |
| !! | ATAGTAAAAAAATAACATTT+CGG | - | chr5_2:24151433-24151452 | None:intergenic | 10.0% |
| !!! | ATAATATTGATTGATGAATT+GGG | + | chr5_2:24149611-24149630 | Msa0764300:intron | 15.0% |
| !!! | AAATTAGATTTTTTAGTTGT+TGG | + | chr5_2:24149722-24149741 | Msa0764300:intron | 15.0% |
| !!! | AATTAGATTTTTTAGTTGTT+GGG | + | chr5_2:24149723-24149742 | Msa0764300:intron | 15.0% |
| !!! | TTTTGTGAATAATGAATAAT+TGG | + | chr5_2:24149808-24149827 | Msa0764300:intron | 15.0% |
| !! | TTTGTGAATAATGAATAATT+GGG | + | chr5_2:24149809-24149828 | Msa0764300:intron | 15.0% |
| !!! | AAAACTTAGGTTTTTAATTT+AGG | + | chr5_2:24149855-24149874 | Msa0764300:intron | 15.0% |
| !! | TTTACATAACAATTACAAAA+AGG | - | chr5_2:24150131-24150150 | None:intergenic | 15.0% |
| !!! | TATAAAAGCAATTTGTTATA+TGG | + | chr5_2:24150261-24150280 | Msa0764300:intron | 15.0% |
| !!! | ATAAAAGCAATTTGTTATAT+GGG | + | chr5_2:24150262-24150281 | Msa0764300:intron | 15.0% |
| !! | ATATACAAGTATAAAAAGAA+GGG | - | chr5_2:24150749-24150768 | None:intergenic | 15.0% |
| !! | AATATACAAGTATAAAAAGA+AGG | - | chr5_2:24150750-24150769 | None:intergenic | 15.0% |
| !! | AAGAAATAAAATAGATTTGA+TGG | - | chr5_2:24151057-24151076 | None:intergenic | 15.0% |
| !! | TAGTAAAAAAATAACATTTC+GGG | - | chr5_2:24151432-24151451 | None:intergenic | 15.0% |
| !!! | TTTTCAATAAATTATATGGT+TGG | + | chr5_2:24151543-24151562 | Msa0764300:intron | 15.0% |
| !! | AATTTGTAGGAATAAAAATT+AGG | - | chr5_2:24151617-24151636 | None:intergenic | 15.0% |
| !!! | ATATTTAACTTTGAAACTTT+AGG | + | chr5_2:24151999-24152018 | Msa0764300:intron | 15.0% |
| !!! | CATAATATTGATTGATGAAT+TGG | + | chr5_2:24149610-24149629 | Msa0764300:intron | 20.0% |
| !!! | TGCTATAACTTTATTTCATA+CGG | + | chr5_2:24149680-24149699 | Msa0764300:intron | 20.0% |
| !!! | TTTTTATCTGAAATATGTTG+AGG | + | chr5_2:24149774-24149793 | Msa0764300:intron | 20.0% |
| !!! | TTTTTAATTTAGGTTGTATC+CGG | + | chr5_2:24149865-24149884 | Msa0764300:intron | 20.0% |
| !! | AAATTAGTAACTATTAATCC+CGG | - | chr5_2:24149887-24149906 | None:intergenic | 20.0% |
| !! | AAACTAATTGGTTATTATAC+TGG | + | chr5_2:24149958-24149977 | Msa0764300:intron | 20.0% |
| !! | TTTGCAAACTAAAATCATAA+TGG | - | chr5_2:24150208-24150227 | None:intergenic | 20.0% |
| !! | GATTCATGATTTGATTAAAT+TGG | + | chr5_2:24150232-24150251 | Msa0764300:intron | 20.0% |
| !! | TATACAAGTATAAAAAGAAG+GGG | - | chr5_2:24150748-24150767 | None:intergenic | 20.0% |
| !! | TCTAATAATGAGTTAAAGTA+AGG | + | chr5_2:24150859-24150878 | Msa0764300:intron | 20.0% |
| !! | TCATAGAAAAAGATAACATA+TGG | - | chr5_2:24151340-24151359 | None:intergenic | 20.0% |
| !! | AAAAATTAGGAGAAAAACTT+TGG | - | chr5_2:24151604-24151623 | None:intergenic | 20.0% |
| !! | ATTCAATTGAAACAATTTGT+AGG | - | chr5_2:24151630-24151649 | None:intergenic | 20.0% |
| !! | CAAAAAAAATAGAATAACCA+GGG | - | chr5_2:24151674-24151693 | None:intergenic | 20.0% |
| !! | ACAAAAAAAATAGAATAACC+AGG | - | chr5_2:24151675-24151694 | None:intergenic | 20.0% |
| !! | GGAAATATCATTAAATTACT+AGG | - | chr5_2:24151804-24151823 | None:intergenic | 20.0% |
| !! | AGATTTATGAGTAAGAAATA+AGG | - | chr5_2:24152466-24152485 | None:intergenic | 20.0% |
| !! | GCTATAACTTTATTTCATAC+GGG | + | chr5_2:24149681-24149700 | Msa0764300:intron | 25.0% |
| ! | TAATGAATAATTGGGTAGTT+CGG | + | chr5_2:24149817-24149836 | Msa0764300:intron | 25.0% |
| !!! | TTGGTGTTATTGAAAAACTT+AGG | + | chr5_2:24149842-24149861 | Msa0764300:intron | 25.0% |
| !!! | TTTTAATTTAGGTTGTATCC+GGG | + | chr5_2:24149866-24149885 | Msa0764300:intron | 25.0% |
| ! | GTTTATTGGTAGATATATGA+AGG | + | chr5_2:24150674-24150693 | Msa0764300:intron | 25.0% |
| !! | TATGTGAGATTTTTAATCCA+AGG | + | chr5_2:24150955-24150974 | Msa0764300:intron | 25.0% |
| !! | ATGTGAGATTTTTAATCCAA+GGG | + | chr5_2:24150956-24150975 | Msa0764300:intron | 25.0% |
| !!! | AATAGATTTGATGGATTGTT+TGG | - | chr5_2:24151048-24151067 | None:intergenic | 25.0% |
| !!! | ATGATTTTTGAGAAACTGTT+TGG | + | chr5_2:24151195-24151214 | Msa0764300:intron | 25.0% |
| !!! | TGATTTTTGAGAAACTGTTT+GGG | + | chr5_2:24151196-24151215 | Msa0764300:intron | 25.0% |
| ! | TTTCTTAAGTTCTTCAATAC+AGG | + | chr5_2:24151274-24151293 | Msa0764300:intron | 25.0% |
| ! | GTATATGAGTATTACTGTAA+TGG | + | chr5_2:24151958-24151977 | Msa0764300:intron | 25.0% |
| ! | TCATAAATCTTGTATAATGC+AGG | + | chr5_2:24152476-24152495 | Msa0764300:CDS | 25.0% |
| TTGGTTATTATACTGGATTG+AGG | + | chr5_2:24149965-24149984 | Msa0764300:intron | 30.0% | |
| !! | TACACTAAAAGCATTGGATA+TGG | - | chr5_2:24150172-24150191 | None:intergenic | 30.0% |
| ! | TGACATTACACTAAAAGCAT+TGG | - | chr5_2:24150178-24150197 | None:intergenic | 30.0% |
| CTAAGTTCTTCATACTCTAA+CGG | + | chr5_2:24150320-24150339 | Msa0764300:intron | 30.0% | |
| AACATGCAATTTCTACAGTT+TGG | + | chr5_2:24150357-24150376 | Msa0764300:intron | 30.0% | |
| ! | TATTCAGTGATGCTCATTTT+TGG | + | chr5_2:24150581-24150600 | Msa0764300:intron | 30.0% |
| TCACTCAAAATAGAGCATAA+CGG | - | chr5_2:24150632-24150651 | None:intergenic | 30.0% | |
| ! | GAAAAGTACAAAAATACCCT+TGG | - | chr5_2:24150975-24150994 | None:intergenic | 30.0% |
| ! | TTATGGTGTGTTTGGTTTAT+AGG | - | chr5_2:24151135-24151154 | None:intergenic | 30.0% |
| TATAAACCAAACACACCATA+AGG | + | chr5_2:24151134-24151153 | Msa0764300:intron | 30.0% | |
| ATAAACCAAACACACCATAA+GGG | + | chr5_2:24151135-24151154 | Msa0764300:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr5_2:24151161-24151180 | None:intergenic | 30.0% | |
| CAAATAAGCAGTTTACAAAC+AGG | + | chr5_2:24151406-24151425 | Msa0764300:intron | 30.0% | |
| TTGTGATTGTTTAGATTCTG+TGG | - | chr5_2:24151514-24151533 | None:intergenic | 30.0% | |
| ATATTTCCCTTTAATCCGAA+AGG | + | chr5_2:24151816-24151835 | Msa0764300:intron | 30.0% | |
| CAGTAATACTCATATACCAA+TGG | - | chr5_2:24151955-24151974 | None:intergenic | 30.0% | |
| ATTCCCACAAAGATTAACAA+CGG | + | chr5_2:24152030-24152049 | Msa0764300:CDS | 30.0% | |
| ATACCGTTGTTAATCTTTGT+GGG | - | chr5_2:24152036-24152055 | None:intergenic | 30.0% | |
| AATACCGTTGTTAATCTTTG+TGG | - | chr5_2:24152037-24152056 | None:intergenic | 30.0% | |
| !! | TGTAGAAAGTGTCATCTTCA+TGG | + | chr5_2:24149575-24149594 | Msa0764300:intron | 35.0% |
| !! | AGTGCTATTTCCATTGAAAC+AGG | + | chr5_2:24150028-24150047 | Msa0764300:CDS | 35.0% |
| !! | GTGCTATTTCCATTGAAACA+GGG | + | chr5_2:24150029-24150048 | Msa0764300:CDS | 35.0% |
| AGGTAAGTTTACCTTGTACT+TGG | - | chr5_2:24150111-24150130 | None:intergenic | 35.0% | |
| TCCATTTATGCGAAGAAAGT+GGG | + | chr5_2:24150442-24150461 | Msa0764300:intron | 35.0% | |
| ACTACAATGGTTGAAGACAA+GGG | - | chr5_2:24150504-24150523 | None:intergenic | 35.0% | |
| ! | TTTGGAATAGAGCACTACAA+TGG | - | chr5_2:24150517-24150536 | None:intergenic | 35.0% |
| !! | GTTTTGGTAGAGCAAAGTTT+TGG | - | chr5_2:24150535-24150554 | None:intergenic | 35.0% |
| !!! | ATCTCAGATCTGTGTTGTTT+TGG | - | chr5_2:24150551-24150570 | None:intergenic | 35.0% |
| AAAACAACACAGATCTGAGA+TGG | + | chr5_2:24150550-24150569 | Msa0764300:intron | 35.0% | |
| !! | GATTTGATGGATTGTTTGGT+AGG | - | chr5_2:24151044-24151063 | None:intergenic | 35.0% |
| GAGTTTGAGAAGAGAGAAAA+AGG | - | chr5_2:24151081-24151100 | None:intergenic | 35.0% | |
| TATGACTCCCATTCATATGT+TGG | + | chr5_2:24151485-24151504 | Msa0764300:intron | 35.0% | |
| TGTATCTAATGCATGAACAG+TGG | + | chr5_2:24151576-24151595 | Msa0764300:intron | 35.0% | |
| GTATCTAATGCATGAACAGT+GGG | + | chr5_2:24151577-24151596 | Msa0764300:intron | 35.0% | |
| !!! | AATTTTCGTCTTTGAAACCC+TGG | + | chr5_2:24151654-24151673 | Msa0764300:intron | 35.0% |
| ! | ACCTTATCTGACATTTTCCT+TGG | + | chr5_2:24151700-24151719 | Msa0764300:intron | 35.0% |
| ACCAAGGAAAATGTCAGATA+AGG | - | chr5_2:24151704-24151723 | None:intergenic | 35.0% | |
| ACCACAAGTCCATATGAAAA+GGG | - | chr5_2:24152150-24152169 | None:intergenic | 35.0% | |
| CAATGACAAACTTTGCAACA+AGG | - | chr5_2:24152226-24152245 | None:intergenic | 35.0% | |
| CTTGTTGCAAAGTTTGTCAT+TGG | + | chr5_2:24152224-24152243 | Msa0764300:CDS | 35.0% | |
| TGTTGGATAAGAGATGGAAT+AGG | - | chr5_2:24152273-24152292 | None:intergenic | 35.0% | |
| TATGCATTCACAAACATGTG+AGG | - | chr5_2:24152312-24152331 | None:intergenic | 35.0% | |
| !! | TTGAAGGTATTGACTTGTCT+TGG | + | chr5_2:24152402-24152421 | Msa0764300:CDS | 35.0% |
| ATAATTGGGTAGTTCGGAGT+TGG | + | chr5_2:24149823-24149842 | Msa0764300:intron | 40.0% | |
| TCCATTGAAACAGGGAAATG+TGG | + | chr5_2:24150037-24150056 | Msa0764300:CDS | 40.0% | |
| CCATTGAAACAGGGAAATGT+GGG | + | chr5_2:24150038-24150057 | Msa0764300:CDS | 40.0% | |
| !! | GTGGGTTTGATTTTCACCAA+AGG | + | chr5_2:24150056-24150075 | Msa0764300:CDS | 40.0% |
| TCATACTCTAACGGTCTGTT+AGG | + | chr5_2:24150329-24150348 | Msa0764300:intron | 40.0% | |
| !! | GTTTGGTGTAGCTGAGAAAT+TGG | + | chr5_2:24150374-24150393 | Msa0764300:intron | 40.0% |
| !! | AGAGAGAGATTGATTTTGCG+TGG | + | chr5_2:24150397-24150416 | Msa0764300:intron | 40.0% |
| !! | GAGAGAGATTGATTTTGCGT+GGG | + | chr5_2:24150398-24150417 | Msa0764300:intron | 40.0% |
| CTCCATTTATGCGAAGAAAG+TGG | + | chr5_2:24150441-24150460 | Msa0764300:intron | 40.0% | |
| CCATTTATGCGAAGAAAGTG+GGG | + | chr5_2:24150443-24150462 | Msa0764300:intron | 40.0% | |
| CACTACAATGGTTGAAGACA+AGG | - | chr5_2:24150505-24150524 | None:intergenic | 40.0% | |
| !! | TCAGTGATGCTCATTTTTGG+AGG | + | chr5_2:24150584-24150603 | Msa0764300:intron | 40.0% |
| TGCAGAATAAGCTTACGATC+AGG | - | chr5_2:24151388-24151407 | None:intergenic | 40.0% | |
| GTGGAGACCAACATATGAAT+GGG | - | chr5_2:24151495-24151514 | None:intergenic | 40.0% | |
| TGTGGAGACCAACATATGAA+TGG | - | chr5_2:24151496-24151515 | None:intergenic | 40.0% | |
| ! | AAAGAGCATGTTGACAACCA+AGG | - | chr5_2:24151720-24151739 | None:intergenic | 40.0% |
| TTCCCTTTAATCCGAAAGGT+TGG | + | chr5_2:24151820-24151839 | Msa0764300:intron | 40.0% | |
| CTCCAACCTTTCGGATTAAA+GGG | - | chr5_2:24151825-24151844 | None:intergenic | 40.0% | |
| CCTTCTTGATGAGTTCAACA+GGG | - | chr5_2:24152074-24152093 | None:intergenic | 40.0% | |
| CCTGTTGAACTCATCAAGAA+GGG | + | chr5_2:24152072-24152091 | Msa0764300:CDS | 40.0% | |
| GACCACAAGTCCATATGAAA+AGG | - | chr5_2:24152151-24152170 | None:intergenic | 40.0% | |
| ! | GTTTGTCATTGGTGTCTCAA+TGG | + | chr5_2:24152235-24152254 | Msa0764300:CDS | 40.0% |
| AGTCTCAGGGAAAGAATACT+CGG | - | chr5_2:24152364-24152383 | None:intergenic | 40.0% | |
| CAAGGTTAAGGAGTTCTTGA+AGG | + | chr5_2:24152386-24152405 | Msa0764300:CDS | 40.0% | |
| CAGCTACAGCAAACTTACTT+GGG | - | chr5_2:24152503-24152522 | None:intergenic | 40.0% | |
| TCCTCATCAGATTCTTCTTC+AGG | - | chr5_2:24152582-24152601 | None:intergenic | 40.0% | |
| !!! | GACGTTGGTTTTGGTCTTTT+TGG | + | chr5_2:24152600-24152619 | Msa0764300:CDS | 40.0% |
| CCCACATTTCCCTGTTTCAA+TGG | - | chr5_2:24150041-24150060 | None:intergenic | 45.0% | |
| TTTCACCAAAGGAGACCTCA+AGG | + | chr5_2:24150067-24150086 | Msa0764300:CDS | 45.0% | |
| TGAAGAGGTTGCCAAGTACA+AGG | + | chr5_2:24150097-24150116 | Msa0764300:CDS | 45.0% | |
| GGAGAGACCCAAATTTGAGT+GGG | - | chr5_2:24150425-24150444 | None:intergenic | 45.0% | |
| TGGAGAGACCCAAATTTGAG+TGG | - | chr5_2:24150426-24150445 | None:intergenic | 45.0% | |
| CCCCACTTTCTTCGCATAAA+TGG | - | chr5_2:24150446-24150465 | None:intergenic | 45.0% | |
| GTTGAAGACAAGGGCAAAGT+TGG | - | chr5_2:24150495-24150514 | None:intergenic | 45.0% | |
| CACTGACGAGAGATATGCAT+TGG | + | chr5_2:24150710-24150729 | Msa0764300:intron | 45.0% | |
| !! | ACGAGAGATATGCATTGGCT+GGG | + | chr5_2:24150715-24150734 | Msa0764300:intron | 45.0% |
| TCAATCCAAACAGGCCCTTA+TGG | - | chr5_2:24151152-24151171 | None:intergenic | 45.0% | |
| GCTCCAACCTTTCGGATTAA+AGG | - | chr5_2:24151826-24151845 | None:intergenic | 45.0% | |
| GGAGGGACAACAACATCAAT+TGG | - | chr5_2:24151874-24151893 | None:intergenic | 45.0% | |
| ATTGATGTTGTTGTCCCTCC+TGG | + | chr5_2:24151874-24151893 | Msa0764300:CDS | 45.0% | |
| ATGACACACCTGGAAGAAAG+AGG | - | chr5_2:24151926-24151945 | None:intergenic | 45.0% | |
| ATGGAGTAAGATGACACACC+TGG | - | chr5_2:24151936-24151955 | None:intergenic | 45.0% | |
| GGTGTGTCATCTTACTCCAT+TGG | + | chr5_2:24151936-24151955 | Msa0764300:intron | 45.0% | |
| CCCTGTTGAACTCATCAAGA+AGG | + | chr5_2:24152071-24152090 | Msa0764300:CDS | 45.0% | |
| CCCTTCTTGATGAGTTCAAC+AGG | - | chr5_2:24152075-24152094 | None:intergenic | 45.0% | |
| ACTCATCAAGAAGGGAGACA+AGG | + | chr5_2:24152080-24152099 | Msa0764300:CDS | 45.0% | |
| ATCAAGAAGGGAGACAAGGT+TGG | + | chr5_2:24152084-24152103 | Msa0764300:CDS | 45.0% | |
| ! | GGTATCAGGCCCTTTTCATA+TGG | + | chr5_2:24152138-24152157 | Msa0764300:CDS | 45.0% |
| ! | GCCCTTTTCATATGGACTTG+TGG | + | chr5_2:24152146-24152165 | Msa0764300:CDS | 45.0% |
| GTCCTCTCTGTGTATGACAA+TGG | + | chr5_2:24152168-24152187 | Msa0764300:CDS | 45.0% | |
| AGCCATTGTCATACACAGAG+AGG | - | chr5_2:24152173-24152192 | None:intergenic | 45.0% | |
| !!! | TGTTTTTAGCCCTGAGGTTC+TGG | + | chr5_2:24152194-24152213 | Msa0764300:CDS | 45.0% |
| AGGTAAGATCCAGAACCTCA+GGG | - | chr5_2:24152206-24152225 | None:intergenic | 45.0% | |
| AAGGTAAGATCCAGAACCTC+AGG | - | chr5_2:24152207-24152226 | None:intergenic | 45.0% | |
| !! | AGCGAGTGTTGGATAAGAGA+TGG | - | chr5_2:24152279-24152298 | None:intergenic | 45.0% |
| TTCTTTCCCTGAGACTGACA+AGG | + | chr5_2:24152368-24152387 | Msa0764300:CDS | 45.0% | |
| CCTTAACCTTGTCAGTCTCA+GGG | - | chr5_2:24152377-24152396 | None:intergenic | 45.0% | |
| TCCTTAACCTTGTCAGTCTC+AGG | - | chr5_2:24152378-24152397 | None:intergenic | 45.0% | |
| GCAGCTACAGCAAACTTACT+TGG | - | chr5_2:24152504-24152523 | None:intergenic | 45.0% | |
| TTCTTCTTCAGGCACCTCAT+TGG | - | chr5_2:24152571-24152590 | None:intergenic | 45.0% | |
| GCCTGAAGAAGAATCTGATG+AGG | + | chr5_2:24152578-24152597 | Msa0764300:CDS | 45.0% | |
| GAAGAATCTGATGAGGACGT+TGG | + | chr5_2:24152585-24152604 | Msa0764300:CDS | 45.0% | |
| !!! | TCTGATGAGGACGTTGGTTT+TGG | + | chr5_2:24152591-24152610 | Msa0764300:CDS | 45.0% |
| !! | TATTTCAATTATTAATTAAT+TGG | - | chr5_2:24150809-24150828 | None:intergenic | 5.0% |
| !!! | ATTATTTTCAATAAATTATA+TGG | + | chr5_2:24151539-24151558 | Msa0764300:intron | 5.0% |
| CGTGGGACCCACTCAAATTT+GGG | + | chr5_2:24150415-24150434 | Msa0764300:intron | 50.0% | |
| GAAAGTGGGGAGAGAAAGCA+TGG | + | chr5_2:24150456-24150475 | Msa0764300:intron | 50.0% | |
| ! | GACGAGAGATATGCATTGGC+TGG | + | chr5_2:24150714-24150733 | Msa0764300:intron | 50.0% |
| !! | GAGATATGCATTGGCTGGGT+CGG | + | chr5_2:24150719-24150738 | Msa0764300:intron | 50.0% |
| ACAGGCCCTTATGGTGTGTT+TGG | - | chr5_2:24151143-24151162 | None:intergenic | 50.0% | |
| ACACACCATAAGGGCCTGTT+TGG | + | chr5_2:24151144-24151163 | Msa0764300:intron | 50.0% | |
| TGGAAGAAAGAGGTCTGGGA+GGG | - | chr5_2:24151916-24151935 | None:intergenic | 50.0% | |
| CACCTGGAAGAAAGAGGTCT+GGG | - | chr5_2:24151920-24151939 | None:intergenic | 50.0% | |
| ACACCTGGAAGAAAGAGGTC+TGG | - | chr5_2:24151921-24151940 | None:intergenic | 50.0% | |
| TGCTTGCCAAGCTAGGTATC+AGG | + | chr5_2:24152124-24152143 | Msa0764300:CDS | 50.0% | |
| AAAGGGCCTGATACCTAGCT+TGG | - | chr5_2:24152133-24152152 | None:intergenic | 50.0% | |
| !!! | TGGCTCTGTTTTTAGCCCTG+AGG | + | chr5_2:24152188-24152207 | Msa0764300:CDS | 50.0% |
| CCCTGAGACTGACAAGGTTA+AGG | + | chr5_2:24152374-24152393 | Msa0764300:CDS | 50.0% | |
| ! | TGTAGCTGCTGTTGCTTCCA+CGG | + | chr5_2:24152515-24152534 | Msa0764300:CDS | 50.0% |
| TTCTTCAGGCACCTCATTGG+AGG | - | chr5_2:24152568-24152587 | None:intergenic | 50.0% | |
| CACCAAAGGAGACCTCAAGG+AGG | + | chr5_2:24150070-24150089 | Msa0764300:CDS | 55.0% | |
| GACCTCCTTGAGGTCTCCTT+TGG | - | chr5_2:24150075-24150094 | None:intergenic | 55.0% | |
| CCTCTTCACTGACCTCCTTG+AGG | - | chr5_2:24150085-24150104 | None:intergenic | 55.0% | |
| CCTCAAGGAGGTCAGTGAAG+AGG | + | chr5_2:24150082-24150101 | Msa0764300:CDS | 55.0% | |
| GCGTGGGACCCACTCAAATT+TGG | + | chr5_2:24150414-24150433 | Msa0764300:intron | 55.0% | |
| GAGCAGGAGCTCCAACCTTT+CGG | - | chr5_2:24151834-24151853 | None:intergenic | 55.0% | |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr5_2:24151843-24151862 | Msa0764300:CDS | 55.0% |
| GCAACCAAACCAACACGAGC+AGG | - | chr5_2:24151850-24151869 | None:intergenic | 55.0% | |
| TTGTCCCTCCTGGCAACACA+GGG | + | chr5_2:24151884-24151903 | Msa0764300:CDS | 55.0% | |
| GGAAGAAAGAGGTCTGGGAG+GGG | - | chr5_2:24151915-24151934 | None:intergenic | 55.0% | |
| CTGGAAGAAAGAGGTCTGGG+AGG | - | chr5_2:24151917-24151936 | None:intergenic | 55.0% | |
| CTCCCAGACCTCTTTCTTCC+AGG | + | chr5_2:24151915-24151934 | Msa0764300:CDS | 55.0% | |
| GCTGCATTGCTTGCCAAGCT+AGG | + | chr5_2:24152117-24152136 | Msa0764300:CDS | 55.0% | |
| AGCAGCAGAAACATCAGCCG+TGG | - | chr5_2:24152535-24152554 | None:intergenic | 55.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr5_2:24151838-24151857 | Msa0764300:CDS | 60.0% | |
| GTTGTCCCTCCTGGCAACAC+AGG | + | chr5_2:24151883-24151902 | Msa0764300:CDS | 60.0% | |
| CAAGCCCTGTGTTGCCAGGA+GGG | - | chr5_2:24151891-24151910 | None:intergenic | 60.0% | |
| TCAAGCCCTGTGTTGCCAGG+AGG | - | chr5_2:24151892-24151911 | None:intergenic | 60.0% | |
| TGCACCTGCTGCCTCCAATG+AGG | + | chr5_2:24152554-24152573 | Msa0764300:CDS | 60.0% | |
| GGGTCAAGCCCTGTGTTGCC+AGG | - | chr5_2:24151895-24151914 | None:intergenic | 65.0% | |
| GTGCAGCAGCGAGCGAGTGT+TGG | - | chr5_2:24152290-24152309 | None:intergenic | 65.0% | |
| GGCACCTCATTGGAGGCAGC+AGG | - | chr5_2:24152561-24152580 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 24149563 | 24152632 | 24149563 | ID=Msa0764300;Name=Msa0764300 |
| chr5_2 | mRNA | 24149563 | 24152632 | 24149563 | ID=Msa0764300-mRNA-1;Parent=Msa0764300;Name=Msa0764300-mRNA-1;_AED=0.10;_eAED=0.18;_QI=0|0.4|0.16|0.5|0.4|0.5|6|0|277 |
| chr5_2 | exon | 24149563 | 24149569 | 24149563 | ID=Msa0764300-mRNA-1:exon:9873;Parent=Msa0764300-mRNA-1 |
| chr5_2 | exon | 24149763 | 24149769 | 24149763 | ID=Msa0764300-mRNA-1:exon:9874;Parent=Msa0764300-mRNA-1 |
| chr5_2 | exon | 24149932 | 24149938 | 24149932 | ID=Msa0764300-mRNA-1:exon:9875;Parent=Msa0764300-mRNA-1 |
| chr5_2 | exon | 24150017 | 24150118 | 24150017 | ID=Msa0764300-mRNA-1:exon:9876;Parent=Msa0764300-mRNA-1 |
| chr5_2 | exon | 24151838 | 24151936 | 24151838 | ID=Msa0764300-mRNA-1:exon:9877;Parent=Msa0764300-mRNA-1 |
| chr5_2 | exon | 24152021 | 24152632 | 24152021 | ID=Msa0764300-mRNA-1:exon:9878;Parent=Msa0764300-mRNA-1 |
| chr5_2 | CDS | 24149563 | 24149569 | 24149563 | ID=Msa0764300-mRNA-1:cds;Parent=Msa0764300-mRNA-1 |
| chr5_2 | CDS | 24149763 | 24149769 | 24149763 | ID=Msa0764300-mRNA-1:cds;Parent=Msa0764300-mRNA-1 |
| chr5_2 | CDS | 24149932 | 24149938 | 24149932 | ID=Msa0764300-mRNA-1:cds;Parent=Msa0764300-mRNA-1 |
| chr5_2 | CDS | 24150017 | 24150118 | 24150017 | ID=Msa0764300-mRNA-1:cds;Parent=Msa0764300-mRNA-1 |
| chr5_2 | CDS | 24151838 | 24151936 | 24151838 | ID=Msa0764300-mRNA-1:cds;Parent=Msa0764300-mRNA-1 |
| chr5_2 | CDS | 24152021 | 24152632 | 24152021 | ID=Msa0764300-mRNA-1:cds;Parent=Msa0764300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
