AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0250880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0250880 MtrunA17_Chr1g0212331 93.162 468 4 1 1 468 301 740 0.0 885
Msa0250880 MtrunA17_Chr1g0212331 100.000 89 0 0 485 573 918 1006 1.13e-50 188
Msa0250880 MtrunA17_Chr2g0281601 56.568 472 161 8 1 468 565 996 2.91e-158 486
Msa0250880 MtrunA17_Chr2g0281601 82.955 88 15 0 486 573 1182 1269 3.14e-42 163
Msa0250880 MtrunA17_Chr2g0320751 31.306 444 198 9 13 445 398 745 7.30e-55 200
Msa0250880 MtrunA17_Chr2g0320751 46.067 89 48 0 486 574 900 988 3.54e-21 98.2
Msa0250880 MtrunA17_Chr1g0168031 30.022 453 199 9 13 465 534 868 1.39e-54 199
Msa0250880 MtrunA17_Chr1g0168031 53.933 89 41 0 485 573 1036 1124 7.86e-23 103
Msa0250880 MtrunA17_Chr7g0255821 27.074 458 200 11 13 467 250 576 1.47e-40 157
Msa0250880 MtrunA17_Chr4g0024921 27.044 477 207 13 13 426 260 658 1.03e-36 146
Msa0250880 MtrunA17_Chr4g0024921 56.818 88 38 0 486 573 816 903 9.14e-27 115
Msa0250880 MtrunA17_Chr4g0017211 24.214 541 243 15 104 573 1508 1952 2.17e-30 127
Msa0250880 MtrunA17_Chr4g0066741 26.446 363 206 10 224 570 307 624 1.10e-26 115
Msa0250880 MtrunA17_Chr2g0286291 25.000 364 214 9 222 570 308 627 4.49e-25 110
Msa0250880 MtrunA17_Chr1g0183681 24.672 381 216 8 219 574 539 873 1.63e-24 108
Msa0250880 MtrunA17_Chr4g0052341 25.668 374 200 9 225 572 877 1198 1.24e-23 106
Msa0250880 MtrunA17_Chr5g0403921 24.804 383 219 11 217 570 299 641 1.56e-23 105
Msa0250880 MtrunA17_Chr8g0384531 24.092 523 264 14 105 574 436 878 1.56e-21 99.4
Msa0250880 MtrunA17_Chr5g0428401 29.046 241 125 5 93 322 479 684 1.96e-20 96.3
Msa0250880 MtrunA17_Chr7g0257101 48.810 84 43 0 487 570 1243 1326 8.23e-17 84.7
Msa0250880 MtrunA17_Chr1g0175191 43.023 86 43 1 485 570 1117 1196 3.52e-14 76.3
Msa0250880 MtrunA17_Chr1g0163011 43.902 82 46 0 488 569 622 703 1.34e-13 73.9
Msa0250880 MtrunA17_Chr4g0040301 42.857 84 48 0 491 574 435 518 1.50e-13 73.9
Msa0250880 MtrunA17_Chr1g0190381 39.130 92 54 1 485 574 249 340 1.17e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0250880 AT1G50410.2 66.247 477 122 7 1 468 237 683 0.0 597
Msa0250880 AT1G50410.2 87.500 88 11 0 486 573 860 947 2.04e-44 169
Msa0250880 AT1G50410.1 66.247 477 122 7 1 468 237 683 0.0 597
Msa0250880 AT1G50410.1 87.500 88 11 0 486 573 860 947 2.04e-44 169
Msa0250880 AT1G50410.3 66.247 477 122 7 1 468 237 683 0.0 597
Msa0250880 AT1G50410.3 87.500 88 11 0 486 573 860 947 2.04e-44 169
Msa0250880 AT1G50410.4 66.247 477 122 7 1 468 237 683 0.0 596
Msa0250880 AT3G20010.2 61.818 495 131 11 1 468 1 464 0.0 546
Msa0250880 AT3G20010.2 88.636 88 10 0 486 573 635 722 3.00e-44 168
Msa0250880 AT3G20010.3 61.818 495 131 11 1 468 26 489 0.0 545
Msa0250880 AT3G20010.3 88.636 88 10 0 486 573 660 747 4.47e-44 168
Msa0250880 AT3G20010.4 61.818 495 131 11 1 468 292 755 0.0 545
Msa0250880 AT3G20010.6 61.818 495 131 11 1 468 292 755 0.0 545
Msa0250880 AT3G20010.1 61.818 495 131 11 1 468 292 755 0.0 545
Msa0250880 AT3G20010.1 88.636 88 10 0 486 573 926 1013 8.95e-44 168
Msa0250880 AT3G20010.5 61.818 495 131 11 1 468 292 755 0.0 545
Msa0250880 AT3G20010.5 88.636 88 10 0 486 573 926 1013 8.95e-44 168
Msa0250880 AT3G20010.7 61.818 495 131 11 1 468 292 755 0.0 545
Msa0250880 AT3G20010.7 88.636 88 10 0 486 573 926 1013 8.95e-44 168
Msa0250880 AT3G20010.8 61.818 495 131 11 1 468 292 755 0.0 545
Msa0250880 AT1G61140.2 53.361 476 162 13 1 468 574 997 1.06e-137 426
Msa0250880 AT1G61140.3 53.361 476 162 13 1 468 409 832 1.22e-137 428
Msa0250880 AT1G61140.3 82.955 88 15 0 486 573 999 1086 1.31e-42 164
Msa0250880 AT1G11100.3 51.915 470 169 8 1 468 410 824 1.59e-136 425
Msa0250880 AT1G11100.3 80.899 89 17 0 485 573 1005 1093 3.47e-41 160
Msa0250880 AT1G61140.1 53.361 476 162 13 1 468 567 990 1.02e-135 426
Msa0250880 AT1G61140.1 82.955 88 15 0 486 573 1157 1244 1.89e-42 164
Msa0250880 AT1G11100.2 51.915 470 169 8 1 468 552 966 2.40e-135 425
Msa0250880 AT1G11100.2 80.899 89 17 0 485 573 1147 1235 3.23e-41 160
Msa0250880 AT1G11100.4 51.915 470 169 8 1 468 553 967 2.77e-135 425
Msa0250880 AT1G11100.4 80.899 89 17 0 485 573 1148 1236 3.23e-41 160
Msa0250880 AT1G11100.5 48.085 470 143 8 1 468 410 780 6.99e-121 383
Msa0250880 AT1G11100.5 80.899 89 17 0 485 573 961 1049 3.40e-41 160
Msa0250880 AT1G11100.1 48.000 475 136 9 1 468 553 923 1.08e-119 382
Msa0250880 AT1G11100.1 80.899 89 17 0 485 573 1104 1192 3.70e-41 160
Msa0250880 AT3G16600.1 41.401 471 138 8 1 468 64 399 1.58e-103 326
Msa0250880 AT3G16600.1 75.000 84 21 0 490 573 493 576 3.97e-31 128
Msa0250880 AT5G22750.1 32.536 418 186 7 13 426 414 739 5.00e-56 204
Msa0250880 AT5G22750.1 48.810 84 43 0 491 574 918 1001 1.09e-20 97.1
Msa0250880 AT5G43530.1 31.643 414 176 7 13 426 682 988 6.69e-53 195
Msa0250880 AT5G43530.1 50.562 89 44 0 485 573 1160 1248 1.03e-21 100
Msa0250880 AT5G05130.1 29.710 414 185 6 13 421 280 592 4.77e-48 180
Msa0250880 AT5G05130.1 45.055 91 46 2 486 573 759 848 8.50e-18 87.8
Msa0250880 AT1G05120.1 29.976 417 184 9 101 443 192 574 8.66e-38 149
Msa0250880 AT1G05120.1 55.682 88 39 0 486 573 714 801 3.48e-25 110
Msa0250880 AT1G05120.2 29.976 417 184 9 101 443 235 617 9.19e-38 149
Msa0250880 AT1G05120.2 55.682 88 39 0 486 573 757 844 3.84e-25 110
Msa0250880 AT1G02670.4 30.541 370 151 8 96 438 172 462 3.11e-35 139
Msa0250880 AT1G02670.5 30.541 370 151 8 96 438 145 435 6.08e-35 139
Msa0250880 AT1G02670.5 53.623 69 32 0 486 554 544 612 4.24e-18 88.6
Msa0250880 AT1G02670.6 30.541 370 151 8 96 438 145 435 6.42e-35 140
Msa0250880 AT1G02670.6 52.273 88 42 0 486 573 544 631 1.29e-23 105
Msa0250880 AT1G02670.3 30.541 370 151 8 96 438 172 462 8.73e-35 140
Msa0250880 AT1G02670.3 52.273 88 42 0 486 573 571 658 1.40e-23 105
Msa0250880 AT1G02670.2 30.541 370 151 8 96 438 172 462 8.74e-35 139
Msa0250880 AT1G02670.2 53.623 69 32 0 486 554 571 639 4.62e-18 88.2
Msa0250880 AT3G54280.2 24.490 539 245 15 104 573 1540 1985 2.80e-31 130
Msa0250880 AT3G54280.1 24.490 539 245 15 104 573 1509 1954 2.87e-31 130
Msa0250880 AT1G02670.7 29.107 347 163 8 96 438 172 439 1.62e-28 120
Msa0250880 AT1G02670.7 52.273 88 42 0 486 573 548 635 1.19e-23 105
Msa0250880 AT1G02670.1 29.107 347 163 8 96 438 183 450 1.64e-28 120
Msa0250880 AT1G02670.1 52.273 88 42 0 486 573 559 646 1.38e-23 105
Msa0250880 AT5G66750.1 25.269 372 211 10 227 570 327 659 3.26e-25 110
Msa0250880 AT3G06400.2 24.658 365 216 9 221 570 305 625 3.40e-25 111
Msa0250880 AT3G06400.3 24.658 365 216 9 221 570 305 625 3.52e-25 111
Msa0250880 AT3G06400.1 24.658 365 216 9 221 570 305 625 3.58e-25 111
Msa0250880 AT5G18620.1 24.176 364 217 9 222 570 311 630 4.96e-24 107
Msa0250880 AT5G18620.2 24.176 364 217 9 222 570 311 630 5.24e-24 107
Msa0250880 AT2G40770.2 22.955 440 237 12 102 509 500 869 2.38e-23 105
Msa0250880 AT2G40770.1 22.955 440 237 12 102 509 500 869 2.38e-23 105
Msa0250880 AT2G40770.3 22.955 440 237 12 102 509 500 869 2.38e-23 105
Msa0250880 AT2G18760.4 25.648 386 206 11 219 574 531 865 5.54e-23 104
Msa0250880 AT2G18760.1 25.648 386 206 11 219 574 531 865 5.54e-23 104
Msa0250880 AT2G18760.2 25.648 386 206 11 219 574 531 865 5.54e-23 104
Msa0250880 AT2G18760.7 25.648 386 206 11 219 574 531 865 5.54e-23 104
Msa0250880 AT2G18760.5 25.648 386 206 11 219 574 531 865 5.54e-23 104
Msa0250880 AT2G18760.6 25.648 386 206 11 219 574 531 865 5.54e-23 104
Msa0250880 AT5G63950.1 24.242 528 256 17 105 574 429 870 5.84e-23 104
Msa0250880 AT2G18760.3 25.648 386 206 11 219 574 590 924 6.13e-23 104
Msa0250880 AT5G44800.1 26.203 374 204 9 222 572 818 1142 2.32e-22 102
Msa0250880 AT5G63950.2 25.750 400 207 12 227 574 492 853 3.90e-21 98.6
Msa0250880 AT3G57300.1 50.000 84 42 0 487 570 1257 1340 4.15e-17 85.9
Msa0250880 AT3G57300.4 50.000 84 42 0 487 570 1257 1340 4.15e-17 85.9
Msa0250880 AT3G57300.2 50.000 84 42 0 487 570 1290 1373 4.75e-17 85.9
Msa0250880 AT3G12810.1 43.750 80 45 0 491 570 1130 1209 1.17e-14 78.2
Msa0250880 AT3G12810.2 43.750 80 45 0 491 570 1126 1205 1.20e-14 78.2
Msa0250880 AT2G02090.1 46.341 82 44 0 488 569 640 721 5.26e-14 75.9
Msa0250880 AT1G03750.1 44.048 84 47 0 491 574 583 666 1.47e-13 74.3
Msa0250880 AT1G08600.1 40.909 88 50 1 489 574 1159 1246 1.47e-11 68.2
Msa0250880 AT1G08600.4 40.909 88 50 1 489 574 1180 1267 1.54e-11 68.2
Msa0250880 AT1G08600.3 40.909 88 50 1 489 574 1180 1267 1.54e-11 68.2
Msa0250880 AT1G08600.2 40.909 88 50 1 489 574 1180 1267 1.54e-11 68.2
Msa0250880 AT3G24340.1 44.156 77 42 1 491 566 987 1063 1.78e-11 67.8
Msa0250880 AT1G48310.3 29.480 173 90 3 425 569 433 601 5.23e-11 65.9
Msa0250880 AT1G48310.1 29.480 173 90 3 425 569 433 601 8.06e-11 65.5
Msa0250880 AT1G48310.2 29.480 173 90 3 425 569 438 606 8.17e-11 65.5

Find 112 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCACGTTCTCAATTTA+AGG 0.116064 2_2:+39935314 Msa0250880:CDS
TGAATAGAATTTCTGGATAT+TGG 0.151101 2_2:-39934333 None:intergenic
AATTCAAGGCTTCAGCTTTA+TGG 0.156810 2_2:-39933591 None:intergenic
GTAACCTTGAATAGAATTTC+TGG 0.162895 2_2:-39934340 None:intergenic
GCTATATAATGGAAGTAAAA+AGG 0.181324 2_2:+39934032 Msa0250880:CDS
TAAAGCTGAAGCCTTGAATT+TGG 0.196050 2_2:+39933594 Msa0250880:CDS
GAACTACTCGGTTCAATAAT+AGG 0.220766 2_2:-39933694 None:intergenic
TTGCAAAAGTAGGTTGGTTT+AGG 0.237456 2_2:+39934109 Msa0250880:CDS
CGCATGTCATGTTATTCTTT+TGG 0.239707 2_2:+39936786 Msa0250880:CDS
CACCTGCTACCTGGTAGTTT+TGG 0.260273 2_2:-39936248 None:intergenic
AGGAAACCTTGGTTTAAATA+TGG 0.268636 2_2:+39936759 Msa0250880:CDS
GAATAGAATTTCTGGATATT+GGG 0.273088 2_2:-39934332 None:intergenic
CCAGAGCTTGCTCCAGCCTT+AGG 0.279556 2_2:+39934181 Msa0250880:CDS
ATGATTTATATAGCTACTTT+AGG 0.279893 2_2:+39934253 Msa0250880:CDS
TTAGGAGGTAAAGTGATTAT+AGG 0.291303 2_2:-39935225 None:intergenic
CTCCTCGACTAAAGGTTGTT+TGG 0.312731 2_2:-39933935 None:intergenic
AAAGGCAATCACAGATAAAA+TGG 0.318808 2_2:+39933548 Msa0250880:CDS
TGCAAAAGTAGGTTGGTTTA+GGG 0.319202 2_2:+39934110 Msa0250880:CDS
TGTCTAGGAACTTTGCTTGA+TGG 0.323557 2_2:+39935198 Msa0250880:intron
AAACAGGAGTTTGCATTGCT+TGG 0.345698 2_2:+39933343 Msa0250880:CDS
AGCTTCCAACTTCTTGTAGA+AGG 0.347975 2_2:-39935292 None:intergenic
TCTGTGATTGCCTTTGCATT+AGG 0.354321 2_2:-39933540 None:intergenic
ATAGCTTGATCTTCAGTAGT+TGG 0.372539 2_2:-39936823 None:intergenic
AACAGGAGTTTGCATTGCTT+GGG 0.374896 2_2:+39933344 Msa0250880:CDS
ATTGATCGAGCTCATAGAAT+TGG 0.376291 2_2:+39936844 Msa0250880:CDS
TACAGTTGAAGATAGAATAT+TGG 0.382555 2_2:+39936909 Msa0250880:CDS
AAAAGAAGGTGGTGCTTGTC+TGG 0.385925 2_2:+39934207 Msa0250880:CDS
TGCGAGGGACAGAGCTGTTA+AGG 0.386134 2_2:+39936417 Msa0250880:CDS
TCCTCGACTAAAGGTTGTTT+GGG 0.397010 2_2:-39933934 None:intergenic
GATCAATCTGTTCAATAGTC+TGG 0.397409 2_2:+39935716 Msa0250880:CDS
ACCTTGTTCAAACAGGGTCT+TGG 0.402982 2_2:+39933490 Msa0250880:intron
AGATAGAATATTGGCTCTAC+AGG 0.403717 2_2:+39936918 Msa0250880:CDS
CACTGCGGAAGAACACTTGC+AGG 0.404921 2_2:-39933769 None:intergenic
GTGATCCGTGTCACAGTAAC+AGG 0.411769 2_2:-39936877 None:intergenic
CCTAAGGCTGGAGCAAGCTC+TGG 0.413231 2_2:-39934181 None:intergenic
ACCTCCTAAAACAATTAGTC+TGG 0.415124 2_2:+39935239 Msa0250880:CDS
AACTTTCTCATCAAGCTCTC+TGG 0.416549 2_2:-39933794 None:intergenic
AGATTGATCAGCATCTCCTT+TGG 0.419161 2_2:-39935702 None:intergenic
CAGAGCTTGCTCCAGCCTTA+GGG 0.421331 2_2:+39934182 Msa0250880:CDS
TCATCGATGGTATTCTGAAT+AGG 0.422137 2_2:-39934234 None:intergenic
ATCATCATCATCCAAATTCA+AGG 0.426949 2_2:-39933605 None:intergenic
CAGCATAAGGATCATACTTC+AGG 0.428885 2_2:-39934278 None:intergenic
TCAACAGAATCTTTCCCAAC+AGG 0.429310 2_2:-39935663 None:intergenic
TCTGGCTGCTAAGTCTTGAT+TGG 0.430086 2_2:+39934433 Msa0250880:CDS
GTAGAAGGCCCGCTCCTCAT+AGG 0.430281 2_2:-39935277 None:intergenic
TCCAGAAAATTGCACTGGCC+TGG 0.434059 2_2:+39933306 Msa0250880:five_prime_UTR
AAAGGTAGGAAGGGATTAGA+TGG 0.436702 2_2:+39934060 Msa0250880:CDS
ATATCCAGAAATTCTATTCA+AGG 0.436994 2_2:+39934336 Msa0250880:CDS
TGGTAGTATTGATGTGGAAA+AGG 0.445155 2_2:+39933633 Msa0250880:CDS
CTCAAACGATAAAGAATCAT+AGG 0.453758 2_2:+39934148 Msa0250880:CDS
GGATGCTTCAGAGGGAAAAC+AGG 0.455159 2_2:+39933327 Msa0250880:exon
AATATAATTCTGATCCTGTT+GGG 0.465695 2_2:+39935649 Msa0250880:CDS
AATGATTTATACACAGCATA+AGG 0.470686 2_2:-39934291 None:intergenic
TTGCAGGCATATGCAGCTGC+TGG 0.472343 2_2:+39935543 Msa0250880:intron
TGGGAAAGATTCTGTTGAAA+TGG 0.482246 2_2:+39935668 Msa0250880:CDS
CACTGGCCTGGATGCTTCAG+AGG 0.483760 2_2:+39933318 Msa0250880:exon
CACAGGCCCCAGGTAGGAAA+AGG 0.493320 2_2:+39933719 Msa0250880:CDS
AGAGAGCTTGATGAGAAAGT+TGG 0.493681 2_2:+39933796 Msa0250880:CDS
GAATATAATTCTGATCCTGT+TGG 0.494306 2_2:+39935648 Msa0250880:CDS
AACAATTAGTCTGGAGAAGG+TGG 0.502774 2_2:+39935248 Msa0250880:CDS
TGCAAGTGTTCTTCCGCAGT+GGG 0.508202 2_2:+39933771 Msa0250880:CDS
ATATCATCCTCCTCGACTAA+AGG 0.512463 2_2:-39933943 None:intergenic
AGGAGTTTGCATTGCTTGGG+GGG 0.512503 2_2:+39933347 Msa0250880:CDS
AAGGCCAGCTGCTGGTACAC+TGG 0.515179 2_2:+39933738 Msa0250880:CDS
TCACTAAAAGCAGGAAACCT+TGG 0.522451 2_2:+39936748 Msa0250880:CDS
ACCTTTCCAGAAAATTGCAC+TGG 0.526131 2_2:+39933301 Msa0250880:five_prime_UTR
TATATTCTTTAACAAGAAGC+GGG 0.526456 2_2:-39935632 None:intergenic
GCGGGCCTTCTACAAGAAGT+TGG 0.526893 2_2:+39935287 Msa0250880:CDS
ACAGGAGTTTGCATTGCTTG+GGG 0.528297 2_2:+39933345 Msa0250880:CDS
GGATTTCTCCTATGAGGAGC+GGG 0.529263 2_2:+39935269 Msa0250880:CDS
GCGCTCTTGCAAAAGTAGGT+TGG 0.530031 2_2:+39934103 Msa0250880:CDS
GATGGCTCTTCTTTCGATTG+CGG 0.537917 2_2:+39934078 Msa0250880:CDS
GAAGGTGGATTTCTCCTATG+AGG 0.540610 2_2:+39935263 Msa0250880:CDS
ATAATGCTACGTCGTACAAA+AGG 0.541045 2_2:+39934390 Msa0250880:CDS
CAGTAGTTGGATTCCACCAA+AGG 0.544822 2_2:-39936810 None:intergenic
GGTGGCGCTCTTGCAAAAGT+AGG 0.546852 2_2:+39934099 Msa0250880:CDS
ACAACCAGTGTACCAGCAGC+TGG 0.551867 2_2:-39933742 None:intergenic
TTATATTCTTTAACAAGAAG+CGG 0.557473 2_2:-39935633 None:intergenic
TGTGCTACATGAAATACCCT+TGG 0.558688 2_2:-39936223 None:intergenic
ATGCTGATGTCACTAAAAGC+AGG 0.559813 2_2:+39936739 Msa0250880:CDS
TAAAACAATTAGTCTGGAGA+AGG 0.560183 2_2:+39935245 Msa0250880:CDS
GGAGTTTGCATTGCTTGGGG+GGG 0.561095 2_2:+39933348 Msa0250880:CDS
CTGCAAGTGTTCTTCCGCAG+TGG 0.562759 2_2:+39933770 Msa0250880:CDS
GGTAGGAAAAGGCCAGCTGC+TGG 0.562826 2_2:+39933730 Msa0250880:CDS
CAGGAGTTTGCATTGCTTGG+GGG 0.563404 2_2:+39933346 Msa0250880:CDS
CTTAAAACCTAAATCAAGCC+AGG 0.571292 2_2:-39934481 None:intergenic
GGCTCTTCTTTCGATTGCGG+TGG 0.571687 2_2:+39934081 Msa0250880:CDS
CTCGTCCTGTTACTGTGACA+CGG 0.583353 2_2:+39936872 Msa0250880:CDS
CGGCAACCATATTTAAACCA+AGG 0.591292 2_2:-39936765 None:intergenic
GGATTTCAATACTGATCCTG+AGG 0.595725 2_2:+39936438 Msa0250880:CDS
AAAGAATCATAGGACTCAGA+TGG 0.603963 2_2:+39934158 Msa0250880:CDS
TCCCAAACAACCTTTAGTCG+AGG 0.605857 2_2:+39933933 Msa0250880:CDS
AGTAGTTCAACACAGGCCCC+AGG 0.608515 2_2:+39933709 Msa0250880:CDS
TTGGATGATGATGATGAGAA+TGG 0.612698 2_2:+39933613 Msa0250880:CDS
TTGCTCTCATCCTAATGCAA+AGG 0.614230 2_2:+39933530 Msa0250880:CDS
GCTTCAGCTTTATGGTTGCG+TGG 0.616461 2_2:-39933583 None:intergenic
GGGGCCTGTGTTGAACTACT+CGG 0.619233 2_2:-39933706 None:intergenic
ACTGCGGAAGAACACTTGCA+GGG 0.622118 2_2:-39933768 None:intergenic
ACTGGCCTGGATGCTTCAGA+GGG 0.622347 2_2:+39933319 Msa0250880:exon
CAGGATGACTCTTACTGCGA+GGG 0.633773 2_2:+39936402 Msa0250880:intron
GTAGCTATATAAATCATCGA+TGG 0.638700 2_2:-39934247 None:intergenic
TGGATTTCTCCTATGAGGAG+CGG 0.649808 2_2:+39935268 Msa0250880:CDS
TGAGAATGGTAGTATTGATG+TGG 0.651173 2_2:+39933627 Msa0250880:CDS
TAGCACAATCCAAAACTACC+AGG 0.654654 2_2:+39936239 Msa0250880:CDS
CAAACAACCTTTAGTCGAGG+AGG 0.655652 2_2:+39933936 Msa0250880:CDS
CAAAAGAATAACATGACATG+CGG 0.657977 2_2:-39936785 None:intergenic
GCGGGTGATCACAAGCCTGA+CGG 0.667422 2_2:-39935614 None:intergenic
TGAACCGAGTAGTTCAACAC+AGG 0.685975 2_2:+39933702 Msa0250880:CDS
ATTGCAGACACAGCATATAG+CGG 0.689831 2_2:-39935748 None:intergenic
GCAGGATGACTCTTACTGCG+AGG 0.690121 2_2:+39936401 Msa0250880:intron
GTTCAACACAGGCCCCAGGT+AGG 0.695205 2_2:+39933713 Msa0250880:CDS
TCAAGCTCTCTGGCCCACTG+CGG 0.725418 2_2:-39933784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATATTATATTTCTTTA+TGG - chr2_2:39935036-39935055 None:intergenic 10.0%
!!! TAGTTATAGAATATATTTTA+GGG + chr2_2:39936190-39936209 Msa0250880:intron 10.0%
!!! TTTGAATCATCATTTTTTTT+TGG + chr2_2:39933395-39933414 Msa0250880:intron 15.0%
!!! ATTTTTTTTTCTTCATAATC+TGG + chr2_2:39934415-39934434 Msa0250880:CDS 15.0%
!!! ATTTTCTTGTTTTTAAATGA+TGG + chr2_2:39934916-39934935 Msa0250880:intron 15.0%
!! ATGTATAATGTAATGAATTT+GGG + chr2_2:39935001-39935020 Msa0250880:intron 15.0%
!! AATATAATATTGTTTCGTTA+AGG + chr2_2:39935042-39935061 Msa0250880:intron 15.0%
!! ATATAATATTGTTTCGTTAA+GGG + chr2_2:39935043-39935062 Msa0250880:intron 15.0%
!!! TCAATTTATTTTATTTGTCT+AGG + chr2_2:39935183-39935202 Msa0250880:intron 15.0%
!! GTTAATATAAGCAATATAAA+AGG - chr2_2:39935347-39935366 None:intergenic 15.0%
!! TTATATTGCTTATATTAACT+TGG + chr2_2:39935348-39935367 Msa0250880:intron 15.0%
!! TTTGTCTAATGAATAATATT+AGG + chr2_2:39935904-39935923 Msa0250880:intron 15.0%
!!! GTAGTTATAGAATATATTTT+AGG + chr2_2:39936189-39936208 Msa0250880:intron 15.0%
!!! AGTTATAGAATATATTTTAG+GGG + chr2_2:39936191-39936210 Msa0250880:intron 15.0%
!!! AAAAAGCATATTTAATTTCT+TGG - chr2_2:39936571-39936590 None:intergenic 15.0%
!!! TTTCTGTTTTGATTTTTCAT+GGG + chr2_2:39933830-39933849 Msa0250880:CDS 20.0%
!!! CTTTTTATTGACAGAAAAAT+CGG - chr2_2:39934004-39934023 None:intergenic 20.0%
!!! ATTTTTCTGTCAATAAAAAG+AGG + chr2_2:39934004-39934023 Msa0250880:CDS 20.0%
!!! CTATATAATGGAAGTAAAAA+GGG + chr2_2:39934033-39934052 Msa0250880:CDS 20.0%
!!! ATGATTTATATAGCTACTTT+AGG + chr2_2:39934253-39934272 Msa0250880:CDS 20.0%
!! ATTCATTACATTATACATGA+TGG - chr2_2:39934999-39935018 None:intergenic 20.0%
!! CATGTATAATGTAATGAATT+TGG + chr2_2:39935000-39935019 Msa0250880:intron 20.0%
!!! TAGAAATTCGTTTTGATATT+GGG + chr2_2:39935422-39935441 Msa0250880:intron 20.0%
!! TTATATTCTTTAACAAGAAG+CGG - chr2_2:39935636-39935655 None:intergenic 20.0%
!! TGATATGATAATTTCGTTAT+TGG + chr2_2:39935783-39935802 Msa0250880:intron 20.0%
!!! GTTATAGAATATATTTTAGG+GGG + chr2_2:39936192-39936211 Msa0250880:intron 20.0%
!!! TTATAGAATATATTTTAGGG+GGG + chr2_2:39936193-39936212 Msa0250880:intron 20.0%
!! GTTTATTCAAATGAAGATAA+AGG + chr2_2:39936304-39936323 Msa0250880:intron 20.0%
!! ATCAACAAATTGATAAAACA+GGG - chr2_2:39936363-39936382 None:intergenic 20.0%
!! AATCAACAAATTGATAAAAC+AGG - chr2_2:39936364-39936383 None:intergenic 20.0%
!! ATTAAACTAATACCAGAAAT+TGG + chr2_2:39936632-39936651 Msa0250880:intron 20.0%
! TTTATAACCTTGTTCAAACA+GGG + chr2_2:39933484-39933503 Msa0250880:intron 25.0%
!! AATAATAGGTTTTGCATCAT+TGG - chr2_2:39933683-39933702 None:intergenic 25.0%
!!! CTTTCTGTTTTGATTTTTCA+TGG + chr2_2:39933829-39933848 Msa0250880:CDS 25.0%
!!! TTCTGTTTTGATTTTTCATG+GGG + chr2_2:39933831-39933850 Msa0250880:CDS 25.0%
! GATGATATTGATGAAAAAGA+CGG + chr2_2:39933958-39933977 Msa0250880:CDS 25.0%
! ATGATATTGATGAAAAAGAC+GGG + chr2_2:39933959-39933978 Msa0250880:CDS 25.0%
! AAGAGGAAAAAGCTATATAA+TGG + chr2_2:39934021-39934040 Msa0250880:CDS 25.0%
!! GCTATATAATGGAAGTAAAA+AGG + chr2_2:39934032-39934051 Msa0250880:CDS 25.0%
! AATGATTTATACACAGCATA+AGG - chr2_2:39934294-39934313 None:intergenic 25.0%
!! GAATAGAATTTCTGGATATT+GGG - chr2_2:39934335-39934354 None:intergenic 25.0%
!! TGAATAGAATTTCTGGATAT+TGG - chr2_2:39934336-39934355 None:intergenic 25.0%
! ATATCCAGAAATTCTATTCA+AGG + chr2_2:39934336-39934355 Msa0250880:CDS 25.0%
! AAACTTATCAAACTAATGGA+AGG - chr2_2:39934736-39934755 None:intergenic 25.0%
! TTAACGCCAAATATAATACT+TGG - chr2_2:39934791-39934810 None:intergenic 25.0%
! ACTCGTTAAAAAAGAAATCA+AGG - chr2_2:39934970-39934989 None:intergenic 25.0%
!! ACACCAACTTTAAAGAAAAT+CGG - chr2_2:39935115-39935134 None:intergenic 25.0%
!! ATTGCTTATATTAACTTGGT+TGG + chr2_2:39935352-39935371 Msa0250880:intron 25.0%
!!! CTAGAAATTCGTTTTGATAT+TGG + chr2_2:39935421-39935440 Msa0250880:intron 25.0%
! TATATTCTTTAACAAGAAGC+GGG - chr2_2:39935635-39935654 None:intergenic 25.0%
! AATATAATTCTGATCCTGTT+GGG + chr2_2:39935649-39935668 Msa0250880:CDS 25.0%
! AATAACATAACATGTACCAT+AGG - chr2_2:39935886-39935905 None:intergenic 25.0%
! GTCTAATGAATAATATTAGG+AGG + chr2_2:39935907-39935926 Msa0250880:intron 25.0%
! TAGAAAGTCATGTATTATGA+TGG + chr2_2:39936100-39936119 Msa0250880:intron 25.0%
! TAACTACTTTGTGATGATAT+GGG - chr2_2:39936176-39936195 None:intergenic 25.0%
! ATAACTACTTTGTGATGATA+TGG - chr2_2:39936177-39936196 None:intergenic 25.0%
!! ATGAAGATAAAGGATTTTCA+AGG + chr2_2:39936314-39936333 Msa0250880:intron 25.0%
!! TTACAGCTTTAACAATATTG+GGG - chr2_2:39936473-39936492 None:intergenic 25.0%
!! GTTACAGCTTTAACAATATT+GGG - chr2_2:39936474-39936493 None:intergenic 25.0%
!! AGTTACAGCTTTAACAATAT+TGG - chr2_2:39936475-39936494 None:intergenic 25.0%
!! TAAACCTAGATTTTCTTTGT+TGG + chr2_2:39936679-39936698 Msa0250880:intron 25.0%
!! ATCTTCAACTGTATCTTTTA+TGG - chr2_2:39936902-39936921 None:intergenic 25.0%
! TACAGTTGAAGATAGAATAT+TGG + chr2_2:39936909-39936928 Msa0250880:CDS 25.0%
CTTTATAACCTTGTTCAAAC+AGG + chr2_2:39933483-39933502 Msa0250880:intron 30.0%
AAAGGCAATCACAGATAAAA+TGG + chr2_2:39933548-39933567 Msa0250880:CDS 30.0%
ATCATCATCATCCAAATTCA+AGG - chr2_2:39933608-39933627 None:intergenic 30.0%
!!! TCTGTTTTGATTTTTCATGG+GGG + chr2_2:39933832-39933851 Msa0250880:CDS 30.0%
! TCATATTTTGCAAGTTCAAC+AGG - chr2_2:39933874-39933893 None:intergenic 30.0%
TGATATTGATGAAAAAGACG+GGG + chr2_2:39933960-39933979 Msa0250880:CDS 30.0%
TTTATTGACAGAAAAATCGG+AGG - chr2_2:39934001-39934020 None:intergenic 30.0%
GGAAGTAAAAAGGGTAAAAA+AGG + chr2_2:39934042-39934061 Msa0250880:CDS 30.0%
GTAAAAAGGGTAAAAAAGGT+AGG + chr2_2:39934046-39934065 Msa0250880:CDS 30.0%
CTCAAACGATAAAGAATCAT+AGG + chr2_2:39934148-39934167 Msa0250880:CDS 30.0%
GTAGCTATATAAATCATCGA+TGG - chr2_2:39934250-39934269 None:intergenic 30.0%
GTAACCTTGAATAGAATTTC+TGG - chr2_2:39934343-39934362 None:intergenic 30.0%
! AAAAACTTCAAGCAGTTTTG+AGG + chr2_2:39934364-39934383 Msa0250880:CDS 30.0%
!! AAAACTTCAAGCAGTTTTGA+GGG + chr2_2:39934365-39934384 Msa0250880:CDS 30.0%
! GTATGAATTTATCGTTTTCC+TGG + chr2_2:39934463-39934482 Msa0250880:CDS 30.0%
GTCATGAACTATAACTAAAG+AGG - chr2_2:39934534-39934553 None:intergenic 30.0%
GGCTAAACTTATCAAACTAA+TGG - chr2_2:39934740-39934759 None:intergenic 30.0%
TCGACACCAAGTATTATATT+TGG + chr2_2:39934782-39934801 Msa0250880:intron 30.0%
AATATGTCTAGCATTCTGAT+GGG - chr2_2:39934847-39934866 None:intergenic 30.0%
AAATATGTCTAGCATTCTGA+TGG - chr2_2:39934848-39934867 None:intergenic 30.0%
!!! TTTCTTTTTTAACGAGTCTG+TGG + chr2_2:39934973-39934992 Msa0250880:intron 30.0%
ACCTTGATGAGTAAAATGTT+CGG - chr2_2:39935075-39935094 None:intergenic 30.0%
! ATTTTACTCATCAAGGTTTC+TGG + chr2_2:39935078-39935097 Msa0250880:intron 30.0%
!!! ATCCCGATTTTCTTTAAAGT+TGG + chr2_2:39935109-39935128 Msa0250880:intron 30.0%
! CACCAACTTTAAAGAAAATC+GGG - chr2_2:39935114-39935133 None:intergenic 30.0%
!! TGGTGTCATATTTACTGTAT+AGG + chr2_2:39935129-39935148 Msa0250880:intron 30.0%
! GGTGTCATATTTACTGTATA+GGG + chr2_2:39935130-39935149 Msa0250880:intron 30.0%
GTGTCATATTTACTGTATAG+GGG + chr2_2:39935131-39935150 Msa0250880:intron 30.0%
TTAGGAGGTAAAGTGATTAT+AGG - chr2_2:39935228-39935247 None:intergenic 30.0%
! TTCTCCAGACTAATTGTTTT+AGG - chr2_2:39935246-39935265 None:intergenic 30.0%
! TAAAACAATTAGTCTGGAGA+AGG + chr2_2:39935245-39935264 Msa0250880:CDS 30.0%
TGATTCACGTTCTCAATTTA+AGG + chr2_2:39935314-39935333 Msa0250880:CDS 30.0%
!! TCTAGACACTAATTTTGACA+GGG - chr2_2:39935406-39935425 None:intergenic 30.0%
!! TTCTAGACACTAATTTTGAC+AGG - chr2_2:39935407-39935426 None:intergenic 30.0%
! ATCTGATATTTCTATGCTGA+TGG + chr2_2:39935480-39935499 Msa0250880:intron 30.0%
GAATATAATTCTGATCCTGT+TGG + chr2_2:39935648-39935667 Msa0250880:CDS 30.0%
ACTTGTAAGATGCAATCAAA+AGG - chr2_2:39935854-39935873 None:intergenic 30.0%
! GTTTACTCTGATCATGTTTT+AGG + chr2_2:39935989-39936008 Msa0250880:intron 30.0%
TACACTTTGTTCACAAAATC+AGG + chr2_2:39936048-39936067 Msa0250880:intron 30.0%
ATGGAAACAAGTCAAAGTTA+AGG + chr2_2:39936119-39936138 Msa0250880:intron 30.0%
!! AAGATAAAGGATTTTCAAGG+AGG + chr2_2:39936317-39936336 Msa0250880:intron 30.0%
!! AGATAAAGGATTTTCAAGGA+GGG + chr2_2:39936318-39936337 Msa0250880:intron 30.0%
TGATTGATTACTGAACTTGA+TGG + chr2_2:39936379-39936398 Msa0250880:intron 30.0%
ACAGTAGATAATCCAATTTC+TGG - chr2_2:39936647-39936666 None:intergenic 30.0%
AGGAAACCTTGGTTTAAATA+TGG + chr2_2:39936759-39936778 Msa0250880:CDS 30.0%
CAAAAGAATAACATGACATG+CGG - chr2_2:39936788-39936807 None:intergenic 30.0%
! ATGTTATTCTTTTGGACCTT+TGG + chr2_2:39936794-39936813 Msa0250880:CDS 30.0%
AATTCAAGGCTTCAGCTTTA+TGG - chr2_2:39933594-39933613 None:intergenic 35.0%
TAAAGCTGAAGCCTTGAATT+TGG + chr2_2:39933594-39933613 Msa0250880:CDS 35.0%
! TTGGATGATGATGATGAGAA+TGG + chr2_2:39933613-39933632 Msa0250880:CDS 35.0%
!! TGAGAATGGTAGTATTGATG+TGG + chr2_2:39933627-39933646 Msa0250880:CDS 35.0%
!! TGGTAGTATTGATGTGGAAA+AGG + chr2_2:39933633-39933652 Msa0250880:CDS 35.0%
GAACTACTCGGTTCAATAAT+AGG - chr2_2:39933697-39933716 None:intergenic 35.0%
AAAGGGTAAAAAAGGTAGGA+AGG + chr2_2:39934050-39934069 Msa0250880:CDS 35.0%
AAGGGTAAAAAAGGTAGGAA+GGG + chr2_2:39934051-39934070 Msa0250880:CDS 35.0%
!! TTGCAAAAGTAGGTTGGTTT+AGG + chr2_2:39934109-39934128 Msa0250880:CDS 35.0%
!! TGCAAAAGTAGGTTGGTTTA+GGG + chr2_2:39934110-39934129 Msa0250880:CDS 35.0%
AAAGAATCATAGGACTCAGA+TGG + chr2_2:39934158-39934177 Msa0250880:CDS 35.0%
TCATCGATGGTATTCTGAAT+AGG - chr2_2:39934237-39934256 None:intergenic 35.0%
! TTTTGTACGACGTAGCATTA+TGG - chr2_2:39934391-39934410 None:intergenic 35.0%
ATAATGCTACGTCGTACAAA+AGG + chr2_2:39934390-39934409 Msa0250880:CDS 35.0%
CTTAAAACCTAAATCAAGCC+AGG - chr2_2:39934484-39934503 None:intergenic 35.0%
CTCATTTCCTTCTCTAACTT+TGG + chr2_2:39934581-39934600 Msa0250880:intron 35.0%
! AAGAATGAATGTGTGCTGAT+TGG - chr2_2:39934612-39934631 None:intergenic 35.0%
AGACTTGACATCATTACAAC+TGG - chr2_2:39934652-39934671 None:intergenic 35.0%
CTTATCAAACTAATGGAAGG+TGG - chr2_2:39934733-39934752 None:intergenic 35.0%
TAGTTTGATAAGTTTAGCCG+AGG + chr2_2:39934741-39934760 Msa0250880:intron 35.0%
AGTTTGATAAGTTTAGCCGA+GGG + chr2_2:39934742-39934761 Msa0250880:intron 35.0%
ATATTGTTTCGTTAAGGGAG+TGG + chr2_2:39935048-39935067 Msa0250880:intron 35.0%
! ACCGAACATTTTACTCATCA+AGG + chr2_2:39935071-39935090 Msa0250880:intron 35.0%
TACTGTATAGGGGTGATTAT+TGG + chr2_2:39935141-39935160 Msa0250880:intron 35.0%
ACCTCCTAAAACAATTAGTC+TGG + chr2_2:39935239-39935258 Msa0250880:CDS 35.0%
!!! TCCAGACTAATTGTTTTAGG+AGG - chr2_2:39935243-39935262 None:intergenic 35.0%
!! TTCGTTTTGATATTGGGTCA+AGG + chr2_2:39935428-39935447 Msa0250880:intron 35.0%
ATGAAATGCTTGTACTTTGC+AGG + chr2_2:39935527-39935546 Msa0250880:intron 35.0%
TGGGAAAGATTCTGTTGAAA+TGG + chr2_2:39935668-39935687 Msa0250880:CDS 35.0%
AATGGCAAAAAAGCTTCCAA+AGG + chr2_2:39935686-39935705 Msa0250880:CDS 35.0%
GATCAATCTGTTCAATAGTC+TGG + chr2_2:39935716-39935735 Msa0250880:CDS 35.0%
TACAAGTCTTACTCTTCCTA+TGG + chr2_2:39935867-39935886 Msa0250880:intron 35.0%
!!! CGTCACACTATTAGTCTTTT+CGG + chr2_2:39936014-39936033 Msa0250880:intron 35.0%
ACATGACTTTCTAACACTGA+AGG - chr2_2:39936093-39936112 None:intergenic 35.0%
!! GGAGTTCTAGTTGTATGTTT+TGG + chr2_2:39936140-39936159 Msa0250880:intron 35.0%
! AGCTTTAACAATATTGGGGA+TGG - chr2_2:39936469-39936488 None:intergenic 35.0%
GGTTCTTACATCACATTTCT+TGG - chr2_2:39936525-39936544 None:intergenic 35.0%
TACTTCAGCTACTAACAAAC+AGG - chr2_2:39936546-39936565 None:intergenic 35.0%
TCAGCCAACAAAGAAAATCT+AGG - chr2_2:39936686-39936705 None:intergenic 35.0%
! CGCATGTCATGTTATTCTTT+TGG + chr2_2:39936786-39936805 Msa0250880:CDS 35.0%
! TTATTCTTTTGGACCTTTGG+TGG + chr2_2:39936797-39936816 Msa0250880:CDS 35.0%
ATAGCTTGATCTTCAGTAGT+TGG - chr2_2:39936826-39936845 None:intergenic 35.0%
ATTGATCGAGCTCATAGAAT+TGG + chr2_2:39936844-39936863 Msa0250880:CDS 35.0%
!! AGATAGAATATTGGCTCTAC+AGG + chr2_2:39936918-39936937 Msa0250880:CDS 35.0%
ACCTTTCCAGAAAATTGCAC+TGG + chr2_2:39933301-39933320 Msa0250880:five_prime_UTR 40.0%
AAACAGGAGTTTGCATTGCT+TGG + chr2_2:39933343-39933362 Msa0250880:CDS 40.0%
AACAGGAGTTTGCATTGCTT+GGG + chr2_2:39933344-39933363 Msa0250880:CDS 40.0%
TTGCTCTCATCCTAATGCAA+AGG + chr2_2:39933530-39933549 Msa0250880:CDS 40.0%
TCTGTGATTGCCTTTGCATT+AGG - chr2_2:39933543-39933562 None:intergenic 40.0%
AACTTTCTCATCAAGCTCTC+TGG - chr2_2:39933797-39933816 None:intergenic 40.0%
AGAGAGCTTGATGAGAAAGT+TGG + chr2_2:39933796-39933815 Msa0250880:CDS 40.0%
TCCTCGACTAAAGGTTGTTT+GGG - chr2_2:39933937-39933956 None:intergenic 40.0%
ATATCATCCTCCTCGACTAA+AGG - chr2_2:39933946-39933965 None:intergenic 40.0%
GAAAAAGACGGGGAAAAGTT+TGG + chr2_2:39933970-39933989 Msa0250880:CDS 40.0%
AAAGGTAGGAAGGGATTAGA+TGG + chr2_2:39934060-39934079 Msa0250880:CDS 40.0%
CAGCATAAGGATCATACTTC+AGG - chr2_2:39934281-39934300 None:intergenic 40.0%
!! TCGTTTTCCTGGCTTGATTT+AGG + chr2_2:39934474-39934493 Msa0250880:CDS 40.0%
!! AATGAATGTGTGCTGATTGG+TGG - chr2_2:39934609-39934628 None:intergenic 40.0%
GCACACATTCATTCTTGTAC+AGG + chr2_2:39934616-39934635 Msa0250880:intron 40.0%
TTTCATGGAGGGAAGAACAA+AGG - chr2_2:39934822-39934841 None:intergenic 40.0%
TCTGATGGGAATTTCATGGA+GGG - chr2_2:39934833-39934852 None:intergenic 40.0%
TTCTGATGGGAATTTCATGG+AGG - chr2_2:39934834-39934853 None:intergenic 40.0%
GCATTCTGATGGGAATTTCA+TGG - chr2_2:39934837-39934856 None:intergenic 40.0%
TGTCTAGGAACTTTGCTTGA+TGG + chr2_2:39935198-39935217 Msa0250880:intron 40.0%
! AACAATTAGTCTGGAGAAGG+TGG + chr2_2:39935248-39935267 Msa0250880:CDS 40.0%
AGCTTCCAACTTCTTGTAGA+AGG - chr2_2:39935295-39935314 None:intergenic 40.0%
TCAACAGAATCTTTCCCAAC+AGG - chr2_2:39935666-39935685 None:intergenic 40.0%
AGATTGATCAGCATCTCCTT+TGG - chr2_2:39935705-39935724 None:intergenic 40.0%
ATTGCAGACACAGCATATAG+CGG - chr2_2:39935751-39935770 None:intergenic 40.0%
TTGTGCCTCCTAAAAACATC+CGG + chr2_2:39935821-39935840 Msa0250880:intron 40.0%
! GATCCATACCGGATGTTTTT+AGG - chr2_2:39935832-39935851 None:intergenic 40.0%
GCAATCAAAAGGATCCATAC+CGG - chr2_2:39935843-39935862 None:intergenic 40.0%
TGTGCTACATGAAATACCCT+TGG - chr2_2:39936226-39936245 None:intergenic 40.0%
TAGCACAATCCAAAACTACC+AGG + chr2_2:39936239-39936258 Msa0250880:CDS 40.0%
! TGATTACTGAACTTGATGGC+AGG + chr2_2:39936383-39936402 Msa0250880:intron 40.0%
GGATTTCAATACTGATCCTG+AGG + chr2_2:39936438-39936457 Msa0250880:CDS 40.0%
TCAATACTGATCCTGAGGTT+TGG + chr2_2:39936443-39936462 Msa0250880:intron 40.0%
ATGCTGATGTCACTAAAAGC+AGG + chr2_2:39936739-39936758 Msa0250880:CDS 40.0%
TCACTAAAAGCAGGAAACCT+TGG + chr2_2:39936748-39936767 Msa0250880:CDS 40.0%
CGGCAACCATATTTAAACCA+AGG - chr2_2:39936768-39936787 None:intergenic 40.0%
!! GCCAGTGCAATTTTCTGGAA+AGG - chr2_2:39933305-39933324 None:intergenic 45.0%
ACAGGAGTTTGCATTGCTTG+GGG + chr2_2:39933345-39933364 Msa0250880:CDS 45.0%
ACCTTGTTCAAACAGGGTCT+TGG + chr2_2:39933490-39933509 Msa0250880:intron 45.0%
TCCAAGACCCTGTTTGAACA+AGG - chr2_2:39933494-39933513 None:intergenic 45.0%
TGAACCGAGTAGTTCAACAC+AGG + chr2_2:39933702-39933721 Msa0250880:CDS 45.0%
! TGATTTTTCATGGGGGCAGT+AGG + chr2_2:39933839-39933858 Msa0250880:CDS 45.0%
TCCCAAACAACCTTTAGTCG+AGG + chr2_2:39933933-39933952 Msa0250880:CDS 45.0%
CTCCTCGACTAAAGGTTGTT+TGG - chr2_2:39933938-39933957 None:intergenic 45.0%
CAAACAACCTTTAGTCGAGG+AGG + chr2_2:39933936-39933955 Msa0250880:CDS 45.0%
GATGGCTCTTCTTTCGATTG+CGG + chr2_2:39934078-39934097 Msa0250880:CDS 45.0%
! ACCACCTTCTTTTTGCCCTA+AGG - chr2_2:39934200-39934219 None:intergenic 45.0%
AAAAGAAGGTGGTGCTTGTC+TGG + chr2_2:39934207-39934226 Msa0250880:CDS 45.0%
TCTGGCTGCTAAGTCTTGAT+TGG + chr2_2:39934433-39934452 Msa0250880:CDS 45.0%
GGTGGTACCAAAGTTAGAGA+AGG - chr2_2:39934591-39934610 None:intergenic 45.0%
GACATCATTACAACTGGACG+AGG - chr2_2:39934646-39934665 None:intergenic 45.0%
! AAGCGAGTCATTGATGATCC+TGG + chr2_2:39934686-39934705 Msa0250880:intron 45.0%
GCATGGCAAGAATTCTTTCC+AGG - chr2_2:39934707-39934726 None:intergenic 45.0%
!! TTTAGCCGAGGGTTTTGTAG+TGG + chr2_2:39934753-39934772 Msa0250880:intron 45.0%
ACACACCACTACAAAACCCT+CGG - chr2_2:39934761-39934780 None:intergenic 45.0%
! GAAGGTGGATTTCTCCTATG+AGG + chr2_2:39935263-39935282 Msa0250880:CDS 45.0%
TGGATTTCTCCTATGAGGAG+CGG + chr2_2:39935268-39935287 Msa0250880:CDS 45.0%
! AATGCTTTTACGTCTCCGTC+AGG + chr2_2:39935599-39935618 Msa0250880:CDS 45.0%
! AGGAGGCACAATTGCAACAA+AGG - chr2_2:39935812-39935831 None:intergenic 45.0%
!!! CCATACCGGATGTTTTTAGG+AGG - chr2_2:39935829-39935848 None:intergenic 45.0%
CCTCCTAAAAACATCCGGTA+TGG + chr2_2:39935826-39935845 Msa0250880:intron 45.0%
! TTAGGAGGTACACTTCTCGA+TGG + chr2_2:39935922-39935941 Msa0250880:intron 45.0%
ATCCAAAACTACCAGGTAGC+AGG + chr2_2:39936246-39936265 Msa0250880:intron 45.0%
AAATCACATCACCTGCTACC+TGG - chr2_2:39936260-39936279 None:intergenic 45.0%
ACTGATTAGCAGTGCACTCA+GGG - chr2_2:39936609-39936628 None:intergenic 45.0%
! TACTGATTAGCAGTGCACTC+AGG - chr2_2:39936610-39936629 None:intergenic 45.0%
CAGTAGTTGGATTCCACCAA+AGG - chr2_2:39936813-39936832 None:intergenic 45.0%
! TCCAGAAAATTGCACTGGCC+TGG + chr2_2:39933306-39933325 Msa0250880:five_prime_UTR 50.0%
! TCCAGGCCAGTGCAATTTTC+TGG - chr2_2:39933310-39933329 None:intergenic 50.0%
!!! GTTTTCCCTCTGAAGCATCC+AGG - chr2_2:39933327-39933346 None:intergenic 50.0%
GGATGCTTCAGAGGGAAAAC+AGG + chr2_2:39933327-39933346 Msa0250880:exon 50.0%
CAGGAGTTTGCATTGCTTGG+GGG + chr2_2:39933346-39933365 Msa0250880:CDS 50.0%
AGGAGTTTGCATTGCTTGGG+GGG + chr2_2:39933347-39933366 Msa0250880:CDS 50.0%
!!! GGGGATTTTGGCTGATGATC+AGG + chr2_2:39933367-39933386 Msa0250880:CDS 50.0%
! GCTTCAGCTTTATGGTTGCG+TGG - chr2_2:39933586-39933605 None:intergenic 50.0%
ACTGCGGAAGAACACTTGCA+GGG - chr2_2:39933771-39933790 None:intergenic 50.0%
TGCAAGTGTTCTTCCGCAGT+GGG + chr2_2:39933771-39933790 Msa0250880:CDS 50.0%
GCGCTCTTGCAAAAGTAGGT+TGG + chr2_2:39934103-39934122 Msa0250880:CDS 50.0%
! CCTTCTTTTTGCCCTAAGGC+TGG - chr2_2:39934196-39934215 None:intergenic 50.0%
CCAGCCTTAGGGCAAAAAGA+AGG + chr2_2:39934193-39934212 Msa0250880:CDS 50.0%
GCCTTAGGGCAAAAAGAAGG+TGG + chr2_2:39934196-39934215 Msa0250880:CDS 50.0%
! CTAATGGAAGGTGGCTTGCA+TGG - chr2_2:39934724-39934743 None:intergenic 50.0%
GGATTTCTCCTATGAGGAGC+GGG + chr2_2:39935269-39935288 Msa0250880:CDS 50.0%
TTTAGGGGGGATGCATTCCA+AGG + chr2_2:39936206-39936225 Msa0250880:intron 50.0%
TTAGGGGGGATGCATTCCAA+GGG + chr2_2:39936207-39936226 Msa0250880:intron 50.0%
! CACCTGCTACCTGGTAGTTT+TGG - chr2_2:39936251-39936270 None:intergenic 50.0%
CAGGATGACTCTTACTGCGA+GGG + chr2_2:39936402-39936421 Msa0250880:intron 50.0%
CTCGTCCTGTTACTGTGACA+CGG + chr2_2:39936872-39936891 Msa0250880:CDS 50.0%
GTGATCCGTGTCACAGTAAC+AGG - chr2_2:39936880-39936899 None:intergenic 50.0%
! ACTGGCCTGGATGCTTCAGA+GGG + chr2_2:39933319-39933338 Msa0250880:exon 55.0%
GGAGTTTGCATTGCTTGGGG+GGG + chr2_2:39933348-39933367 Msa0250880:CDS 55.0%
! GCATTGCTTGGGGGGGATTT+TGG + chr2_2:39933355-39933374 Msa0250880:CDS 55.0%
GGGGCCTGTGTTGAACTACT+CGG - chr2_2:39933709-39933728 None:intergenic 55.0%
AGTAGTTCAACACAGGCCCC+AGG + chr2_2:39933709-39933728 Msa0250880:CDS 55.0%
!!! AGCTGGCCTTTTCCTACCTG+GGG - chr2_2:39933728-39933747 None:intergenic 55.0%
!!! CAGCTGGCCTTTTCCTACCT+GGG - chr2_2:39933729-39933748 None:intergenic 55.0%
ACAACCAGTGTACCAGCAGC+TGG - chr2_2:39933745-39933764 None:intergenic 55.0%
CACTGCGGAAGAACACTTGC+AGG - chr2_2:39933772-39933791 None:intergenic 55.0%
CTGCAAGTGTTCTTCCGCAG+TGG + chr2_2:39933770-39933789 Msa0250880:CDS 55.0%
TCATGGGGGCAGTAGGACAA+AGG + chr2_2:39933846-39933865 Msa0250880:CDS 55.0%
GGCTCTTCTTTCGATTGCGG+TGG + chr2_2:39934081-39934100 Msa0250880:CDS 55.0%
GGTGGCGCTCTTGCAAAAGT+AGG + chr2_2:39934099-39934118 Msa0250880:CDS 55.0%
! CAGAGCTTGCTCCAGCCTTA+GGG + chr2_2:39934182-39934201 Msa0250880:CDS 55.0%
GCGGGCCTTCTACAAGAAGT+TGG + chr2_2:39935287-39935306 Msa0250880:CDS 55.0%
TTGCAGGCATATGCAGCTGC+TGG + chr2_2:39935543-39935562 Msa0250880:intron 55.0%
GCAGGATGACTCTTACTGCG+AGG + chr2_2:39936401-39936420 Msa0250880:intron 55.0%
TGCGAGGGACAGAGCTGTTA+AGG + chr2_2:39936417-39936436 Msa0250880:CDS 55.0%
ATTGGGGATGGCCAAACCTC+AGG - chr2_2:39936457-39936476 None:intergenic 55.0%
! CACTGGCCTGGATGCTTCAG+AGG + chr2_2:39933318-39933337 Msa0250880:exon 60.0%
GTTCAACACAGGCCCCAGGT+AGG + chr2_2:39933713-39933732 Msa0250880:CDS 60.0%
CACAGGCCCCAGGTAGGAAA+AGG + chr2_2:39933719-39933738 Msa0250880:CDS 60.0%
!!! GCAGCTGGCCTTTTCCTACC+TGG - chr2_2:39933730-39933749 None:intergenic 60.0%
GGTAGGAAAAGGCCAGCTGC+TGG + chr2_2:39933730-39933749 Msa0250880:CDS 60.0%
AAGGCCAGCTGCTGGTACAC+TGG + chr2_2:39933738-39933757 Msa0250880:CDS 60.0%
TCAAGCTCTCTGGCCCACTG+CGG - chr2_2:39933787-39933806 None:intergenic 60.0%
CCTAAGGCTGGAGCAAGCTC+TGG - chr2_2:39934184-39934203 None:intergenic 60.0%
! CCAGAGCTTGCTCCAGCCTT+AGG + chr2_2:39934181-39934200 Msa0250880:CDS 60.0%
GTAGAAGGCCCGCTCCTCAT+AGG - chr2_2:39935280-39935299 None:intergenic 60.0%
GCGGGTGATCACAAGCCTGA+CGG - chr2_2:39935617-39935636 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 39933301 39936945 39933301 ID=Msa0250880;Name=Msa0250880
chr2_2 mRNA 39933301 39936945 39933301 ID=Msa0250880-mRNA-1;Parent=Msa0250880;Name=Msa0250880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=28|0.16|0.14|0.85|0.83|0.85|7|0|574
chr2_2 exon 39933301 39933388 39933301 ID=Msa0250880-mRNA-1:exon:12334;Parent=Msa0250880-mRNA-1
chr2_2 exon 39933505 39934495 39933505 ID=Msa0250880-mRNA-1:exon:12335;Parent=Msa0250880-mRNA-1
chr2_2 exon 39935205 39935335 39935205 ID=Msa0250880-mRNA-1:exon:12336;Parent=Msa0250880-mRNA-1
chr2_2 exon 39935549 39935770 39935549 ID=Msa0250880-mRNA-1:exon:12337;Parent=Msa0250880-mRNA-1
chr2_2 exon 39936211 39936260 39936211 ID=Msa0250880-mRNA-1:exon:12338;Parent=Msa0250880-mRNA-1
chr2_2 exon 39936405 39936459 39936405 ID=Msa0250880-mRNA-1:exon:12339;Parent=Msa0250880-mRNA-1
chr2_2 exon 39936730 39936945 39936730 ID=Msa0250880-mRNA-1:exon:12340;Parent=Msa0250880-mRNA-1
chr2_2 five_prime_UTR 39933301 39933328 39933301 ID=Msa0250880-mRNA-1:five_prime_utr;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39933329 39933388 39933329 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39933505 39934495 39933505 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39935205 39935335 39935205 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39935549 39935770 39935549 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39936211 39936260 39936211 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39936405 39936459 39936405 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
chr2_2 CDS 39936730 39936945 39936730 ID=Msa0250880-mRNA-1:cds;Parent=Msa0250880-mRNA-1
Gene Sequence

>Msa0250880

ATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGAGAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATCCACGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAGAATGGTAGTATTGATGTGGAAAAGGAAAAGCTTAAAAATGATGAAGAATCCAATGATGCAAAACCTATTATTGAACCGAGTAGTTCAACACAGGCCCCAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCCGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTAGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAACAACCTTTAGTCGAGGAGGATGATATTGATGAAAAAGACGGGGAAAAGTTTGGCTTATCCTCCGATTTTTCTGTCAATAAAAAGAGGAAAAAGCTATATAATGGAAGTAAAAAGGGTAAAAAAGGTAGGAAGGGATTAGATGGCTCTTCTTTCGATTGCGGTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCAAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACCATCGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCTATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGTGATTTTTTTTTCTTCATAATCTGGCTGCTAAGTCTTGATTGGATAGATTGTATGAATTTATCGTTTTCCTGGCTTGATTTAGGAACTTTGCTTGATGGCAAGCCTATAATCACTTTACCTCCTAAAACAATTAGTCTGGAGAAGGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCAGCTGCTGGCACAGTAAATCAAAACTACGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCGCTTCTTGTTAAAGAATATAATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAAGGAGATGCTGATCAATCTGTTCAATAGTCTGGAAACAACTTCCGCTATATGCTGTGTCTGCAATGGGGGATGCATTCCAAGGGTATTTCATGTAGCACAATCCAAAACTACCAGGATGACTCTTACTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCCGCATGTCATGTTATTCTTTTGGACCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATATTGGCTCTACAGGTTTAA
Protein sequence

>Msa0250880

MLQRENRSLHCLGGILADDQGLGKRISTIALILMQRQSQIKWKTDDPRNHKAEALNLDDDDENGSIDVEKEKLKNDEESNDAKPIIEPSSSTQAPGRKRPAAGTLVVCPASVLPQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEEDDIDEKDGEKFGLSSDFSVNKKRKKLYNGSKKGKKGRKGLDGSSFDCGGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGDFFFFIIWLLSLDWIDCMNLSFSWLDLGTLLDGKPIITLPPKTISLEKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKKLPKEMLINLFNSLETTSAICCVCNGGCIPRVFHVAQSKTTRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQV*