AlfalfaGEDB | Msa0606360

M. sativa cultivar zhongmu-4 / Msa0606360

KEGG: K11498
GO: GO:0000166 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008144 GO:0008150 GO:0009506 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030054 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035371 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901265 GO:1901363 GO:1990752
PFAM: PF00225.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0606360	XP_024637572.2	97.712	874	19	1	1	873	1	874	0.0	1764

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0606360	sp\|F4IGL2\|KN7E_ARATH	58.434	907	296	17	1	872	1	861	0.0	983

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0606360	A0A396IEY9	97.712	874	19	1	1	873	1	874	0.0	1764

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004880	Msa0606360	0.802748	4.842216e-49	-8.615850e-47
Msa0078650	Msa0606360	0.805374	1.377023e-49	-8.615850e-47
Msa0126370	Msa0606360	0.812608	3.891983e-51	-8.615850e-47
Msa0140780	Msa0606360	0.800710	1.268664e-48	-8.615850e-47
Msa0191040	Msa0606360	0.816368	5.734078e-52	-8.615850e-47
Msa0233340	Msa0606360	0.816769	4.662648e-52	-8.615850e-47
Msa0245940	Msa0606360	0.811123	8.194093e-51	-8.615850e-47
Msa0270100	Msa0606360	0.801639	8.187774e-49	-8.615850e-47
Msa0287650	Msa0606360	0.800543	1.372079e-48	-8.615850e-47
Msa0311690	Msa0606360	0.809881	1.519380e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0606360	MtrunA17_Chr4g0036001	97.712	874	19	1	1	873	1	874	0.0	1764
Msa0606360	MtrunA17_Chr5g0405181	60.579	553	152	9	1	493	1	547	0.0	632
Msa0606360	MtrunA17_Chr5g0405181	44.781	297	139	6	575	865	669	946	3.74e-65	236
Msa0606360	MtrunA17_Chr8g0372171	71.034	435	117	3	1	431	1	430	0.0	625
Msa0606360	MtrunA17_Chr8g0372171	36.864	236	113	8	548	765	813	1030	2.10e-27	119
Msa0606360	MtrunA17_Chr3g0142261	62.708	421	145	4	19	438	14	423	1.59e-166	523
Msa0606360	MtrunA17_Chr3g0142261	38.113	265	135	9	623	872	1270	1520	1.25e-42	169
Msa0606360	MtrunA17_Chr6g0483701	57.820	422	165	5	17	435	23	434	3.70e-148	461
Msa0606360	MtrunA17_Chr6g0483701	40.773	233	129	4	632	855	711	943	2.95e-45	176
Msa0606360	MtrunA17_Chr4g0070001	53.922	408	166	4	22	429	141	526	2.75e-130	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0606360	AT2G21300.2	58.434	907	296	17	1	872	1	861	983
Msa0606360	AT2G21300.4	58.434	907	296	17	1	872	1	861	983
Msa0606360	AT2G21300.3	58.434	907	296	17	1	872	1	861	983
Msa0606360	AT2G21300.1	58.434	907	296	17	1	872	1	861	983
Msa0606360	AT2G21300.5	58.434	907	296	17	1	872	1	861	983
Msa0606360	AT4G38950.3	58.305	885	275	20	22	872	11	835	936
Msa0606360	AT4G38950.5	58.305	885	275	20	22	872	11	835	936
Msa0606360	AT4G38950.4	58.305	885	275	20	22	872	11	835	936
Msa0606360	AT4G38950.1	58.305	885	275	20	22	872	11	835	936
Msa0606360	AT4G38950.2	58.305	885	275	20	22	872	11	835	936

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Find 221 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTATTTAACGAATG+GGG	0.654647	4_2:+52607695	Msa0606360:CDS
AAAGAAAGAAGTAGGTCCTG+TGG	0.614224	4_2:-52607361	None:intergenic
AAAGAGTTGGCCAGGTTGGA+AGG	0.537609	4_2:+52605516	Msa0606360:CDS
AAAGCAGCTTGTTGATGGTC+AGG	0.521553	4_2:+52606739	Msa0606360:CDS
AAATCTAATAGCATTAAACT+TGG	0.518445	4_2:-52602136	None:intergenic
AAATGCTTATGAAGCTTATG+CGG	0.625303	4_2:+52607648	Msa0606360:CDS
AACAATCCTCAATATAATAG+TGG	0.503991	4_2:+52606023	Msa0606360:CDS
AACAGATTCCATTTACATGG+AGG	0.691503	4_2:+52607400	Msa0606360:CDS
AACCTTAATTTGCAGCAAGA+AGG	0.489869	4_2:-52608239	None:intergenic
AACCTTCACGCAATGTATTC+CGG	0.415906	4_2:-52603183	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGTGTATGCTGAAAAAGA+AGG	+	chr4_2:52602301-52602320	Msa0606360:five_prime_UTR	30.0%
TCATAATTGGTTACTGTAGA+AGG	+	chr4_2:52602424-52602443	Msa0606360:intron	30.0%
TAAAAGAGAAAAAGCGAAAC+GGG	-	chr4_2:52602917-52602936	None:intergenic	30.0%
CTAAAAGAGAAAAAGCGAAA+CGG	-	chr4_2:52602918-52602937	None:intergenic	30.0%
TTAATTGAGGTGGAAAAAGA+GGG	+	chr4_2:52602973-52602992	Msa0606360:five_prime_UTR	30.0%
GTTTGGAAGTGAGAAAAAAT+GGG	+	chr4_2:52602995-52603014	Msa0606360:exon	30.0%
GAAATTTCCTTCTCATTCAA+AGG	-	chr4_2:52603112-52603131	None:intergenic	30.0%
TGTAAATTGAATTAGCCAAC+AGG	-	chr4_2:52603539-52603558	None:intergenic	30.0%
TATTCAGAAAAACTCTGTTC+AGG	-	chr4_2:52603733-52603752	None:intergenic	30.0%
AATTCCTTTACCTTCACAAA+AGG	-	chr4_2:52604466-52604485	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	52601933	52608363	52601933	ID=Msa0606360;Name=Msa0606360
chr4_2	mRNA	52601933	52608363	52601933	ID=Msa0606360-mRNA-1;Parent=Msa0606360;Name=Msa0606360-mRNA-1;_AED=0.11;_eAED=0.11;_QI=465\|1\|1\|1\|0.92\|0.86\|15\|426\|873
chr4_2	exon	52601933	52602322	52601933	ID=Msa0606360-mRNA-1:exon:12915;Parent=Msa0606360-mRNA-1
chr4_2	exon	52602938	52603232	52602938	ID=Msa0606360-mRNA-1:exon:12916;Parent=Msa0606360-mRNA-1
chr4_2	exon	52603773	52603862	52603773	ID=Msa0606360-mRNA-1:exon:12917;Parent=Msa0606360-mRNA-1
chr4_2	exon	52603948	52604048	52603948	ID=Msa0606360-mRNA-1:exon:12918;Parent=Msa0606360-mRNA-1
chr4_2	exon	52604178	52604291	52604178	ID=Msa0606360-mRNA-1:exon:12919;Parent=Msa0606360-mRNA-1
chr4_2	exon	52604393	52604474	52604393	ID=Msa0606360-mRNA-1:exon:12920;Parent=Msa0606360-mRNA-1
chr4_2	exon	52604740	52604807	52604740	ID=Msa0606360-mRNA-1:exon:12921;Parent=Msa0606360-mRNA-1
chr4_2	exon	52604890	52604955	52604890	ID=Msa0606360-mRNA-1:exon:12922;Parent=Msa0606360-mRNA-1
chr4_2	exon	52605067	52605191	52605067	ID=Msa0606360-mRNA-1:exon:12923;Parent=Msa0606360-mRNA-1
chr4_2	exon	52605284	52605614	52605284	ID=Msa0606360-mRNA-1:exon:12924;Parent=Msa0606360-mRNA-1
chr4_2	exon	52605718	52605819	52605718	ID=Msa0606360-mRNA-1:exon:12925;Parent=Msa0606360-mRNA-1
chr4_2	exon	52605942	52606068	52605942	ID=Msa0606360-mRNA-1:exon:12926;Parent=Msa0606360-mRNA-1
chr4_2	exon	52606189	52606760	52606189	ID=Msa0606360-mRNA-1:exon:12927;Parent=Msa0606360-mRNA-1
chr4_2	exon	52607206	52607513	52607206	ID=Msa0606360-mRNA-1:exon:12928;Parent=Msa0606360-mRNA-1
chr4_2	exon	52607622	52608363	52607622	ID=Msa0606360-mRNA-1:exon:12929;Parent=Msa0606360-mRNA-1
chr4_2	five_prime_UTR	52601933	52602322	52601933	ID=Msa0606360-mRNA-1:five_prime_utr;Parent=Msa0606360-mRNA-1
chr4_2	five_prime_UTR	52602938	52603012	52602938	ID=Msa0606360-mRNA-1:five_prime_utr;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52603013	52603232	52603013	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52603773	52603862	52603773	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52603948	52604048	52603948	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52604178	52604291	52604178	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52604393	52604474	52604393	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52604740	52604807	52604740	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52604890	52604955	52604890	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52605067	52605191	52605067	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52605284	52605614	52605284	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52605718	52605819	52605718	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52605942	52606068	52605942	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52606189	52606760	52606189	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52607206	52607513	52607206	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	CDS	52607622	52607937	52607622	ID=Msa0606360-mRNA-1:cds;Parent=Msa0606360-mRNA-1
chr4_2	three_prime_UTR	52607938	52608363	52607938	ID=Msa0606360-mRNA-1:three_prime_utr;Parent=Msa0606360-mRNA-1

Gene Sequence

>Msa0606360

ATGGGAGCTATTGCTGGAGAAGAGTTGTCGAAATGGGAGAAGATGAATGGAGTTAGTGGTTGTGAAGAGAAGATTCTTGTGTTACTTAGGCTTAGGCCTTTGAATGAGAAGGAAATTTCTGCTAATGAATCTGCAGATTGGGAATGTATTAATGATACTACGATTTTGTACCGGAATACATTGCGTGAAGGTTCTACGTTTCCAAGTGCCTACACATTTGACAGAGTATTTCGGGGTGACTGTGAAACGAAGCAGGTATATGAGGAAGGAGCTAGGGAAATCGCTCTTTCAGTAGTCGGTGGAATTAACTCGAGTATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACATATACTATGGTCGGAATAACTGAATTTGCTGTAGCAGATATTTTTGACTACGCAAAAAGGCATGAAGAAAGAGCATTTGCATTGAAGTTCTCAGCAATTGAGATTTACAATGAAATTGTTAGAGATCTTCTCAGCACTGACAACACTCCACTTAGGTTGCGTGATGATCCTGAGAGAGGACCCGTTCTAGAGAAACTTACAGAGGAGACTCTACAGGATTGGGGGCATTTTCAAGAGCTCCTATCCTTTTGTGAAGCTCAGAGACAAGTAGGAGAGACATACCTGAATGAAAAGAGTTCAAGATCTCACCAAATTATCAGATTGACCATTGAAAGTTCTGCCAGGGAATTTCTGGGCAAAGGAAACTCAACCACCCTATCAGCTAGTGTAAATTTTGTTGATTTGGCAGGGAGCGAGCGTGCATCTCAGGTATCATCAGCTGGGGTGAGATTGAAAGAAGGTTGCCATATAAACCGGAGTTTACTTACTCTTTCGACCGTCATTCGTAAGCTGAGTAAGGGAAGACATGGACACATCAATTACAGAGATTCTAAGTTGACACGCATACTGCAGCCTTGCTTAGGTGGCAATGCTAGAACAGCTATCATTTGCACTTTGAGCCCTGCACGGAGTCATGTTGAACAAACTAGAAACACACTTCTTTTTGCTTGTTGTGCAAAAGAAGTTACCACTAAAGCACAGGTTAATGTAGTGATGTCTGATAAGGCCTTGGTCAAGCAATTGCAAAAAGAGTTGGCCAGGTTGGAAGGCGAGTTAAAAACTCCTGCTACCTCCAACACTGATTATGTAGCTTTGTTGAGAAAGAAAGATCAACAGATAGAAAAGATGGATAAGGAAATTAAGGAGCTAACTAAGCAACGTGATCTTGCTGAATCAAGGATTGAGGATTTGCTGCGCATGGTGGGGAAGGATCAGATATCTAAAAAGGAAGAAGATTTATGGGAAGATGACTGTTCAGTATCAGAGTCCTCAAGCATTTGTGGTCCCAACATATGCATTAGAGAGTTCAACAATCCTCAATATAATAGTGGAGACAGTGGAAGTATTCAAGATGAAGAAGACCTTGATGAATACTGCAAAGAAGTTCGATGTGTCGAGTTGGAAGAGTCAAGTAGAGACAACTCAGAATTACTTGATCCGTCCTTAAGTGACAACGGGGATTTGGCTTTGACAGTATCTGGAGGGGAAAATGGAACAAGCCAGGAAATGTCTACACATTTGAATGAAGACAGCCATGATGAACAATCTCTACATGCCATGTCAGGAAACATGTCAAATTATAGAAATCACAAATTAACTAGAAGCCGGAGTTGTTCGGAGCATCACATGACTGCTTCCCCTGAGACAGGAGAAATGGAGAGGACGCCATTCAATGGGTTTGAAAAAGGATTCCCTGGAAGACCAGATGGTTTATGGAGAAAGTTCAATCCATTAAATTTAGATGGTTCAACAAGATTTTCAAGGAACGATTCTCAGTCTTCTATTGGAAGTCCGTCAGTGGATGACCTTAGAGGCAACAGCTTGAGATCATCTGGTGATGAGGACATTACTAGCATCCATACTTTTGTTGCTGGGATGAAAGAAATGGTCAAACTTGAATATGAAAAGCAGCTTGTTGATGGTCAGGGTCAGGAGACAGATAGAAAACTGAGGAATGTGAAAGATGTAGGTGTTGATCCAATGCAGGAGGCACCAGGAACTCCTTTAGACTGGTCTCTGCAGTTCAAGAGGCAGCAAAAAGAGATAATTGAACTGTGGCAATCTTGCTATGTACCATTAACCCACAGGACCTACTTCTTTCTTTTGTTTAGGGGTGAACAAACAGATTCCATTTACATGGAGGTAGAGCTTAGAAGACTATGCTTCCTGAAAGAAACATTTTTTGATGAAAACCAGTCTGAGAAAGACAGCCAGACAATCACGTTAACTTCAAGTGTGAGAGCTCTTCGGCGGGAGAAAGAAATGCTTATGAAGCTTATGCGGAAGAGGCTTTCTGAGGAAGAGAGGAAAAGGCTATTTAACGAATGGGGCATTGGATTGAATTCAAAGCGCAGGAGAATGCAGCTAGCAGACCGTTTATGGTGCAACACTGATATGAACCACGTAATGCAGAGTGCTGCAATAGTTGCGAGGCTAGTGAGGTTTTCAGAGCAGGGACGAGCCCTCAAGGAGATGTTTGGACTTAGCTTCACACCTCAGCTAACACGGCGAAGCCATTCATGGAAAAGTTCAAGAGCATCTCTTCCTTAG

Protein sequence

>Msa0606360

MGAIAGEELSKWEKMNGVSGCEEKILVLLRLRPLNEKEISANESADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDCETKQVYEEGAREIALSVVGGINSSIFAYGQTSSGKTYTMVGITEFAVADIFDYAKRHEERAFALKFSAIEIYNEIVRDLLSTDNTPLRLRDDPERGPVLEKLTEETLQDWGHFQELLSFCEAQRQVGETYLNEKSSRSHQIIRLTIESSAREFLGKGNSTTLSASVNFVDLAGSERASQVSSAGVRLKEGCHINRSLLTLSTVIRKLSKGRHGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKQLQKELARLEGELKTPATSNTDYVALLRKKDQQIEKMDKEIKELTKQRDLAESRIEDLLRMVGKDQISKKEEDLWEDDCSVSESSSICGPNICIREFNNPQYNSGDSGSIQDEEDLDEYCKEVRCVELEESSRDNSELLDPSLSDNGDLALTVSGGENGTSQEMSTHLNEDSHDEQSLHAMSGNMSNYRNHKLTRSRSCSEHHMTASPETGEMERTPFNGFEKGFPGRPDGLWRKFNPLNLDGSTRFSRNDSQSSIGSPSVDDLRGNSLRSSGDEDITSIHTFVAGMKEMVKLEYEKQLVDGQGQETDRKLRNVKDVGVDPMQEAPGTPLDWSLQFKRQQKEIIELWQSCYVPLTHRTYFFLLFRGEQTDSIYMEVELRRLCFLKETFFDENQSEKDSQTITLTSSVRALRREKEMLMKLMRKRLSEEERKRLFNEWGIGLNSKRRRMQLADRLWCNTDMNHVMQSAAIVARLVRFSEQGRALKEMFGLSFTPQLTRRSHSWKSSRASLP*