Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782890 | sp|Q00763|COMT1_POPTM | 66.759 | 361 | 119 | 1 | 6 | 366 | 6 | 365 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782890 | G7K511 | 98.087 | 366 | 6 | 1 | 1 | 366 | 1 | 365 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072940 | Msa0782890 | 0.811198 | 7.893768e-51 | -8.615850e-47 |
| Msa0652610 | Msa0782890 | 0.809483 | 1.850515e-50 | -8.615850e-47 |
| Msa0716620 | Msa0782890 | 0.832868 | 7.393952e-56 | -8.615850e-47 |
| Msa0744550 | Msa0782890 | 0.816653 | 4.949526e-52 | -8.615850e-47 |
| Msa0744560 | Msa0782890 | 0.807091 | 5.987265e-50 | -8.615850e-47 |
| Msa0744710 | Msa0782890 | 0.817170 | 3.788576e-52 | -8.615850e-47 |
| Msa0751970 | Msa0782890 | 0.803041 | 4.212507e-49 | -8.615850e-47 |
| Msa0772350 | Msa0782890 | 0.804266 | 2.346443e-49 | -8.615850e-47 |
| Msa0782890 | Msa0815650 | 0.817939 | 2.542370e-52 | -8.615850e-47 |
| Msa0782890 | Msa0826240 | 0.827964 | 1.169718e-54 | -8.615850e-47 |
| Msa0782890 | Msa0826360 | 0.840665 | 7.581646e-58 | -8.615850e-47 |
| Msa0782890 | Msa0826370 | 0.817946 | 2.532616e-52 | -8.615850e-47 |
| Msa0782890 | Msa0837550 | 0.801564 | 8.484266e-49 | -8.615850e-47 |
| Msa0782890 | Msa0865810 | 0.827628 | 1.408819e-54 | -8.615850e-47 |
| Msa0782890 | Msa0865820 | 0.805321 | 1.412493e-49 | -8.615850e-47 |
| Msa0782890 | Msa0865830 | 0.816755 | 4.696060e-52 | -8.615850e-47 |
| Msa0782890 | Msa0945320 | 0.815256 | 1.014809e-51 | -8.615850e-47 |
| Msa0782890 | Msa0976400 | 0.809589 | 1.755735e-50 | -8.615850e-47 |
| Msa0782890 | Msa1023430 | 0.829347 | 5.414866e-55 | -8.615850e-47 |
| Msa0782890 | Msa1061840 | 0.815393 | 9.459094e-52 | -8.615850e-47 |
| Msa0782890 | Msa1107510 | 0.825309 | 5.027782e-54 | -8.615850e-47 |
| Msa0782890 | Msa1110900 | 0.816460 | 5.466850e-52 | -8.615850e-47 |
| Msa0782890 | Msa1151070 | 0.816313 | 5.897050e-52 | -8.615850e-47 |
| Msa0782890 | Msa1459930 | 0.812690 | 3.733943e-51 | -8.615850e-47 |
| Msa0129290 | Msa0782890 | 0.813418 | 2.584969e-51 | -8.615850e-47 |
| Msa0200090 | Msa0782890 | 0.809319 | 2.006933e-50 | -8.615850e-47 |
| Msa0398770 | Msa0782890 | 0.802288 | 6.022313e-49 | -8.615850e-47 |
| Msa0480540 | Msa0782890 | 0.810201 | 1.296460e-50 | -8.615850e-47 |
| Msa0480550 | Msa0782890 | 0.800936 | 1.140674e-48 | -8.615850e-47 |
| Msa0242710 | Msa0782890 | 0.801552 | 8.532502e-49 | -8.615850e-47 |
| Msa0242720 | Msa0782890 | 0.850066 | 2.158504e-60 | -8.615850e-47 |
| Msa0303650 | Msa0782890 | 0.800473 | 1.417619e-48 | -8.615850e-47 |
| Msa0320160 | Msa0782890 | 0.804039 | 2.615818e-49 | -8.615850e-47 |
| Msa0513670 | Msa0782890 | 0.802361 | 5.819446e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782890 | MtrunA17_Chr5g0448091 | 98.087 | 366 | 6 | 1 | 1 | 366 | 1 | 365 | 0.0 | 744 |
| Msa0782890 | MtrunA17_Chr3g0128011 | 68.376 | 351 | 110 | 1 | 14 | 364 | 68 | 417 | 0.0 | 525 |
| Msa0782890 | MtrunA17_Chr7g0276411 | 53.501 | 357 | 161 | 3 | 11 | 364 | 8 | 362 | 5.75e-139 | 399 |
| Msa0782890 | MtrunA17_Chr8g0367441 | 52.632 | 361 | 168 | 2 | 6 | 364 | 18 | 377 | 1.19e-137 | 396 |
| Msa0782890 | MtrunA17_Chr8g0367451 | 51.247 | 361 | 173 | 2 | 6 | 364 | 17 | 376 | 6.95e-132 | 382 |
| Msa0782890 | MtrunA17_Chr8g0367491 | 51.149 | 348 | 167 | 2 | 19 | 364 | 30 | 376 | 2.04e-131 | 380 |
| Msa0782890 | MtrunA17_Chr7g0276401 | 48.333 | 360 | 181 | 3 | 5 | 364 | 21 | 375 | 6.67e-125 | 364 |
| Msa0782890 | MtrunA17_Chr8g0367501 | 49.020 | 357 | 177 | 3 | 12 | 364 | 10 | 365 | 1.24e-118 | 350 |
| Msa0782890 | MtrunA17_Chr8g0367381 | 50.760 | 329 | 140 | 3 | 6 | 332 | 18 | 326 | 2.42e-117 | 343 |
| Msa0782890 | MtrunA17_Chr1g0200491 | 44.915 | 354 | 190 | 5 | 15 | 364 | 20 | 372 | 4.07e-103 | 308 |
| Msa0782890 | MtrunA17_Chr7g0218131 | 42.210 | 353 | 197 | 6 | 16 | 364 | 21 | 370 | 3.30e-99 | 298 |
| Msa0782890 | MtrunA17_Chr8g0345851 | 49.458 | 277 | 138 | 2 | 90 | 364 | 14 | 290 | 1.14e-96 | 289 |
| Msa0782890 | MtrunA17_Chr7g0218211 | 43.220 | 354 | 192 | 7 | 16 | 364 | 20 | 369 | 9.07e-96 | 290 |
| Msa0782890 | MtrunA17_Chr3g0085211 | 45.125 | 359 | 185 | 9 | 12 | 364 | 18 | 370 | 7.19e-95 | 287 |
| Msa0782890 | MtrunA17_Chr7g0218301 | 43.137 | 357 | 193 | 6 | 16 | 364 | 21 | 375 | 1.68e-94 | 286 |
| Msa0782890 | MtrunA17_Chr7g0218271 | 42.577 | 357 | 195 | 6 | 16 | 364 | 21 | 375 | 1.71e-93 | 284 |
| Msa0782890 | MtrunA17_Chr3g0085201 | 43.978 | 357 | 184 | 8 | 16 | 364 | 9 | 357 | 2.45e-93 | 283 |
| Msa0782890 | MtrunA17_Chr7g0218261 | 43.343 | 353 | 192 | 7 | 16 | 364 | 20 | 368 | 4.62e-93 | 283 |
| Msa0782890 | MtrunA17_Chr7g0218181 | 40.845 | 355 | 196 | 7 | 16 | 364 | 21 | 367 | 7.10e-92 | 280 |
| Msa0782890 | MtrunA17_Chr1g0163611 | 40.000 | 355 | 203 | 6 | 17 | 364 | 19 | 370 | 4.08e-91 | 278 |
| Msa0782890 | MtrunA17_Chr2g0307521 | 41.477 | 352 | 200 | 6 | 16 | 364 | 15 | 363 | 4.36e-91 | 277 |
| Msa0782890 | MtrunA17_Chr1g0163601 | 40.282 | 355 | 202 | 6 | 17 | 364 | 19 | 370 | 8.08e-91 | 277 |
| Msa0782890 | MtrunA17_Chr1g0163621 | 39.889 | 361 | 205 | 7 | 12 | 364 | 28 | 384 | 1.74e-87 | 269 |
| Msa0782890 | MtrunA17_Chr2g0314271 | 35.977 | 353 | 217 | 6 | 15 | 364 | 8 | 354 | 3.70e-70 | 223 |
| Msa0782890 | MtrunA17_Chr6g0482291 | 53.804 | 184 | 77 | 1 | 181 | 364 | 1 | 176 | 4.04e-69 | 214 |
| Msa0782890 | MtrunA17_Chr3g0130011 | 35.262 | 363 | 227 | 5 | 5 | 364 | 1 | 358 | 5.98e-68 | 218 |
| Msa0782890 | MtrunA17_Chr3g0130061 | 36.438 | 365 | 220 | 8 | 5 | 364 | 1 | 358 | 1.43e-67 | 217 |
| Msa0782890 | MtrunA17_Chr4g0022021 | 35.043 | 351 | 210 | 9 | 5 | 350 | 17 | 354 | 3.65e-67 | 216 |
| Msa0782890 | MtrunA17_Chr4g0021981 | 36.313 | 358 | 196 | 12 | 5 | 350 | 17 | 354 | 8.15e-67 | 215 |
| Msa0782890 | MtrunA17_Chr3g0121301 | 37.383 | 321 | 184 | 9 | 35 | 350 | 39 | 347 | 5.51e-63 | 205 |
| Msa0782890 | MtrunA17_Chr1g0188391 | 35.077 | 325 | 195 | 8 | 34 | 350 | 31 | 347 | 2.32e-50 | 172 |
| Msa0782890 | MtrunA17_Chr1g0188371 | 34.473 | 351 | 212 | 9 | 1 | 344 | 1 | 340 | 3.28e-50 | 172 |
| Msa0782890 | MtrunA17_Chr5g0432251 | 32.099 | 324 | 206 | 8 | 34 | 351 | 31 | 346 | 2.43e-48 | 167 |
| Msa0782890 | MtrunA17_Chr7g0219161 | 33.739 | 329 | 196 | 8 | 34 | 353 | 31 | 346 | 4.11e-48 | 166 |
| Msa0782890 | MtrunA17_Chr5g0432301 | 31.385 | 325 | 207 | 10 | 34 | 351 | 32 | 347 | 2.02e-47 | 164 |
| Msa0782890 | MtrunA17_Chr5g0432241 | 30.675 | 326 | 208 | 8 | 34 | 351 | 32 | 347 | 5.88e-46 | 160 |
| Msa0782890 | MtrunA17_Chr7g0219141 | 32.416 | 327 | 199 | 8 | 34 | 351 | 31 | 344 | 4.33e-44 | 155 |
| Msa0782890 | MtrunA17_Chr4g0040621 | 31.902 | 326 | 201 | 10 | 34 | 351 | 44 | 356 | 6.90e-44 | 155 |
| Msa0782890 | MtrunA17_Chr8g0367401 | 61.468 | 109 | 42 | 0 | 158 | 266 | 2 | 110 | 7.55e-43 | 145 |
| Msa0782890 | MtrunA17_Chr7g0223231 | 31.464 | 321 | 204 | 7 | 33 | 350 | 29 | 336 | 9.04e-43 | 152 |
| Msa0782890 | MtrunA17_Chr5g0432211 | 31.804 | 327 | 189 | 12 | 34 | 351 | 31 | 332 | 6.22e-42 | 149 |
| Msa0782890 | MtrunA17_Chr4g0046361 | 33.636 | 330 | 199 | 10 | 32 | 351 | 29 | 348 | 8.14e-42 | 149 |
| Msa0782890 | MtrunA17_Chr7g0223241 | 32.609 | 322 | 199 | 8 | 33 | 350 | 29 | 336 | 5.56e-41 | 147 |
| Msa0782890 | MtrunA17_Chr4g0046531 | 32.099 | 324 | 203 | 8 | 33 | 350 | 30 | 342 | 3.81e-40 | 150 |
| Msa0782890 | MtrunA17_Chr4g0046531 | 30.556 | 324 | 208 | 8 | 33 | 350 | 392 | 704 | 7.12e-38 | 144 |
| Msa0782890 | MtrunA17_Chr8g0367461 | 54.464 | 112 | 51 | 0 | 253 | 364 | 1 | 112 | 8.32e-40 | 137 |
| Msa0782890 | MtrunA17_Chr4g0014641 | 32.733 | 333 | 205 | 12 | 34 | 355 | 31 | 355 | 1.75e-37 | 138 |
| Msa0782890 | MtrunA17_Chr8g0367391 | 52.830 | 106 | 50 | 0 | 259 | 364 | 29 | 134 | 6.70e-37 | 130 |
| Msa0782890 | MtrunA17_Chr5g0432261 | 40.854 | 164 | 92 | 3 | 192 | 351 | 152 | 314 | 7.54e-37 | 135 |
| Msa0782890 | MtrunA17_Chr4g0014561 | 33.533 | 334 | 201 | 12 | 34 | 355 | 31 | 355 | 8.74e-35 | 131 |
| Msa0782890 | MtrunA17_Chr4g0014681 | 33.533 | 334 | 201 | 12 | 34 | 355 | 31 | 355 | 1.12e-34 | 130 |
| Msa0782890 | MtrunA17_Chr4g0014661 | 33.840 | 263 | 156 | 9 | 32 | 288 | 29 | 279 | 3.06e-34 | 129 |
| Msa0782890 | MtrunA17_Chr4g0046341 | 33.434 | 332 | 202 | 10 | 31 | 351 | 28 | 351 | 5.03e-33 | 126 |
| Msa0782890 | MtrunA17_Chr4g0014591 | 34.375 | 256 | 150 | 9 | 34 | 283 | 31 | 274 | 3.64e-32 | 124 |
| Msa0782890 | MtrunA17_Chr8g0367421 | 50.459 | 109 | 37 | 1 | 158 | 266 | 2 | 93 | 1.92e-28 | 107 |
| Msa0782890 | MtrunA17_Chr8g0367481 | 43.165 | 139 | 74 | 3 | 6 | 141 | 18 | 154 | 4.12e-28 | 107 |
| Msa0782890 | MtrunA17_Chr8g0367411 | 43.182 | 132 | 72 | 2 | 12 | 141 | 3 | 133 | 9.08e-27 | 103 |
| Msa0782890 | MtrunA17_Chr1g0170941 | 55.263 | 76 | 34 | 0 | 189 | 264 | 1 | 76 | 2.42e-25 | 97.8 |
| Msa0782890 | MtrunA17_Chr6g0482281 | 38.158 | 152 | 87 | 2 | 3 | 147 | 15 | 166 | 1.22e-23 | 96.7 |
| Msa0782890 | MtrunA17_Chr4g0014601 | 32.645 | 242 | 144 | 10 | 34 | 269 | 31 | 259 | 1.27e-23 | 98.6 |
| Msa0782890 | MtrunA17_Chr8g0367471 | 52.000 | 75 | 36 | 0 | 181 | 255 | 1 | 75 | 6.81e-21 | 86.3 |
| Msa0782890 | MtrunA17_Chr7g0219171 | 36.364 | 121 | 72 | 2 | 234 | 351 | 117 | 235 | 7.48e-21 | 90.5 |
| Msa0782890 | MtrunA17_Chr1g0170951 | 48.000 | 75 | 36 | 2 | 275 | 348 | 17 | 89 | 5.37e-14 | 67.4 |
| Msa0782890 | MtrunA17_Chr1g0170931 | 36.458 | 96 | 57 | 2 | 33 | 125 | 18 | 112 | 1.52e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782890 | AT5G54160.1 | 62.963 | 351 | 127 | 2 | 14 | 364 | 14 | 361 | 9.10e-171 | 480 |
| Msa0782890 | AT1G77520.1 | 46.631 | 371 | 186 | 5 | 1 | 364 | 16 | 381 | 2.95e-115 | 340 |
| Msa0782890 | AT1G33030.1 | 46.154 | 351 | 174 | 5 | 22 | 365 | 9 | 351 | 3.26e-111 | 328 |
| Msa0782890 | AT1G51990.1 | 44.068 | 354 | 194 | 4 | 15 | 365 | 11 | 363 | 7.56e-106 | 315 |
| Msa0782890 | AT1G51990.2 | 43.785 | 354 | 195 | 4 | 15 | 365 | 11 | 363 | 4.40e-105 | 313 |
| Msa0782890 | AT1G77530.1 | 47.568 | 370 | 182 | 6 | 2 | 364 | 17 | 381 | 1.19e-100 | 303 |
| Msa0782890 | AT1G63140.2 | 45.968 | 372 | 186 | 6 | 1 | 364 | 17 | 381 | 7.00e-98 | 296 |
| Msa0782890 | AT1G63140.4 | 45.968 | 372 | 186 | 6 | 1 | 364 | 37 | 401 | 1.26e-97 | 296 |
| Msa0782890 | AT5G53810.1 | 45.748 | 341 | 177 | 6 | 32 | 364 | 38 | 378 | 3.70e-95 | 288 |
| Msa0782890 | AT1G21130.1 | 44.944 | 356 | 185 | 9 | 16 | 364 | 22 | 373 | 7.29e-95 | 288 |
| Msa0782890 | AT1G21100.1 | 44.444 | 360 | 188 | 9 | 13 | 364 | 18 | 373 | 7.18e-94 | 285 |
| Msa0782890 | AT1G21110.1 | 43.889 | 360 | 190 | 9 | 13 | 364 | 18 | 373 | 1.07e-92 | 282 |
| Msa0782890 | AT1G21120.1 | 44.167 | 360 | 189 | 9 | 13 | 364 | 18 | 373 | 3.15e-92 | 281 |
| Msa0782890 | AT1G21120.2 | 44.167 | 360 | 189 | 9 | 13 | 364 | 66 | 421 | 1.98e-91 | 280 |
| Msa0782890 | AT1G76790.1 | 42.978 | 356 | 184 | 8 | 23 | 366 | 19 | 367 | 5.64e-89 | 272 |
| Msa0782890 | AT5G37170.1 | 41.587 | 315 | 147 | 7 | 57 | 364 | 50 | 334 | 1.78e-76 | 239 |
| Msa0782890 | AT1G33030.3 | 46.275 | 255 | 122 | 5 | 22 | 269 | 9 | 255 | 3.05e-74 | 231 |
| Msa0782890 | AT3G53140.1 | 36.314 | 369 | 216 | 8 | 5 | 364 | 1 | 359 | 3.26e-74 | 234 |
| Msa0782890 | AT1G33030.2 | 46.429 | 252 | 120 | 5 | 22 | 266 | 9 | 252 | 2.01e-73 | 229 |
| Msa0782890 | AT5G37170.2 | 47.964 | 221 | 111 | 3 | 146 | 364 | 16 | 234 | 5.53e-67 | 211 |
| Msa0782890 | AT1G62900.1 | 53.171 | 205 | 95 | 1 | 161 | 364 | 1 | 205 | 5.73e-65 | 205 |
| Msa0782890 | AT5G37170.3 | 52.151 | 186 | 87 | 2 | 181 | 364 | 1 | 186 | 5.48e-62 | 197 |
| Msa0782890 | AT1G63140.1 | 44.322 | 273 | 138 | 5 | 1 | 266 | 37 | 302 | 1.15e-61 | 200 |
| Msa0782890 | AT1G21130.2 | 45.914 | 257 | 129 | 8 | 16 | 266 | 22 | 274 | 4.19e-60 | 196 |
| Msa0782890 | AT1G77530.2 | 44.444 | 252 | 129 | 5 | 2 | 247 | 17 | 263 | 2.44e-51 | 172 |
| Msa0782890 | AT1G63140.3 | 41.339 | 254 | 135 | 5 | 1 | 247 | 37 | 283 | 1.45e-48 | 166 |
| Msa0782890 | AT4G35150.1 | 31.285 | 358 | 182 | 11 | 8 | 350 | 2 | 310 | 9.91e-46 | 159 |
| Msa0782890 | AT4G35160.1 | 31.622 | 370 | 220 | 11 | 2 | 350 | 10 | 367 | 1.19e-43 | 155 |
Find 73 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGTTCCTGACTCAAATT+TGG | 0.198979 | 5_2:-66408680 | Msa0782890:CDS |
| AAATTAATGGCTTTAATATT+AGG | 0.210143 | 5_2:+66409221 | None:intergenic |
| ATAGCATATGATTGAGAAAA+TGG | 0.253902 | 5_2:-66411918 | Msa0782890:exon |
| ATTCCATAAGCATTGTAAAA+TGG | 0.318888 | 5_2:+66409431 | None:intergenic |
| CTAAAATCAGCTTTGGAACT+TGG | 0.326330 | 5_2:-66411806 | Msa0782890:CDS |
| AGAGAAAGAGTTTGAGGCTT+TGG | 0.327658 | 5_2:-66408590 | Msa0782890:CDS |
| ATGGGGCAAGTCAAAATTAA+TGG | 0.344745 | 5_2:+66409208 | None:intergenic |
| GAAGATGAAAGGTGAGCATT+TGG | 0.346978 | 5_2:+66411755 | None:intergenic |
| AAAGTTCTTGAGACATATTC+AGG | 0.350312 | 5_2:-66409320 | Msa0782890:CDS |
| GGACCGATTATTGCGTCTAT+TGG | 0.359684 | 5_2:-66411678 | Msa0782890:CDS |
| AAATTTGAGTCAGGAACTAT+TGG | 0.365050 | 5_2:+66408682 | None:intergenic |
| CTAATCATACATAAGACTAT+TGG | 0.368327 | 5_2:+66408330 | None:intergenic |
| AATGGTTCTAAAATCAGCTT+TGG | 0.388431 | 5_2:-66411813 | Msa0782890:CDS |
| GATTCTATTGAAAGGCTCTA+TGG | 0.399724 | 5_2:-66411611 | Msa0782890:CDS |
| GTTGATGTTGGTGGTGGAAC+TGG | 0.407689 | 5_2:-66409275 | Msa0782890:CDS |
| CTTGGATCTATTGTTGATGT+TGG | 0.408159 | 5_2:-66409287 | Msa0782890:CDS |
| GTGAGCATTTGGACCAGCTT+TGG | 0.412821 | 5_2:+66411766 | None:intergenic |
| GATGTTGAATGGAGCAAGTA+AGG | 0.417684 | 5_2:+66411642 | None:intergenic |
| GAGTTTGAGGCTTTGGCTAA+AGG | 0.425332 | 5_2:-66408583 | Msa0782890:CDS |
| TTTGAGGCCAAATTTGAGTC+AGG | 0.429615 | 5_2:+66408673 | None:intergenic |
| GAGAACAGAGAAAGAGTTTG+AGG | 0.430797 | 5_2:-66408596 | Msa0782890:CDS |
| TATCATACCACATGTCTTTG+AGG | 0.434430 | 5_2:+66411504 | None:intergenic |
| AAAGATACAATTACCAGAAA+AGG | 0.445894 | 5_2:+66408476 | None:intergenic |
| AATAATCGGTCCAACATAGA+AGG | 0.446180 | 5_2:+66411689 | None:intergenic |
| AGGTGCTTCTGCTGCTCCAA+TGG | 0.449418 | 5_2:-66411831 | Msa0782890:CDS |
| CATGAGAAATGAAGAAATCA+TGG | 0.451767 | 5_2:+66411541 | None:intergenic |
| ATCTCCATCTTGATGTTGAA+TGG | 0.454950 | 5_2:+66411631 | None:intergenic |
| TGAACCTTTGATCTGTGCTA+TGG | 0.464990 | 5_2:+66409393 | None:intergenic |
| GAGGCTTTGGCTAAAGGAGC+TGG | 0.467803 | 5_2:-66408577 | Msa0782890:CDS |
| TCCAACATAGAAGGTGCATC+TGG | 0.468392 | 5_2:+66411698 | None:intergenic |
| GGATCTATTGTTGATGTTGG+TGG | 0.469175 | 5_2:-66409284 | Msa0782890:CDS |
| CTCAAAATCTGTGTTTCAAA+TGG | 0.473479 | 5_2:-66408656 | Msa0782890:CDS |
| TGCAGTGGATATGTCATGAT+TGG | 0.478958 | 5_2:-66408792 | Msa0782890:intron |
| AACATGCAATTTGAAAGCCT+TGG | 0.486404 | 5_2:+66408551 | None:intergenic |
| CATCATACATTATAGTATAG+TGG | 0.490723 | 5_2:-66411950 | Msa0782890:five_prime_UTR |
| TAGCCAATAGACGCAATAAT+CGG | 0.495304 | 5_2:+66411675 | None:intergenic |
| TATGATTCTCTTCCTGCCAC+AGG | 0.496294 | 5_2:-66408733 | Msa0782890:CDS |
| CACTATACTATAATGTATGA+TGG | 0.500090 | 5_2:+66411951 | None:intergenic |
| ATCATATTATGTCATAGCTC+AGG | 0.508312 | 5_2:-66408628 | Msa0782890:CDS |
| GATTGAGAAAATGGAGAGGG+AGG | 0.515664 | 5_2:-66411909 | Msa0782890:CDS |
| GCTAAAGGAGCTGGATTCCA+AGG | 0.517739 | 5_2:-66408568 | Msa0782890:CDS |
| TGCTGGTATTTGTCGAGGGT+CGG | 0.518607 | 5_2:-66408406 | Msa0782890:three_prime_UTR |
| TCTATTGTTGATGTTGGTGG+TGG | 0.520573 | 5_2:-66409281 | Msa0782890:CDS |
| ATGGACAACATCATCCTACT+AGG | 0.523945 | 5_2:+66408372 | None:intergenic |
| TCCAGATGCACCTTCTATGT+TGG | 0.524280 | 5_2:-66411699 | Msa0782890:CDS |
| TGACAAAATATTTAGCAAGA+GGG | 0.538272 | 5_2:+66411582 | None:intergenic |
| ATTGAAATTATAGCCAAAGC+TGG | 0.539441 | 5_2:-66411779 | Msa0782890:CDS |
| TGTATGATTAGAAACAGTGT+TGG | 0.542247 | 5_2:-66408318 | Msa0782890:three_prime_UTR |
| AAAGTTGCTGGTATTTGTCG+AGG | 0.545837 | 5_2:-66408411 | Msa0782890:three_prime_UTR |
| TGCTTTCAACATGTATGTCA+TGG | 0.549160 | 5_2:-66408527 | Msa0782890:CDS |
| TTGACAAAATATTTAGCAAG+AGG | 0.550700 | 5_2:+66411581 | None:intergenic |
| TATGATTGAGAAAATGGAGA+GGG | 0.552370 | 5_2:-66411912 | Msa0782890:CDS |
| AATGAAGCACCATCTTATCC+AGG | 0.555315 | 5_2:-66409179 | Msa0782890:intron |
| CATAAGCATTGTAAAATGGA+AGG | 0.564270 | 5_2:+66409435 | None:intergenic |
| CTTGACAGATTCAATTCAAG+AGG | 0.570124 | 5_2:-66409462 | Msa0782890:CDS |
| AATTCCATAGCACAGATCAA+AGG | 0.585262 | 5_2:-66409397 | Msa0782890:CDS |
| AAGCAATGTTTGAAGATGAA+AGG | 0.586408 | 5_2:+66411744 | None:intergenic |
| AAGTTGCTGGTATTTGTCGA+GGG | 0.591255 | 5_2:-66408410 | Msa0782890:three_prime_UTR |
| TGCTCCATTCAACATCAAGA+TGG | 0.592118 | 5_2:-66411635 | Msa0782890:CDS |
| AAGATGGAGATTCTATTGAA+AGG | 0.592482 | 5_2:-66411619 | Msa0782890:CDS |
| ATGGTGCTTCATTAATGACA+TGG | 0.597662 | 5_2:+66409189 | None:intergenic |
| TGGTGCTTCATTAATGACAT+GGG | 0.597930 | 5_2:+66409190 | None:intergenic |
| GTAGGTGTGGAACATGTTGG+TGG | 0.603445 | 5_2:-66408962 | Msa0782890:intron |
| GGTGTAGGTGTGGAACATGT+TGG | 0.605628 | 5_2:-66408965 | Msa0782890:intron |
| CTTGAATTGAATCTGTCAAG+TGG | 0.609623 | 5_2:+66409465 | None:intergenic |
| AGAAGCACCTGATAGTTCCA+TGG | 0.614474 | 5_2:+66411844 | None:intergenic |
| ACAGATTCAATTCAAGAGGG+TGG | 0.615949 | 5_2:-66409458 | Msa0782890:CDS |
| ATATTATGTCATAGCTCAGG+TGG | 0.632364 | 5_2:-66408625 | Msa0782890:CDS |
| ATATGATTGAGAAAATGGAG+AGG | 0.644596 | 5_2:-66411913 | Msa0782890:CDS |
| TTGACAGATTCAATTCAAGA+GGG | 0.650903 | 5_2:-66409461 | Msa0782890:CDS |
| TGCCACAGGAAAAGTAATTG+CGG | 0.653779 | 5_2:-66408719 | Msa0782890:CDS |
| ACAAAGTCCTCAAAGACATG+TGG | 0.674324 | 5_2:-66411511 | Msa0782890:intron |
| GGTGCTTCATTAATGACATG+GGG | 0.689174 | 5_2:+66409191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTATATTTTTTTTTGT+CGG | + | chr5_2:66409128-66409147 | None:intergenic | 10.0% |
| !! | TTATTTCACATTATATATTA+AGG | - | chr5_2:66411111-66411130 | Msa0782890:intron | 10.0% |
| !! | AAAAATAATACATTAAATGT+TGG | - | chr5_2:66411226-66411245 | Msa0782890:intron | 10.0% |
| !! | AAAATAATACATTAAATGTT+GGG | - | chr5_2:66411227-66411246 | Msa0782890:intron | 10.0% |
| !! | TCAAAATAAATGAAATATAT+TGG | + | chr5_2:66411417-66411436 | None:intergenic | 10.0% |
| !!! | TCAATTTATTTTCTTTTAGT+AGG | - | chr5_2:66408790-66408809 | Msa0782890:CDS | 15.0% |
| !!! | CAATTTATTTTCTTTTAGTA+GGG | - | chr5_2:66408791-66408810 | Msa0782890:intron | 15.0% |
| !!! | GTATTATATTTTTTTTTGTC+GGG | + | chr5_2:66409127-66409146 | None:intergenic | 15.0% |
| !! | TATAATACTATTATAAGACT+TGG | - | chr5_2:66409139-66409158 | Msa0782890:intron | 15.0% |
| !! | AAAACAAAACAAAACAAAAA+AGG | + | chr5_2:66409282-66409301 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTTGTTTTGTTT+TGG | - | chr5_2:66409281-66409300 | Msa0782890:CDS | 15.0% |
| !!! | TAATGAGACTTTTTTTTTTA+AGG | + | chr5_2:66409463-66409482 | None:intergenic | 15.0% |
| !! | TAAGAAATTGCAAAAAAAAT+TGG | + | chr5_2:66409649-66409668 | None:intergenic | 15.0% |
| !! | TTATATAAACCTCTATAAAT+TGG | - | chr5_2:66409689-66409708 | Msa0782890:intron | 15.0% |
| !! | TATATAAACCTCTATAAATT+GGG | - | chr5_2:66409690-66409709 | Msa0782890:intron | 15.0% |
| !! | ATTATATAATAAAGTGTGTT+AGG | + | chr5_2:66410767-66410786 | None:intergenic | 15.0% |
| !! | ACACTTTATTATATAATTGT+AGG | - | chr5_2:66410770-66410789 | Msa0782890:intron | 15.0% |
| !!! | AAATTAATGGCTTTAATATT+AGG | + | chr5_2:66411042-66411061 | None:intergenic | 15.0% |
| !! | AAATAATACATTAAATGTTG+GGG | - | chr5_2:66411228-66411247 | Msa0782890:intron | 15.0% |
| !!! | TATTTTGTCAATAATCAAGA+TGG | - | chr5_2:66408691-66408710 | Msa0782890:CDS | 20.0% |
| !!! | TAGTTTTTTGAAATTAGCTA+AGG | + | chr5_2:66409195-66409214 | None:intergenic | 20.0% |
| !!! | TTTTCAAAATTAAGTTAGGT+TGG | + | chr5_2:66409222-66409241 | None:intergenic | 20.0% |
| !!! | GTCTTTTTCAAAATTAAGTT+AGG | + | chr5_2:66409226-66409245 | None:intergenic | 20.0% |
| !! | AAACAAAACAAAAAAGGAAA+AGG | + | chr5_2:66409276-66409295 | None:intergenic | 20.0% |
| !!! | CTTATTTAGTAATTTGTGTT+GGG | + | chr5_2:66409425-66409444 | None:intergenic | 20.0% |
| !!! | ACTTATTTAGTAATTTGTGT+TGG | + | chr5_2:66409426-66409445 | None:intergenic | 20.0% |
| !! | AAATTGCAAAAAAAATTGGT+CGG | + | chr5_2:66409645-66409664 | None:intergenic | 20.0% |
| !! | TAGAGAATAATTTCTATGAA+AGG | - | chr5_2:66409909-66409928 | Msa0782890:intron | 20.0% |
| !! | AGCATAAAACTTATTAACTA+AGG | + | chr5_2:66409953-66409972 | None:intergenic | 20.0% |
| !!! | TAGTTTGAGCTTTTAAAATA+TGG | + | chr5_2:66410330-66410349 | None:intergenic | 20.0% |
| !!! | AAACTTGATTTTGATATGTT+TGG | - | chr5_2:66410541-66410560 | Msa0782890:intron | 20.0% |
| !!! | TTCAATAAGATTTTCAACAA+GGG | - | chr5_2:66410886-66410905 | Msa0782890:intron | 20.0% |
| !!! | CACATTATATATTAAGGTTT+TGG | - | chr5_2:66411117-66411136 | Msa0782890:intron | 20.0% |
| !! | TATCTAACCAAACAAAAATT+AGG | - | chr5_2:66411150-66411169 | Msa0782890:intron | 20.0% |
| !! | TGTTATAAATAAAAAGTTGC+TGG | - | chr5_2:66411837-66411856 | Msa0782890:CDS | 20.0% |
| !!! | TTGATATTTTTCATCATACA+TGG | + | chr5_2:66411910-66411929 | None:intergenic | 20.0% |
| ! | ATAGCATATGATTGAGAAAA+TGG | - | chr5_2:66408342-66408361 | Msa0782890:three_prime_UTR | 25.0% |
| !!! | CATCTGGATTTTTTATAGAA+GGG | + | chr5_2:66408549-66408568 | None:intergenic | 25.0% |
| ! | TGACAAAATATTTAGCAAGA+GGG | + | chr5_2:66408681-66408700 | None:intergenic | 25.0% |
| ! | TTGACAAAATATTTAGCAAG+AGG | + | chr5_2:66408682-66408701 | None:intergenic | 25.0% |
| ! | TCATACTCTATGACATAAAT+GGG | + | chr5_2:66408818-66408837 | None:intergenic | 25.0% |
| ! | TTCATACTCTATGACATAAA+TGG | + | chr5_2:66408819-66408838 | None:intergenic | 25.0% |
| ! | ATGATACAATAAGTTAGGTT+GGG | + | chr5_2:66409251-66409270 | None:intergenic | 25.0% |
| ! | TATGATACAATAAGTTAGGT+TGG | + | chr5_2:66409252-66409271 | None:intergenic | 25.0% |
| ! | AGGATATGATACAATAAGTT+AGG | + | chr5_2:66409256-66409275 | None:intergenic | 25.0% |
| ! | CAAATATTAAAAACTCCTAG+CGG | - | chr5_2:66409591-66409610 | Msa0782890:intron | 25.0% |
| ! | AAAAATTGCCCAATTTATAG+AGG | + | chr5_2:66409701-66409720 | None:intergenic | 25.0% |
| !!! | TGTTGTAATTTTTTTTTGCC+CGG | - | chr5_2:66409774-66409793 | Msa0782890:intron | 25.0% |
| ! | TATGTCATATATGACTAACA+GGG | - | chr5_2:66410177-66410196 | Msa0782890:intron | 25.0% |
| ! | AGCAAAGTCAAAAATAAGTT+GGG | + | chr5_2:66410242-66410261 | None:intergenic | 25.0% |
| ! | AAGCAAAGTCAAAAATAAGT+TGG | + | chr5_2:66410243-66410262 | None:intergenic | 25.0% |
| !! | GCAAAGTTTTACTCTTTTTT+TGG | + | chr5_2:66410296-66410315 | None:intergenic | 25.0% |
| !! | AAGCTCAAACTAGTTTAATT+AGG | - | chr5_2:66410338-66410357 | Msa0782890:intron | 25.0% |
| ! | AACTTAAGATCATACTTTAG+TGG | - | chr5_2:66410373-66410392 | Msa0782890:intron | 25.0% |
| ! | AAAACAGTTAACGTATAGAT+AGG | - | chr5_2:66410492-66410511 | Msa0782890:intron | 25.0% |
| ! | TCAAAATCAAGTTTATGTCT+TGG | + | chr5_2:66410535-66410554 | None:intergenic | 25.0% |
| !!! | TTTTTAGCTTTTGACATGTT+TGG | - | chr5_2:66410581-66410600 | Msa0782890:intron | 25.0% |
| !!! | TTTTAGCTTTTGACATGTTT+GGG | - | chr5_2:66410582-66410601 | Msa0782890:intron | 25.0% |
| !! | ATTCCATAAGCATTGTAAAA+TGG | + | chr5_2:66410832-66410851 | None:intergenic | 25.0% |
| !! | GTTCAATAAGATTTTCAACA+AGG | - | chr5_2:66410885-66410904 | Msa0782890:intron | 25.0% |
| !!! | TATATATTAAGGTTTTGGAG+TGG | - | chr5_2:66411122-66411141 | Msa0782890:intron | 25.0% |
| ! | TAATGTCACCTTCATAAAAA+TGG | + | chr5_2:66411356-66411375 | None:intergenic | 25.0% |
| ! | GCATTCATAAAACATAAACT+TGG | + | chr5_2:66411451-66411470 | None:intergenic | 25.0% |
| !! | TTTATGTTTTATGAATGCAG+TGG | - | chr5_2:66411453-66411472 | Msa0782890:intron | 25.0% |
| ! | AAAGATACAATTACCAGAAA+AGG | + | chr5_2:66411787-66411806 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTAATTGTATCTT+TGG | - | chr5_2:66411786-66411805 | Msa0782890:CDS | 25.0% |
| ! | CTAATCATACATAAGACTAT+TGG | + | chr5_2:66411933-66411952 | None:intergenic | 25.0% |
| ATATGATTGAGAAAATGGAG+AGG | - | chr5_2:66408347-66408366 | Msa0782890:three_prime_UTR | 30.0% | |
| TATGATTGAGAAAATGGAGA+GGG | - | chr5_2:66408348-66408367 | Msa0782890:three_prime_UTR | 30.0% | |
| !!! | AAAGCTGATTTTAGAACCAT+TGG | + | chr5_2:66408448-66408467 | None:intergenic | 30.0% |
| !! | AATGGTTCTAAAATCAGCTT+TGG | - | chr5_2:66408447-66408466 | Msa0782890:three_prime_UTR | 30.0% |
| ATTGAAATTATAGCCAAAGC+TGG | - | chr5_2:66408481-66408500 | Msa0782890:three_prime_UTR | 30.0% | |
| AAGCAATGTTTGAAGATGAA+AGG | + | chr5_2:66408519-66408538 | None:intergenic | 30.0% | |
| !!! | GCATCTGGATTTTTTATAGA+AGG | + | chr5_2:66408550-66408569 | None:intergenic | 30.0% |
| AAGATGGAGATTCTATTGAA+AGG | - | chr5_2:66408641-66408660 | Msa0782890:CDS | 30.0% | |
| CATGAGAAATGAAGAAATCA+TGG | + | chr5_2:66408722-66408741 | None:intergenic | 30.0% | |
| CTATTAGATATGAGATGAGA+TGG | + | chr5_2:66408936-66408955 | None:intergenic | 30.0% | |
| ACGTGAATATAAATCGTAGA+TGG | - | chr5_2:66408969-66408988 | Msa0782890:intron | 30.0% | |
| ! | ACTATTATAAGACTTGGTCT+TGG | - | chr5_2:66409145-66409164 | Msa0782890:intron | 30.0% |
| !!! | GTTGTAATTTTTTTTTGCCC+GGG | - | chr5_2:66409775-66409794 | Msa0782890:intron | 30.0% |
| AAATAGATATATCCCGATTG+TGG | + | chr5_2:66409830-66409849 | None:intergenic | 30.0% | |
| AAACTCTTACTTTACATTGG+TGG | + | chr5_2:66409879-66409898 | None:intergenic | 30.0% | |
| CCAAAACTCTTACTTTACAT+TGG | + | chr5_2:66409882-66409901 | None:intergenic | 30.0% | |
| ! | CCAATGTAAAGTAAGAGTTT+TGG | - | chr5_2:66409879-66409898 | Msa0782890:intron | 30.0% |
| ! | ATACCTAATCATGTGAGTTT+TGG | - | chr5_2:66409987-66410006 | Msa0782890:intron | 30.0% |
| GAAAATCAACAACTTACTCA+CGG | + | chr5_2:66410094-66410113 | None:intergenic | 30.0% | |
| GTATGTCATATATGACTAAC+AGG | - | chr5_2:66410176-66410195 | Msa0782890:intron | 30.0% | |
| TCCTTAAGCAAACTAAAGTT+TGG | - | chr5_2:66410264-66410283 | Msa0782890:intron | 30.0% | |
| !! | ACCAAACTTTAGTTTGCTTA+AGG | + | chr5_2:66410268-66410287 | None:intergenic | 30.0% |
| TAAGATCATACTTTAGTGGT+AGG | - | chr5_2:66410377-66410396 | Msa0782890:intron | 30.0% | |
| !!! | TTTTTTGAAGGAGACATGTT+TGG | - | chr5_2:66410621-66410640 | Msa0782890:intron | 30.0% |
| !! | TTTTTGAAGGAGACATGTTT+GGG | - | chr5_2:66410622-66410641 | Msa0782890:intron | 30.0% |
| TTGACAGATTCAATTCAAGA+GGG | - | chr5_2:66410799-66410818 | Msa0782890:intron | 30.0% | |
| ! | CATAAGCATTGTAAAATGGA+AGG | + | chr5_2:66410828-66410847 | None:intergenic | 30.0% |
| ! | CTTCCATTTTACAATGCTTA+TGG | - | chr5_2:66410826-66410845 | Msa0782890:intron | 30.0% |
| AAAGTTCTTGAGACATATTC+AGG | - | chr5_2:66410940-66410959 | Msa0782890:intron | 30.0% | |
| ATGTGAAATAAAAACACACC+TGG | + | chr5_2:66411102-66411121 | None:intergenic | 30.0% | |
| ! | GCATTTGCCTAATTTTTGTT+TGG | + | chr5_2:66411160-66411179 | None:intergenic | 30.0% |
| ! | TGTTGGGGTAATATTCATTT+TGG | - | chr5_2:66411243-66411262 | Msa0782890:intron | 30.0% |
| ! | ATAAAAATGGCATCAGCTTT+TGG | + | chr5_2:66411343-66411362 | None:intergenic | 30.0% |
| AAATTTGAGTCAGGAACTAT+TGG | + | chr5_2:66411581-66411600 | None:intergenic | 30.0% | |
| AATAGTTCCTGACTCAAATT+TGG | - | chr5_2:66411580-66411599 | Msa0782890:CDS | 30.0% | |
| !! | CATTTGAAACACAGATTTTG+AGG | + | chr5_2:66411606-66411625 | None:intergenic | 30.0% |
| CTCAAAATCTGTGTTTCAAA+TGG | - | chr5_2:66411604-66411623 | Msa0782890:CDS | 30.0% | |
| ATCATATTATGTCATAGCTC+AGG | - | chr5_2:66411632-66411651 | Msa0782890:CDS | 30.0% | |
| !!! | CTTAACTTGTTTTCCTTTTC+TGG | - | chr5_2:66411771-66411790 | Msa0782890:CDS | 30.0% |
| TGTATGATTAGAAACAGTGT+TGG | - | chr5_2:66411942-66411961 | Msa0782890:five_prime_UTR | 30.0% | |
| !!! | AGAAGCTTTGTTTTTTGCCA+TGG | - | chr5_2:66408399-66408418 | Msa0782890:three_prime_UTR | 35.0% |
| !!! | TTTTTTGCCATGGAACTATC+AGG | - | chr5_2:66408409-66408428 | Msa0782890:three_prime_UTR | 35.0% |
| !! | CTAAAATCAGCTTTGGAACT+TGG | - | chr5_2:66408454-66408473 | Msa0782890:three_prime_UTR | 35.0% |
| AATAATCGGTCCAACATAGA+AGG | + | chr5_2:66408574-66408593 | None:intergenic | 35.0% | |
| TAGCCAATAGACGCAATAAT+CGG | + | chr5_2:66408588-66408607 | None:intergenic | 35.0% | |
| ATCTCCATCTTGATGTTGAA+TGG | + | chr5_2:66408632-66408651 | None:intergenic | 35.0% | |
| GATTCTATTGAAAGGCTCTA+TGG | - | chr5_2:66408649-66408668 | Msa0782890:CDS | 35.0% | |
| TATCATACCACATGTCTTTG+AGG | + | chr5_2:66408759-66408778 | None:intergenic | 35.0% | |
| ATGAGATGAGATGGTGTATT+AGG | + | chr5_2:66408927-66408946 | None:intergenic | 35.0% | |
| TAGACTAAGACTCTTGTCAT+AGG | + | chr5_2:66409329-66409348 | None:intergenic | 35.0% | |
| ACCCATAAAAAGTGATGAGA+GGG | - | chr5_2:66409544-66409563 | Msa0782890:intron | 35.0% | |
| !!! | TCCCTCTCATCACTTTTTAT+GGG | + | chr5_2:66409548-66409567 | None:intergenic | 35.0% |
| ATATTAAAAACTCCTAGCGG+CGG | - | chr5_2:66409594-66409613 | Msa0782890:intron | 35.0% | |
| CATCCAAAACTCACATGATT+AGG | + | chr5_2:66409993-66410012 | None:intergenic | 35.0% | |
| TTGGGCTAAACATAAGTCTT+TGG | + | chr5_2:66410224-66410243 | None:intergenic | 35.0% | |
| CTTGAATTGAATCTGTCAAG+TGG | + | chr5_2:66410798-66410817 | None:intergenic | 35.0% | |
| CTTGACAGATTCAATTCAAG+AGG | - | chr5_2:66410798-66410817 | Msa0782890:intron | 35.0% | |
| AATTCCATAGCACAGATCAA+AGG | - | chr5_2:66410863-66410882 | Msa0782890:intron | 35.0% | |
| !! | TGAGACATATTCAGGTTTTG+AGG | - | chr5_2:66410948-66410967 | Msa0782890:intron | 35.0% |
| !! | GAGACATATTCAGGTTTTGA+GGG | - | chr5_2:66410949-66410968 | Msa0782890:intron | 35.0% |
| CTTGGATCTATTGTTGATGT+TGG | - | chr5_2:66410973-66410992 | Msa0782890:intron | 35.0% | |
| ATGGGGCAAGTCAAAATTAA+TGG | + | chr5_2:66411055-66411074 | None:intergenic | 35.0% | |
| TGGTGCTTCATTAATGACAT+GGG | + | chr5_2:66411073-66411092 | None:intergenic | 35.0% | |
| ATGGTGCTTCATTAATGACA+TGG | + | chr5_2:66411074-66411093 | None:intergenic | 35.0% | |
| AAAAACACACCTGGATAAGA+TGG | + | chr5_2:66411093-66411112 | None:intergenic | 35.0% | |
| TTTGGTCACTGAATGTGTAA+CGG | - | chr5_2:66411261-66411280 | Msa0782890:intron | 35.0% | |
| !!! | AGCTGATGCCATTTTTATGA+AGG | - | chr5_2:66411345-66411364 | Msa0782890:intron | 35.0% |
| ATATTATGTCATAGCTCAGG+TGG | - | chr5_2:66411635-66411654 | Msa0782890:CDS | 35.0% | |
| AACATGCAATTTGAAAGCCT+TGG | + | chr5_2:66411712-66411731 | None:intergenic | 35.0% | |
| TGCTTTCAACATGTATGTCA+TGG | - | chr5_2:66411733-66411752 | Msa0782890:CDS | 35.0% | |
| GAAGATGAAAGGTGAGCATT+TGG | + | chr5_2:66408508-66408527 | None:intergenic | 40.0% | |
| GATGTTGAATGGAGCAAGTA+AGG | + | chr5_2:66408621-66408640 | None:intergenic | 40.0% | |
| TGCTCCATTCAACATCAAGA+TGG | - | chr5_2:66408625-66408644 | Msa0782890:CDS | 40.0% | |
| ACAAAGTCCTCAAAGACATG+TGG | - | chr5_2:66408749-66408768 | Msa0782890:CDS | 40.0% | |
| !!! | TTTTTTTGTCGGGTCATGTC+TGG | + | chr5_2:66409117-66409136 | None:intergenic | 40.0% |
| GACCCATAAAAAGTGATGAG+AGG | - | chr5_2:66409543-66409562 | Msa0782890:intron | 40.0% | |
| !!! | CTCCCTCTCATCACTTTTTA+TGG | + | chr5_2:66409549-66409568 | None:intergenic | 40.0% |
| AAAAAAAATTGGTCGGAGCC+CGG | + | chr5_2:66409638-66409657 | None:intergenic | 40.0% | |
| TTGATATGAGTACGTTGTCG+TGG | - | chr5_2:66410044-66410063 | Msa0782890:intron | 40.0% | |
| ACAGATTCAATTCAAGAGGG+TGG | - | chr5_2:66410802-66410821 | Msa0782890:intron | 40.0% | |
| TGAACCTTTGATCTGTGCTA+TGG | + | chr5_2:66410870-66410889 | None:intergenic | 40.0% | |
| !!! | TATTCAGGTTTTGAGGGTCT+TGG | - | chr5_2:66410955-66410974 | Msa0782890:intron | 40.0% |
| GGATCTATTGTTGATGTTGG+TGG | - | chr5_2:66410976-66410995 | Msa0782890:intron | 40.0% | |
| ! | TCTATTGTTGATGTTGGTGG+TGG | - | chr5_2:66410979-66410998 | Msa0782890:intron | 40.0% |
| GGTGCTTCATTAATGACATG+GGG | + | chr5_2:66411072-66411091 | None:intergenic | 40.0% | |
| ! | AATGAAGCACCATCTTATCC+AGG | - | chr5_2:66411081-66411100 | Msa0782890:intron | 40.0% |
| TGCAGTGGATATGTCATGAT+TGG | - | chr5_2:66411468-66411487 | Msa0782890:intron | 40.0% | |
| TGCCACAGGAAAAGTAATTG+CGG | - | chr5_2:66411541-66411560 | Msa0782890:CDS | 40.0% | |
| !! | AACCGCAATTACTTTTCCTG+TGG | + | chr5_2:66411546-66411565 | None:intergenic | 40.0% |
| ! | TTTGAGGCCAAATTTGAGTC+AGG | + | chr5_2:66411590-66411609 | None:intergenic | 40.0% |
| GAGAACAGAGAAAGAGTTTG+AGG | - | chr5_2:66411664-66411683 | Msa0782890:CDS | 40.0% | |
| ! | AGAGAAAGAGTTTGAGGCTT+TGG | - | chr5_2:66411670-66411689 | Msa0782890:CDS | 40.0% |
| AAAGTTGCTGGTATTTGTCG+AGG | - | chr5_2:66411849-66411868 | Msa0782890:CDS | 40.0% | |
| AAGTTGCTGGTATTTGTCGA+GGG | - | chr5_2:66411850-66411869 | Msa0782890:CDS | 40.0% | |
| ATGGACAACATCATCCTACT+AGG | + | chr5_2:66411891-66411910 | None:intergenic | 40.0% | |
| GATTGAGAAAATGGAGAGGG+AGG | - | chr5_2:66408351-66408370 | Msa0782890:three_prime_UTR | 45.0% | |
| !! | AGAAGCACCTGATAGTTCCA+TGG | + | chr5_2:66408419-66408438 | None:intergenic | 45.0% |
| TCCAGATGCACCTTCTATGT+TGG | - | chr5_2:66408561-66408580 | Msa0782890:CDS | 45.0% | |
| ! | TCCAACATAGAAGGTGCATC+TGG | + | chr5_2:66408565-66408584 | None:intergenic | 45.0% |
| GGACCGATTATTGCGTCTAT+TGG | - | chr5_2:66408582-66408601 | Msa0782890:CDS | 45.0% | |
| AAAAAAATTGGTCGGAGCCC+GGG | + | chr5_2:66409637-66409656 | None:intergenic | 45.0% | |
| CCAGGATTATTGTAAAGCCC+GGG | + | chr5_2:66409795-66409814 | None:intergenic | 45.0% | |
| GCCAGGATTATTGTAAAGCC+CGG | + | chr5_2:66409796-66409815 | None:intergenic | 45.0% | |
| ATCCCGATTGTGGAAAGTGA+CGG | + | chr5_2:66409820-66409839 | None:intergenic | 45.0% | |
| ACAACTTACTCACGGCAACT+CGG | + | chr5_2:66410086-66410105 | None:intergenic | 45.0% | |
| CACTGAATGTGTAACGGTGT+CGG | - | chr5_2:66411267-66411286 | Msa0782890:intron | 45.0% | |
| TATGATTCTCTTCCTGCCAC+AGG | - | chr5_2:66411527-66411546 | Msa0782890:CDS | 45.0% | |
| !! | GCAATTACTTTTCCTGTGGC+AGG | + | chr5_2:66411542-66411561 | None:intergenic | 45.0% |
| ! | GAGTTTGAGGCTTTGGCTAA+AGG | - | chr5_2:66411677-66411696 | Msa0782890:CDS | 45.0% |
| !!! | CGGTGTTGTTTTCACCTAGT+AGG | - | chr5_2:66411874-66411893 | Msa0782890:CDS | 45.0% |
| !!! | TTTTAATTTTATTTTTTTGA+AGG | - | chr5_2:66410609-66410628 | Msa0782890:intron | 5.0% |
| GTGAGCATTTGGACCAGCTT+TGG | + | chr5_2:66408497-66408516 | None:intergenic | 50.0% | |
| AAAAAATTGGTCGGAGCCCG+GGG | + | chr5_2:66409636-66409655 | None:intergenic | 50.0% | |
| CCCGGGCTTTACAATAATCC+TGG | - | chr5_2:66409792-66409811 | Msa0782890:intron | 50.0% | |
| ! | GCTCCGTCACTTTCCACAAT+CGG | - | chr5_2:66409814-66409833 | Msa0782890:intron | 50.0% |
| ! | CTCCGTCACTTTCCACAATC+GGG | - | chr5_2:66409815-66409834 | Msa0782890:intron | 50.0% |
| !! | GTTGATGTTGGTGGTGGAAC+TGG | - | chr5_2:66410985-66411004 | Msa0782890:intron | 50.0% |
| GGTGTAGGTGTGGAACATGT+TGG | - | chr5_2:66411295-66411314 | Msa0782890:intron | 50.0% | |
| GTAGGTGTGGAACATGTTGG+TGG | - | chr5_2:66411298-66411317 | Msa0782890:intron | 50.0% | |
| GCTAAAGGAGCTGGATTCCA+AGG | - | chr5_2:66411692-66411711 | Msa0782890:CDS | 50.0% | |
| TGCTGGTATTTGTCGAGGGT+CGG | - | chr5_2:66411854-66411873 | Msa0782890:CDS | 50.0% | |
| AGGTGCTTCTGCTGCTCCAA+TGG | - | chr5_2:66408429-66408448 | Msa0782890:three_prime_UTR | 55.0% | |
| AACTCCTAGCGGCGGTTCTA+TGG | - | chr5_2:66409602-66409621 | Msa0782890:intron | 55.0% | |
| ! | TTGTGGAAAGTGACGGAGCC+AGG | + | chr5_2:66409813-66409832 | None:intergenic | 55.0% |
| !! | TGTGTAACGGTGTCGGTGTC+TGG | - | chr5_2:66411274-66411293 | Msa0782890:intron | 55.0% |
| ! | GAGGCTTTGGCTAAAGGAGC+TGG | - | chr5_2:66411683-66411702 | Msa0782890:CDS | 55.0% |
| !! | ACGGTGTCGGTGTCTGGTGT+AGG | - | chr5_2:66411280-66411299 | Msa0782890:intron | 60.0% |
| ! | GTCGGTGTCTGGTGTAGGTG+TGG | - | chr5_2:66411285-66411304 | Msa0782890:intron | 60.0% |
| CTAGCGGCGGTTCTATGGCC+CGG | - | chr5_2:66409607-66409626 | Msa0782890:intron | 65.0% | |
| TAGCGGCGGTTCTATGGCCC+GGG | - | chr5_2:66409608-66409627 | Msa0782890:intron | 65.0% | |
| CGGGCCATAGAACCGCCGCT+AGG | + | chr5_2:66409609-66409628 | None:intergenic | 70.0% | |
| AGCGGCGGTTCTATGGCCCG+GGG | - | chr5_2:66409609-66409628 | Msa0782890:intron | 70.0% | |
| GTTCTATGGCCCGGGGACCC+CGG | - | chr5_2:66409616-66409635 | Msa0782890:intron | 70.0% | |
| TTCTATGGCCCGGGGACCCC+GGG | - | chr5_2:66409617-66409636 | Msa0782890:intron | 70.0% | |
| ! | TGGTCGGAGCCCGGGGTCCC+CGG | + | chr5_2:66409629-66409648 | None:intergenic | 80.0% |
| ! | GGTCGGAGCCCGGGGTCCCC+GGG | + | chr5_2:66409628-66409647 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 66408311 | 66411971 | 66408311 | ID=Msa0782890;Name=Msa0782890 |
| chr5_2 | mRNA | 66408311 | 66411971 | 66408311 | ID=Msa0782890-mRNA-1;Parent=Msa0782890;Name=Msa0782890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=38|1|1|1|1|1|4|196|366 |
| chr5_2 | exon | 66408311 | 66408809 | 66408311 | ID=Msa0782890-mRNA-1:exon:19990;Parent=Msa0782890-mRNA-1 |
| chr5_2 | exon | 66408916 | 66408980 | 66408916 | ID=Msa0782890-mRNA-1:exon:19989;Parent=Msa0782890-mRNA-1 |
| chr5_2 | exon | 66409180 | 66409490 | 66409180 | ID=Msa0782890-mRNA-1:exon:19988;Parent=Msa0782890-mRNA-1 |
| chr5_2 | exon | 66411512 | 66411971 | 66411512 | ID=Msa0782890-mRNA-1:exon:19987;Parent=Msa0782890-mRNA-1 |
| chr5_2 | five_prime_UTR | 66411934 | 66411971 | 66411934 | ID=Msa0782890-mRNA-1:five_prime_utr;Parent=Msa0782890-mRNA-1 |
| chr5_2 | CDS | 66411512 | 66411933 | 66411512 | ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1 |
| chr5_2 | CDS | 66409180 | 66409490 | 66409180 | ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1 |
| chr5_2 | CDS | 66408916 | 66408980 | 66408916 | ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1 |
| chr5_2 | CDS | 66408507 | 66408809 | 66408507 | ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1 |
| chr5_2 | three_prime_UTR | 66408311 | 66408506 | 66408311 | ID=Msa0782890-mRNA-1:three_prime_utr;Parent=Msa0782890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
