AlfalfaGEDB | Msa0782890

M. sativa cultivar zhongmu-4 / Msa0782890

KEGG: K13066|K21553
GO: -
PFAM: PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782890	sp\|Q00763\|COMT1_POPTM	66.759	361	119	1	6	366	6	365	0.0	523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782890	G7K511	98.087	366	6	1	1	366	1	365	0.0	744

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072940	Msa0782890	0.811198	7.893768e-51	-8.615850e-47
Msa0129290	Msa0782890	0.813418	2.584969e-51	-8.615850e-47
Msa0200090	Msa0782890	0.809319	2.006933e-50	-8.615850e-47
Msa0242710	Msa0782890	0.801552	8.532502e-49	-8.615850e-47
Msa0242720	Msa0782890	0.850066	2.158504e-60	-8.615850e-47
Msa0303650	Msa0782890	0.800473	1.417619e-48	-8.615850e-47
Msa0320160	Msa0782890	0.804039	2.615818e-49	-8.615850e-47
Msa0398770	Msa0782890	0.802288	6.022313e-49	-8.615850e-47
Msa0480540	Msa0782890	0.810201	1.296460e-50	-8.615850e-47
Msa0480550	Msa0782890	0.800936	1.140674e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782890	MtrunA17_Chr5g0448091	98.087	366	6	1	1	366	1	365	0.0	744
Msa0782890	MtrunA17_Chr3g0128011	68.376	351	110	1	14	364	68	417	0.0	525
Msa0782890	MtrunA17_Chr7g0276411	53.501	357	161	3	11	364	8	362	5.75e-139	399
Msa0782890	MtrunA17_Chr8g0367441	52.632	361	168	2	6	364	18	377	1.19e-137	396
Msa0782890	MtrunA17_Chr8g0367451	51.247	361	173	2	6	364	17	376	6.95e-132	382
Msa0782890	MtrunA17_Chr8g0367491	51.149	348	167	2	19	364	30	376	2.04e-131	380
Msa0782890	MtrunA17_Chr7g0276401	48.333	360	181	3	5	364	21	375	6.67e-125	364
Msa0782890	MtrunA17_Chr8g0367501	49.020	357	177	3	12	364	10	365	1.24e-118	350
Msa0782890	MtrunA17_Chr8g0367381	50.760	329	140	3	6	332	18	326	2.42e-117	343
Msa0782890	MtrunA17_Chr1g0200491	44.915	354	190	5	15	364	20	372	4.07e-103	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782890	AT5G54160.1	62.963	351	127	2	14	364	14	361	9.10e-171	480
Msa0782890	AT1G77520.1	46.631	371	186	5	1	364	16	381	2.95e-115	340
Msa0782890	AT1G33030.1	46.154	351	174	5	22	365	9	351	3.26e-111	328
Msa0782890	AT1G51990.1	44.068	354	194	4	15	365	11	363	7.56e-106	315
Msa0782890	AT1G51990.2	43.785	354	195	4	15	365	11	363	4.40e-105	313
Msa0782890	AT1G77530.1	47.568	370	182	6	2	364	17	381	1.19e-100	303
Msa0782890	AT1G63140.2	45.968	372	186	6	1	364	17	381	7.00e-98	296
Msa0782890	AT1G63140.4	45.968	372	186	6	1	364	37	401	1.26e-97	296
Msa0782890	AT5G53810.1	45.748	341	177	6	32	364	38	378	3.70e-95	288
Msa0782890	AT1G21130.1	44.944	356	185	9	16	364	22	373	7.29e-95	288

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Find 73 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATACAATTACCAGAAA+AGG	0.445894	5_2:+66408476	None:intergenic
AAAGTTCTTGAGACATATTC+AGG	0.350312	5_2:-66409320	Msa0782890:CDS
AAAGTTGCTGGTATTTGTCG+AGG	0.545837	5_2:-66408411	Msa0782890:three_prime_UTR
AAATTAATGGCTTTAATATT+AGG	0.210143	5_2:+66409221	None:intergenic
AAATTTGAGTCAGGAACTAT+TGG	0.365050	5_2:+66408682	None:intergenic
AACATGCAATTTGAAAGCCT+TGG	0.486404	5_2:+66408551	None:intergenic
AAGATGGAGATTCTATTGAA+AGG	0.592482	5_2:-66411619	Msa0782890:CDS
AAGCAATGTTTGAAGATGAA+AGG	0.586408	5_2:+66411744	None:intergenic
AAGTTGCTGGTATTTGTCGA+GGG	0.591255	5_2:-66408410	Msa0782890:three_prime_UTR
AATAATCGGTCCAACATAGA+AGG	0.446180	5_2:+66411689	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGATTGAGAAAATGGAG+AGG	-	chr5_2:66408347-66408366	Msa0782890:three_prime_UTR	30.0%
TATGATTGAGAAAATGGAGA+GGG	-	chr5_2:66408348-66408367	Msa0782890:three_prime_UTR	30.0%
ATTGAAATTATAGCCAAAGC+TGG	-	chr5_2:66408481-66408500	Msa0782890:three_prime_UTR	30.0%
AAGCAATGTTTGAAGATGAA+AGG	+	chr5_2:66408519-66408538	None:intergenic	30.0%
AAGATGGAGATTCTATTGAA+AGG	-	chr5_2:66408641-66408660	Msa0782890:CDS	30.0%
CATGAGAAATGAAGAAATCA+TGG	+	chr5_2:66408722-66408741	None:intergenic	30.0%
CTATTAGATATGAGATGAGA+TGG	+	chr5_2:66408936-66408955	None:intergenic	30.0%
ACGTGAATATAAATCGTAGA+TGG	-	chr5_2:66408969-66408988	Msa0782890:intron	30.0%
AAATAGATATATCCCGATTG+TGG	+	chr5_2:66409830-66409849	None:intergenic	30.0%
AAACTCTTACTTTACATTGG+TGG	+	chr5_2:66409879-66409898	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	66408311	66411971	66408311	ID=Msa0782890;Name=Msa0782890
chr5_2	mRNA	66408311	66411971	66408311	ID=Msa0782890-mRNA-1;Parent=Msa0782890;Name=Msa0782890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=38\|1\|1\|1\|1\|1\|4\|196\|366
chr5_2	exon	66408311	66408809	66408311	ID=Msa0782890-mRNA-1:exon:19990;Parent=Msa0782890-mRNA-1
chr5_2	exon	66408916	66408980	66408916	ID=Msa0782890-mRNA-1:exon:19989;Parent=Msa0782890-mRNA-1
chr5_2	exon	66409180	66409490	66409180	ID=Msa0782890-mRNA-1:exon:19988;Parent=Msa0782890-mRNA-1
chr5_2	exon	66411512	66411971	66411512	ID=Msa0782890-mRNA-1:exon:19987;Parent=Msa0782890-mRNA-1
chr5_2	five_prime_UTR	66411934	66411971	66411934	ID=Msa0782890-mRNA-1:five_prime_utr;Parent=Msa0782890-mRNA-1
chr5_2	CDS	66411512	66411933	66411512	ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1
chr5_2	CDS	66409180	66409490	66409180	ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1
chr5_2	CDS	66408916	66408980	66408916	ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1
chr5_2	CDS	66408507	66408809	66408507	ID=Msa0782890-mRNA-1:cds;Parent=Msa0782890-mRNA-1
chr5_2	three_prime_UTR	66408311	66408506	66408311	ID=Msa0782890-mRNA-1:three_prime_utr;Parent=Msa0782890-mRNA-1

Gene Sequence

>Msa0782890

ATGATTGAGAAAATGGAGAGGGAGGAAGCAAAGCAAGTAGTATCAGATGAAGAAGCTTTGTTTTTTGCCATGGAACTATCAGGTGCTTCTGCTGCTCCAATGGTTCTAAAATCAGCTTTGGAACTTGGCATCATTGAAATTATAGCCAAAGCTGGTCCAAATGCTCACCTTTCATCTTCAAACATTGCTTCTCAAATCCCTTCTATAAAAAATCCAGATGCACCTTCTATGTTGGACCGATTATTGCGTCTATTGGCTAGCTACAAAATCCTTACTTGCTCCATTCAACATCAAGATGGAGATTCTATTGAAAGGCTCTATGGTCTTCACCCTCTTGCTAAATATTTTGTCAATAATCAAGATGGTGTCTCCATGATTTCTTCATTTCTCATGCAACATGACAAAGTCCTCAAAGACATGTGGTACCACTTGACAGATTCAATTCAAGAGGGTGGCCTTCCATTTTACAATGCTTATGGAATGACATCTTTTGAATTCCATAGCACAGATCAAAGGTTCAATAAGATTTTCAACAAGGGCATGTCTGATTTCTCTAGTATCATAATGAACAAAGTTCTTGAGACATATTCAGGTTTTGAGGGTCTTGGATCTATTGTTGATGTTGGTGGTGGAACTGGAACTATTACTAACATGATCGTTTCTAAGTATCCTAATATTAAAGCCATTAATTTTGACTTGCCCCATGTCATTAATGAAGCACCATCTTATCCAGGTGTGGAACATGTTGGTGGAGACATGTTTGTGAGTGTTCCAAAAGCTGATGCCATTTTTATGAAGTGGATATGTCATGATTGGAATGATGAGCAATGCTTGAAATTTTTGAAGAATTGTTATGATTCTCTTCCTGCCACAGGAAAAGTAATTGCGGTTGAATGCATTATTCCAATAGTTCCTGACTCAAATTTGGCCTCAAAATCTGTGTTTCAAATGGATGCTATCATATTATGTCATAGCTCAGGTGGAAAAGAGAGAACAGAGAAAGAGTTTGAGGCTTTGGCTAAAGGAGCTGGATTCCAAGGCTTTCAAATTGCATGTTGTGCTTTCAACATGTATGTCATGGAATTTCTTAAGAATGCTTAA

Protein sequence

>Msa0782890

MIEKMEREEAKQVVSDEEALFFAMELSGASAAPMVLKSALELGIIEIIAKAGPNAHLSSSNIASQIPSIKNPDAPSMLDRLLRLLASYKILTCSIQHQDGDSIERLYGLHPLAKYFVNNQDGVSMISSFLMQHDKVLKDMWYHLTDSIQEGGLPFYNAYGMTSFEFHSTDQRFNKIFNKGMSDFSSIIMNKVLETYSGFEGLGSIVDVGGGTGTITNMIVSKYPNIKAINFDLPHVINEAPSYPGVEHVGGDMFVSVPKADAIFMKWICHDWNDEQCLKFLKNCYDSLPATGKVIAVECIIPIVPDSNLASKSVFQMDAIILCHSSGGKERTEKEFEALAKGAGFQGFQIACCAFNMYVMEFLKNA*