AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744550 MtrunA17_Chr5g0447941 97.756 312 7 0 1 312 1 312 0.0 630
Msa0744550 MtrunA17_Chr5g0447951 97.436 312 8 0 1 312 1 312 0.0 630
Msa0744550 MtrunA17_Chr5g0447961 97.436 312 8 0 1 312 1 312 0.0 630
Msa0744550 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 5.51e-163 456
Msa0744550 MtrunA17_Chr1g0173621 63.279 305 109 3 1 302 1 305 9.06e-139 395
Msa0744550 MtrunA17_Chr6g0479981 49.835 303 145 5 1 300 1 299 1.07e-96 288
Msa0744550 MtrunA17_Chr6g0480011 49.677 310 137 8 1 300 1 301 1.02e-95 286
Msa0744550 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 7.73e-93 278
Msa0744550 MtrunA17_Chr8g0368921 42.606 284 160 2 19 300 15 297 1.18e-74 232
Msa0744550 MtrunA17_Chr4g0018921 41.404 285 162 4 18 300 12 293 6.91e-73 227
Msa0744550 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 2.65e-71 223
Msa0744550 MtrunA17_Chr8g0368931 43.056 288 153 4 19 302 15 295 3.36e-70 220
Msa0744550 MtrunA17_Chr4g0009531 43.434 297 151 6 19 310 15 299 4.90e-67 212
Msa0744550 MtrunA17_Chr4g0009581 42.295 305 148 6 19 312 16 303 4.17e-65 207
Msa0744550 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 3.08e-60 190
Msa0744550 MtrunA17_Chr4g0036051 39.088 307 172 6 15 310 6 308 4.53e-59 191
Msa0744550 MtrunA17_Chr7g0243551 37.956 274 162 5 20 292 23 289 2.95e-57 186
Msa0744550 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 1.08e-51 168
Msa0744550 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 2.57e-50 164
Msa0744550 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 2.08e-44 151
Msa0744550 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 4.91e-26 99.8
Msa0744550 MtrunA17_Chr4g0036291 45.872 109 54 3 1 107 1 106 4.82e-24 94.4
Msa0744550 MtrunA17_Chr4g0036251 47.222 108 48 3 1 107 1 100 8.46e-24 93.6
Msa0744550 MtrunA17_Chr4g0036311 44.037 109 56 3 1 107 1 106 9.50e-24 93.6
Msa0744550 MtrunA17_Chr3g0095421 26.444 329 158 13 15 285 42 344 2.39e-17 81.6
Msa0744550 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 6.62e-17 75.1
Msa0744550 MtrunA17_Chr3g0127491 22.789 294 178 9 36 294 71 350 1.50e-14 73.6
Msa0744550 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 3.59e-12 66.2
Msa0744550 MtrunA17_Chr1g0204651 23.301 309 166 10 24 289 29 309 8.88e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744550 AT1G59960.1 53.896 308 131 6 1 300 1 305 3.70e-113 330
Msa0744550 AT1G59950.1 56.250 288 116 5 20 300 15 299 4.02e-106 312
Msa0744550 AT2G37790.1 43.706 286 150 4 19 300 15 293 3.71e-77 238
Msa0744550 AT2G37770.2 44.056 286 149 4 19 300 15 293 4.31e-77 238
Msa0744550 AT5G62420.1 43.310 284 155 4 20 300 14 294 4.41e-74 231
Msa0744550 AT2G37760.4 42.955 291 139 5 19 299 15 288 6.89e-73 226
Msa0744550 AT2G37760.3 42.955 291 139 5 19 299 15 288 6.89e-73 226
Msa0744550 AT5G01670.1 41.463 287 159 6 16 300 20 299 2.62e-72 226
Msa0744550 AT2G37760.5 43.403 288 136 5 19 296 15 285 6.33e-72 224
Msa0744550 AT2G37760.2 42.759 290 139 5 19 298 15 287 4.44e-71 223
Msa0744550 AT2G37760.1 42.759 290 139 5 19 298 15 287 4.44e-71 223
Msa0744550 AT3G53880.1 42.049 283 159 3 19 300 15 293 5.00e-70 220
Msa0744550 AT3G53880.2 42.143 280 151 4 19 294 15 287 1.20e-67 214
Msa0744550 AT2G21260.1 39.384 292 162 6 15 295 6 293 2.48e-67 213
Msa0744550 AT5G01670.2 37.942 311 157 7 19 300 23 326 2.23e-66 212
Msa0744550 AT2G21250.1 38.111 307 175 6 15 310 6 308 5.93e-66 209
Msa0744550 AT2G37760.6 42.510 247 121 4 62 298 6 241 2.17e-58 189
Msa0744550 AT2G37760.7 42.510 247 121 4 62 298 6 241 2.17e-58 189
Msa0744550 AT2G37770.1 47.208 197 94 3 19 212 15 204 6.80e-54 177
Msa0744550 AT2G21250.2 42.381 210 110 5 15 217 6 211 2.27e-48 162
Msa0744550 AT2G21260.2 35.455 220 129 5 87 295 8 225 1.83e-41 144
Msa0744550 AT1G06690.1 27.682 289 153 9 35 285 85 355 2.59e-20 90.5
Msa0744550 AT5G53580.1 25.175 286 157 11 44 290 80 347 1.41e-15 77.0
Msa0744550 AT1G60680.1 26.888 331 175 16 15 300 14 322 3.41e-15 75.5
Msa0744550 AT1G60690.1 24.062 320 174 12 25 300 27 321 9.51e-12 65.5
Msa0744550 AT1G60750.1 25.177 282 161 11 44 300 50 306 2.11e-11 64.3
Msa0744550 AT1G60710.1 25.077 323 167 14 25 300 27 321 9.77e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCTTCAATTGGACTATT+TGG 0.148242 5_1:+65390294 Msa0744550:CDS
AATCAAAGATACGCAAATTT+TGG 0.165725 5_1:-65390889 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 5_1:-65390721 None:intergenic
TGGACTTGTATTTGATTCAT+TGG 0.300948 5_1:+65390314 Msa0744550:CDS
ATTGGAAATGTAAACTTTCC+AGG 0.315067 5_1:-65390352 None:intergenic
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_1:-65389997 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 5_1:-65390749 None:intergenic
AAAATTTGCGTATCTTTGAT+TGG 0.369647 5_1:+65390891 Msa0744550:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_1:-65389951 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_1:+65390395 Msa0744550:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_1:+65390442 Msa0744550:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_1:-65390394 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_1:-65390370 None:intergenic
AGTCCAGGCTTGGTTGGTCC+AGG 0.384417 5_1:-65390971 None:intergenic
TTTGATACTGCTGCTGCATA+TGG 0.391786 5_1:+65390020 Msa0744550:CDS
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_1:+65390810 Msa0744550:CDS
TTCATGTAGGACTCTTCAAT+TGG 0.407231 5_1:+65390285 Msa0744550:intron
ATCCCTGGACCAACCAAGCC+TGG 0.412790 5_1:+65390968 Msa0744550:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.417383 5_1:+65390068 Msa0744550:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_1:+65390396 Msa0744550:CDS
TCTTTCCTTATCATAGCTCT+TGG 0.419142 5_1:-65390861 None:intergenic
TGTTCCCAAGAGCTATGATA+AGG 0.425757 5_1:+65390856 Msa0744550:CDS
CTTTCCTTATCATAGCTCTT+GGG 0.433848 5_1:-65390860 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 5_1:+65390742 Msa0744550:CDS
AAGCAGAATCGTTTGATCCC+TGG 0.463702 5_1:+65390953 Msa0744550:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 5_1:+65390723 Msa0744550:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 5_1:-65390722 None:intergenic
TTGTTGTTGTTGGGTTGGGA+AGG 0.479135 5_1:-65389838 None:intergenic
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_1:-65390422 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.494495 5_1:-65389884 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_1:+65390424 Msa0744550:CDS
TATGGTTCAGAACAAGCTCT+TGG 0.504539 5_1:+65390038 Msa0744550:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_1:+65390055 Msa0744550:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_1:-65389950 None:intergenic
AGTACTAATGTAAAATAACT+TGG 0.506920 5_1:-65391150 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_1:+65390388 Msa0744550:CDS
GTCCAGGCTTGGTTGGTCCA+GGG 0.519273 5_1:-65390970 None:intergenic
GAGGTCATTGAGTCCAGGCT+TGG 0.520820 5_1:-65390981 None:intergenic
AGCTACATAACTCACTCAAA+GGG 0.524563 5_1:+65389796 Msa0744550:five_prime_UTR
AAGCTACATAACTCACTCAA+AGG 0.526311 5_1:+65389795 Msa0744550:five_prime_UTR
CTTCAATTGACTAGATGTGT+TGG 0.531137 5_1:-65389901 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 5_1:+65389920 Msa0744550:CDS
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 5_1:+65390724 Msa0744550:CDS
TCATTGAGTCCAGGCTTGGT+TGG 0.552459 5_1:-65390977 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 5_1:+65389921 Msa0744550:CDS
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 5_1:+65390334 Msa0744550:CDS
TCATAGAGGTCATTGAGTCC+AGG 0.572409 5_1:-65390986 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.577970 5_1:-65389885 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5_1:+65390639 Msa0744550:intron
GCTGATCCCATTCCAACCAC+AGG 0.587516 5_1:-65389927 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_1:+65389987 Msa0744550:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_1:+65390405 Msa0744550:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_1:+65390824 Msa0744550:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 5_1:-65390523 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 5_1:+65390360 Msa0744550:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_1:-65389949 None:intergenic
CAATTGAAGATGCCTGTGGT+TGG 0.621459 5_1:+65389915 Msa0744550:CDS
CCAACAACAACAAAACAACA+TGG 0.622762 5_1:+65389848 Msa0744550:exon
AGAGCAGGAATAACAAGATG+AGG 0.624425 5_1:-65390149 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 5_1:+65390725 Msa0744550:CDS
TAGTGTTGAAATCCCAACAA+AGG 0.632514 5_1:+65389872 Msa0744550:CDS
TTTCCTCAACGGGGAAAATG+CGG 0.632608 5_1:-65390711 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_1:+65390779 Msa0744550:CDS
TTCAGAACAAGCTCTTGGAG+AGG 0.639658 5_1:+65390043 Msa0744550:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 5_1:-65390337 None:intergenic
AAAGCTCTTCTCTAGTGACA+AGG 0.667555 5_1:-65390091 None:intergenic
ATTGACTGCAGGAAGAACAG+TGG 0.718468 5_1:-65390512 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_1:+65390408 Msa0744550:CDS
GCTTGCACCTTTCCTCAACG+GGG 0.723595 5_1:-65390720 None:intergenic
TAGTCAATTGAAGATGCCTG+TGG 0.737799 5_1:+65389911 Msa0744550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAATATTACATTCATT+TGG + chr5_1:65390209-65390228 Msa0744550:intron 15.0%
!! CTAAAAATTAATCAAAACTT+AGG - chr5_1:65390558-65390577 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG - chr5_1:65391048-65391067 None:intergenic 15.0%
!! ATATCAATATTACATTCATT+TGG + chr5_1:65390209-65390228 Msa0744550:intron 15.0%
!! CTAAAAATTAATCAAAACTT+AGG - chr5_1:65390558-65390577 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG - chr5_1:65391048-65391067 None:intergenic 15.0%
!!! TTGATTTGTTAATTTCATGT+AGG + chr5_1:65390272-65390291 Msa0744550:intron 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG - chr5_1:65391003-65391022 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG - chr5_1:65391153-65391172 None:intergenic 20.0%
!!! TTGATTTGTTAATTTCATGT+AGG + chr5_1:65390272-65390291 Msa0744550:intron 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG - chr5_1:65391003-65391022 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG - chr5_1:65391153-65391172 None:intergenic 20.0%
!!! TTTTTGTTACTTCCAAACTT+TGG + chr5_1:65390111-65390130 Msa0744550:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG + chr5_1:65390112-65390131 Msa0744550:CDS 25.0%
! TCAATATTACATTCATTTGG+AGG + chr5_1:65390212-65390231 Msa0744550:intron 25.0%
! CAATGAACTCATAAATGTAT+AGG + chr5_1:65390619-65390638 Msa0744550:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG - chr5_1:65390892-65390911 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG + chr5_1:65390891-65390910 Msa0744550:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG - chr5_1:65391035-65391054 None:intergenic 25.0%
!!! TTTTTGTTACTTCCAAACTT+TGG + chr5_1:65390111-65390130 Msa0744550:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG + chr5_1:65390112-65390131 Msa0744550:CDS 25.0%
! TCAATATTACATTCATTTGG+AGG + chr5_1:65390212-65390231 Msa0744550:intron 25.0%
! CAATGAACTCATAAATGTAT+AGG + chr5_1:65390619-65390638 Msa0744550:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG - chr5_1:65390892-65390911 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG + chr5_1:65390891-65390910 Msa0744550:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG - chr5_1:65391035-65391054 None:intergenic 25.0%
!!! CATGTTGTTTTGTTGTTGTT+GGG - chr5_1:65389850-65389869 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG + chr5_1:65390314-65390333 Msa0744550:CDS 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_1:65390355-65390374 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_1:65390360-65390379 Msa0744550:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_1:65390396-65390415 Msa0744550:CDS 30.0%
TGAACTCATAAATGTATAGG+TGG + chr5_1:65390622-65390641 Msa0744550:intron 30.0%
TCATTCTCCATAACTTCATT+TGG - chr5_1:65390752-65390771 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_1:65390810-65390829 Msa0744550:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG + chr5_1:65391073-65391092 Msa0744550:three_prime_UTR 30.0%
CAAACTCGTTTCAAAAACAA+GGG - chr5_1:65391103-65391122 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG - chr5_1:65391104-65391123 None:intergenic 30.0%
!!! CATGTTGTTTTGTTGTTGTT+GGG - chr5_1:65389850-65389869 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG + chr5_1:65390314-65390333 Msa0744550:CDS 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_1:65390355-65390374 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_1:65390360-65390379 Msa0744550:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_1:65390396-65390415 Msa0744550:CDS 30.0%
TGAACTCATAAATGTATAGG+TGG + chr5_1:65390622-65390641 Msa0744550:intron 30.0%
TCATTCTCCATAACTTCATT+TGG - chr5_1:65390752-65390771 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_1:65390810-65390829 Msa0744550:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG + chr5_1:65391073-65391092 Msa0744550:three_prime_UTR 30.0%
CAAACTCGTTTCAAAAACAA+GGG - chr5_1:65391103-65391122 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG - chr5_1:65391104-65391123 None:intergenic 30.0%
AAGCTACATAACTCACTCAA+AGG + chr5_1:65389795-65389814 Msa0744550:five_prime_UTR 35.0%
AGCTACATAACTCACTCAAA+GGG + chr5_1:65389796-65389815 Msa0744550:five_prime_UTR 35.0%
!!! TGTTTTGTTGTTGTTGGGTT+GGG - chr5_1:65389845-65389864 None:intergenic 35.0%
!!! TTGTTTTGTTGTTGTTGGGT+TGG - chr5_1:65389846-65389865 None:intergenic 35.0%
!!! CCATGTTGTTTTGTTGTTGT+TGG - chr5_1:65389851-65389870 None:intergenic 35.0%
CCAACAACAACAAAACAACA+TGG + chr5_1:65389848-65389867 Msa0744550:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_1:65389872-65389891 Msa0744550:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_1:65389887-65389906 None:intergenic 35.0%
CTTCAATTGACTAGATGTGT+TGG - chr5_1:65389904-65389923 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_1:65389952-65389971 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_1:65389953-65389972 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_1:65389954-65389973 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_1:65389987-65390006 Msa0744550:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_1:65390000-65390019 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_1:65390068-65390087 Msa0744550:CDS 35.0%
! ATTTTCAGTGACCCAAAGTT+TGG - chr5_1:65390126-65390145 None:intergenic 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr5_1:65390167-65390186 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG + chr5_1:65390285-65390304 Msa0744550:intron 35.0%
GACTCTTCAATTGGACTATT+TGG + chr5_1:65390294-65390313 Msa0744550:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_1:65390388-65390407 Msa0744550:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_1:65390397-65390416 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_1:65390395-65390414 Msa0744550:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr5_1:65390526-65390545 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_1:65390824-65390843 Msa0744550:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG - chr5_1:65390863-65390882 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG - chr5_1:65390864-65390883 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG + chr5_1:65391072-65391091 Msa0744550:three_prime_UTR 35.0%
AAGCTACATAACTCACTCAA+AGG + chr5_1:65389795-65389814 Msa0744550:five_prime_UTR 35.0%
AGCTACATAACTCACTCAAA+GGG + chr5_1:65389796-65389815 Msa0744550:five_prime_UTR 35.0%
!!! TGTTTTGTTGTTGTTGGGTT+GGG - chr5_1:65389845-65389864 None:intergenic 35.0%
!!! TTGTTTTGTTGTTGTTGGGT+TGG - chr5_1:65389846-65389865 None:intergenic 35.0%
!!! CCATGTTGTTTTGTTGTTGT+TGG - chr5_1:65389851-65389870 None:intergenic 35.0%
CCAACAACAACAAAACAACA+TGG + chr5_1:65389848-65389867 Msa0744550:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_1:65389872-65389891 Msa0744550:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_1:65389887-65389906 None:intergenic 35.0%
CTTCAATTGACTAGATGTGT+TGG - chr5_1:65389904-65389923 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_1:65389952-65389971 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_1:65389953-65389972 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_1:65389954-65389973 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_1:65389987-65390006 Msa0744550:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_1:65390000-65390019 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_1:65390068-65390087 Msa0744550:CDS 35.0%
! ATTTTCAGTGACCCAAAGTT+TGG - chr5_1:65390126-65390145 None:intergenic 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr5_1:65390167-65390186 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG + chr5_1:65390285-65390304 Msa0744550:intron 35.0%
GACTCTTCAATTGGACTATT+TGG + chr5_1:65390294-65390313 Msa0744550:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_1:65390388-65390407 Msa0744550:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_1:65390397-65390416 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_1:65390395-65390414 Msa0744550:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr5_1:65390526-65390545 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_1:65390824-65390843 Msa0744550:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG - chr5_1:65390863-65390882 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG - chr5_1:65390864-65390883 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG + chr5_1:65391072-65391091 Msa0744550:three_prime_UTR 35.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_1:65389888-65389907 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_1:65389911-65389930 Msa0744550:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + chr5_1:65390020-65390039 Msa0744550:CDS 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_1:65390038-65390057 Msa0744550:CDS 40.0%
AAAGCTCTTCTCTAGTGACA+AGG - chr5_1:65390094-65390113 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_1:65390152-65390171 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_1:65390373-65390392 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_1:65390425-65390444 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_1:65390424-65390443 Msa0744550:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_1:65390442-65390461 Msa0744550:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_1:65390779-65390798 Msa0744550:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + chr5_1:65390856-65390875 Msa0744550:CDS 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_1:65389888-65389907 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_1:65389911-65389930 Msa0744550:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + chr5_1:65390020-65390039 Msa0744550:CDS 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_1:65390038-65390057 Msa0744550:CDS 40.0%
AAAGCTCTTCTCTAGTGACA+AGG - chr5_1:65390094-65390113 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_1:65390152-65390171 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_1:65390373-65390392 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_1:65390425-65390444 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_1:65390424-65390443 Msa0744550:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_1:65390442-65390461 Msa0744550:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_1:65390779-65390798 Msa0744550:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + chr5_1:65390856-65390875 Msa0744550:CDS 40.0%
!! TTGTTGTTGTTGGGTTGGGA+AGG - chr5_1:65389841-65389860 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_1:65389915-65389934 Msa0744550:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_1:65389921-65389940 Msa0744550:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr5_1:65390043-65390062 Msa0744550:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_1:65390055-65390074 Msa0744550:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr5_1:65390340-65390359 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_1:65390405-65390424 Msa0744550:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr5_1:65390515-65390534 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr5_1:65390655-65390674 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr5_1:65390677-65390696 Msa0744550:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr5_1:65390714-65390733 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr5_1:65390742-65390761 Msa0744550:CDS 45.0%
AAGCAGAATCGTTTGATCCC+TGG + chr5_1:65390953-65390972 Msa0744550:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG - chr5_1:65390989-65391008 None:intergenic 45.0%
!! TTGTTGTTGTTGGGTTGGGA+AGG - chr5_1:65389841-65389860 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_1:65389915-65389934 Msa0744550:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_1:65389921-65389940 Msa0744550:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr5_1:65390043-65390062 Msa0744550:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_1:65390055-65390074 Msa0744550:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr5_1:65390340-65390359 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_1:65390405-65390424 Msa0744550:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr5_1:65390515-65390534 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr5_1:65390655-65390674 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr5_1:65390677-65390696 Msa0744550:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr5_1:65390714-65390733 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr5_1:65390742-65390761 Msa0744550:CDS 45.0%
AAGCAGAATCGTTTGATCCC+TGG + chr5_1:65390953-65390972 Msa0744550:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG - chr5_1:65390989-65391008 None:intergenic 45.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_1:65389920-65389939 Msa0744550:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_1:65390408-65390427 Msa0744550:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_1:65390639-65390658 Msa0744550:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr5_1:65390708-65390727 Msa0744550:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr5_1:65390713-65390732 Msa0744550:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr5_1:65390724-65390743 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_1:65390725-65390744 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr5_1:65390724-65390743 Msa0744550:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr5_1:65390725-65390744 Msa0744550:CDS 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG - chr5_1:65390980-65390999 None:intergenic 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_1:65389920-65389939 Msa0744550:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_1:65390408-65390427 Msa0744550:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_1:65390639-65390658 Msa0744550:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr5_1:65390708-65390727 Msa0744550:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr5_1:65390713-65390732 Msa0744550:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr5_1:65390724-65390743 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_1:65390725-65390744 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr5_1:65390724-65390743 Msa0744550:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr5_1:65390725-65390744 Msa0744550:CDS 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG - chr5_1:65390980-65390999 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_1:65389930-65389949 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr5_1:65390334-65390353 Msa0744550:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr5_1:65390723-65390742 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr5_1:65390723-65390742 Msa0744550:CDS 55.0%
GAGGTCATTGAGTCCAGGCT+TGG - chr5_1:65390984-65391003 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_1:65389930-65389949 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr5_1:65390334-65390353 Msa0744550:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr5_1:65390723-65390742 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr5_1:65390723-65390742 Msa0744550:CDS 55.0%
GAGGTCATTGAGTCCAGGCT+TGG - chr5_1:65390984-65391003 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+TGG + chr5_1:65390968-65390987 Msa0744550:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG - chr5_1:65390973-65390992 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG - chr5_1:65390974-65390993 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+TGG + chr5_1:65390968-65390987 Msa0744550:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG - chr5_1:65390973-65390992 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG - chr5_1:65390974-65390993 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 65389794 65391179 65389794 ID=Msa0744550;Name=Msa0744550
chr5_1 mRNA 65389794 65391179 65389794 ID=Msa0744550-mRNA-1;Parent=Msa0744550;Name=Msa0744550-mRNA-1;_AED=0.26;_eAED=0.26;_QI=73|1|1|1|1|1|3|164|312
chr5_1 exon 65389794 65390186 65389794 ID=Msa0744550-mRNA-1:exon:19437;Parent=Msa0744550-mRNA-1
chr5_1 exon 65390294 65390537 65390294 ID=Msa0744550-mRNA-1:exon:19438;Parent=Msa0744550-mRNA-1
chr5_1 exon 65390641 65391179 65390641 ID=Msa0744550-mRNA-1:exon:19439;Parent=Msa0744550-mRNA-1
chr5_1 five_prime_UTR 65389794 65389866 65389794 ID=Msa0744550-mRNA-1:five_prime_utr;Parent=Msa0744550-mRNA-1
chr5_1 CDS 65389867 65390186 65389867 ID=Msa0744550-mRNA-1:cds;Parent=Msa0744550-mRNA-1
chr5_1 CDS 65390294 65390537 65390294 ID=Msa0744550-mRNA-1:cds;Parent=Msa0744550-mRNA-1
chr5_1 CDS 65390641 65391015 65390641 ID=Msa0744550-mRNA-1:cds;Parent=Msa0744550-mRNA-1
chr5_1 three_prime_UTR 65391016 65391179 65391016 ID=Msa0744550-mRNA-1:three_prime_utr;Parent=Msa0744550-mRNA-1
Gene Sequence

>Msa0744550

ATGGATAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACATCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCATATGGTTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGCCTTGTCACTAGAGAAGAGCTTTTTGTTACTTCCAAACTTTGGGTCACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAATTGGACTATTTGGACTTGTATTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTCGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAAAGAATGAACCAAAATTTGCGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATTGATCAAATTAAGCAGAATCGTTTGATCCCTGGACCAACCAAGCCTGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0744550

MDSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*