AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480540 MtrunA17_Chr5g0447941 97.756 312 7 0 1 312 1 312 0.0 630
Msa0480540 MtrunA17_Chr5g0447951 97.436 312 8 0 1 312 1 312 0.0 630
Msa0480540 MtrunA17_Chr5g0447961 97.436 312 8 0 1 312 1 312 0.0 630
Msa0480540 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 5.51e-163 456
Msa0480540 MtrunA17_Chr1g0173621 63.279 305 109 3 1 302 1 305 9.06e-139 395
Msa0480540 MtrunA17_Chr6g0479981 49.835 303 145 5 1 300 1 299 1.07e-96 288
Msa0480540 MtrunA17_Chr6g0480011 49.677 310 137 8 1 300 1 301 1.02e-95 286
Msa0480540 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 7.73e-93 278
Msa0480540 MtrunA17_Chr8g0368921 42.606 284 160 2 19 300 15 297 1.18e-74 232
Msa0480540 MtrunA17_Chr4g0018921 41.404 285 162 4 18 300 12 293 6.91e-73 227
Msa0480540 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 2.65e-71 223
Msa0480540 MtrunA17_Chr8g0368931 43.056 288 153 4 19 302 15 295 3.36e-70 220
Msa0480540 MtrunA17_Chr4g0009531 43.434 297 151 6 19 310 15 299 4.90e-67 212
Msa0480540 MtrunA17_Chr4g0009581 42.295 305 148 6 19 312 16 303 4.17e-65 207
Msa0480540 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 3.08e-60 190
Msa0480540 MtrunA17_Chr4g0036051 39.088 307 172 6 15 310 6 308 4.53e-59 191
Msa0480540 MtrunA17_Chr7g0243551 37.956 274 162 5 20 292 23 289 2.95e-57 186
Msa0480540 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 1.08e-51 168
Msa0480540 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 2.57e-50 164
Msa0480540 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 2.08e-44 151
Msa0480540 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 4.91e-26 99.8
Msa0480540 MtrunA17_Chr4g0036291 45.872 109 54 3 1 107 1 106 4.82e-24 94.4
Msa0480540 MtrunA17_Chr4g0036251 47.222 108 48 3 1 107 1 100 8.46e-24 93.6
Msa0480540 MtrunA17_Chr4g0036311 44.037 109 56 3 1 107 1 106 9.50e-24 93.6
Msa0480540 MtrunA17_Chr3g0095421 26.444 329 158 13 15 285 42 344 2.39e-17 81.6
Msa0480540 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 6.62e-17 75.1
Msa0480540 MtrunA17_Chr3g0127491 22.789 294 178 9 36 294 71 350 1.50e-14 73.6
Msa0480540 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 3.59e-12 66.2
Msa0480540 MtrunA17_Chr1g0204651 23.301 309 166 10 24 289 29 309 8.88e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480540 AT1G59960.1 53.896 308 131 6 1 300 1 305 3.70e-113 330
Msa0480540 AT1G59950.1 56.250 288 116 5 20 300 15 299 4.02e-106 312
Msa0480540 AT2G37790.1 43.706 286 150 4 19 300 15 293 3.71e-77 238
Msa0480540 AT2G37770.2 44.056 286 149 4 19 300 15 293 4.31e-77 238
Msa0480540 AT5G62420.1 43.310 284 155 4 20 300 14 294 4.41e-74 231
Msa0480540 AT2G37760.4 42.955 291 139 5 19 299 15 288 6.89e-73 226
Msa0480540 AT2G37760.3 42.955 291 139 5 19 299 15 288 6.89e-73 226
Msa0480540 AT5G01670.1 41.463 287 159 6 16 300 20 299 2.62e-72 226
Msa0480540 AT2G37760.5 43.403 288 136 5 19 296 15 285 6.33e-72 224
Msa0480540 AT2G37760.2 42.759 290 139 5 19 298 15 287 4.44e-71 223
Msa0480540 AT2G37760.1 42.759 290 139 5 19 298 15 287 4.44e-71 223
Msa0480540 AT3G53880.1 42.049 283 159 3 19 300 15 293 5.00e-70 220
Msa0480540 AT3G53880.2 42.143 280 151 4 19 294 15 287 1.20e-67 214
Msa0480540 AT2G21260.1 39.384 292 162 6 15 295 6 293 2.48e-67 213
Msa0480540 AT5G01670.2 37.942 311 157 7 19 300 23 326 2.23e-66 212
Msa0480540 AT2G21250.1 38.111 307 175 6 15 310 6 308 5.93e-66 209
Msa0480540 AT2G37760.6 42.510 247 121 4 62 298 6 241 2.17e-58 189
Msa0480540 AT2G37760.7 42.510 247 121 4 62 298 6 241 2.17e-58 189
Msa0480540 AT2G37770.1 47.208 197 94 3 19 212 15 204 6.80e-54 177
Msa0480540 AT2G21250.2 42.381 210 110 5 15 217 6 211 2.27e-48 162
Msa0480540 AT2G21260.2 35.455 220 129 5 87 295 8 225 1.83e-41 144
Msa0480540 AT1G06690.1 27.682 289 153 9 35 285 85 355 2.59e-20 90.5
Msa0480540 AT5G53580.1 25.175 286 157 11 44 290 80 347 1.41e-15 77.0
Msa0480540 AT1G60680.1 26.888 331 175 16 15 300 14 322 3.41e-15 75.5
Msa0480540 AT1G60690.1 24.062 320 174 12 25 300 27 321 9.51e-12 65.5
Msa0480540 AT1G60750.1 25.177 282 161 11 44 300 50 306 2.11e-11 64.3
Msa0480540 AT1G60710.1 25.077 323 167 14 25 300 27 321 9.77e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCTTCAATTGGACTATT+TGG 0.148242 3_3:+85870588 Msa0480540:CDS
AATCAAAGATACGCAAATTT+TGG 0.165725 3_3:-85871183 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 3_3:-85871015 None:intergenic
TGGACTTGTATTTGATTCAT+TGG 0.300948 3_3:+85870608 Msa0480540:CDS
ATTGGAAATGTAAACTTTCC+AGG 0.315067 3_3:-85870646 None:intergenic
GTGTCTATAACCTTGTTTGA+TGG 0.333209 3_3:-85870291 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 3_3:-85871043 None:intergenic
AAAATTTGCGTATCTTTGAT+TGG 0.369647 3_3:+85871185 Msa0480540:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 3_3:-85870245 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 3_3:+85870689 Msa0480540:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 3_3:+85870736 Msa0480540:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 3_3:-85870688 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 3_3:-85870664 None:intergenic
AGTCCAGGCTTGGTTGGTCC+AGG 0.384417 3_3:-85871265 None:intergenic
TTTGATACTGCTGCTGCATA+TGG 0.391786 3_3:+85870314 Msa0480540:CDS
TTGCACAAATTTCTCTAAGA+TGG 0.398611 3_3:+85871104 Msa0480540:CDS
TTCATGTAGGACTCTTCAAT+TGG 0.407231 3_3:+85870579 Msa0480540:intron
ATCCCTGGACCAACCAAGCC+TGG 0.412790 3_3:+85871262 Msa0480540:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.417383 3_3:+85870362 Msa0480540:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 3_3:+85870690 Msa0480540:CDS
TCTTTCCTTATCATAGCTCT+TGG 0.419142 3_3:-85871155 None:intergenic
TGTTCCCAAGAGCTATGATA+AGG 0.425757 3_3:+85871150 Msa0480540:CDS
CTTTCCTTATCATAGCTCTT+GGG 0.433848 3_3:-85871154 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 3_3:+85871036 Msa0480540:CDS
AAGCAGAATCGTTTGATCCC+TGG 0.463702 3_3:+85871247 Msa0480540:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 3_3:+85871017 Msa0480540:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 3_3:-85871016 None:intergenic
TTGTTGTTGTTGGGTTGGGA+AGG 0.479135 3_3:-85870132 None:intergenic
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 3_3:-85870716 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.494495 3_3:-85870178 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 3_3:+85870718 Msa0480540:CDS
TATGGTTCAGAACAAGCTCT+TGG 0.504539 3_3:+85870332 Msa0480540:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 3_3:+85870349 Msa0480540:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 3_3:-85870244 None:intergenic
AGTACTAATGTAAAATAACT+TGG 0.506920 3_3:-85871444 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 3_3:+85870682 Msa0480540:CDS
GTCCAGGCTTGGTTGGTCCA+GGG 0.519273 3_3:-85871264 None:intergenic
GAGGTCATTGAGTCCAGGCT+TGG 0.520820 3_3:-85871275 None:intergenic
AGCTACATAACTCACTCAAA+GGG 0.524563 3_3:+85870090 Msa0480540:five_prime_UTR
AAGCTACATAACTCACTCAA+AGG 0.526311 3_3:+85870089 Msa0480540:five_prime_UTR
CTTCAATTGACTAGATGTGT+TGG 0.531137 3_3:-85870195 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 3_3:+85870214 Msa0480540:CDS
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 3_3:+85871018 Msa0480540:CDS
TCATTGAGTCCAGGCTTGGT+TGG 0.552459 3_3:-85871271 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 3_3:+85870215 Msa0480540:CDS
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 3_3:+85870628 Msa0480540:CDS
TCATAGAGGTCATTGAGTCC+AGG 0.572409 3_3:-85871280 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.577970 3_3:-85870179 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 3_3:+85870933 Msa0480540:intron
GCTGATCCCATTCCAACCAC+AGG 0.587516 3_3:-85870221 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 3_3:+85870281 Msa0480540:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 3_3:+85870699 Msa0480540:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 3_3:+85871118 Msa0480540:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 3_3:-85870817 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 3_3:+85870654 Msa0480540:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 3_3:-85870243 None:intergenic
CAATTGAAGATGCCTGTGGT+TGG 0.621459 3_3:+85870209 Msa0480540:CDS
CCAACAACAACAAAACAACA+TGG 0.622762 3_3:+85870142 Msa0480540:exon
AGAGCAGGAATAACAAGATG+AGG 0.624425 3_3:-85870443 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 3_3:+85871019 Msa0480540:CDS
TAGTGTTGAAATCCCAACAA+AGG 0.632514 3_3:+85870166 Msa0480540:CDS
TTTCCTCAACGGGGAAAATG+CGG 0.632608 3_3:-85871005 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 3_3:+85871073 Msa0480540:CDS
TTCAGAACAAGCTCTTGGAG+AGG 0.639658 3_3:+85870337 Msa0480540:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 3_3:-85870631 None:intergenic
AAAGCTCTTCTCTAGTGACA+AGG 0.667555 3_3:-85870385 None:intergenic
ATTGACTGCAGGAAGAACAG+TGG 0.718468 3_3:-85870806 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 3_3:+85870702 Msa0480540:CDS
GCTTGCACCTTTCCTCAACG+GGG 0.723595 3_3:-85871014 None:intergenic
TAGTCAATTGAAGATGCCTG+TGG 0.737799 3_3:+85870205 Msa0480540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAATATTACATTCATT+TGG + chr3_3:85870503-85870522 Msa0480540:intron 15.0%
!! CTAAAAATTAATCAAAACTT+AGG - chr3_3:85870852-85870871 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG - chr3_3:85871342-85871361 None:intergenic 15.0%
!! ATATCAATATTACATTCATT+TGG + chr3_3:85870503-85870522 Msa0480540:intron 15.0%
!! CTAAAAATTAATCAAAACTT+AGG - chr3_3:85870852-85870871 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG - chr3_3:85871342-85871361 None:intergenic 15.0%
!!! TTGATTTGTTAATTTCATGT+AGG + chr3_3:85870566-85870585 Msa0480540:intron 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG - chr3_3:85871297-85871316 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG - chr3_3:85871447-85871466 None:intergenic 20.0%
!!! TTGATTTGTTAATTTCATGT+AGG + chr3_3:85870566-85870585 Msa0480540:intron 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG - chr3_3:85871297-85871316 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG - chr3_3:85871447-85871466 None:intergenic 20.0%
!!! TTTTTGTTACTTCCAAACTT+TGG + chr3_3:85870405-85870424 Msa0480540:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG + chr3_3:85870406-85870425 Msa0480540:CDS 25.0%
! TCAATATTACATTCATTTGG+AGG + chr3_3:85870506-85870525 Msa0480540:intron 25.0%
! CAATGAACTCATAAATGTAT+AGG + chr3_3:85870913-85870932 Msa0480540:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG - chr3_3:85871186-85871205 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG + chr3_3:85871185-85871204 Msa0480540:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG - chr3_3:85871329-85871348 None:intergenic 25.0%
!!! TTTTTGTTACTTCCAAACTT+TGG + chr3_3:85870405-85870424 Msa0480540:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG + chr3_3:85870406-85870425 Msa0480540:CDS 25.0%
! TCAATATTACATTCATTTGG+AGG + chr3_3:85870506-85870525 Msa0480540:intron 25.0%
! CAATGAACTCATAAATGTAT+AGG + chr3_3:85870913-85870932 Msa0480540:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG - chr3_3:85871186-85871205 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG + chr3_3:85871185-85871204 Msa0480540:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG - chr3_3:85871329-85871348 None:intergenic 25.0%
!!! CATGTTGTTTTGTTGTTGTT+GGG - chr3_3:85870144-85870163 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG + chr3_3:85870608-85870627 Msa0480540:CDS 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr3_3:85870649-85870668 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr3_3:85870654-85870673 Msa0480540:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr3_3:85870690-85870709 Msa0480540:CDS 30.0%
TGAACTCATAAATGTATAGG+TGG + chr3_3:85870916-85870935 Msa0480540:intron 30.0%
TCATTCTCCATAACTTCATT+TGG - chr3_3:85871046-85871065 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr3_3:85871104-85871123 Msa0480540:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG + chr3_3:85871367-85871386 Msa0480540:three_prime_UTR 30.0%
CAAACTCGTTTCAAAAACAA+GGG - chr3_3:85871397-85871416 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG - chr3_3:85871398-85871417 None:intergenic 30.0%
!!! CATGTTGTTTTGTTGTTGTT+GGG - chr3_3:85870144-85870163 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG + chr3_3:85870608-85870627 Msa0480540:CDS 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr3_3:85870649-85870668 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr3_3:85870654-85870673 Msa0480540:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr3_3:85870690-85870709 Msa0480540:CDS 30.0%
TGAACTCATAAATGTATAGG+TGG + chr3_3:85870916-85870935 Msa0480540:intron 30.0%
TCATTCTCCATAACTTCATT+TGG - chr3_3:85871046-85871065 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr3_3:85871104-85871123 Msa0480540:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG + chr3_3:85871367-85871386 Msa0480540:three_prime_UTR 30.0%
CAAACTCGTTTCAAAAACAA+GGG - chr3_3:85871397-85871416 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG - chr3_3:85871398-85871417 None:intergenic 30.0%
AAGCTACATAACTCACTCAA+AGG + chr3_3:85870089-85870108 Msa0480540:five_prime_UTR 35.0%
AGCTACATAACTCACTCAAA+GGG + chr3_3:85870090-85870109 Msa0480540:five_prime_UTR 35.0%
!!! TGTTTTGTTGTTGTTGGGTT+GGG - chr3_3:85870139-85870158 None:intergenic 35.0%
!!! TTGTTTTGTTGTTGTTGGGT+TGG - chr3_3:85870140-85870159 None:intergenic 35.0%
!!! CCATGTTGTTTTGTTGTTGT+TGG - chr3_3:85870145-85870164 None:intergenic 35.0%
CCAACAACAACAAAACAACA+TGG + chr3_3:85870142-85870161 Msa0480540:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr3_3:85870166-85870185 Msa0480540:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr3_3:85870181-85870200 None:intergenic 35.0%
CTTCAATTGACTAGATGTGT+TGG - chr3_3:85870198-85870217 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr3_3:85870246-85870265 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr3_3:85870247-85870266 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr3_3:85870248-85870267 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr3_3:85870281-85870300 Msa0480540:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr3_3:85870294-85870313 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr3_3:85870362-85870381 Msa0480540:CDS 35.0%
! ATTTTCAGTGACCCAAAGTT+TGG - chr3_3:85870420-85870439 None:intergenic 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr3_3:85870461-85870480 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG + chr3_3:85870579-85870598 Msa0480540:intron 35.0%
GACTCTTCAATTGGACTATT+TGG + chr3_3:85870588-85870607 Msa0480540:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr3_3:85870682-85870701 Msa0480540:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr3_3:85870691-85870710 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr3_3:85870689-85870708 Msa0480540:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr3_3:85870820-85870839 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr3_3:85871118-85871137 Msa0480540:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG - chr3_3:85871157-85871176 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG - chr3_3:85871158-85871177 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG + chr3_3:85871366-85871385 Msa0480540:three_prime_UTR 35.0%
AAGCTACATAACTCACTCAA+AGG + chr3_3:85870089-85870108 Msa0480540:five_prime_UTR 35.0%
AGCTACATAACTCACTCAAA+GGG + chr3_3:85870090-85870109 Msa0480540:five_prime_UTR 35.0%
!!! TGTTTTGTTGTTGTTGGGTT+GGG - chr3_3:85870139-85870158 None:intergenic 35.0%
!!! TTGTTTTGTTGTTGTTGGGT+TGG - chr3_3:85870140-85870159 None:intergenic 35.0%
!!! CCATGTTGTTTTGTTGTTGT+TGG - chr3_3:85870145-85870164 None:intergenic 35.0%
CCAACAACAACAAAACAACA+TGG + chr3_3:85870142-85870161 Msa0480540:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr3_3:85870166-85870185 Msa0480540:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr3_3:85870181-85870200 None:intergenic 35.0%
CTTCAATTGACTAGATGTGT+TGG - chr3_3:85870198-85870217 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr3_3:85870246-85870265 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr3_3:85870247-85870266 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr3_3:85870248-85870267 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr3_3:85870281-85870300 Msa0480540:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr3_3:85870294-85870313 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr3_3:85870362-85870381 Msa0480540:CDS 35.0%
! ATTTTCAGTGACCCAAAGTT+TGG - chr3_3:85870420-85870439 None:intergenic 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr3_3:85870461-85870480 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG + chr3_3:85870579-85870598 Msa0480540:intron 35.0%
GACTCTTCAATTGGACTATT+TGG + chr3_3:85870588-85870607 Msa0480540:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr3_3:85870682-85870701 Msa0480540:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr3_3:85870691-85870710 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr3_3:85870689-85870708 Msa0480540:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr3_3:85870820-85870839 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr3_3:85871118-85871137 Msa0480540:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG - chr3_3:85871157-85871176 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG - chr3_3:85871158-85871177 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG + chr3_3:85871366-85871385 Msa0480540:three_prime_UTR 35.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr3_3:85870182-85870201 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr3_3:85870205-85870224 Msa0480540:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + chr3_3:85870314-85870333 Msa0480540:CDS 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr3_3:85870332-85870351 Msa0480540:CDS 40.0%
AAAGCTCTTCTCTAGTGACA+AGG - chr3_3:85870388-85870407 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr3_3:85870446-85870465 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr3_3:85870667-85870686 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr3_3:85870719-85870738 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr3_3:85870718-85870737 Msa0480540:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr3_3:85870736-85870755 Msa0480540:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr3_3:85871073-85871092 Msa0480540:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + chr3_3:85871150-85871169 Msa0480540:CDS 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr3_3:85870182-85870201 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr3_3:85870205-85870224 Msa0480540:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + chr3_3:85870314-85870333 Msa0480540:CDS 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr3_3:85870332-85870351 Msa0480540:CDS 40.0%
AAAGCTCTTCTCTAGTGACA+AGG - chr3_3:85870388-85870407 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr3_3:85870446-85870465 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr3_3:85870667-85870686 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr3_3:85870719-85870738 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr3_3:85870718-85870737 Msa0480540:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr3_3:85870736-85870755 Msa0480540:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr3_3:85871073-85871092 Msa0480540:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + chr3_3:85871150-85871169 Msa0480540:CDS 40.0%
!! TTGTTGTTGTTGGGTTGGGA+AGG - chr3_3:85870135-85870154 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr3_3:85870209-85870228 Msa0480540:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr3_3:85870215-85870234 Msa0480540:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr3_3:85870337-85870356 Msa0480540:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr3_3:85870349-85870368 Msa0480540:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr3_3:85870634-85870653 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr3_3:85870699-85870718 Msa0480540:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr3_3:85870809-85870828 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr3_3:85870949-85870968 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr3_3:85870971-85870990 Msa0480540:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr3_3:85871008-85871027 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr3_3:85871036-85871055 Msa0480540:CDS 45.0%
AAGCAGAATCGTTTGATCCC+TGG + chr3_3:85871247-85871266 Msa0480540:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG - chr3_3:85871283-85871302 None:intergenic 45.0%
!! TTGTTGTTGTTGGGTTGGGA+AGG - chr3_3:85870135-85870154 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr3_3:85870209-85870228 Msa0480540:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr3_3:85870215-85870234 Msa0480540:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr3_3:85870337-85870356 Msa0480540:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr3_3:85870349-85870368 Msa0480540:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr3_3:85870634-85870653 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr3_3:85870699-85870718 Msa0480540:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr3_3:85870809-85870828 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr3_3:85870949-85870968 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr3_3:85870971-85870990 Msa0480540:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr3_3:85871008-85871027 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr3_3:85871036-85871055 Msa0480540:CDS 45.0%
AAGCAGAATCGTTTGATCCC+TGG + chr3_3:85871247-85871266 Msa0480540:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG - chr3_3:85871283-85871302 None:intergenic 45.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr3_3:85870214-85870233 Msa0480540:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr3_3:85870702-85870721 Msa0480540:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr3_3:85870933-85870952 Msa0480540:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr3_3:85871002-85871021 Msa0480540:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr3_3:85871007-85871026 Msa0480540:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr3_3:85871018-85871037 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr3_3:85871019-85871038 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr3_3:85871018-85871037 Msa0480540:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr3_3:85871019-85871038 Msa0480540:CDS 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG - chr3_3:85871274-85871293 None:intergenic 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr3_3:85870214-85870233 Msa0480540:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr3_3:85870702-85870721 Msa0480540:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr3_3:85870933-85870952 Msa0480540:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr3_3:85871002-85871021 Msa0480540:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr3_3:85871007-85871026 Msa0480540:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr3_3:85871018-85871037 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr3_3:85871019-85871038 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr3_3:85871018-85871037 Msa0480540:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr3_3:85871019-85871038 Msa0480540:CDS 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG - chr3_3:85871274-85871293 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr3_3:85870224-85870243 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr3_3:85870628-85870647 Msa0480540:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr3_3:85871017-85871036 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr3_3:85871017-85871036 Msa0480540:CDS 55.0%
GAGGTCATTGAGTCCAGGCT+TGG - chr3_3:85871278-85871297 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr3_3:85870224-85870243 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr3_3:85870628-85870647 Msa0480540:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr3_3:85871017-85871036 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr3_3:85871017-85871036 Msa0480540:CDS 55.0%
GAGGTCATTGAGTCCAGGCT+TGG - chr3_3:85871278-85871297 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+TGG + chr3_3:85871262-85871281 Msa0480540:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG - chr3_3:85871267-85871286 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG - chr3_3:85871268-85871287 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+TGG + chr3_3:85871262-85871281 Msa0480540:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG - chr3_3:85871267-85871286 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG - chr3_3:85871268-85871287 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85870088 85871473 85870088 ID=Msa0480540;Name=Msa0480540
chr3_3 mRNA 85870088 85871473 85870088 ID=Msa0480540-mRNA-1;Parent=Msa0480540;Name=Msa0480540-mRNA-1;_AED=0.26;_eAED=0.26;_QI=73|1|1|1|1|1|3|164|312
chr3_3 exon 85870088 85870480 85870088 ID=Msa0480540-mRNA-1:exon:24763;Parent=Msa0480540-mRNA-1
chr3_3 exon 85870588 85870831 85870588 ID=Msa0480540-mRNA-1:exon:24764;Parent=Msa0480540-mRNA-1
chr3_3 exon 85870935 85871473 85870935 ID=Msa0480540-mRNA-1:exon:24765;Parent=Msa0480540-mRNA-1
chr3_3 five_prime_UTR 85870088 85870160 85870088 ID=Msa0480540-mRNA-1:five_prime_utr;Parent=Msa0480540-mRNA-1
chr3_3 CDS 85870161 85870480 85870161 ID=Msa0480540-mRNA-1:cds;Parent=Msa0480540-mRNA-1
chr3_3 CDS 85870588 85870831 85870588 ID=Msa0480540-mRNA-1:cds;Parent=Msa0480540-mRNA-1
chr3_3 CDS 85870935 85871309 85870935 ID=Msa0480540-mRNA-1:cds;Parent=Msa0480540-mRNA-1
chr3_3 three_prime_UTR 85871310 85871473 85871310 ID=Msa0480540-mRNA-1:three_prime_utr;Parent=Msa0480540-mRNA-1
Gene Sequence

>Msa0480540

ATGGATAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACATCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCATATGGTTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGCCTTGTCACTAGAGAAGAGCTTTTTGTTACTTCCAAACTTTGGGTCACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAATTGGACTATTTGGACTTGTATTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTCGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAAAGAATGAACCAAAATTTGCGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATTGATCAAATTAAGCAGAATCGTTTGATCCCTGGACCAACCAAGCCTGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0480540

MDSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*