AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072940 MtrunA17_Chr1g0179801 84.309 376 14 3 1 331 1 376 0.0 631
Msa0072940 MtrunA17_Chr7g0265221 59.474 380 102 5 1 328 1 380 1.40e-159 451
Msa0072940 MtrunA17_Chr7g0250511 34.473 351 175 6 23 328 11 351 1.15e-66 213
Msa0072940 MtrunA17_Chr8g0345831 36.991 319 147 5 34 308 15 323 9.24e-58 190
Msa0072940 MtrunA17_Chr3g0128001 31.965 341 177 7 28 324 4 333 1.66e-51 173
Msa0072940 MtrunA17_Chr5g0426891 30.086 349 180 8 26 324 4 338 4.71e-48 164
Msa0072940 MtrunA17_Chr4g0050031 32.353 340 168 9 43 328 35 366 1.47e-44 156
Msa0072940 MtrunA17_Chr4g0006371 29.363 361 187 8 26 325 14 367 2.67e-42 150
Msa0072940 MtrunA17_Chr7g0242551 29.888 358 180 9 26 325 15 359 3.92e-42 149
Msa0072940 MtrunA17_Chr8g0375671 29.363 361 190 9 19 328 11 357 2.56e-41 147
Msa0072940 MtrunA17_Chr7g0239111 29.830 352 183 10 26 328 20 356 5.26e-41 147
Msa0072940 MtrunA17_Chr2g0314381 27.838 370 200 10 13 328 24 380 2.60e-40 145
Msa0072940 MtrunA17_Chr8g0375601 27.195 353 200 7 26 330 11 354 2.07e-39 142
Msa0072940 MtrunA17_Chr2g0314391 27.027 370 208 8 7 328 18 373 3.81e-39 142
Msa0072940 MtrunA17_Chr8g0375681 30.070 286 159 6 75 328 9 285 4.69e-39 140
Msa0072940 MtrunA17_Chr3g0126741 31.338 284 133 7 65 297 59 331 5.71e-39 141
Msa0072940 MtrunA17_Chr5g0420981 26.857 350 199 7 25 328 17 355 7.36e-39 141
Msa0072940 MtrunA17_Chr5g0421091 26.934 349 197 7 26 328 11 347 8.35e-39 140
Msa0072940 MtrunA17_Chr8g0365241 26.496 351 196 7 26 328 23 359 4.79e-38 139
Msa0072940 MtrunA17_Chr1g0184151 28.955 335 176 7 26 311 1 322 1.87e-37 137
Msa0072940 MtrunA17_Chr5g0420941 26.934 349 196 9 26 328 11 346 2.16e-37 137
Msa0072940 MtrunA17_Chr5g0420901 26.923 364 199 8 15 328 1 347 4.37e-37 136
Msa0072940 MtrunA17_Chr7g0239101 27.195 353 195 9 26 330 20 358 4.63e-37 136
Msa0072940 MtrunA17_Chr3g0113641 29.213 356 184 9 26 327 15 356 6.25e-37 135
Msa0072940 MtrunA17_Chr7g0239821 28.931 318 168 8 64 333 63 370 1.99e-36 134
Msa0072940 MtrunA17_Chr1g0184121 29.688 320 167 7 37 310 14 321 6.49e-36 132
Msa0072940 MtrunA17_Chr5g0423221 29.787 282 156 6 80 328 101 373 6.67e-36 133
Msa0072940 MtrunA17_Chr2g0314401 26.503 366 209 8 10 328 2 354 7.35e-36 133
Msa0072940 MtrunA17_Chr7g0220011 28.739 341 185 9 29 323 5 333 3.10e-35 130
Msa0072940 MtrunA17_Chr5g0423191 27.874 348 175 11 37 335 24 344 3.37e-35 131
Msa0072940 MtrunA17_Chr7g0239121 29.167 336 173 11 26 311 16 336 3.90e-35 131
Msa0072940 MtrunA17_Chr5g0398291 28.274 336 188 8 26 311 8 340 3.54e-34 128
Msa0072940 MtrunA17_Chr8g0375571 26.816 358 191 10 26 329 11 351 4.02e-34 128
Msa0072940 MtrunA17_Chr1g0184161 28.660 321 170 7 37 311 15 322 5.37e-34 127
Msa0072940 MtrunA17_Chr1g0184111 28.750 320 170 7 37 310 14 321 9.75e-34 127
Msa0072940 MtrunA17_Chr5g0420951 26.346 353 195 10 26 328 18 355 9.77e-34 127
Msa0072940 MtrunA17_Chr2g0296371 25.410 366 206 7 15 328 6 356 1.06e-33 127
Msa0072940 MtrunA17_Chr1g0184101 27.190 331 183 7 26 309 1 320 2.14e-33 126
Msa0072940 MtrunA17_Chr5g0423201 28.873 284 156 5 80 328 77 349 2.94e-33 126
Msa0072940 MtrunA17_Chr2g0311631 26.741 359 196 8 24 330 20 363 4.07e-33 125
Msa0072940 MtrunA17_Chr5g0437181 28.291 357 186 9 26 327 14 355 4.83e-33 125
Msa0072940 MtrunA17_Chr7g0239071 29.893 281 156 6 80 328 30 301 5.41e-33 124
Msa0072940 MtrunA17_Chr5g0423211 25.071 351 202 8 26 328 13 350 5.48e-33 125
Msa0072940 MtrunA17_Chr5g0412651 29.305 331 171 8 41 320 19 337 5.78e-33 125
Msa0072940 MtrunA17_Chr8g0336851 26.761 355 192 9 25 328 27 364 1.02e-32 124
Msa0072940 MtrunA17_Chr2g0311711 28.800 375 186 11 5 315 1 358 1.41e-32 124
Msa0072940 MtrunA17_Chr2g0311831 29.805 359 178 14 25 328 32 371 2.21e-32 124
Msa0072940 MtrunA17_Chr8g0370711 27.586 290 155 6 59 300 46 328 3.20e-32 123
Msa0072940 MtrunA17_Chr5g0412671 30.605 281 157 5 80 328 71 345 3.65e-32 122
Msa0072940 MtrunA17_Chr5g0423251 24.929 353 200 9 25 328 12 348 3.69e-32 123
Msa0072940 MtrunA17_Chr5g0421011 25.281 356 205 7 20 328 7 348 5.15e-32 122
Msa0072940 MtrunA17_Chr3g0109041 26.912 353 202 9 26 330 10 354 6.56e-32 122
Msa0072940 MtrunA17_Chr8g0370721 28.746 327 170 8 25 300 14 328 9.79e-32 122
Msa0072940 MtrunA17_Chr7g0232161 27.532 316 163 10 26 292 25 323 1.13e-31 121
Msa0072940 MtrunA17_Chr5g0412681 29.293 297 162 6 65 319 33 323 1.72e-31 120
Msa0072940 MtrunA17_Chr5g0421101 25.723 346 196 8 26 324 13 344 2.62e-31 120
Msa0072940 MtrunA17_Chr8g0371931 31.818 242 121 7 80 287 72 303 5.77e-31 120
Msa0072940 MtrunA17_Chr3g0093751 26.099 364 202 8 15 328 8 354 1.04e-30 119
Msa0072940 MtrunA17_Chr8g0375701 28.205 351 192 10 25 328 18 355 1.26e-30 119
Msa0072940 MtrunA17_Chr6g0472861 28.235 340 181 11 25 311 27 356 1.76e-30 119
Msa0072940 MtrunA17_Chr8g0348081 27.247 356 189 9 25 328 27 364 2.25e-30 118
Msa0072940 MtrunA17_Chr3g0093741 26.099 364 202 8 15 328 8 354 4.67e-30 117
Msa0072940 MtrunA17_Chr5g0421041 25.833 360 189 10 25 335 12 342 7.00e-30 117
Msa0072940 MtrunA17_Chr5g0424201 27.692 325 166 11 37 309 20 327 7.22e-30 116
Msa0072940 MtrunA17_Chr6g0455481 27.437 277 163 4 80 325 70 339 7.85e-30 116
Msa0072940 MtrunA17_Chr8g0336761 26.124 356 193 9 25 328 27 364 1.11e-29 116
Msa0072940 MtrunA17_Chr3g0093761 26.146 371 206 9 8 328 1 353 1.18e-29 116
Msa0072940 MtrunA17_Chr7g0225881 27.164 335 186 9 25 310 27 352 1.49e-29 116
Msa0072940 MtrunA17_Chr3g0145171 26.316 304 163 7 59 308 46 342 1.74e-29 115
Msa0072940 MtrunA17_Chr5g0405411 30.705 241 125 6 80 287 72 303 1.88e-29 115
Msa0072940 MtrunA17_Chr2g0311761 27.887 355 191 11 25 328 32 372 1.92e-29 116
Msa0072940 MtrunA17_Chr3g0125201 29.577 284 137 6 63 296 1 271 2.70e-29 114
Msa0072940 MtrunA17_Chr1g0162191 26.100 341 186 10 34 323 20 345 3.15e-29 115
Msa0072940 MtrunA17_Chr1g0187831 27.434 339 184 9 25 311 29 357 4.19e-29 115
Msa0072940 MtrunA17_Chr8g0336861 26.549 339 180 10 25 311 27 348 6.42e-29 114
Msa0072940 MtrunA17_Chr3g0102041 31.276 243 121 7 80 287 72 303 8.06e-29 114
Msa0072940 MtrunA17_Chr7g0220001 26.923 260 153 4 80 309 69 321 1.75e-28 112
Msa0072940 MtrunA17_Chr8g0371921 30.417 240 127 6 80 287 72 303 1.95e-28 113
Msa0072940 MtrunA17_Chr1g0170631 33.673 196 94 4 163 328 3 192 2.23e-28 108
Msa0072940 MtrunA17_Chr8g0354261 28.739 341 176 9 25 312 32 358 2.53e-28 113
Msa0072940 MtrunA17_Chr2g0311681 27.405 343 178 8 25 311 26 353 2.83e-28 112
Msa0072940 MtrunA17_Chr7g0247991 27.933 358 188 10 25 328 32 373 7.50e-28 111
Msa0072940 MtrunA17_Chr1g0187821 28.011 357 192 10 24 328 27 370 8.87e-28 111
Msa0072940 MtrunA17_Chr8g0336631 26.331 357 192 11 25 328 27 365 1.01e-27 111
Msa0072940 MtrunA17_Chr8g0354241 26.667 360 197 9 25 331 32 377 1.07e-27 111
Msa0072940 MtrunA17_Chr2g0311701 26.979 341 182 9 25 311 32 359 1.93e-27 110
Msa0072940 MtrunA17_Chr2g0311691 27.114 343 179 8 25 311 26 353 3.70e-27 109
Msa0072940 MtrunA17_Chr7g0266651 25.352 355 199 10 25 328 23 362 6.80e-27 108
Msa0072940 MtrunA17_Chr5g0424211 26.861 309 167 8 37 297 18 315 8.58e-27 108
Msa0072940 MtrunA17_Chr8g0336781 24.789 355 200 8 25 328 62 400 1.76e-26 108
Msa0072940 MtrunA17_Chr3g0114861 27.439 328 181 10 26 308 6 321 2.59e-26 106
Msa0072940 MtrunA17_Chr1g0187811 26.593 361 197 10 25 328 144 493 3.00e-26 108
Msa0072940 MtrunA17_Chr8g0335411 27.348 362 185 12 25 328 32 373 3.10e-26 107
Msa0072940 MtrunA17_Chr2g0311921 27.114 343 181 11 25 314 18 344 4.66e-26 106
Msa0072940 MtrunA17_Chr3g0087031 26.523 279 165 6 80 328 92 360 5.35e-26 106
Msa0072940 MtrunA17_Chr2g0311741 28.387 310 164 7 47 308 9 308 1.38e-25 104
Msa0072940 MtrunA17_Chr1g0158011 28.571 273 151 7 88 329 3 262 1.45e-25 103
Msa0072940 MtrunA17_Chr7g0239091 27.476 313 159 10 64 328 159 451 2.39e-25 105
Msa0072940 MtrunA17_Chr1g0204181 27.273 330 167 9 37 309 38 351 3.11e-25 104
Msa0072940 MtrunA17_Chr2g0332191 28.247 308 173 7 65 333 52 350 3.85e-25 104
Msa0072940 MtrunA17_Chr2g0311861 28.529 340 187 11 25 328 28 347 8.38e-25 102
Msa0072940 MtrunA17_Chr4g0066121 28.529 333 163 13 26 303 28 340 1.02e-24 102
Msa0072940 MtrunA17_Chr1g0161041 27.089 347 188 9 25 322 59 389 1.32e-24 103
Msa0072940 MtrunA17_Chr1g0184241 25.074 339 181 7 24 310 32 349 1.68e-24 102
Msa0072940 MtrunA17_Chr4g0045411 27.985 268 144 7 80 308 68 325 2.12e-24 101
Msa0072940 MtrunA17_Chr8g0336751 26.113 337 185 9 24 310 57 379 3.88e-24 101
Msa0072940 MtrunA17_Chr1g0191201 25.970 335 177 10 59 330 47 373 4.61e-24 101
Msa0072940 MtrunA17_Chr4g0064781 26.692 266 151 6 80 308 78 336 5.02e-24 100
Msa0072940 MtrunA17_Chr8g0364471 26.471 340 182 9 25 311 32 356 1.15e-23 100
Msa0072940 MtrunA17_Chr3g0145181 24.716 352 195 11 18 313 5 342 3.36e-23 98.6
Msa0072940 MtrunA17_Chr7g0235951 25.978 358 195 10 25 328 32 373 3.54e-23 98.6
Msa0072940 MtrunA17_Chr1g0167911 26.163 344 194 9 25 321 19 349 5.24e-23 98.2
Msa0072940 MtrunA17_Chr1g0161081 26.667 345 194 10 24 322 35 366 8.48e-23 97.8
Msa0072940 MtrunA17_Chr6g0474391 26.220 328 173 8 37 309 43 356 9.63e-23 97.8
Msa0072940 MtrunA17_Chr1g0162351 26.897 290 152 8 80 324 108 382 2.21e-22 96.7
Msa0072940 MtrunA17_Chr1g0161111 25.797 345 193 9 24 320 94 423 2.55e-22 97.1
Msa0072940 MtrunA17_Chr4g0045471 26.316 285 158 8 80 320 63 339 3.74e-22 95.5
Msa0072940 MtrunA17_Chr1g0167961 27.035 344 176 13 25 313 34 357 4.77e-22 95.5
Msa0072940 MtrunA17_Chr4g0045441 26.510 298 160 9 80 333 63 345 6.16e-22 95.1
Msa0072940 MtrunA17_Chr1g0167951 26.377 345 186 12 9 303 4 330 6.40e-22 95.1
Msa0072940 MtrunA17_Chr4g0055591 24.929 353 201 10 25 328 24 361 6.52e-22 95.1
Msa0072940 MtrunA17_Chr5g0420721 27.170 265 137 8 105 335 4 246 6.61e-22 93.2
Msa0072940 MtrunA17_Chr4g0045451 26.087 276 151 8 80 311 63 329 1.97e-21 93.6
Msa0072940 MtrunA17_Chr3g0130391 25.000 356 191 11 29 324 38 377 2.82e-21 93.6
Msa0072940 MtrunA17_Chr1g0162361 28.667 300 160 11 80 335 55 344 4.74e-21 92.4
Msa0072940 MtrunA17_Chr1g0162321 26.298 289 155 8 80 324 108 382 6.93e-21 92.4
Msa0072940 MtrunA17_Chr8g0362741 27.626 257 139 8 25 249 32 273 1.41e-20 90.1
Msa0072940 MtrunA17_Chr1g0170641 33.793 145 71 2 37 163 24 161 1.93e-20 86.7
Msa0072940 MtrunA17_Chr7g0236011 25.140 358 198 10 25 328 32 373 2.24e-20 90.9
Msa0072940 MtrunA17_Chr7g0235981 26.398 322 173 9 25 311 18 310 3.50e-20 89.7
Msa0072940 MtrunA17_Chr3g0126761 30.061 163 82 2 163 297 44 202 4.57e-20 87.8
Msa0072940 MtrunA17_Chr4g0045431 26.148 283 162 5 80 321 63 339 8.61e-20 89.0
Msa0072940 MtrunA17_Chr5g0420881 30.769 143 70 1 215 328 2 144 9.62e-20 84.3
Msa0072940 MtrunA17_Chr4g0053251 27.083 240 142 7 81 287 50 289 1.83e-19 87.4
Msa0072940 MtrunA17_Chr3g0121141 27.119 295 149 9 65 309 4 282 4.88e-19 86.3
Msa0072940 MtrunA17_Chr4g0011311 24.746 295 159 8 25 273 32 309 9.86e-19 85.1
Msa0072940 MtrunA17_Chr3g0125421 25.455 330 172 11 37 309 16 328 2.42e-18 84.7
Msa0072940 MtrunA17_Chr8g0384461 25.000 264 157 5 80 309 81 337 2.63e-18 84.7
Msa0072940 MtrunA17_Chr2g0289341 26.400 250 129 7 80 292 35 266 2.85e-18 84.0
Msa0072940 MtrunA17_Chr8g0351101 24.316 329 177 8 37 309 33 345 4.20e-18 84.3
Msa0072940 MtrunA17_Chr4g0066991 25.905 359 174 12 25 328 32 353 9.54e-18 83.2
Msa0072940 MtrunA17_Chr5g0439011 25.882 255 140 6 80 300 36 275 3.93e-17 80.9
Msa0072940 MtrunA17_Chr8g0384481 23.653 334 189 7 37 319 38 356 7.04e-17 80.9
Msa0072940 MtrunA17_Chr3g0114871 24.549 277 141 9 37 264 18 275 7.54e-16 76.6
Msa0072940 MtrunA17_Chr1g0158031 29.775 178 93 5 180 329 8 181 8.26e-16 74.7
Msa0072940 MtrunA17_Chr3g0092531 27.686 242 132 7 80 291 41 269 1.25e-15 76.6
Msa0072940 MtrunA17_Chr4g0075471 41.667 72 42 0 221 292 65 136 2.76e-15 72.4
Msa0072940 MtrunA17_Chr8g0358941 24.514 257 139 8 80 292 52 297 1.04e-14 73.9
Msa0072940 MtrunA17_Chr8g0336801 32.432 111 72 1 221 328 46 156 1.89e-14 70.1
Msa0072940 MtrunA17_Chr1g0167931 24.702 336 175 13 25 323 19 313 2.31e-14 72.8
Msa0072940 MtrunA17_Chr2g0311641 30.464 151 82 3 24 157 20 164 8.46e-14 68.6
Msa0072940 MtrunA17_Chr1g0184141 29.921 127 81 3 95 220 8 127 1.11e-13 67.0
Msa0072940 MtrunA17_Chr1g0158021 27.322 183 100 5 57 219 41 210 1.15e-12 67.0
Msa0072940 MtrunA17_Chr8g0336831 27.397 219 119 9 24 220 26 226 2.13e-11 63.2
Msa0072940 MtrunA17_Chr6g0488511 37.500 88 51 2 219 305 193 277 7.05e-11 62.4
Msa0072940 MtrunA17_Chr8g0375641 27.108 166 93 5 19 163 11 169 8.08e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072940 AT2G36690.2 53.371 356 116 4 21 331 16 366 1.30e-129 375
Msa0072940 AT2G36690.1 53.371 356 116 4 21 331 16 366 1.30e-129 375
Msa0072940 AT2G44800.1 35.735 347 169 5 29 330 19 356 2.21e-68 218
Msa0072940 AT3G60290.1 34.366 355 179 5 18 327 8 353 2.77e-66 213
Msa0072940 AT4G10500.1 35.855 304 141 4 37 296 20 313 1.28e-58 192
Msa0072940 AT4G10490.1 34.069 317 151 5 22 294 7 309 1.13e-56 187
Msa0072940 AT5G07480.1 30.460 348 175 8 34 328 21 354 7.26e-51 172
Msa0072940 AT5G24530.1 31.293 294 145 5 28 276 4 285 2.73e-45 157
Msa0072940 AT3G11180.1 29.395 347 191 6 26 325 56 395 1.95e-41 149
Msa0072940 AT2G38240.1 28.889 360 181 10 26 329 12 352 1.05e-40 146
Msa0072940 AT3G11180.2 28.857 350 191 7 26 324 56 398 2.02e-39 144
Msa0072940 AT1G55290.1 30.838 334 172 8 24 311 24 344 7.12e-39 141
Msa0072940 AT5G05600.1 30.286 350 184 8 26 325 27 366 5.11e-37 137
Msa0072940 AT5G07480.2 30.677 251 133 5 113 328 1 245 2.15e-36 132
Msa0072940 AT3G21420.1 27.577 359 197 8 23 328 14 362 6.17e-35 131
Msa0072940 AT1G17010.1 26.420 352 200 9 26 328 17 358 4.11e-34 129
Msa0072940 AT3G13610.1 27.761 335 180 8 24 311 25 344 2.27e-33 127
Msa0072940 AT3G12900.1 27.410 332 181 8 24 309 20 337 2.39e-33 126
Msa0072940 AT3G55970.1 26.062 353 204 7 26 327 14 360 8.33e-33 125
Msa0072940 AT1G17020.1 26.882 279 169 5 80 328 85 358 3.95e-31 120
Msa0072940 AT4G25420.1 28.173 323 172 7 37 309 40 352 1.93e-30 119
Msa0072940 AT4G25310.1 28.114 281 159 7 80 328 84 353 3.17e-30 118
Msa0072940 AT4G25300.1 27.599 279 166 5 80 328 84 356 1.68e-29 116
Msa0072940 AT4G25310.2 29.762 252 164 6 80 328 84 325 2.65e-29 115
Msa0072940 AT4G16330.2 28.788 264 145 7 80 310 93 346 1.43e-28 114
Msa0072940 AT4G22880.1 25.519 337 197 8 26 311 7 340 3.88e-28 112
Msa0072940 AT4G22880.2 25.519 337 197 8 26 311 7 340 3.88e-28 112
Msa0072940 AT4G22880.3 25.519 337 197 8 26 311 7 340 3.88e-28 112
Msa0072940 AT3G51240.1 30.165 242 125 7 80 287 71 302 5.26e-28 112
Msa0072940 AT5G12270.1 29.333 375 198 12 5 328 1 359 1.50e-27 110
Msa0072940 AT1G04350.1 28.011 357 189 13 24 328 20 360 4.94e-27 109
Msa0072940 AT5G59530.1 28.698 338 171 13 25 308 23 344 1.14e-26 108
Msa0072940 AT1G78550.2 26.182 275 166 5 80 324 7 274 1.90e-26 106
Msa0072940 AT5G20550.1 26.074 326 179 9 26 300 9 323 4.01e-26 107
Msa0072940 AT2G30840.1 27.566 341 178 11 25 311 20 345 4.42e-26 107
Msa0072940 AT2G30830.1 28.358 335 173 10 20 303 15 333 4.57e-26 107
Msa0072940 AT1G78550.1 24.478 335 195 7 37 324 29 352 5.59e-26 106
Msa0072940 AT1G06620.1 27.327 333 182 9 24 308 25 345 6.60e-26 106
Msa0072940 AT1G77330.1 26.014 296 160 6 63 309 1 286 8.31e-26 105
Msa0072940 AT5G54000.2 27.273 253 144 5 80 300 79 323 1.51e-25 105
Msa0072940 AT4G16330.1 28.926 242 130 6 101 310 9 240 1.51e-25 103
Msa0072940 AT3G19010.1 27.933 358 175 13 41 333 8 347 1.53e-25 105
Msa0072940 AT3G19010.4 27.933 358 175 13 41 333 8 347 1.53e-25 105
Msa0072940 AT5G43450.1 26.590 346 196 9 25 323 23 357 4.32e-25 104
Msa0072940 AT5G08640.2 27.414 321 170 8 37 308 19 325 5.19e-25 103
Msa0072940 AT5G08640.1 27.414 321 170 8 37 308 19 325 5.19e-25 103
Msa0072940 AT5G54000.1 26.693 251 144 5 82 300 1 243 1.17e-24 101
Msa0072940 AT1G03400.1 25.656 343 198 9 25 322 19 349 1.70e-24 102
Msa0072940 AT2G06960.1 35.802 162 67 3 180 318 1 148 2.29e-24 97.4
Msa0072940 AT5G43440.1 26.994 326 181 9 25 302 23 339 2.81e-24 102
Msa0072940 AT1G06650.2 27.035 344 179 12 24 309 24 353 1.43e-23 100
Msa0072940 AT3G51240.2 29.825 228 116 7 94 287 1 218 1.86e-23 98.2
Msa0072940 AT5G07200.1 24.118 340 186 8 28 309 28 353 2.35e-23 99.8
Msa0072940 AT5G20400.1 26.693 251 148 4 80 300 78 322 3.14e-23 99.0
Msa0072940 AT1G49390.1 24.771 327 181 9 26 300 9 322 5.69e-23 98.2
Msa0072940 AT5G51810.1 26.006 323 175 8 37 309 42 350 9.40e-23 98.2
Msa0072940 AT1G03410.2 27.300 337 181 11 24 308 18 342 1.30e-22 97.4
Msa0072940 AT1G03410.1 27.300 337 181 11 24 308 55 379 1.54e-22 97.8
Msa0072940 AT1G04380.1 28.435 313 161 11 37 302 23 319 1.55e-22 97.1
Msa0072940 AT2G30840.3 27.273 341 173 12 25 311 20 339 1.59e-22 97.1
Msa0072940 AT5G59540.1 27.273 341 173 13 25 308 24 346 2.53e-22 96.7
Msa0072940 AT1G15550.1 25.271 277 176 4 80 327 82 356 5.12e-22 95.5
Msa0072940 AT3G61400.1 24.802 379 216 11 1 323 1 366 5.40e-22 95.9
Msa0072940 AT1G49390.2 26.087 253 143 6 82 300 1 243 6.76e-22 94.0
Msa0072940 AT2G25450.1 25.970 335 181 9 25 307 20 339 8.29e-22 95.1
Msa0072940 AT1G60980.1 25.000 332 172 9 37 309 36 349 2.28e-21 94.0
Msa0072940 AT1G06645.1 25.360 347 183 11 24 313 37 364 2.83e-21 94.0
Msa0072940 AT3G19010.3 26.970 330 184 11 41 333 8 317 7.10e-21 92.0
Msa0072940 AT3G19000.1 23.460 341 190 7 41 319 8 339 3.59e-20 90.5
Msa0072940 AT1G03400.2 23.720 371 198 10 25 322 19 377 3.99e-19 87.8
Msa0072940 AT5G63590.1 29.167 264 143 7 80 305 42 299 4.45e-19 86.7
Msa0072940 AT5G43935.1 29.339 242 154 6 80 309 47 283 8.07e-19 85.5
Msa0072940 AT4G25300.2 27.551 196 108 3 162 328 72 262 1.63e-18 84.3
Msa0072940 AT1G12010.1 25.704 284 148 8 60 294 2 271 2.87e-18 84.7
Msa0072940 AT1G44090.1 24.662 296 160 7 59 299 57 344 1.74e-17 83.2
Msa0072940 AT4G25420.2 26.255 259 131 7 37 245 40 288 8.04e-17 80.1
Msa0072940 AT2G30840.2 27.372 274 135 9 25 248 20 279 2.41e-16 79.0
Msa0072940 AT1G62380.1 23.509 285 153 7 60 294 2 271 2.95e-16 79.0
Msa0072940 AT1G06620.2 26.296 270 142 8 24 248 25 282 5.51e-16 77.4
Msa0072940 AT5G43440.2 24.907 269 148 7 25 248 23 282 1.38e-15 76.3
Msa0072940 AT4G21200.1 25.818 275 144 9 61 288 38 299 1.80e-15 76.6
Msa0072940 AT1G50960.1 26.165 279 145 8 45 274 20 286 4.92e-15 75.5
Msa0072940 AT4G22870.1 37.234 94 58 1 219 311 3 96 1.34e-14 69.7
Msa0072940 AT1G05010.1 25.180 278 144 7 65 292 4 267 1.70e-14 73.6
Msa0072940 AT5G43450.2 24.254 268 148 7 25 248 23 279 1.19e-13 70.9
Msa0072940 AT3G19010.2 26.740 273 120 11 41 249 8 264 7.17e-13 68.6
Msa0072940 AT4G22870.2 36.364 88 55 1 225 311 50 137 3.56e-12 63.9
Msa0072940 AT5G63595.1 25.225 222 112 5 80 272 53 249 2.39e-11 63.9

Find 68 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAACTTGGGGCCTATT+TGG 0.213981 1_2:+46085747 None:intergenic
ACACTTATTTCTAAGGTTAA+TGG 0.222487 1_2:-46082871 Msa0072940:CDS
ACAACGAATGCATTATTAAT+AGG 0.241440 1_2:+46082509 None:intergenic
AAACCAAACACTTATTTCTA+AGG 0.253076 1_2:-46082878 Msa0072940:CDS
TGAACCATTGTTCTTGGAAT+TGG 0.275458 1_2:+46082540 None:intergenic
CTGATTTGATTGGTCCAAAT+AGG 0.299399 1_2:-46085761 Msa0072940:CDS
ATCGGTGTCTGCGTAACGTT+TGG 0.310799 1_2:+46081304 None:intergenic
AAATCAGAGAAATCTATTAT+TGG 0.318250 1_2:+46085777 None:intergenic
GGACAATATTATCAAAGAAT+TGG 0.341222 1_2:-46082799 Msa0072940:CDS
GAACCGTGAACCATTGTTCT+TGG 0.352914 1_2:+46082534 None:intergenic
CTTAAGTCCACGGGTGAATC+AGG 0.362636 1_2:+46084528 None:intergenic
TGCCTGATTATCTTCCTCAT+TGG 0.367558 1_2:-46084551 Msa0072940:CDS
AATCTATTATTGGTAGTTGT+AGG 0.377947 1_2:+46085787 None:intergenic
ATAGATTTCTCTGATTTGAT+TGG 0.378631 1_2:-46085771 Msa0072940:CDS
TACTTACCTCTTTCCTCAAA+TGG 0.387893 1_2:+46084681 None:intergenic
CTGATTCACCCGTGGACTTA+AGG 0.394075 1_2:-46084527 Msa0072940:intron
TATACCTAAACTCTCTACTA+TGG 0.399689 1_2:+46082845 None:intergenic
GTCAAGCAGCTAGTTGATAA+TGG 0.406429 1_2:-46085897 Msa0072940:CDS
GGAAGATGGAAGCCAGCTTA+TGG 0.408489 1_2:-46082778 Msa0072940:CDS
ATGAGAGCAGCAGTTCGATA+TGG 0.411261 1_2:-46084645 Msa0072940:CDS
GGCCAATGAGGAAGATAATC+AGG 0.414428 1_2:+46084549 None:intergenic
TAACCTTAGAAATAAGTGTT+TGG 0.414596 1_2:+46082875 None:intergenic
ACTCTTTCTCTTGGTTTCGT+TGG 0.418266 1_2:+46081253 None:intergenic
GAATCTTCTGTATTCTTAGC+AGG 0.420646 1_2:+46085828 None:intergenic
TCGGTGTCTGCGTAACGTTT+GGG 0.421674 1_2:+46081305 None:intergenic
GAAGCCATAGTAGAGAGTTT+AGG 0.422645 1_2:-46082849 Msa0072940:CDS
GTCTGCGTAACGTTTGGGAT+TGG 0.431669 1_2:+46081310 None:intergenic
CTCCAGAAAACTCTTTCTCT+TGG 0.443477 1_2:+46081244 None:intergenic
GGCAAGAAAAGTTTCAAAAT+CGG 0.448587 1_2:+46081286 None:intergenic
TTAATTAAAATGTAGGAAAG+TGG 0.466796 1_2:-46082919 Msa0072940:intron
CAAAAGACAAAGTGTTCTGT+TGG 0.471022 1_2:-46084605 Msa0072940:CDS
AATACAAGAGTGTGCTACAT+AGG 0.473985 1_2:-46081433 Msa0072940:CDS
ACATAAGATGTCAGCTGGAA+TGG 0.482317 1_2:-46085979 None:intergenic
TGAAGCCAACAAAGAAGAAA+AGG 0.484492 1_2:-46082820 Msa0072940:CDS
GATCTTCCATTTGAGGAAAG+AGG 0.501424 1_2:-46084687 Msa0072940:CDS
GGTTTCGTTGGTTGAAATGT+GGG 0.516096 1_2:+46081265 None:intergenic
TAACATCTTCTGAGATTCCA+TGG 0.516143 1_2:+46084745 None:intergenic
ATTATCAAAGAATTGGAAGA+TGG 0.516585 1_2:-46082792 Msa0072940:CDS
TAGTTAGTGAAGATATCAAA+GGG 0.523214 1_2:-46085953 Msa0072940:CDS
TGGTTTCGTTGGTTGAAATG+TGG 0.525695 1_2:+46081264 None:intergenic
ATATTACATAAGATGTCAGC+TGG 0.526489 1_2:-46085984 None:intergenic
ATAGAAAATCAATTTCTGAA+TGG 0.536962 1_2:-46085921 Msa0072940:CDS
ATTCCAAGAACAATGGTTCA+CGG 0.541633 1_2:-46082537 Msa0072940:CDS
TTCTTAGCAGGACGTTCAGA+AGG 0.559675 1_2:+46085840 None:intergenic
GTGTTTGGTTTCTTCTGCGT+AGG 0.567429 1_2:+46082890 None:intergenic
ATAGTTAGTGAAGATATCAA+AGG 0.575844 1_2:-46085954 Msa0072940:CDS
AATGCATTCGTTGTCAATGT+TGG 0.578383 1_2:-46082500 Msa0072940:CDS
ATACAAGAGTGTGCTACATA+GGG 0.579473 1_2:-46081432 Msa0072940:CDS
TTGATAAAGGTGGTAAACCA+TGG 0.580589 1_2:-46084762 Msa0072940:intron
TTAGCAGGACGTTCAGAAGG+AGG 0.581753 1_2:+46085843 None:intergenic
AAATACACACCTTAAGTCCA+CGG 0.583362 1_2:+46084518 None:intergenic
AGATGTTATCAACAACATGA+TGG 0.583825 1_2:-46084730 Msa0072940:CDS
ATTAAAATGTAGGAAAGTGG+CGG 0.593821 1_2:-46082916 Msa0072940:intron
GAAGATAATCAGGCAAAGGA+TGG 0.594394 1_2:+46084559 None:intergenic
GAAGATATCAAAGGGGTCGA+TGG 0.595999 1_2:-46085945 Msa0072940:CDS
TGAGGAAGATAATCAGGCAA+AGG 0.601191 1_2:+46084555 None:intergenic
TCATTGGCCTGATTCACCCG+TGG 0.604316 1_2:-46084535 Msa0072940:CDS
AATGCTATGCAATGAAGCAA+TGG 0.614624 1_2:+46081379 None:intergenic
TTGGCTTTGTCAATGAGTGT+AGG 0.614803 1_2:+46081329 None:intergenic
AATACACACCTTAAGTCCAC+GGG 0.616230 1_2:+46084519 None:intergenic
AAGTCCAATTCCAAGAACAA+TGG 0.641965 1_2:-46082544 Msa0072940:CDS
ACGGGTGAATCAGGCCAATG+AGG 0.642092 1_2:+46084537 None:intergenic
AGATGGAAGCCAGCTTATGG+CGG 0.651529 1_2:-46082775 Msa0072940:CDS
TTGTCAATGAGTGTAGGTGA+CGG 0.654799 1_2:+46081335 None:intergenic
CAATGTTGGTGATCACCTTG+AGG 0.661702 1_2:-46082486 Msa0072940:intron
AGTTGATAATGGACTTCACA+TGG 0.677332 1_2:-46085886 Msa0072940:CDS
AACAACATGATGGATGTGTG+TGG 0.705462 1_2:-46084720 Msa0072940:CDS
AGTTAGTGAAGATATCAAAG+GGG 0.743882 1_2:-46085952 Msa0072940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAATTATATAATA+TGG - chr1_2:46085431-46085450 Msa0072940:intron 0.0%
!! ATAAATAAATAACTTAGTTA+TGG - chr1_2:46081560-46081579 Msa0072940:intron 10.0%
!!! GATTAAAGTAAATAAATTTT+TGG - chr1_2:46081758-46081777 Msa0072940:intron 10.0%
!!! TAAAAGTTTTCAATTTTATA+AGG + chr1_2:46081801-46081820 None:intergenic 10.0%
!! AAAACTATTAAAATTAAGTA+AGG + chr1_2:46081832-46081851 None:intergenic 10.0%
!! TAATCCTATTAAAAAATTTA+GGG + chr1_2:46082215-46082234 None:intergenic 10.0%
!! TTAATCCTATTAAAAAATTT+AGG + chr1_2:46082216-46082235 None:intergenic 10.0%
!!! TAATATTTTGAACAATTATT+AGG + chr1_2:46082919-46082938 None:intergenic 10.0%
!! ATTGTATATATATACATTAA+GGG + chr1_2:46083325-46083344 None:intergenic 10.0%
!! AATTGTATATATATACATTA+AGG + chr1_2:46083326-46083345 None:intergenic 10.0%
!! CATTATATCAATAATAAATA+AGG - chr1_2:46083503-46083522 Msa0072940:intron 10.0%
!!! TTGATTTTTAATTAAAATGT+AGG - chr1_2:46084254-46084273 Msa0072940:intron 10.0%
!! TATAACAAGATAAATTATAT+TGG + chr1_2:46085244-46085263 None:intergenic 10.0%
!! GTTAAACCTTATAAAAATAT+CGG - chr1_2:46081582-46081601 Msa0072940:intron 15.0%
!!! ATTTAACCGATATTTTTATA+AGG + chr1_2:46081591-46081610 None:intergenic 15.0%
!!! TACATGTAAATATTTTTTGT+AGG + chr1_2:46081862-46081881 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr1_2:46081922-46081941 None:intergenic 15.0%
!! AGATAAAAACAACAAAAATT+TGG - chr1_2:46082055-46082074 Msa0072940:intron 15.0%
!!! TAATAAAGTCTCAATTTTAT+AGG - chr1_2:46082171-46082190 Msa0072940:intron 15.0%
!!! AATAAAGTCTCAATTTTATA+GGG - chr1_2:46082172-46082191 Msa0072940:intron 15.0%
!!! TTAACCCTAAATTTTTTAAT+AGG - chr1_2:46082208-46082227 Msa0072940:intron 15.0%
!!! TTGTGTATTATAATTTGTTT+AGG - chr1_2:46082853-46082872 Msa0072940:CDS 15.0%
!!! TGTGTATTATAATTTGTTTA+GGG - chr1_2:46082854-46082873 Msa0072940:CDS 15.0%
!!! TTTTTAAAGATACAAATTAG+TGG - chr1_2:46083696-46083715 Msa0072940:intron 15.0%
!!! ATGATATATGTAATCATTTT+TGG - chr1_2:46085097-46085116 Msa0072940:intron 15.0%
!!! TGATATATGTAATCATTTTT+GGG - chr1_2:46085098-46085117 Msa0072940:intron 15.0%
!!! ATTTTCTTCTTTATTCTTTT+GGG - chr1_2:46085138-46085157 Msa0072940:intron 15.0%
!! ATGTAATATTTAAATGTGTA+GGG + chr1_2:46085457-46085476 None:intergenic 15.0%
!! AATGTAATATTTAAATGTGT+AGG + chr1_2:46085458-46085477 None:intergenic 15.0%
!! ATAGAAAATCAATTTCTGAA+TGG - chr1_2:46081259-46081278 Msa0072940:CDS 20.0%
!! AAATCAGAGAAATCTATTAT+TGG + chr1_2:46081406-46081425 None:intergenic 20.0%
!! TAATTCCATAAATGCAAATA+AGG + chr1_2:46081681-46081700 None:intergenic 20.0%
!!! CATTTCAAAATTTGATTTCT+AGG + chr1_2:46082082-46082101 None:intergenic 20.0%
!!! ATTTTGAAATGACTTTTTTG+CGG - chr1_2:46082091-46082110 Msa0072940:intron 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG + chr1_2:46082199-46082218 None:intergenic 20.0%
!!! TTTTGTGTTTTGTTTGATAA+AGG - chr1_2:46082405-46082424 Msa0072940:intron 20.0%
!!! GTGTATTATAATTTGTTTAG+GGG - chr1_2:46082855-46082874 Msa0072940:CDS 20.0%
!! TAGAAAAGTCATAAATAAGT+CGG - chr1_2:46083103-46083122 Msa0072940:intron 20.0%
!! CAAAATTTAACCTAAAACAA+TGG - chr1_2:46083968-46083987 Msa0072940:intron 20.0%
!! ATTAGTAGATATACTTACAA+AGG + chr1_2:46084020-46084039 None:intergenic 20.0%
!! AGTATATCTACTAATTTGAT+AGG - chr1_2:46084025-46084044 Msa0072940:intron 20.0%
!! TCCCTAAAAAAATTGAATAT+AGG - chr1_2:46084093-46084112 Msa0072940:intron 20.0%
!!! CCCTATATTCAATTTTTTTA+GGG + chr1_2:46084097-46084116 None:intergenic 20.0%
!! CCCTAAAAAAATTGAATATA+GGG - chr1_2:46084094-46084113 Msa0072940:intron 20.0%
!!! TCCCTATATTCAATTTTTTT+AGG + chr1_2:46084098-46084117 None:intergenic 20.0%
!! ATACTATATTGTAATTGTTG+AGG + chr1_2:46084221-46084240 None:intergenic 20.0%
!! TTAATTAAAATGTAGGAAAG+TGG - chr1_2:46084261-46084280 Msa0072940:intron 20.0%
!! TTAAACTTACAACTAACTAA+TGG + chr1_2:46084734-46084753 None:intergenic 20.0%
!! TTAGTTAGTTGTAAGTTTAA+TGG - chr1_2:46084734-46084753 Msa0072940:CDS 20.0%
!! GTAATCAGATATCATATAAT+TGG - chr1_2:46084844-46084863 Msa0072940:intron 20.0%
!!! TTAGTTTTGTCTTAACTAAT+AGG - chr1_2:46085012-46085031 Msa0072940:intron 20.0%
!! TCTCTATAAATAAATCGTTA+TGG + chr1_2:46085076-46085095 None:intergenic 20.0%
!!! CATTTTCTTCTTTATTCTTT+TGG - chr1_2:46085137-46085156 Msa0072940:intron 20.0%
!!! ATATTGGTACAAACTTATTT+TGG + chr1_2:46085228-46085247 None:intergenic 20.0%
!! TCTTAAAAAATATGTGTAGA+TGG + chr1_2:46085361-46085380 None:intergenic 20.0%
! ATAGTTAGTGAAGATATCAA+AGG - chr1_2:46081226-46081245 Msa0072940:CDS 25.0%
! TAGTTAGTGAAGATATCAAA+GGG - chr1_2:46081227-46081246 Msa0072940:CDS 25.0%
!! AATCTATTATTGGTAGTTGT+AGG + chr1_2:46081396-46081415 None:intergenic 25.0%
!! ATAGATTTCTCTGATTTGAT+TGG - chr1_2:46081409-46081428 Msa0072940:CDS 25.0%
!! GTTAGTATATGAAAGTTTTG+TGG + chr1_2:46081511-46081530 None:intergenic 25.0%
!! TTAGTCCTTATTTGCATTTA+TGG - chr1_2:46081673-46081692 Msa0072940:intron 25.0%
!!! AAAATGAGTGTTTTAGTTCT+TGG + chr1_2:46081715-46081734 None:intergenic 25.0%
!!! TTTTTGGGTAAACATGTTTT+TGG - chr1_2:46081774-46081793 Msa0072940:intron 25.0%
!! CAAGTTTAGAACATTACAAA+AGG - chr1_2:46081956-46081975 Msa0072940:intron 25.0%
!!! ATTTTTTGATCTTCCATTTG+AGG - chr1_2:46082486-46082505 Msa0072940:intron 25.0%
! CATAATCATATAATAAGTCC+TGG - chr1_2:46082798-46082817 Msa0072940:CDS 25.0%
! TATTAGGTATCCATTTACAA+TGG + chr1_2:46082903-46082922 None:intergenic 25.0%
! AATCAACCAACTTTCTTAAT+TGG - chr1_2:46082960-46082979 Msa0072940:intron 25.0%
! TTTGTACCAATTAAGAAAGT+TGG + chr1_2:46082969-46082988 None:intergenic 25.0%
! ACACAATAAAAGTAGAAGTT+GGG + chr1_2:46083084-46083103 None:intergenic 25.0%
! TACACAATAAAAGTAGAAGT+TGG + chr1_2:46083085-46083104 None:intergenic 25.0%
! AGAAAAGTCATAAATAAGTC+GGG - chr1_2:46083104-46083123 Msa0072940:intron 25.0%
! AATTATTTAGAGGACACAAT+TGG + chr1_2:46083463-46083482 None:intergenic 25.0%
!!! AAACGACACGTATTTTAAAA+AGG - chr1_2:46083592-46083611 Msa0072940:intron 25.0%
!! ACAAATTAGTGGTCTTAATT+AGG - chr1_2:46083707-46083726 Msa0072940:intron 25.0%
! ATTAGGTTATGTTTGGTAAA+AGG - chr1_2:46083724-46083743 Msa0072940:intron 25.0%
!! TGTGAAGTTTGAAATCTTAA+AGG - chr1_2:46083764-46083783 Msa0072940:intron 25.0%
!!! AAACCAAACACTTATTTCTA+AGG - chr1_2:46084302-46084321 Msa0072940:intron 25.0%
! TAACCTTAGAAATAAGTGTT+TGG + chr1_2:46084308-46084327 None:intergenic 25.0%
!!! ACACTTATTTCTAAGGTTAA+TGG - chr1_2:46084309-46084328 Msa0072940:intron 25.0%
! GGACAATATTATCAAAGAAT+TGG - chr1_2:46084381-46084400 Msa0072940:intron 25.0%
! ATTATCAAAGAATTGGAAGA+TGG - chr1_2:46084388-46084407 Msa0072940:intron 25.0%
! ACAACGAATGCATTATTAAT+AGG + chr1_2:46084674-46084693 None:intergenic 25.0%
! CATAAAACAATAAACTCTCA+TGG - chr1_2:46084903-46084922 Msa0072940:intron 25.0%
! ATGAAATTCTGATATTGCAA+TGG - chr1_2:46084981-46085000 Msa0072940:intron 25.0%
!!! TGCTTTGTTGTTAGAAATTT+TGG + chr1_2:46085514-46085533 None:intergenic 25.0%
! ATCTTACCATTGAGTTAAAA+TGG - chr1_2:46085539-46085558 Msa0072940:intron 25.0%
! GAAGAATTAGCAACTTAAAT+AGG + chr1_2:46085691-46085710 None:intergenic 25.0%
AGTTAGTGAAGATATCAAAG+GGG - chr1_2:46081228-46081247 Msa0072940:CDS 30.0%
! AAAGAAATTTTGTCCTAGCA+GGG + chr1_2:46081893-46081912 None:intergenic 30.0%
! TAAAGAAATTTTGTCCTAGC+AGG + chr1_2:46081894-46081913 None:intergenic 30.0%
!!! TGTGTTTTGTTTGATAAAGG+TGG - chr1_2:46082408-46082427 Msa0072940:intron 30.0%
AGATGTTATCAACAACATGA+TGG - chr1_2:46082450-46082469 Msa0072940:intron 30.0%
TAATCAATTCAATCTCTACG+TGG - chr1_2:46082715-46082734 Msa0072940:intron 30.0%
CTCTTCATTAAATTAGTACC+AGG + chr1_2:46082819-46082838 None:intergenic 30.0%
TTGGTACAAATTTGTCAATG+AGG - chr1_2:46082979-46082998 Msa0072940:intron 30.0%
! AGAAGCTACTTTAAAAGAGA+AGG + chr1_2:46083043-46083062 None:intergenic 30.0%
TTGTTAGCATTTCCATACTT+AGG + chr1_2:46083140-46083159 None:intergenic 30.0%
AACAAATGCAGCACTTATTA+AGG - chr1_2:46083155-46083174 Msa0072940:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_2:46083370-46083389 None:intergenic 30.0%
! AGTGTCACTCAATTATTTAG+AGG + chr1_2:46083473-46083492 None:intergenic 30.0%
GGTCTTAATTAGGTTATGTT+TGG - chr1_2:46083717-46083736 Msa0072940:intron 30.0%
TTTCTTCTTCTACTAACAGA+TGG + chr1_2:46083860-46083879 None:intergenic 30.0%
! TTCTCTTTTCTATATCTCTC+TGG - chr1_2:46084159-46084178 Msa0072940:intron 30.0%
! TCTCTTTTCTATATCTCTCT+GGG - chr1_2:46084160-46084179 Msa0072940:intron 30.0%
ATTAAAATGTAGGAAAGTGG+CGG - chr1_2:46084264-46084283 Msa0072940:intron 30.0%
TATACCTAAACTCTCTACTA+TGG + chr1_2:46084338-46084357 None:intergenic 30.0%
! ATTGTCCTTTTCTTCTTTGT+TGG + chr1_2:46084368-46084387 None:intergenic 30.0%
!!! TCATTTTTGGGACAACTTTT+AGG - chr1_2:46085110-46085129 Msa0072940:intron 30.0%
GGCAAGAAAAGTTTCAAAAT+CGG + chr1_2:46085897-46085916 None:intergenic 30.0%
!! AGTTGATAATGGACTTCACA+TGG - chr1_2:46081294-46081313 Msa0072940:CDS 35.0%
!! GGAGGAAGTATGTACTTTTT+AGG + chr1_2:46081322-46081341 None:intergenic 35.0%
GAATCTTCTGTATTCTTAGC+AGG + chr1_2:46081355-46081374 None:intergenic 35.0%
!!! TGGTAGTTGTAGGTTTTGTT+TGG + chr1_2:46081386-46081405 None:intergenic 35.0%
! CTGATTTGATTGGTCCAAAT+AGG - chr1_2:46081419-46081438 Msa0072940:CDS 35.0%
AGCTAATGACTGAAGAACTT+GGG + chr1_2:46081446-46081465 None:intergenic 35.0%
TAGCTAATGACTGAAGAACT+TGG + chr1_2:46081447-46081466 None:intergenic 35.0%
CATTAGCTAATGCTTGTGAA+CGG - chr1_2:46081458-46081477 Msa0072940:intron 35.0%
!!! TGTTTTAGTTCTTGGCTTCT+TGG + chr1_2:46081707-46081726 None:intergenic 35.0%
!! ATGTAATTTTAGTCCCTGCT+AGG - chr1_2:46081877-46081896 Msa0072940:intron 35.0%
TTGATAAAGGTGGTAAACCA+TGG - chr1_2:46082418-46082437 Msa0072940:intron 35.0%
!! TAACATCTTCTGAGATTCCA+TGG + chr1_2:46082438-46082457 None:intergenic 35.0%
TACTTACCTCTTTCCTCAAA+TGG + chr1_2:46082502-46082521 None:intergenic 35.0%
! CAAAAGACAAAGTGTTCTGT+TGG - chr1_2:46082575-46082594 Msa0072940:intron 35.0%
AAATACACACCTTAAGTCCA+CGG + chr1_2:46082665-46082684 None:intergenic 35.0%
GATAGTTGGTCCATTGTAAA+TGG - chr1_2:46082890-46082909 Msa0072940:CDS 35.0%
CTTCTATGCCTCAAAAAAGT+TGG - chr1_2:46083058-46083077 Msa0072940:intron 35.0%
AAATGTTAAAGAATGCCCGT+AGG + chr1_2:46083302-46083321 None:intergenic 35.0%
!! ACCTAAAACAATGGTTTTGC+TGG - chr1_2:46083977-46083996 Msa0072940:intron 35.0%
TGAAGCCAACAAAGAAGAAA+AGG - chr1_2:46084360-46084379 Msa0072940:intron 35.0%
AAGTCCAATTCCAAGAACAA+TGG - chr1_2:46084636-46084655 Msa0072940:CDS 35.0%
TGAACCATTGTTCTTGGAAT+TGG + chr1_2:46084643-46084662 None:intergenic 35.0%
ATTCCAAGAACAATGGTTCA+CGG - chr1_2:46084643-46084662 Msa0072940:CDS 35.0%
AATGCATTCGTTGTCAATGT+TGG - chr1_2:46084680-46084699 Msa0072940:CDS 35.0%
AAAACACTAGAGAGAGAAAG+AGG - chr1_2:46085163-46085182 Msa0072940:intron 35.0%
AAACACTAGAGAGAGAAAGA+GGG - chr1_2:46085164-46085183 Msa0072940:intron 35.0%
ACCATTGAGTTAAAATGGCA+TGG - chr1_2:46085544-46085563 Msa0072940:intron 35.0%
!!! TCCATGCCATTTTAACTCAA+TGG + chr1_2:46085548-46085567 None:intergenic 35.0%
!!! GCTTCTCAGATTTTTAGCAA+CGG - chr1_2:46085722-46085741 Msa0072940:intron 35.0%
!!! CTTCTCAGATTTTTAGCAAC+GGG - chr1_2:46085723-46085742 Msa0072940:intron 35.0%
! AATACAAGAGTGTGCTACAT+AGG - chr1_2:46085747-46085766 Msa0072940:intron 35.0%
! ATACAAGAGTGTGCTACATA+GGG - chr1_2:46085748-46085767 Msa0072940:intron 35.0%
AATGCTATGCAATGAAGCAA+TGG + chr1_2:46085804-46085823 None:intergenic 35.0%
! AACCAAGAGAAAGAGTTTTC+TGG - chr1_2:46085934-46085953 Msa0072940:CDS 35.0%
!! GTCAAGCAGCTAGTTGATAA+TGG - chr1_2:46081283-46081302 Msa0072940:CDS 40.0%
GCTAATGACTGAAGAACTTG+GGG + chr1_2:46081445-46081464 None:intergenic 40.0%
! TGAACGGTATGGAATTTTCC+AGG - chr1_2:46081474-46081493 Msa0072940:intron 40.0%
!! AACAACATGATGGATGTGTG+TGG - chr1_2:46082460-46082479 Msa0072940:intron 40.0%
GATCTTCCATTTGAGGAAAG+AGG - chr1_2:46082493-46082512 Msa0072940:CDS 40.0%
GAAGATAATCAGGCAAAGGA+TGG + chr1_2:46082624-46082643 None:intergenic 40.0%
TGAGGAAGATAATCAGGCAA+AGG + chr1_2:46082628-46082647 None:intergenic 40.0%
TGCCTGATTATCTTCCTCAT+TGG - chr1_2:46082629-46082648 Msa0072940:intron 40.0%
AATACACACCTTAAGTCCAC+GGG + chr1_2:46082664-46082683 None:intergenic 40.0%
TGTTTAGGGGACAAGTTCTA+CGG - chr1_2:46082868-46082887 Msa0072940:CDS 40.0%
! TGTCAATGAGGTCTTATACC+CGG - chr1_2:46082991-46083010 Msa0072940:intron 40.0%
TACCACTACTTTCCATTTCC+CGG + chr1_2:46083013-46083032 None:intergenic 40.0%
!!! AAGTTGGGCCAACTTTTTTG+AGG + chr1_2:46083069-46083088 None:intergenic 40.0%
! GCCAGCAAAACCATTGTTTT+AGG + chr1_2:46083981-46084000 None:intergenic 40.0%
GAAGCCATAGTAGAGAGTTT+AGG - chr1_2:46084331-46084350 Msa0072940:intron 40.0%
AAAAATTTGCCGCCATAAGC+TGG + chr1_2:46084417-46084436 None:intergenic 40.0%
AATCCATAGTCAGAATGAGG+GGG + chr1_2:46084478-46084497 None:intergenic 40.0%
GAATCCATAGTCAGAATGAG+GGG + chr1_2:46084479-46084498 None:intergenic 40.0%
GGAATCCATAGTCAGAATGA+GGG + chr1_2:46084480-46084499 None:intergenic 40.0%
GAATATCCATCCATACCTCA+AGG + chr1_2:46084712-46084731 None:intergenic 40.0%
GGTCACTAATTGTAGATGAC+AGG + chr1_2:46085055-46085074 None:intergenic 40.0%
TTGTCAATGAGTGTAGGTGA+CGG + chr1_2:46085848-46085867 None:intergenic 40.0%
!! TTGGCTTTGTCAATGAGTGT+AGG + chr1_2:46085854-46085873 None:intergenic 40.0%
! GGTTTCGTTGGTTGAAATGT+GGG + chr1_2:46085918-46085937 None:intergenic 40.0%
! TGGTTTCGTTGGTTGAAATG+TGG + chr1_2:46085919-46085938 None:intergenic 40.0%
ACTCTTTCTCTTGGTTTCGT+TGG + chr1_2:46085930-46085949 None:intergenic 40.0%
CTCCAGAAAACTCTTTCTCT+TGG + chr1_2:46085939-46085958 None:intergenic 40.0%
!!! GAAAGAGTTTTCTGGAGTCT+AGG - chr1_2:46085942-46085961 Msa0072940:CDS 40.0%
GAAGATATCAAAGGGGTCGA+TGG - chr1_2:46081235-46081254 Msa0072940:CDS 45.0%
TTCTTAGCAGGACGTTCAGA+AGG + chr1_2:46081343-46081362 None:intergenic 45.0%
TGAAGAACTTGGGGCCTATT+TGG + chr1_2:46081436-46081455 None:intergenic 45.0%
GCTAATGCTTGTGAACGGTA+TGG - chr1_2:46081463-46081482 Msa0072940:intron 45.0%
TTTGTGGTTGATTGCTCACC+TGG + chr1_2:46081495-46081514 None:intergenic 45.0%
ATGAGAGCAGCAGTTCGATA+TGG - chr1_2:46082535-46082554 Msa0072940:CDS 45.0%
GGCCAATGAGGAAGATAATC+AGG + chr1_2:46082634-46082653 None:intergenic 45.0%
GGACAAGTTCTACGGATAGT+TGG - chr1_2:46082876-46082895 Msa0072940:CDS 45.0%
! GTCAATGAGGTCTTATACCC+GGG - chr1_2:46082992-46083011 Msa0072940:intron 45.0%
ACCACTACTTTCCATTTCCC+GGG + chr1_2:46083012-46083031 None:intergenic 45.0%
GGTCAAACGCTACCTAAGTA+TGG - chr1_2:46083125-46083144 Msa0072940:intron 45.0%
! CCGTAGGACATTGGTTAAGA+GGG + chr1_2:46083286-46083305 None:intergenic 45.0%
CCCTCTTAACCAATGTCCTA+CGG - chr1_2:46083283-46083302 Msa0072940:intron 45.0%
CCTCTTAACCAATGTCCTAC+GGG - chr1_2:46083284-46083303 Msa0072940:intron 45.0%
AAAGAATGCCCGTAGGACAT+TGG + chr1_2:46083295-46083314 None:intergenic 45.0%
CTCATTGTCACAGATGTGCT+TGG + chr1_2:46083813-46083832 None:intergenic 45.0%
! TGCTGGCCTGATGATTCATA+CGG - chr1_2:46083994-46084013 Msa0072940:intron 45.0%
CAAAGGCCGTATGAATCATC+AGG + chr1_2:46084003-46084022 None:intergenic 45.0%
! GTGTTTGGTTTCTTCTGCGT+AGG + chr1_2:46084293-46084312 None:intergenic 45.0%
CTTCTACCTCATCTTGGAGA+AGG + chr1_2:46084610-46084629 None:intergenic 45.0%
CTTCTCCAAGATGAGGTAGA+AGG - chr1_2:46084608-46084627 Msa0072940:CDS 45.0%
GCAAACCTTCTACCTCATCT+TGG + chr1_2:46084616-46084635 None:intergenic 45.0%
GAACCGTGAACCATTGTTCT+TGG + chr1_2:46084649-46084668 None:intergenic 45.0%
!! CAATGTTGGTGATCACCTTG+AGG - chr1_2:46084694-46084713 Msa0072940:CDS 45.0%
! TTGGTGATCACCTTGAGGTA+TGG - chr1_2:46084699-46084718 Msa0072940:CDS 45.0%
TGATCACCTTGAGGTATGGA+TGG - chr1_2:46084703-46084722 Msa0072940:CDS 45.0%
!! TGTATAAATTAATAAAAATA+TGG - chr1_2:46081736-46081755 Msa0072940:intron 5.0%
!!! ATTAAAGTAAATAAATTTTT+GGG - chr1_2:46081759-46081778 Msa0072940:intron 5.0%
!!! ATTATTTATATTTTTATGAT+AGG + chr1_2:46085331-46085350 None:intergenic 5.0%
!! TTTATTTCATATAAAATTTA+TGG + chr1_2:46085399-46085418 None:intergenic 5.0%
TTAGCAGGACGTTCAGAAGG+AGG + chr1_2:46081340-46081359 None:intergenic 50.0%
CTTAAGTCCACGGGTGAATC+AGG + chr1_2:46082655-46082674 None:intergenic 50.0%
CTGATTCACCCGTGGACTTA+AGG - chr1_2:46082653-46082672 Msa0072940:intron 50.0%
! GAGGTCTTATACCCGGGAAA+TGG - chr1_2:46082998-46083017 Msa0072940:intron 50.0%
ACCCGGGAAATGGAAAGTAG+TGG - chr1_2:46083008-46083027 Msa0072940:intron 50.0%
! CCCGTAGGACATTGGTTAAG+AGG + chr1_2:46083287-46083306 None:intergenic 50.0%
GGAAGATGGAAGCCAGCTTA+TGG - chr1_2:46084402-46084421 Msa0072940:intron 50.0%
AGATGGAAGCCAGCTTATGG+CGG - chr1_2:46084405-46084424 Msa0072940:intron 50.0%
!! GTTAGGTCAGGTTGAGGACA+TGG + chr1_2:46084445-46084464 None:intergenic 50.0%
CTCAACCTGACCTAACCCTA+GGG - chr1_2:46084449-46084468 Msa0072940:intron 50.0%
ATGCCCCCTCATTCTGACTA+TGG - chr1_2:46084472-46084491 Msa0072940:intron 50.0%
CACACTCCTTCTCCAAGATG+AGG - chr1_2:46084601-46084620 Msa0072940:CDS 50.0%
! GTCTGCGTAACGTTTGGGAT+TGG + chr1_2:46085873-46085892 None:intergenic 50.0%
! TCGGTGTCTGCGTAACGTTT+GGG + chr1_2:46085878-46085897 None:intergenic 50.0%
! ATCGGTGTCTGCGTAACGTT+TGG + chr1_2:46085879-46085898 None:intergenic 50.0%
ACGGGTGAATCAGGCCAATG+AGG + chr1_2:46082646-46082665 None:intergenic 55.0%
! TCATTGGCCTGATTCACCCG+TGG - chr1_2:46082645-46082664 Msa0072940:intron 55.0%
!! AGGTCAGGTTGAGGACATGG+TGG + chr1_2:46084442-46084461 None:intergenic 55.0%
! CCTAGGGTTAGGTCAGGTTG+AGG + chr1_2:46084451-46084470 None:intergenic 55.0%
CCTCAACCTGACCTAACCCT+AGG - chr1_2:46084448-46084467 Msa0072940:intron 55.0%
!! AGAATGAGGGGGCATCCCTA+GGG + chr1_2:46084467-46084486 None:intergenic 55.0%
GGCATCCCTAGGGTTAGGTC+AGG + chr1_2:46084457-46084476 None:intergenic 60.0%
!! CAGAATGAGGGGGCATCCCT+AGG + chr1_2:46084468-46084487 None:intergenic 60.0%
!! GAGGGGGCATCCCTAGGGTT+AGG + chr1_2:46084462-46084481 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 46081208 46085994 46081208 ID=Msa0072940;Name=Msa0072940
chr1_2 mRNA 46081208 46085994 46081208 ID=Msa0072940-mRNA-1;Parent=Msa0072940;Name=Msa0072940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.75|0.8|5|0|335
chr1_2 exon 46085755 46085994 46085755 ID=Msa0072940-mRNA-1:exon:14005;Parent=Msa0072940-mRNA-1
chr1_2 exon 46084528 46084775 46084528 ID=Msa0072940-mRNA-1:exon:14004;Parent=Msa0072940-mRNA-1
chr1_2 exon 46082757 46082926 46082757 ID=Msa0072940-mRNA-1:exon:14003;Parent=Msa0072940-mRNA-1
chr1_2 exon 46082487 46082572 46082487 ID=Msa0072940-mRNA-1:exon:14002;Parent=Msa0072940-mRNA-1
chr1_2 exon 46081208 46081471 46081208 ID=Msa0072940-mRNA-1:exon:14001;Parent=Msa0072940-mRNA-1
chr1_2 CDS 46085755 46085994 46085755 ID=Msa0072940-mRNA-1:cds;Parent=Msa0072940-mRNA-1
chr1_2 CDS 46084528 46084775 46084528 ID=Msa0072940-mRNA-1:cds;Parent=Msa0072940-mRNA-1
chr1_2 CDS 46082757 46082926 46082757 ID=Msa0072940-mRNA-1:cds;Parent=Msa0072940-mRNA-1
chr1_2 CDS 46082487 46082572 46082487 ID=Msa0072940-mRNA-1:cds;Parent=Msa0072940-mRNA-1
chr1_2 CDS 46081208 46081471 46081208 ID=Msa0072940-mRNA-1:cds;Parent=Msa0072940-mRNA-1
Gene Sequence

>Msa0072940

ATGTCAGCTGGAATGGCAATAGTTAGTGAAGATATCAAAGGGGTCGATGGTATAGAAAATCAATTTCTGAATGGAGTCAAGCAGCTAGTTGATAATGGACTTCACATGGTACCTAAAAAGTACATACTTCCTCCTTCTGAACGTCCTGCTAAGAATACAGAAGATTCAAATTTTGCCAAACAAAACCTACAACTACCAATAATAGATTTCTCTGATTTGATTGGTCCAAATAGGCCCCAAGTGGTAAACCATGGAATCTCAGAAGATGTTATCAACAACATGATGGATGTGTGTGGAAGATTTTTTGATCTTCCATTTGAGGAAAGAGGTAAGTACATGACATCTGATATGAGAGCAGCAGTTCGATATGGAACAAGCTTTAGTCAAACAAAAGACAAAGTGTTCTGTTGGAGAGATTTCTTGAAACTCATCTGCCATCCTTTGCCTGATTATCTTCCTCATTGGCCTGATTCACCCGTGGACTTAAGGAAAGTGGCGGCTACCTACGCAGAAGAAACCAAACACTTATTTCTAAGGTTAATGGAAGCCATAGTAGAGAGTTTAGGTATAGTTGAAGCCAACAAAGAAGAAAAGGACAATATTATCAAAGAATTGGAAGATGGAAGCCAGCTTATGGCGGCAAATTTTTATCCACCATGTTTGCAAGTCCAATTCCAAGAACAATGGTTCACGGTTCAACCTATTAATAATGCATTCGTTGTCAATGTTGGTGATCACCTTGAGATTTTTAGCAACGGGAAATACAAGAGTGTGCTACATAGGGTTCTAGTGAATTCAAGTAAGCGTAGAAGATCCATTGCTTCATTGCATAGCATTTCGTTCAACAGTACTGTGAGACCGTCACCTACACTCATTGACAAAGCCAATCCCAAACGTTACGCAGACACCGATTTTGAAACTTTTCTTGCCCACATTTCAACCAACGAAACCAAGAGAAAGAGTTTTCTGGAGTCTAGGAAATTGACTTCTATCTCAGTACTTGACTAA

Protein sequence

>Msa0072940

MSAGMAIVSEDIKGVDGIENQFLNGVKQLVDNGLHMVPKKYILPPSERPAKNTEDSNFAKQNLQLPIIDFSDLIGPNRPQVVNHGISEDVINNMMDVCGRFFDLPFEERGKYMTSDMRAAVRYGTSFSQTKDKVFCWRDFLKLICHPLPDYLPHWPDSPVDLRKVAATYAEETKHLFLRLMEAIVESLGIVEANKEEKDNIIKELEDGSQLMAANFYPPCLQVQFQEQWFTVQPINNAFVVNVGDHLEIFSNGKYKSVLHRVLVNSSKRRRSIASLHSISFNSTVRPSPTLIDKANPKRYADTDFETFLAHISTNETKRKSFLESRKLTSISVLD*