AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269180 MtrunA17_Chr1g0187471 99.138 116 1 0 11 126 1 116 2.47e-76 227
Msa0269180 MtrunA17_Chr1g0187471 94.690 113 6 0 127 239 2 114 1.43e-70 212
Msa0269180 MtrunA17_Chr4g0067861 94.828 116 6 0 11 126 1 116 4.43e-75 224
Msa0269180 MtrunA17_Chr4g0067861 90.265 113 11 0 127 239 2 114 2.42e-69 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269180 AT2G20450.1 87.069 116 15 0 11 126 1 116 1.15e-65 200
Msa0269180 AT2G20450.1 83.036 112 19 0 128 239 3 114 7.72e-60 185
Msa0269180 AT4G27090.1 85.345 116 17 0 11 126 1 116 4.65e-65 199
Msa0269180 AT4G27090.1 81.250 112 21 0 128 239 3 114 3.22e-59 184

Find 99 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCTATCAAAATCATTA+AGG 0.237759 2_2:+70567058 None:intergenic
TGAACCTATCAAAATCATTA+AGG 0.237759 2_2:+70570938 None:intergenic
TATGCAATCAAAAGCATAAA+TGG 0.243731 2_2:+70566169 None:intergenic
TTGACGAGATCCTTCTTCTT+AGG 0.248112 2_2:+70571165 None:intergenic
TTGACGAGATCCTTCTTCTT+AGG 0.250131 2_2:+70567294 None:intergenic
GTCAACTATGGCCCAGATTA+TGG 0.258615 2_2:-70567541 Msa0269180:CDS
GTCAACTATGGCCCAGATTA+TGG 0.258615 2_2:-70571413 Msa0269180:CDS
GATTATGTTGGCCAAGATTA+AGG 0.263288 2_2:-70570914 Msa0269180:intron
CATGGGCAATAACATTTCTT+TGG 0.268425 2_2:+70565674 None:intergenic
CTGAATTGTCCTAGACTTAG+AGG 0.278421 2_2:+70565857 None:intergenic
ACAACGAGCTTGCCATAATC+TGG 0.305463 2_2:+70567529 None:intergenic
ACAACGAGCTTGCCATAATC+TGG 0.305463 2_2:+70571401 None:intergenic
GACATTCATACAATGTTTAC+AGG 0.311357 2_2:+70565770 None:intergenic
GCTAGTGTTATATTCATAAA+TGG 0.324121 2_2:-70565697 Msa0269180:three_prime_UTR
GAAAATGGGTTACCCTAGTT+TGG 0.329740 2_2:+70567488 None:intergenic
GAAAATGGGTTACCCTAGTT+TGG 0.329740 2_2:+70571360 None:intergenic
GAAAGCCTCTTGAAATTGAT+TGG 0.348542 2_2:+70567351 None:intergenic
GAAAGCCTCTTGAAATTGAT+TGG 0.348542 2_2:+70571222 None:intergenic
AATGTCCCTTGTGGACATTC+TGG 0.368012 2_2:-70565753 Msa0269180:three_prime_UTR
CTAAAATTATACCTTAATCT+TGG 0.381940 2_2:+70570903 None:intergenic
ACGAATATCAACAATGTTCA+TGG 0.386857 2_2:+70565656 None:intergenic
GTGCCTCAGAAAATCGAAAA+TGG 0.394255 2_2:-70571556 Msa0269180:intron
GACTGTTAACATGTAACTTA+CGG 0.428959 2_2:+70565821 None:intergenic
TGCAGAGGGCTGGTGTTGTT+AGG 0.431787 2_2:-70566310 Msa0269180:intron
TTGATGTTATCGACCAAACT+AGG 0.433748 2_2:-70567501 Msa0269180:CDS
TTGATGTTATCGACCAAACT+AGG 0.433748 2_2:-70571373 Msa0269180:CDS
AAATAAATCTCATAAATAGA+AGG 0.437678 2_2:+70566206 None:intergenic
GAACCTATCAAAATCATTAA+GGG 0.440003 2_2:+70567059 None:intergenic
GAACCTATCAAAATCATTAA+GGG 0.440003 2_2:+70570939 None:intergenic
ACTGTTAACATGTAACTTAC+GGG 0.446737 2_2:+70565822 None:intergenic
GAGTATTGCAACATTTGTAA+TGG 0.447120 2_2:+70565946 None:intergenic
AACAATCAATTTCCTTCCCC+AGG 0.448020 2_2:+70567098 None:intergenic
AACAATCAATTTCCTTCCCC+AGG 0.448020 2_2:+70570978 None:intergenic
ATTGGAGCTCTCTCCATGTC+AGG 0.463357 2_2:+70567369 None:intergenic
ATTGGAGCTCTCTCCATGTC+AGG 0.463357 2_2:+70571240 None:intergenic
AATTCTACCTGCAGCTTCCA+TGG 0.474519 2_2:+70571140 None:intergenic
AGAGTTGCACTTGTCAACTA+TGG 0.476767 2_2:-70567553 Msa0269180:CDS
AGAGTTGCACTTGTCAACTA+TGG 0.476767 2_2:-70571425 Msa0269180:CDS
ACCCACTCTCTCTGCCTTGA+GGG 0.478423 2_2:+70565903 None:intergenic
GCTGAGGAAGACCGCAGCTT+AGG 0.479614 2_2:-70566273 Msa0269180:exon
TCTTTGCTCCCTCTAAGTCT+AGG 0.480015 2_2:-70565866 Msa0269180:three_prime_UTR
TTTCAATTTGTGCAGAGGGC+TGG 0.483986 2_2:-70566320 Msa0269180:intron
GAAGGATCTCGTCAAGGCTA+TGG 0.488672 2_2:-70567286 Msa0269180:CDS
GGAAATTGATTGTTAAGAAG+AGG 0.493248 2_2:-70567089 Msa0269180:CDS
GGAAATTGATTGTTAAGAAG+AGG 0.493248 2_2:-70570969 Msa0269180:CDS
AATCTGTTAGAAGTTTCAAA+TGG 0.493350 2_2:-70566038 Msa0269180:three_prime_UTR
TTCAAGAGGTTTGTTGAGAT+CGG 0.494020 2_2:-70567577 Msa0269180:CDS
TTCAAGAGGTTTGTTGAGAT+CGG 0.494020 2_2:-70571449 Msa0269180:CDS
GCCTTGAGGGTAACAAGTGT+TGG 0.498316 2_2:+70565916 None:intergenic
CAAGAGAGTTCCTAAGAAGA+AGG 0.504705 2_2:-70567304 Msa0269180:CDS
CAAGAGAGTTCCTAAGAAGA+AGG 0.504705 2_2:-70571175 Msa0269180:CDS
TATGATACCAAGTCATGAAT+CGG 0.522601 2_2:+70565969 None:intergenic
TACAACTCCGATTCATGACT+TGG 0.533448 2_2:-70565976 Msa0269180:three_prime_UTR
ACAAGTGGGAGAAGAGCTCC+TGG 0.539704 2_2:-70567116 Msa0269180:CDS
ACAAGTGGGAGAAGAGCTCC+TGG 0.539704 2_2:-70570996 Msa0269180:CDS
AATTGATTGTTAAGAAGAGG+AGG 0.539799 2_2:-70567086 Msa0269180:CDS
AATTGATTGTTAAGAAGAGG+AGG 0.539799 2_2:-70570966 Msa0269180:CDS
TGATAGGTTCAAGATTATGT+TGG 0.542816 2_2:-70570926 Msa0269180:CDS
ACACTAGCTTATGCATATCA+TGG 0.544925 2_2:+70565712 None:intergenic
CAACGAGCTTGCCATAATCT+GGG 0.548769 2_2:+70567530 None:intergenic
CAACGAGCTTGCCATAATCT+GGG 0.548769 2_2:+70571402 None:intergenic
CGAATATCAACAATGTTCAT+GGG 0.556230 2_2:+70565657 None:intergenic
TGATAGATGTGAAGAACAAG+TGG 0.562094 2_2:-70567131 Msa0269180:intron
TGATAGATGTGAAGAACAAG+TGG 0.562094 2_2:-70571011 Msa0269180:intron
TACCCTCAAGGCAGAGAGAG+TGG 0.562638 2_2:-70565905 Msa0269180:three_prime_UTR
GTCAAAGCCATGGAAGCTGC+AGG 0.563654 2_2:-70571147 Msa0269180:intron
ATCTCAACAAACCTCTTGAA+CGG 0.571035 2_2:+70567580 None:intergenic
ATCTCAACAAACCTCTTGAA+CGG 0.571035 2_2:+70571452 None:intergenic
GAAGGATCTCGTCAAAGCCA+TGG 0.572972 2_2:-70571157 Msa0269180:CDS
TAGCTTATGCATATCATGGT+TGG 0.577923 2_2:+70565716 None:intergenic
GAGCTCCAATCAATTTCAAG+AGG 0.584468 2_2:-70567356 Msa0269180:CDS
GAGCTCCAATCAATTTCAAG+AGG 0.584468 2_2:-70571227 Msa0269180:CDS
ATCAAGCAAGAAAGAGCTAG+AGG 0.585153 2_2:-70566115 Msa0269180:three_prime_UTR
GGGAGAAGAGCTCCTGGGGA+AGG 0.586483 2_2:-70567110 Msa0269180:CDS
GGGAGAAGAGCTCCTGGGGA+AGG 0.586483 2_2:-70570990 Msa0269180:CDS
GTCAAGGCTATGGAAGCTGC+AGG 0.587422 2_2:-70567276 Msa0269180:intron
TCTTTGTTCAGCCGTTCAAG+AGG 0.591089 2_2:-70567591 Msa0269180:intron
TCTTTGTTCAGCCGTTCAAG+AGG 0.591089 2_2:-70571463 Msa0269180:intron
AACCCACTCTCTCTGCCTTG+AGG 0.593852 2_2:+70565902 None:intergenic
TCTTGTTGATGCACCTGACA+TGG 0.596389 2_2:-70567382 Msa0269180:CDS
TCTTGTTGATGCACCTGACA+TGG 0.596389 2_2:-70571253 Msa0269180:CDS
ATTGATTGTTAAGAAGAGGA+GGG 0.602431 2_2:-70567085 Msa0269180:CDS
ATTGATTGTTAAGAAGAGGA+GGG 0.602431 2_2:-70570965 Msa0269180:CDS
ACCCTCAAGGCAGAGAGAGT+GGG 0.605053 2_2:-70565904 Msa0269180:three_prime_UTR
TCCAACACTTGTTACCCTCA+AGG 0.605743 2_2:-70565917 Msa0269180:three_prime_UTR
TGATGTTATCGACCAAACTA+GGG 0.607546 2_2:-70567500 Msa0269180:intron
TGATGTTATCGACCAAACTA+GGG 0.607546 2_2:-70571372 Msa0269180:intron
GGCAAGAACTTGCTAAGCTG+AGG 0.613930 2_2:-70566289 Msa0269180:exon
AAGTGGGAGAAGAGCTCCTG+GGG 0.619297 2_2:-70567114 Msa0269180:CDS
AAGTGGGAGAAGAGCTCCTG+GGG 0.619297 2_2:-70570994 Msa0269180:CDS
GATAGATGTGAAGAACAAGT+GGG 0.623335 2_2:-70567130 Msa0269180:intron
GATAGATGTGAAGAACAAGT+GGG 0.623335 2_2:-70571010 Msa0269180:intron
TGAATTGTCCTAGACTTAGA+GGG 0.624453 2_2:+70565858 None:intergenic
TAAGAAGAAGGATCTCGTCA+AGG 0.637349 2_2:-70567292 Msa0269180:CDS
CAAGTGGGAGAAGAGCTCCT+GGG 0.641380 2_2:-70567115 Msa0269180:CDS
CAAGTGGGAGAAGAGCTCCT+GGG 0.641380 2_2:-70570995 Msa0269180:CDS
ATGAAGTAATGCCTAAGCTG+CGG 0.676586 2_2:+70566262 None:intergenic
CATTGTATGAATGTCCCTTG+TGG 0.683978 2_2:-70565762 Msa0269180:three_prime_UTR
TTTCACCAGAATGTCCACAA+GGG 0.722276 2_2:+70565748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAAATTTTATAATTTGAA+AGG - chr2_2:70568137-70568156 Msa0269180:intron 10.0%
!!! GTTTTTTTTTTTTTTTTTTG+AGG - chr2_2:70569124-70569143 Msa0269180:intron 10.0%
!! ACAAAAATAAATATATAGAT+AGG + chr2_2:70570141-70570160 None:intergenic 10.0%
!!! ATTTTATGATAAAAGATTAA+GGG + chr2_2:70570823-70570842 None:intergenic 10.0%
!!! AATTTTATGATAAAAGATTA+AGG + chr2_2:70570824-70570843 None:intergenic 10.0%
!!! TAATCTTTTATCATAAAATT+TGG - chr2_2:70570824-70570843 Msa0269180:intron 10.0%
!!! ATAATAGCTTTTCTTTATTT+TGG - chr2_2:70565697-70565716 Msa0269180:three_prime_UTR 15.0%
!!! TAATAGCTTTTCTTTATTTT+GGG - chr2_2:70565698-70565717 Msa0269180:three_prime_UTR 15.0%
!! ACAAAAATAAATACATAGAT+AGG + chr2_2:70566273-70566292 None:intergenic 15.0%
!!! TATATTTTGTTTGTTGAAAT+TGG - chr2_2:70566302-70566321 Msa0269180:CDS 15.0%
!!! TGGATTTTTTTTTTTTTTTG+TGG - chr2_2:70566322-70566341 Msa0269180:intron 15.0%
!!! TTTTTTTTTTTTGTGGTAAT+TGG - chr2_2:70566329-70566348 Msa0269180:intron 15.0%
!! TTTGGTTAAATAACTTAATT+AGG - chr2_2:70566544-70566563 Msa0269180:intron 15.0%
!! TATGTTCAAAAATTGTTAAA+TGG + chr2_2:70566988-70567007 None:intergenic 15.0%
!! ATTATGATTTAAACTTACTT+TGG - chr2_2:70567914-70567933 Msa0269180:intron 15.0%
!! TTATGATTTAAACTTACTTT+GGG - chr2_2:70567915-70567934 Msa0269180:intron 15.0%
!!! TTTTTATGTTAAATGATTAC+TGG + chr2_2:70568261-70568280 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr2_2:70568840-70568859 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr2_2:70568839-70568858 None:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr2_2:70568584-70568603 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr2_2:70568619-70568638 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr2_2:70568749-70568768 Msa0269180:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr2_2:70568839-70568858 Msa0269180:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr2_2:70568840-70568859 Msa0269180:intron 15.0%
!! ACTTATTATCATTATTTGTT+GGG + chr2_2:70568883-70568902 None:intergenic 15.0%
!! AACTTATTATCATTATTTGT+TGG + chr2_2:70568884-70568903 None:intergenic 15.0%
!!! ATAATAGCTTTTCTTTATTT+TGG - chr2_2:70565697-70565716 Msa0269180:three_prime_UTR 15.0%
!!! TAATAGCTTTTCTTTATTTT+GGG - chr2_2:70565698-70565717 Msa0269180:three_prime_UTR 15.0%
!! AAATAAATCTCATAAATAGA+AGG + chr2_2:70571173-70571192 None:intergenic 15.0%
!!! TTTGTGATGTTTTATAAAGA+GGG + chr2_2:70565755-70565774 None:intergenic 20.0%
!!! TTTTGTGATGTTTTATAAAG+AGG + chr2_2:70565756-70565775 None:intergenic 20.0%
!! ATTAGAGAAAGATTAAGAAA+TGG + chr2_2:70565881-70565900 None:intergenic 20.0%
!! AAGATTGGAAATTTGAAAAT+GGG + chr2_2:70566033-70566052 None:intergenic 20.0%
!! AAAGATTGGAAATTTGAAAA+TGG + chr2_2:70566034-70566053 None:intergenic 20.0%
!!! TTTTCAGAAATTAAGCAAAT+GGG + chr2_2:70566074-70566093 None:intergenic 20.0%
!!! TTTTTCAGAAATTAAGCAAA+TGG + chr2_2:70566075-70566094 None:intergenic 20.0%
!! CTAAAATTATACCTTAATCT+TGG + chr2_2:70566476-70566495 None:intergenic 20.0%
!! TTAAGTTATTTAACCAAACA+AGG + chr2_2:70566542-70566561 None:intergenic 20.0%
!! TTAAGTTATTTATCCAAACA+GGG + chr2_2:70566624-70566643 None:intergenic 20.0%
!! TTTGGATAAATAACTTAACT+TGG - chr2_2:70566626-70566645 Msa0269180:intron 20.0%
!!! ATTGTTTTTGTATAAGCTTT+AGG - chr2_2:70566728-70566747 Msa0269180:intron 20.0%
!!! TTGTTTTTGTATAAGCTTTA+GGG - chr2_2:70566729-70566748 Msa0269180:intron 20.0%
!!! AATCTGTTTCTTAAGTTATT+TGG - chr2_2:70566945-70566964 Msa0269180:intron 20.0%
!!! TGTTTTTTCAAATTGTGTTT+TGG - chr2_2:70567094-70567113 Msa0269180:CDS 20.0%
!!! GTTTGCATATTTTTTAATGT+TGG - chr2_2:70567459-70567478 Msa0269180:intron 20.0%
!! TGAACATATCATTAAGTAAA+TGG - chr2_2:70567796-70567815 Msa0269180:intron 20.0%
!! ATCATAATTAACTCATAACA+CGG + chr2_2:70567902-70567921 None:intergenic 20.0%
!! TATGATTTAAACTTACTTTG+GGG - chr2_2:70567916-70567935 Msa0269180:intron 20.0%
!!! TTAAATGACATTTTACAATC+AGG - chr2_2:70568041-70568060 Msa0269180:intron 20.0%
!! TATAATTTGAAAGGATTGTA+TGG - chr2_2:70568146-70568165 Msa0269180:intron 20.0%
!! AAAAAAATCAAAATGACTAC+AGG - chr2_2:70568181-70568200 Msa0269180:intron 20.0%
!! AGTGCAGAAAAATAAAATTA+GGG + chr2_2:70568456-70568475 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr2_2:70568489-70568508 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr2_2:70568490-70568509 None:intergenic 20.0%
!!! TTTGTGATGTTTTATATAGA+GGG + chr2_2:70569627-70569646 None:intergenic 20.0%
!!! TTTTGTGATGTTTTATATAG+AGG + chr2_2:70569628-70569647 None:intergenic 20.0%
!! ATTAGAGAAAGATTAAGAAA+TGG + chr2_2:70565881-70565900 None:intergenic 20.0%
!! AAGATTGGAAATTTGAAAAT+GGG + chr2_2:70566033-70566052 None:intergenic 20.0%
!! AAAGATTGGAAATTTGAAAA+TGG + chr2_2:70566034-70566053 None:intergenic 20.0%
!!! TAGCTTTTTTTTGTTGAAAT+TGG - chr2_2:70570189-70570208 Msa0269180:intron 20.0%
!!! TTGAAATTGGATTTTAATTG+TGG - chr2_2:70570202-70570221 Msa0269180:intron 20.0%
!! CTAAAATTATACCTTAATCT+TGG + chr2_2:70566476-70566495 None:intergenic 20.0%
!!! TTGTGAATTGATTTTAAGTT+AGG - chr2_2:70570392-70570411 Msa0269180:intron 20.0%
!!! TGTGAATTGATTTTAAGTTA+GGG - chr2_2:70570393-70570412 Msa0269180:intron 20.0%
!! TTAAGTTATTTATCCAAACA+AGG + chr2_2:70566624-70566643 None:intergenic 20.0%
!!! ATTGTATTTCTATAAGCTTT+AGG - chr2_2:70570606-70570625 Msa0269180:intron 20.0%
!!! TTGTATTTCTATAAGCTTTA+GGG - chr2_2:70570607-70570626 Msa0269180:intron 20.0%
!!! GATTGCATATTTTTTAATGT+AGG - chr2_2:70571221-70571240 Msa0269180:CDS 20.0%
!!! GTTTGCATATTTTTTAATGT+TGG - chr2_2:70567459-70567478 Msa0269180:intron 20.0%
!! TTGTGATGTTTTATAAAGAG+GGG + chr2_2:70565754-70565773 None:intergenic 25.0%
! GAACCTATCAAAATCATTAA+GGG + chr2_2:70566440-70566459 None:intergenic 25.0%
! TGAACCTATCAAAATCATTA+AGG + chr2_2:70566441-70566460 None:intergenic 25.0%
!!! TTGTGAAATGCTTTTTAGTT+AGG - chr2_2:70566516-70566535 Msa0269180:intron 25.0%
!!! TTGTGAAATGCTTTTAAGTT+AGG - chr2_2:70566598-70566617 Msa0269180:intron 25.0%
! GTTAAGTTATTTATCCAAAC+AGG + chr2_2:70566625-70566644 None:intergenic 25.0%
!! TTTTCATAAGTCAATCCAAA+CGG + chr2_2:70566756-70566775 None:intergenic 25.0%
! ATAATTTCAATTTGTGCAGA+GGG - chr2_2:70567151-70567170 Msa0269180:intron 25.0%
! TATGCAATCAAAAGCAAAAA+TGG + chr2_2:70567382-70567401 None:intergenic 25.0%
!!! CTAGAGGTTTTATTGTTATT+AGG - chr2_2:70567437-70567456 Msa0269180:intron 25.0%
! ATGATTTAAACTTACTTTGG+GGG - chr2_2:70567917-70567936 Msa0269180:intron 25.0%
!! ACAAAATCATGAAGATTTTG+AGG - chr2_2:70567979-70567998 Msa0269180:intron 25.0%
!! CAAAATCATGAAGATTTTGA+GGG - chr2_2:70567980-70567999 Msa0269180:intron 25.0%
!!! GGGATTATATTGATTTTTGT+TGG - chr2_2:70568000-70568019 Msa0269180:intron 25.0%
!! TTTTGAACACATGACTTTAA+CGG - chr2_2:70568065-70568084 Msa0269180:intron 25.0%
!!! TGACTTTAACGGATTTATAA+CGG - chr2_2:70568076-70568095 Msa0269180:intron 25.0%
!!! CAGATTTTTTGAGATTTCAA+AGG - chr2_2:70568109-70568128 Msa0269180:intron 25.0%
! AATCTGCTAACAAACAAATA+AGG - chr2_2:70568352-70568371 Msa0269180:intron 25.0%
! ATCTGCTAACAAACAAATAA+GGG - chr2_2:70568353-70568372 Msa0269180:intron 25.0%
! CAGTGCAGAAAAATAAAATT+AGG + chr2_2:70568457-70568476 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr2_2:70568777-70568796 Msa0269180:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr2_2:70568778-70568797 Msa0269180:intron 25.0%
!! TTTGAATGTGTATGTCTTTT+AGG + chr2_2:70569318-70569337 None:intergenic 25.0%
! TTGTTGTATAAGTAAAGATG+AGG - chr2_2:70569519-70569538 Msa0269180:intron 25.0%
!! TTGTGATGTTTTATATAGAG+GGG + chr2_2:70569626-70569645 None:intergenic 25.0%
!!! TTTTGAGAAATTACGCAAAT+GGG + chr2_2:70569946-70569965 None:intergenic 25.0%
!!! TTTTTGAGAAATTACGCAAA+TGG + chr2_2:70569947-70569966 None:intergenic 25.0%
!!! TGGATTTTAATTGTGGTAAT+TGG - chr2_2:70570209-70570228 Msa0269180:intron 25.0%
! GAACCTATCAAAATCATTAA+GGG + chr2_2:70566440-70566459 None:intergenic 25.0%
! TGAACCTATCAAAATCATTA+AGG + chr2_2:70566441-70566460 None:intergenic 25.0%
!! TTTGCATTTTATAGTGTAAG+TGG - chr2_2:70570523-70570542 Msa0269180:intron 25.0%
!! TTGCATTTTATAGTGTAAGT+GGG - chr2_2:70570524-70570543 Msa0269180:intron 25.0%
! GGTTATTATATAAGCTGTTA+TGG - chr2_2:70570546-70570565 Msa0269180:intron 25.0%
! CAAGTTTGTCTATGAAAAAA+CGG + chr2_2:70570730-70570749 None:intergenic 25.0%
! TAAAATAAGCTAATCCAAAC+AGG - chr2_2:70570940-70570959 Msa0269180:CDS 25.0%
!!! TTGTTTTTCAAATTGTGTCT+AGG - chr2_2:70570991-70571010 Msa0269180:CDS 25.0%
! TTAAATTTCAATTTGTGCAG+AGG - chr2_2:70571051-70571070 Msa0269180:intron 25.0%
! TAAATTTCAATTTGTGCAGA+GGG - chr2_2:70571052-70571071 Msa0269180:intron 25.0%
!! TATGCAATCAAAAGCATAAA+TGG + chr2_2:70571210-70571229 None:intergenic 25.0%
! AATCTGTTAGAAGTTTCAAA+TGG - chr2_2:70571338-70571357 Msa0269180:intron 25.0%
! GCTAGTGTTATATTCATAAA+TGG - chr2_2:70571679-70571698 Msa0269180:intron 25.0%
!! AGAGAGTGTTGTCAAAATTA+GGG + chr2_2:70565780-70565799 None:intergenic 30.0%
!! TAGAGAGTGTTGTCAAAATT+AGG + chr2_2:70565781-70565800 None:intergenic 30.0%
GGATGAAAATGGAAAAAGAT+TGG + chr2_2:70566048-70566067 None:intergenic 30.0%
!!! TTGTGATTTGTTTGTTTTGC+AGG - chr2_2:70566099-70566118 Msa0269180:three_prime_UTR 30.0%
GGAAATTGATTGTTAAGAAG+AGG - chr2_2:70566407-70566426 Msa0269180:intron 30.0%
AATTGATTGTTAAGAAGAGG+AGG - chr2_2:70566410-70566429 Msa0269180:intron 30.0%
ATTGATTGTTAAGAAGAGGA+GGG - chr2_2:70566411-70566430 Msa0269180:intron 30.0%
TGATAGGTTCAAGATTATGT+TGG - chr2_2:70566450-70566469 Msa0269180:intron 30.0%
! AATTAGGCTTTTAGTGTAAG+TGG - chr2_2:70566560-70566579 Msa0269180:intron 30.0%
AAAGTTGTATCTTCATAAGC+TGG - chr2_2:70566831-70566850 Msa0269180:intron 30.0%
TAATATTCATGAGCTTGTCA+AGG + chr2_2:70566871-70566890 None:intergenic 30.0%
CATAATTTCAATTTGTGCAG+AGG - chr2_2:70567150-70567169 Msa0269180:intron 30.0%
TCCTTCTATTTAGTACAACT+TGG - chr2_2:70567265-70567284 Msa0269180:intron 30.0%
TCCAAGTTGTACTAAATAGA+AGG + chr2_2:70567269-70567288 None:intergenic 30.0%
! TTTTGTATCACTAAGACAGT+TGG - chr2_2:70567299-70567318 Msa0269180:CDS 30.0%
TCTCGTAACACAAATATCTT+AGG + chr2_2:70567338-70567357 None:intergenic 30.0%
AGACAAAACATGTAACTTAC+AGG + chr2_2:70567692-70567711 None:intergenic 30.0%
TGATTTAAACTTACTTTGGG+GGG - chr2_2:70567918-70567937 Msa0269180:intron 30.0%
! GAGATTTCAGAAGACTATTT+TGG - chr2_2:70567953-70567972 Msa0269180:intron 30.0%
CAAGATTAGAACACTATGAA+AGG + chr2_2:70568715-70568734 None:intergenic 30.0%
!!! CCAATTTTGAAATGGATTTC+AGG + chr2_2:70569002-70569021 None:intergenic 30.0%
CCTGAAATCCATTTCAAAAT+TGG - chr2_2:70568999-70569018 Msa0269180:intron 30.0%
AAATCCATTTCAAAATTGGC+AGG - chr2_2:70569003-70569022 Msa0269180:intron 30.0%
AATCCATTTCAAAATTGGCA+GGG - chr2_2:70569004-70569023 Msa0269180:intron 30.0%
GATTAAATTGTGGGTGTATT+TGG + chr2_2:70569077-70569096 None:intergenic 30.0%
TTGTATAAGTAAAGATGAGG+TGG - chr2_2:70569522-70569541 Msa0269180:intron 30.0%
TGTATAAGTAAAGATGAGGT+GGG - chr2_2:70569523-70569542 Msa0269180:intron 30.0%
!! AGAGAGTGTTGTCAAAATTA+GGG + chr2_2:70565780-70565799 None:intergenic 30.0%
!! TAGAGAGTGTTGTCAAAATT+AGG + chr2_2:70565781-70565800 None:intergenic 30.0%
GGATGAAAATGGAAAAAGAT+TGG + chr2_2:70566048-70566067 None:intergenic 30.0%
!!! TTGTGATTTGTTTGTTTTGC+AGG - chr2_2:70566099-70566118 Msa0269180:three_prime_UTR 30.0%
GGAAATTGATTGTTAAGAAG+AGG - chr2_2:70566407-70566426 Msa0269180:intron 30.0%
AATTGATTGTTAAGAAGAGG+AGG - chr2_2:70566410-70566429 Msa0269180:intron 30.0%
ATTGATTGTTAAGAAGAGGA+GGG - chr2_2:70566411-70566430 Msa0269180:intron 30.0%
TGATAGGTTCAAGATTATGT+TGG - chr2_2:70566450-70566469 Msa0269180:intron 30.0%
! TGCATTTTATAGTGTAAGTG+GGG - chr2_2:70570525-70570544 Msa0269180:intron 30.0%
! TGGAGATACAATGTTTGTTA+GGG + chr2_2:70570703-70570722 None:intergenic 30.0%
ATGGAGATACAATGTTTGTT+AGG + chr2_2:70570704-70570723 None:intergenic 30.0%
TAAAAGATTAAGGGTCTGTT+TGG + chr2_2:70570814-70570833 None:intergenic 30.0%
!!! CTAGAGGTTTTATTGGTATT+AGG - chr2_2:70571277-70571296 Msa0269180:intron 30.0%
TATGATACCAAGTCATGAAT+CGG + chr2_2:70571410-70571429 None:intergenic 30.0%
! GAGTATTGCAACATTTGTAA+TGG + chr2_2:70571433-70571452 None:intergenic 30.0%
ACTGTTAACATGTAACTTAC+GGG + chr2_2:70571557-70571576 None:intergenic 30.0%
GACTGTTAACATGTAACTTA+CGG + chr2_2:70571558-70571577 None:intergenic 30.0%
GACATTCATACAATGTTTAC+AGG + chr2_2:70571609-70571628 None:intergenic 30.0%
!! TGTTTTATAAAGAGGGGCAT+TGG + chr2_2:70565748-70565767 None:intergenic 35.0%
! TCACCATTTTCGATTTTCTG+AGG + chr2_2:70565826-70565845 None:intergenic 35.0%
ATCTCAACAAACCTCTTGAA+CGG + chr2_2:70565927-70565946 None:intergenic 35.0%
!! TTCAAGAGGTTTGTTGAGAT+CGG - chr2_2:70565927-70565946 Msa0269180:three_prime_UTR 35.0%
TTGATGTTATCGACCAAACT+AGG - chr2_2:70566003-70566022 Msa0269180:three_prime_UTR 35.0%
TGATGTTATCGACCAAACTA+GGG - chr2_2:70566004-70566023 Msa0269180:three_prime_UTR 35.0%
! AGAAATTAAGCAAATGGGCT+AGG + chr2_2:70566069-70566088 None:intergenic 35.0%
GAAAGCCTCTTGAAATTGAT+TGG + chr2_2:70566157-70566176 None:intergenic 35.0%
TGATAGATGTGAAGAACAAG+TGG - chr2_2:70566365-70566384 Msa0269180:intron 35.0%
GATAGATGTGAAGAACAAGT+GGG - chr2_2:70566366-70566385 Msa0269180:intron 35.0%
!! CTGCCCTTAATGATTTTGAT+AGG - chr2_2:70566434-70566453 Msa0269180:intron 35.0%
GATTATGTTGGCCAAGATTA+AGG - chr2_2:70566462-70566481 Msa0269180:intron 35.0%
!!! CTTTTTAGTTAGGCCTTGTT+TGG - chr2_2:70566526-70566545 Msa0269180:intron 35.0%
TGGAGCTTATTGTGTAAATG+TGG - chr2_2:70566646-70566665 Msa0269180:intron 35.0%
GGTTATTATACGAGCTGTTA+TGG - chr2_2:70566667-70566686 Msa0269180:intron 35.0%
CAGATTAAGTCTGTTCAGAT+TGG + chr2_2:70566931-70566950 None:intergenic 35.0%
! ACCACACATAAGTTTCAAGT+TGG - chr2_2:70567007-70567026 Msa0269180:intron 35.0%
ACCAACTTGAAACTTATGTG+TGG + chr2_2:70567011-70567030 None:intergenic 35.0%
AACCCTATAAACTCAGCTAA+GGG + chr2_2:70567068-70567087 None:intergenic 35.0%
AAACCCTATAAACTCAGCTA+AGG + chr2_2:70567069-70567088 None:intergenic 35.0%
! GAGTATTGCAGCATTTGTAA+TGG + chr2_2:70567571-70567590 None:intergenic 35.0%
CATGGGCAATAACATTTCTT+TGG + chr2_2:70567822-70567841 None:intergenic 35.0%
ACTGCATCAACAATGTTCAT+GGG + chr2_2:70567839-70567858 None:intergenic 35.0%
! GATTTAAACTTACTTTGGGG+GGG - chr2_2:70567919-70567938 Msa0269180:intron 35.0%
TACACCTTAAACACCATTAC+AGG - chr2_2:70568293-70568312 Msa0269180:intron 35.0%
CATTCCTGTAATGGTGTTTA+AGG + chr2_2:70568300-70568319 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+TGG + chr2_2:70568412-70568431 None:intergenic 35.0%
TGCTCTATGTGCATTTGATT+TGG + chr2_2:70569049-70569068 None:intergenic 35.0%
CAGAGTTGGGATTAAATTGT+GGG + chr2_2:70569086-70569105 None:intergenic 35.0%
ACAGAGTTGGGATTAAATTG+TGG + chr2_2:70569087-70569106 None:intergenic 35.0%
CAATTTAATCCCAACTCTGT+TGG - chr2_2:70569087-70569106 Msa0269180:intron 35.0%
GATTGATTGTTTGTGTTGCA+GGG + chr2_2:70569282-70569301 None:intergenic 35.0%
!!! TCTTTTAGGTTTGACACTCA+GGG + chr2_2:70569304-70569323 None:intergenic 35.0%
ATCAAGTGTGCTAAGATGTT+TGG + chr2_2:70569353-70569372 None:intergenic 35.0%
GTATAAGTAAAGATGAGGTG+GGG - chr2_2:70569524-70569543 Msa0269180:intron 35.0%
!! TGTTTTATATAGAGGGGCAT+TGG + chr2_2:70569620-70569639 None:intergenic 35.0%
! TCACCATTTTCGATTTTCTG+AGG + chr2_2:70565826-70565845 None:intergenic 35.0%
ATCTCAACAAACCTCTTGAA+CGG + chr2_2:70565927-70565946 None:intergenic 35.0%
!! TTCAAGAGGTTTGTTGAGAT+CGG - chr2_2:70565927-70565946 Msa0269180:three_prime_UTR 35.0%
TTGATGTTATCGACCAAACT+AGG - chr2_2:70566003-70566022 Msa0269180:three_prime_UTR 35.0%
TGATGTTATCGACCAAACTA+GGG - chr2_2:70566004-70566023 Msa0269180:three_prime_UTR 35.0%
GAAAGCCTCTTGAAATTGAT+TGG + chr2_2:70566157-70566176 None:intergenic 35.0%
TGATAGATGTGAAGAACAAG+TGG - chr2_2:70566365-70566384 Msa0269180:intron 35.0%
GATAGATGTGAAGAACAAGT+GGG - chr2_2:70566366-70566385 Msa0269180:intron 35.0%
!! CTGCCCTTAATGATTTTGAT+AGG - chr2_2:70566434-70566453 Msa0269180:intron 35.0%
GATTATGTTGGCCAAGATTA+AGG - chr2_2:70566462-70566481 Msa0269180:intron 35.0%
! TTAAGTTGTCTATCCAAGCA+GGG + chr2_2:70570419-70570438 None:intergenic 35.0%
! ATTAAGTTGTCTATCCAAGC+AGG + chr2_2:70570420-70570439 None:intergenic 35.0%
TTGTGAAATGCTCGTAAGTT+GGG - chr2_2:70570477-70570496 Msa0269180:intron 35.0%
TTCTCATAACCCAATTCAAG+CGG + chr2_2:70570634-70570653 None:intergenic 35.0%
GTCTATGAAAAAACGGCTTA+TGG + chr2_2:70570723-70570742 None:intergenic 35.0%
!!! TTTGGATTGGCTTCTTTTTG+AGG + chr2_2:70570796-70570815 None:intergenic 35.0%
AACCCTACATACTCAACTAA+GGG + chr2_2:70570966-70570985 None:intergenic 35.0%
AAACCCTACATACTCAACTA+AGG + chr2_2:70570967-70570986 None:intergenic 35.0%
!! GAAAGAGCTAGAGGTTTTAT+TGG - chr2_2:70567430-70567449 Msa0269180:intron 35.0%
TGAATTGTCCTAGACTTAGA+GGG + chr2_2:70571521-70571540 None:intergenic 35.0%
TAGCTTATGCATATCATGGT+TGG + chr2_2:70571663-70571682 None:intergenic 35.0%
! ACACTAGCTTATGCATATCA+TGG + chr2_2:70571667-70571686 None:intergenic 35.0%
CATGGGCAATAACATTTCTT+TGG + chr2_2:70567822-70567841 None:intergenic 35.0%
!! ATAAAGAGGGGCATTGGAAT+GGG + chr2_2:70565742-70565761 None:intergenic 40.0%
!! TATAAAGAGGGGCATTGGAA+TGG + chr2_2:70565743-70565762 None:intergenic 40.0%
GTGCCTCAGAAAATCGAAAA+TGG - chr2_2:70565820-70565839 Msa0269180:three_prime_UTR 40.0%
AGAGTTGCACTTGTCAACTA+TGG - chr2_2:70565951-70565970 Msa0269180:three_prime_UTR 40.0%
!! GAAAATGGGTTACCCTAGTT+TGG + chr2_2:70566019-70566038 None:intergenic 40.0%
!! CAAATGGGCTAGGATGAAAA+TGG + chr2_2:70566059-70566078 None:intergenic 40.0%
GAGCTCCAATCAATTTCAAG+AGG - chr2_2:70566149-70566168 Msa0269180:three_prime_UTR 40.0%
CAAGAGAGTTCCTAAGAAGA+AGG - chr2_2:70566201-70566220 Msa0269180:three_prime_UTR 40.0%
TTGACGAGATCCTTCTTCTT+AGG + chr2_2:70566214-70566233 None:intergenic 40.0%
AACAATCAATTTCCTTCCCC+AGG + chr2_2:70566401-70566420 None:intergenic 40.0%
!!! CTTTTAAGTTAGGCCCTGTT+TGG - chr2_2:70566608-70566627 Msa0269180:intron 40.0%
!! TATAAGCTTTAGGGTCCGTT+TGG - chr2_2:70566738-70566757 Msa0269180:intron 40.0%
AAGCCCTTAGCTGAGTTTAT+AGG - chr2_2:70567062-70567081 Msa0269180:intron 40.0%
AGCCCTTAGCTGAGTTTATA+GGG - chr2_2:70567063-70567082 Msa0269180:CDS 40.0%
ATGAAGTAATGCCTAAGCAG+CGG + chr2_2:70567216-70567235 None:intergenic 40.0%
ATCAAGCAAGAAAGAGCTAG+AGG - chr2_2:70567421-70567440 Msa0269180:intron 40.0%
! TCCAATACTTGTTACCCTCA+AGG - chr2_2:70567597-70567616 Msa0269180:intron 40.0%
TGTTCTTTGCTCCATAGTCT+AGG - chr2_2:70567645-70567664 Msa0269180:intron 40.0%
TGCTGAATTGTCCTAGACTA+TGG + chr2_2:70567659-70567678 None:intergenic 40.0%
CACTGCATCAACAATGTTCA+TGG + chr2_2:70567840-70567859 None:intergenic 40.0%
ACAAGTGAGCATTCCTGTAA+TGG + chr2_2:70568309-70568328 None:intergenic 40.0%
!!! CTTCTCATTTTTTCCCCTGA+TGG + chr2_2:70568972-70568991 None:intergenic 40.0%
!! TGACCCTGCCAATTTTGAAA+TGG + chr2_2:70569010-70569029 None:intergenic 40.0%
!! CACATTTTGCGTCGATAATC+TGG + chr2_2:70569188-70569207 None:intergenic 40.0%
TGTTGCAGGGTAGCAATTTA+TGG + chr2_2:70569269-70569288 None:intergenic 40.0%
GGATTGATTGTTTGTGTTGC+AGG + chr2_2:70569283-70569302 None:intergenic 40.0%
!!! GTCTTTTAGGTTTGACACTC+AGG + chr2_2:70569305-70569324 None:intergenic 40.0%
!! ATATAGAGGGGCATTGGAAT+GGG + chr2_2:70569614-70569633 None:intergenic 40.0%
!! TATATAGAGGGGCATTGGAA+TGG + chr2_2:70569615-70569634 None:intergenic 40.0%
GTGCCTCAGAAAATCGAAAA+TGG - chr2_2:70565820-70565839 Msa0269180:three_prime_UTR 40.0%
AGAGTTGCACTTGTCAACTA+TGG - chr2_2:70565951-70565970 Msa0269180:three_prime_UTR 40.0%
!! GAAAATGGGTTACCCTAGTT+TGG + chr2_2:70566019-70566038 None:intergenic 40.0%
!! CAAATGGGCTAGGATGAAAA+TGG + chr2_2:70566059-70566078 None:intergenic 40.0%
! AGAAATTACGCAAATGGGCT+AGG + chr2_2:70569941-70569960 None:intergenic 40.0%
GAGCTCCAATCAATTTCAAG+AGG - chr2_2:70566149-70566168 Msa0269180:three_prime_UTR 40.0%
CAAGAGAGTTCCTAAGAAGA+AGG - chr2_2:70566201-70566220 Msa0269180:three_prime_UTR 40.0%
TTGACGAGATCCTTCTTCTT+AGG + chr2_2:70566214-70566233 None:intergenic 40.0%
TAAGAAGAAGGATCTCGTCA+AGG - chr2_2:70566213-70566232 Msa0269180:three_prime_UTR 40.0%
AACAATCAATTTCCTTCCCC+AGG + chr2_2:70566401-70566420 None:intergenic 40.0%
TTTGCAGCTTGTAGTTCAAG+TGG - chr2_2:70570439-70570458 Msa0269180:intron 40.0%
GTTGTGAAATGCTCGTAAGT+TGG - chr2_2:70570476-70570495 Msa0269180:intron 40.0%
TCTCATAACCCAATTCAAGC+GGG + chr2_2:70570633-70570652 None:intergenic 40.0%
GATTAAGGGTCTGTTTGGAT+TGG + chr2_2:70570809-70570828 None:intergenic 40.0%
TCTCTGTGAGTACTTATGTG+TGG + chr2_2:70570891-70570910 None:intergenic 40.0%
! CAGAGAGTCTTACATGCTTT+TGG - chr2_2:70570905-70570924 Msa0269180:intron 40.0%
ATGAAGTAATGCCTAAGCTG+CGG + chr2_2:70571117-70571136 None:intergenic 40.0%
ATCAAGCAAGAAAGAGCTAG+AGG - chr2_2:70567421-70567440 Msa0269180:intron 40.0%
TACAACTCCGATTCATGACT+TGG - chr2_2:70571400-70571419 Msa0269180:CDS 40.0%
CTGAATTGTCCTAGACTTAG+AGG + chr2_2:70571522-70571541 None:intergenic 40.0%
CATTGTATGAATGTCCCTTG+TGG - chr2_2:70571614-70571633 Msa0269180:intron 40.0%
TTTCACCAGAATGTCCACAA+GGG + chr2_2:70571631-70571650 None:intergenic 40.0%
! TTTTCACCAGAATGTCCACA+AGG + chr2_2:70571632-70571651 None:intergenic 40.0%
ATTGGAATGGGCCTTTGTTC+GGG + chr2_2:70565730-70565749 None:intergenic 45.0%
CATTGGAATGGGCCTTTGTT+CGG + chr2_2:70565731-70565750 None:intergenic 45.0%
TCTTTGTTCAGCCGTTCAAG+AGG - chr2_2:70565913-70565932 Msa0269180:three_prime_UTR 45.0%
GTCAACTATGGCCCAGATTA+TGG - chr2_2:70565963-70565982 Msa0269180:three_prime_UTR 45.0%
CAACGAGCTTGCCATAATCT+GGG + chr2_2:70565977-70565996 None:intergenic 45.0%
ACAACGAGCTTGCCATAATC+TGG + chr2_2:70565978-70565997 None:intergenic 45.0%
TCTTGTTGATGCACCTGACA+TGG - chr2_2:70566123-70566142 Msa0269180:three_prime_UTR 45.0%
AATTCTACCTGCAGCTTCCA+TGG + chr2_2:70566239-70566258 None:intergenic 45.0%
! AGCTAAGGGCTTGTTTGGAT+TGG + chr2_2:70567054-70567073 None:intergenic 45.0%
! AACTCAGCTAAGGGCTTGTT+TGG + chr2_2:70567059-70567078 None:intergenic 45.0%
TTTCAATTTGTGCAGAGGGC+TGG - chr2_2:70567155-70567174 Msa0269180:intron 45.0%
GCCTTGAGGGTAACAAGTAT+TGG + chr2_2:70567601-70567620 None:intergenic 45.0%
TATGTCTAGCTACTCCCTTG+TGG - chr2_2:70567762-70567781 Msa0269180:intron 45.0%
ATGTCTAGCTACTCCCTTGT+GGG - chr2_2:70567763-70567782 Msa0269180:intron 45.0%
TCACCAGAATATGCCCACAA+GGG + chr2_2:70567779-70567798 None:intergenic 45.0%
TTCACCAGAATATGCCCACA+AGG + chr2_2:70567780-70567799 None:intergenic 45.0%
GTGAGATGCAACTTCCATCA+GGG - chr2_2:70568955-70568974 Msa0269180:intron 45.0%
TGAGATGCAACTTCCATCAG+GGG - chr2_2:70568956-70568975 Msa0269180:intron 45.0%
CAGCTAATGCCAACAGAGTT+GGG + chr2_2:70569099-70569118 None:intergenic 45.0%
TCAGCTAATGCCAACAGAGT+TGG + chr2_2:70569100-70569119 None:intergenic 45.0%
TCTGTTGGCATTAGCTGAGA+AGG - chr2_2:70569102-70569121 Msa0269180:intron 45.0%
TTTGAGGGACTTAGCTGAGA+AGG - chr2_2:70569140-70569159 Msa0269180:intron 45.0%
! CGTCGATAATCTGGAGCATT+TGG + chr2_2:70569179-70569198 None:intergenic 45.0%
!! ACATACAACCTGCGTTGACT+TGG + chr2_2:70569242-70569261 None:intergenic 45.0%
ATTGGAATGGGCCTTTGTTC+GGG + chr2_2:70565730-70565749 None:intergenic 45.0%
CATTGGAATGGGCCTTTGTT+CGG + chr2_2:70565731-70565750 None:intergenic 45.0%
TCTTTGTTCAGCCGTTCAAG+AGG - chr2_2:70565913-70565932 Msa0269180:three_prime_UTR 45.0%
GTCAACTATGGCCCAGATTA+TGG - chr2_2:70565963-70565982 Msa0269180:three_prime_UTR 45.0%
CAACGAGCTTGCCATAATCT+GGG + chr2_2:70565977-70565996 None:intergenic 45.0%
ACAACGAGCTTGCCATAATC+TGG + chr2_2:70565978-70565997 None:intergenic 45.0%
TCTTGTTGATGCACCTGACA+TGG - chr2_2:70566123-70566142 Msa0269180:three_prime_UTR 45.0%
!!! TTTTAAGTTAGGGCCCTGCT+TGG - chr2_2:70570403-70570422 Msa0269180:intron 45.0%
TACTCAACTAAGGGCCTGTT+TGG + chr2_2:70570957-70570976 None:intergenic 45.0%
AGGCCCTTAGTTGAGTATGT+AGG - chr2_2:70570960-70570979 Msa0269180:CDS 45.0%
GGCCCTTAGTTGAGTATGTA+GGG - chr2_2:70570961-70570980 Msa0269180:CDS 45.0%
TTTCAATTTGTGCAGAGGGC+TGG - chr2_2:70567155-70567174 Msa0269180:intron 45.0%
! TCCAACACTTGTTACCCTCA+AGG - chr2_2:70571459-70571478 Msa0269180:intron 45.0%
TCTTTGCTCCCTCTAAGTCT+AGG - chr2_2:70571510-70571529 Msa0269180:intron 45.0%
AATGTCCCTTGTGGACATTC+TGG - chr2_2:70571623-70571642 Msa0269180:intron 45.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr2_2:70568810-70568829 Msa0269180:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr2_2:70568811-70568830 Msa0269180:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr2_2:70569125-70569144 Msa0269180:intron 5.0%
!!! AATTAAATTTTAAATGATTT+TGG + chr2_2:70569459-70569478 None:intergenic 5.0%
ATGGGCCTTTGTTCGGGTAT+GGG + chr2_2:70565724-70565743 None:intergenic 50.0%
AATGGGCCTTTGTTCGGGTA+TGG + chr2_2:70565725-70565744 None:intergenic 50.0%
ATTGGAGCTCTCTCCATGTC+AGG + chr2_2:70566139-70566158 None:intergenic 50.0%
GAAGGATCTCGTCAAAGCCA+TGG - chr2_2:70566219-70566238 Msa0269180:three_prime_UTR 50.0%
!! GGCAAGAACTTGCTAAGCTG+AGG - chr2_2:70567186-70567205 Msa0269180:intron 50.0%
ACTCCCTTGTGGGCATATTC+TGG - chr2_2:70567773-70567792 Msa0269180:intron 50.0%
CGTGAGATGCAACTTCCATC+AGG - chr2_2:70568954-70568973 Msa0269180:intron 50.0%
ATGTCTTGCCAAGTCAACGC+AGG - chr2_2:70569231-70569250 Msa0269180:intron 50.0%
ATGGGCCTTTGTTCGGGTAT+GGG + chr2_2:70565724-70565743 None:intergenic 50.0%
AATGGGCCTTTGTTCGGGTA+TGG + chr2_2:70565725-70565744 None:intergenic 50.0%
ATTGGAGCTCTCTCCATGTC+AGG + chr2_2:70566139-70566158 None:intergenic 50.0%
GAAGGATCTCGTCAAGGCTA+TGG - chr2_2:70570090-70570109 Msa0269180:intron 50.0%
!! CTCGTAAGTTGGGCCTTGTT+TGG - chr2_2:70570487-70570506 Msa0269180:intron 50.0%
!! CTTTAGGGCCCGCTTGAATT+GGG - chr2_2:70570622-70570641 Msa0269180:intron 50.0%
!! GGCAAGAACTTGCTAAGCTG+AGG - chr2_2:70567186-70567205 Msa0269180:intron 50.0%
GCCTTGAGGGTAACAAGTGT+TGG + chr2_2:70571463-70571482 None:intergenic 50.0%
TTGGGCCCATACCCGAACAA+AGG - chr2_2:70565716-70565735 Msa0269180:three_prime_UTR 55.0%
GGCACTCGCAGCTGAAACAA+AGG + chr2_2:70565805-70565824 None:intergenic 55.0%
GTCAAAGCCATGGAAGCTGC+AGG - chr2_2:70566229-70566248 Msa0269180:three_prime_UTR 55.0%
ACAAGTGGGAGAAGAGCTCC+TGG - chr2_2:70566380-70566399 Msa0269180:intron 55.0%
CAAGTGGGAGAAGAGCTCCT+GGG - chr2_2:70566381-70566400 Msa0269180:intron 55.0%
AAGTGGGAGAAGAGCTCCTG+GGG - chr2_2:70566382-70566401 Msa0269180:intron 55.0%
!! TGCAGAGGGCTGGTGTTGTT+AGG - chr2_2:70567165-70567184 Msa0269180:intron 55.0%
TACCCTCAAGGCTGAGAGAG+TGG - chr2_2:70567609-70567628 Msa0269180:intron 55.0%
ACCCTCAAGGCTGAGAGAGT+GGG - chr2_2:70567610-70567629 Msa0269180:intron 55.0%
ACCCACTCTCTCAGCCTTGA+GGG + chr2_2:70567614-70567633 None:intergenic 55.0%
AACCCACTCTCTCAGCCTTG+AGG + chr2_2:70567615-70567634 None:intergenic 55.0%
! CTTACTTTGGGGGGGCGTAT+TGG - chr2_2:70567927-70567946 Msa0269180:intron 55.0%
TTGGGCCCATACCCGAACAA+AGG - chr2_2:70565716-70565735 Msa0269180:three_prime_UTR 55.0%
GGCACTCGCAGCTGAAACAA+AGG + chr2_2:70565805-70565824 None:intergenic 55.0%
GTCAAGGCTATGGAAGCTGC+AGG - chr2_2:70570100-70570119 Msa0269180:intron 55.0%
ACAAGTGGGAGAAGAGCTCC+TGG - chr2_2:70566380-70566399 Msa0269180:intron 55.0%
CAAGTGGGAGAAGAGCTCCT+GGG - chr2_2:70566381-70566400 Msa0269180:intron 55.0%
AAGTGGGAGAAGAGCTCCTG+GGG - chr2_2:70566382-70566401 Msa0269180:intron 55.0%
!! GCTTTAGGGCCCGCTTGAAT+TGG - chr2_2:70570621-70570640 Msa0269180:intron 55.0%
!! TGCAGAGGGCTGGTGTTGTT+AGG - chr2_2:70567165-70567184 Msa0269180:intron 55.0%
TACCCTCAAGGCAGAGAGAG+TGG - chr2_2:70571471-70571490 Msa0269180:intron 55.0%
ACCCTCAAGGCAGAGAGAGT+GGG - chr2_2:70571472-70571491 Msa0269180:intron 55.0%
ACCCACTCTCTCTGCCTTGA+GGG + chr2_2:70571476-70571495 None:intergenic 55.0%
AACCCACTCTCTCTGCCTTG+AGG + chr2_2:70571477-70571496 None:intergenic 55.0%
GCTGAGGAAGACCGCTGCTT+AGG - chr2_2:70567202-70567221 Msa0269180:intron 60.0%
GCTGAGGAAGACCGCAGCTT+AGG - chr2_2:70571103-70571122 Msa0269180:intron 60.0%
GGGAGAAGAGCTCCTGGGGA+AGG - chr2_2:70566386-70566405 Msa0269180:intron 65.0%
GGGAGAAGAGCTCCTGGGGA+AGG - chr2_2:70566386-70566405 Msa0269180:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70565664 70571734 70565664 ID=Msa0269180;Name=Msa0269180
chr2_2 mRNA 70565664 70571734 70565664 ID=Msa0269180-mRNA-1;Parent=Msa0269180;Name=Msa0269180-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.62|0.66|0.88|0.87|1|9|627|243
chr2_2 exon 70565664 70566327 70565664 ID=Msa0269180-mRNA-1:exon:22738;Parent=Msa0269180-mRNA-1
chr2_2 exon 70567063 70567147 70567063 ID=Msa0269180-mRNA-1:exon:22737;Parent=Msa0269180-mRNA-1
chr2_2 exon 70567277 70567406 70567277 ID=Msa0269180-mRNA-1:exon:22736;Parent=Msa0269180-mRNA-1
chr2_2 exon 70567501 70567602 70567501 ID=Msa0269180-mRNA-1:exon:22735;Parent=Msa0269180-mRNA-1
chr2_2 exon 70570915 70571027 70570915 ID=Msa0269180-mRNA-1:exon:22734;Parent=Msa0269180-mRNA-1
chr2_2 exon 70571148 70571277 70571148 ID=Msa0269180-mRNA-1:exon:22733;Parent=Msa0269180-mRNA-1
chr2_2 exon 70571373 70571474 70571373 ID=Msa0269180-mRNA-1:exon:22732;Parent=Msa0269180-mRNA-1
chr2_2 exon 70571557 70571584 70571557 ID=Msa0269180-mRNA-1:exon:22731;Parent=Msa0269180-mRNA-1
chr2_2 exon 70571730 70571734 70571730 ID=Msa0269180-mRNA-1:exon:22730;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70571730 70571734 70571730 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70571557 70571584 70571557 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70571373 70571474 70571373 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70571148 70571277 70571148 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70570915 70571027 70570915 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70567501 70567602 70567501 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70567277 70567406 70567277 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70567063 70567147 70567063 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 CDS 70566291 70566327 70566291 ID=Msa0269180-mRNA-1:cds;Parent=Msa0269180-mRNA-1
chr2_2 three_prime_UTR 70565664 70566290 70565664 ID=Msa0269180-mRNA-1:three_prime_utr;Parent=Msa0269180-mRNA-1
Gene Sequence

>Msa0269180

ATGAGCTGCGAGTGCCTCAGAAAATCGAAAATGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAAGCCATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGGTTCAAGATTATGTTGGCCAAGATTAAGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAGGCTATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGAGGGCTGGTGTTGTTAGGCAAGAACTTGCTAAGCTGA

Protein sequence

>Msa0269180

MSCECLRKSKMPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRFKIMLAKIKPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRGLVLLGKNLLS*