AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0819350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819350 MtrunA17_Chr5g0438511 86.000 50 6 1 1 49 1 50 2.11e-22 89.4
Msa0819350 MtrunA17_Chr5g0438501 84.314 51 7 1 1 50 1 51 1.72e-21 86.7
Msa0819350 MtrunA17_Chr5g0438491 98.000 50 1 0 1 50 1 50 2.36e-19 80.9
Msa0819350 MtrunA17_Chr5g0438441 54.839 93 29 5 1 90 1 83 6.32e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTACCACCTCCATATT+TGG 0.177321 5_3:+55800554 None:intergenic
AACTTCCACCGATGCTAAAA+AGG 0.195603 5_3:-55801393 Msa0819350:CDS
TTGAACAATGGATTCGAAAA+AGG 0.281503 5_3:-55801486 Msa0819350:exon
GTTGTAGCCGCCACCATATT+TGG 0.288929 5_3:+55800857 None:intergenic
GAAGTAAATGATGCCAAATA+TGG 0.357966 5_3:-55800567 Msa0819350:CDS
GGAGGGAAGGAGGGAGATGT+AGG 0.371149 5_3:+55801580 None:intergenic
GGTGGTTACAATGGTGGTGG+GGG 0.404226 5_3:-55800732 Msa0819350:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.415260 5_3:-55800735 Msa0819350:CDS
GGTCACGGTGGTCACGGTGG+AGG 0.419681 5_3:-55800711 Msa0819350:CDS
GGTGGAGGTCACGGTGGTCA+TGG 0.421667 5_3:-55800633 Msa0819350:CDS
GGTGGAGGTCACGGTGGTCA+TGG 0.425233 5_3:-55800675 Msa0819350:CDS
AGGTGGTTACAATGGTGGTG+GGG 0.426416 5_3:-55800733 Msa0819350:CDS
GAAGTAAATGATGCCAAATA+TGG 0.434415 5_3:-55800870 Msa0819350:CDS
TTTGAGTGTTGTCCTCAGTT+TGG 0.439668 5_3:+55800412 None:intergenic
CACGGTGGTCACGGTGGAGG+TGG 0.441060 5_3:-55800708 Msa0819350:CDS
GAAGTGTGCTCTATATATAA+TGG 0.448305 5_3:+55801559 None:intergenic
CACGGTGGACATGGTGGCCA+TGG 0.451717 5_3:-55800459 Msa0819350:CDS
CATGCTAAGCCTCTTGGCTA+TGG 0.452537 5_3:-55801456 Msa0819350:CDS
CACGGTGGACACGGTGGACA+TGG 0.456773 5_3:-55800468 Msa0819350:CDS
GAGGTGGTTACAATGGTGGT+GGG 0.460517 5_3:-55800734 Msa0819350:CDS
CATGGTGGCCATGGTGGTCA+CGG 0.466257 5_3:-55800450 Msa0819350:CDS
CACGGTGGTCATGGTGGAGG+TGG 0.469838 5_3:-55800666 Msa0819350:CDS
GAGGGAAGGAGGGAGATGTA+GGG 0.476081 5_3:+55801581 None:intergenic
GGAGGTGGTTACAATGGTGG+TGG 0.479043 5_3:-55800651 Msa0819350:CDS
CACGGTGGTGGCTACAACCA+CGG 0.484705 5_3:-55800801 Msa0819350:CDS
GGTCACGGTGGTCATGGTGG+AGG 0.488013 5_3:-55800669 Msa0819350:CDS
AATCCTCATGCTAAGCCTCT+TGG 0.494599 5_3:-55801462 Msa0819350:CDS
GGTGGTTACAATGGTGGTGG+AGG 0.504299 5_3:-55800648 Msa0819350:CDS
GGTGGTTACAATGGTGGTGG+AGG 0.504299 5_3:-55800690 Msa0819350:CDS
TACAATGGTGGTGGAGGTCA+CGG 0.506705 5_3:-55800642 Msa0819350:CDS
TACAATGGTGGTGGAGGTCA+CGG 0.506705 5_3:-55800684 Msa0819350:CDS
AGTGTTGTCCTCAGTTTGGT+CGG 0.506970 5_3:+55800416 None:intergenic
TATGGTGGCGGCTACAACCA+TGG 0.507111 5_3:-55800852 Msa0819350:CDS
TTTCCTCAGTGATGTCCGCT+AGG 0.509380 5_3:-55801427 Msa0819350:CDS
GGCTACAACCACGGTGGAGG+TGG 0.510095 5_3:-55800792 Msa0819350:CDS
GGTGGTTACCACAATGGTGG+TGG 0.512481 5_3:-55800774 Msa0819350:CDS
GGCGGTTACAACCACGGTGG+AGG 0.514615 5_3:-55800753 Msa0819350:CDS
CATGGTGGTCACGGTGGACA+CGG 0.515497 5_3:-55800441 Msa0819350:CDS
GGCTACAACCACGGTGGAGG+TGG 0.515766 5_3:-55800513 Msa0819350:CDS
GGTGGCTACAACCACGGTGG+AGG 0.521180 5_3:-55800795 Msa0819350:CDS
CATGGTGGAGGTGGTTACAA+TGG 0.522016 5_3:-55800657 Msa0819350:CDS
TATATATAATGGAGGGAAGG+AGG 0.528749 5_3:+55801570 None:intergenic
GGAGGTGGTCACGGTGGACA+CGG 0.533640 5_3:-55800477 Msa0819350:CDS
AGTAATTACAACGATGGTAG+AGG 0.535647 5_3:-55800537 Msa0819350:CDS
GGTAGAGGTGGCTACAACCA+CGG 0.539916 5_3:-55800522 Msa0819350:CDS
TTCCTCAGTGATGTCCGCTA+GGG 0.540952 5_3:-55801426 Msa0819350:CDS
GGCGGCTACAACCATGGTGG+TGG 0.546763 5_3:-55800846 Msa0819350:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.559565 5_3:-55800693 Msa0819350:CDS
GGTTACAACCACGGTGGAGG+TGG 0.560417 5_3:-55800492 Msa0819350:CDS
GGTTACAACCACGGTGGAGG+TGG 0.562762 5_3:-55800750 Msa0819350:CDS
CACGGTGGAGGTGGTTACAA+TGG 0.563087 5_3:-55800699 Msa0819350:CDS
GGTGGTTACAACCACGGTGG+AGG 0.568751 5_3:-55800495 Msa0819350:CDS
GGTTACCACAATGGTGGTGG+CGG 0.574406 5_3:-55800771 Msa0819350:CDS
ATATATAATGGAGGGAAGGA+GGG 0.578217 5_3:+55801571 None:intergenic
AACCACGGTGGAGGTGGTCA+CGG 0.578947 5_3:-55800486 Msa0819350:CDS
CACGGTGGAGGTGGTTACAA+TGG 0.582186 5_3:-55800741 Msa0819350:CDS
CTCTATATATAATGGAGGGA+AGG 0.583052 5_3:+55801567 None:intergenic
GGAGGTCACGGTGGTCATGG+TGG 0.586548 5_3:-55800672 Msa0819350:CDS
AATGATGCCAAATATGGAGG+TGG 0.589889 5_3:-55800561 Msa0819350:CDS
GGAGGTTATAACCACGGTGG+TGG 0.593426 5_3:-55800813 Msa0819350:CDS
GGTGGTGGTTACAATGGTGG+AGG 0.603294 5_3:-55800831 Msa0819350:CDS
GGTGGCTACAACCACGGTGG+AGG 0.603384 5_3:-55800516 Msa0819350:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.613370 5_3:-55800654 Msa0819350:CDS
GTGTGCTCTATATATAATGG+AGG 0.615419 5_3:+55801562 None:intergenic
AATGATGCCAAATATGGTGG+CGG 0.618610 5_3:-55800864 Msa0819350:CDS
CATGGTGGTGGTTACAATGG+TGG 0.620372 5_3:-55800834 Msa0819350:CDS
GGTGGTGGCGGTTACAACCA+CGG 0.630576 5_3:-55800759 Msa0819350:CDS
AACCATGGTGGTGGTTACAA+TGG 0.632166 5_3:-55800837 Msa0819350:CDS
ATCTGTTGCCGTGCAAACTG+AGG 0.633170 5_3:-55800601 Msa0819350:CDS
GGTGGACATGGTGGCCATGG+TGG 0.633718 5_3:-55800456 Msa0819350:CDS
TGTAACCGCCACCACCATTG+TGG 0.638615 5_3:+55800766 None:intergenic
GGAGGTCACGGTGGTCATGG+CGG 0.640286 5_3:-55800630 Msa0819350:CDS
GGTGGCCATGGTGGTCACGG+TGG 0.648775 5_3:-55800447 Msa0819350:CDS
GGTGGAGGTGGTTACCACAA+TGG 0.652457 5_3:-55800780 Msa0819350:CDS
AATTACAACGATGGTAGAGG+TGG 0.652701 5_3:-55800534 Msa0819350:CDS
GGTGGACACGGTGGACATGG+TGG 0.654274 5_3:-55800465 Msa0819350:CDS
GTTAAACAGATATTGAACAA+TGG 0.654336 5_3:-55801498 Msa0819350:exon
TAGCCAAGAGGCTTAGCATG+AGG 0.658082 5_3:+55801459 None:intergenic
CACGGTGGAGGTGGTCACGG+TGG 0.660681 5_3:-55800483 Msa0819350:CDS
TGTGCTCTATATATAATGGA+GGG 0.663392 5_3:+55801563 None:intergenic
CGTGTCCACCGTGACCACCA+TGG 0.663650 5_3:+55800442 None:intergenic
GGTGGTCACGGTGGACACGG+TGG 0.663754 5_3:-55800474 Msa0819350:CDS
CACCATTGTAACCACCACCA+TGG 0.664810 5_3:+55800835 None:intergenic
GGTGGTAGTAATTACAACGA+TGG 0.680382 5_3:-55800543 Msa0819350:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.682012 5_3:-55800696 Msa0819350:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.682012 5_3:-55800738 Msa0819350:CDS
GGTGGAGGTGGTTACAACCA+CGG 0.683488 5_3:-55800501 Msa0819350:CDS
CACCGTGACCACCTCCACCG+TGG 0.688584 5_3:+55800484 None:intergenic
ACACGGTGCCGACCAAACTG+AGG 0.694971 5_3:-55800424 Msa0819350:CDS
GTAAATGATGCCAAATATGG+AGG 0.695370 5_3:-55800564 Msa0819350:CDS
GTAAATGATGCCAAATATGG+TGG 0.699265 5_3:-55800867 Msa0819350:CDS
GGAGGTGGTTACCACAATGG+TGG 0.699554 5_3:-55800777 Msa0819350:CDS
AAATAAGAGCCATAGCCAAG+AGG 0.700367 5_3:+55801447 None:intergenic
AATGGTGGTGGAGGTCACGG+TGG 0.715780 5_3:-55800639 Msa0819350:CDS
AATGGTGGTGGAGGTCACGG+TGG 0.715780 5_3:-55800681 Msa0819350:CDS
AATGGTGGAGGTTATAACCA+CGG 0.716087 5_3:-55800819 Msa0819350:CDS
GGTTGTAACCACCTCCACCG+TGG 0.717584 5_3:+55800505 None:intergenic
TGTGGTAACCACCTCCACCG+TGG 0.717584 5_3:+55800784 None:intergenic
AGTTTCAGTTAAGTCCCTAG+CGG 0.722649 5_3:+55801412 None:intergenic
GTCCCTAGCGGACATCACTG+AGG 0.722830 5_3:+55801424 None:intergenic
CATTGTAACCACCTCCACCG+TGG 0.728784 5_3:+55800742 None:intergenic
CGTGGTTGTAGCCACCACCG+TGG 0.737277 5_3:+55800802 None:intergenic
GGTGGTGGCTACAACCACGG+TGG 0.776238 5_3:-55800798 Msa0819350:CDS
GGTGGCGGTTACAACCACGG+TGG 0.777031 5_3:-55800756 Msa0819350:CDS
AGAGGTGGCTACAACCACGG+TGG 0.781749 5_3:-55800519 Msa0819350:CDS
GGTGGCGGCTACAACCATGG+TGG 0.788220 5_3:-55800849 Msa0819350:CDS
GGAGGTGGTTACAACCACGG+TGG 0.797028 5_3:-55800498 Msa0819350:CDS
GGTGGAGGTTATAACCACGG+TGG 0.800098 5_3:-55800816 Msa0819350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTTTATATAATATTG+AGG + chr5_3:55800823-55800842 None:intergenic 10.0%
!!! ATATTTTTCTTTTTTTTGAA+GGG + chr5_3:55801012-55801031 None:intergenic 10.0%
!!! TATATTTTTCTTTTTTTTGA+AGG + chr5_3:55801013-55801032 None:intergenic 10.0%
!!! TCATTTTTTATATAATATTG+AGG + chr5_3:55800823-55800842 None:intergenic 10.0%
!!! ATATTTTTCTTTTTTTTGAA+GGG + chr5_3:55801012-55801031 None:intergenic 10.0%
!!! TATATTTTTCTTTTTTTTGA+AGG + chr5_3:55801013-55801032 None:intergenic 10.0%
!! GAATCTTTAAATGAATAATA+AGG + chr5_3:55801098-55801117 None:intergenic 15.0%
!! GAATCTTTAAATGAATAATA+AGG + chr5_3:55801098-55801117 None:intergenic 15.0%
!! AAATTATTCAAACATTACAC+CGG - chr5_3:55801060-55801079 Msa0819350:intron 20.0%
!! AAATTATTCAAACATTACAC+CGG - chr5_3:55801060-55801079 Msa0819350:intron 20.0%
! GTTAAACAGATATTGAACAA+TGG - chr5_3:55800529-55800548 Msa0819350:CDS 25.0%
!!! ATTCTTTCCTACTTTTTTGA+AGG - chr5_3:55800720-55800739 Msa0819350:CDS 25.0%
! GAATTATCCTTCAAAAAAGT+AGG + chr5_3:55800730-55800749 None:intergenic 25.0%
! AATAAGGAATATCAAAACAC+CGG + chr5_3:55801082-55801101 None:intergenic 25.0%
! GTTAAACAGATATTGAACAA+TGG - chr5_3:55800529-55800548 Msa0819350:CDS 25.0%
!!! ATTCTTTCCTACTTTTTTGA+AGG - chr5_3:55800720-55800739 Msa0819350:CDS 25.0%
! GAATTATCCTTCAAAAAAGT+AGG + chr5_3:55800730-55800749 None:intergenic 25.0%
! AATAAGGAATATCAAAACAC+CGG + chr5_3:55801082-55801101 None:intergenic 25.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_3:55800467-55800486 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_3:55800471-55800490 None:intergenic 30.0%
! TTGAACAATGGATTCGAAAA+AGG - chr5_3:55800541-55800560 Msa0819350:CDS 30.0%
TTCAATAAGAAGTTGTTGAG+TGG - chr5_3:55801033-55801052 Msa0819350:intron 30.0%
CATATATATTGTGTTTGCAG+AGG - chr5_3:55801117-55801136 Msa0819350:intron 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5_3:55801157-55801176 Msa0819350:intron 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5_3:55801157-55801176 Msa0819350:intron 30.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_3:55800467-55800486 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_3:55800471-55800490 None:intergenic 30.0%
! TTGAACAATGGATTCGAAAA+AGG - chr5_3:55800541-55800560 Msa0819350:CDS 30.0%
TTCAATAAGAAGTTGTTGAG+TGG - chr5_3:55801033-55801052 Msa0819350:intron 30.0%
CATATATATTGTGTTTGCAG+AGG - chr5_3:55801117-55801136 Msa0819350:intron 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5_3:55801157-55801176 Msa0819350:intron 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5_3:55801157-55801176 Msa0819350:intron 30.0%
! ATATATAATGGAGGGAAGGA+GGG + chr5_3:55800459-55800478 None:intergenic 35.0%
! TATATATAATGGAGGGAAGG+AGG + chr5_3:55800460-55800479 None:intergenic 35.0%
! CTCTATATATAATGGAGGGA+AGG + chr5_3:55800463-55800482 None:intergenic 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_3:55800468-55800487 None:intergenic 35.0%
GTAAATGATGCCAAATATGG+TGG - chr5_3:55801160-55801179 Msa0819350:intron 35.0%
GTAAATGATGCCAAATATGG+AGG - chr5_3:55801160-55801179 Msa0819350:intron 35.0%
ATTACTACCACCTCCATATT+TGG + chr5_3:55801476-55801495 None:intergenic 35.0%
AGTAATTACAACGATGGTAG+AGG - chr5_3:55801490-55801509 Msa0819350:exon 35.0%
! ATATATAATGGAGGGAAGGA+GGG + chr5_3:55800459-55800478 None:intergenic 35.0%
! TATATATAATGGAGGGAAGG+AGG + chr5_3:55800460-55800479 None:intergenic 35.0%
! CTCTATATATAATGGAGGGA+AGG + chr5_3:55800463-55800482 None:intergenic 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_3:55800468-55800487 None:intergenic 35.0%
GTAAATGATGCCAAATATGG+TGG - chr5_3:55801160-55801179 Msa0819350:intron 35.0%
GTAAATGATGCCAAATATGG+AGG - chr5_3:55801160-55801179 Msa0819350:intron 35.0%
ATTACTACCACCTCCATATT+TGG + chr5_3:55801476-55801495 None:intergenic 35.0%
AGTAATTACAACGATGGTAG+AGG - chr5_3:55801490-55801509 Msa0819350:exon 35.0%
AAATAAGAGCCATAGCCAAG+AGG + chr5_3:55800583-55800602 None:intergenic 40.0%
AGTTTCAGTTAAGTCCCTAG+CGG + chr5_3:55800618-55800637 None:intergenic 40.0%
AACTTCCACCGATGCTAAAA+AGG - chr5_3:55800634-55800653 Msa0819350:CDS 40.0%
ACTTCCACCGATGCTAAAAA+GGG - chr5_3:55800635-55800654 Msa0819350:CDS 40.0%
!! TAGCTCACCCTTTTTAGCAT+CGG + chr5_3:55800645-55800664 None:intergenic 40.0%
AATGATGCCAAATATGGTGG+CGG - chr5_3:55801163-55801182 Msa0819350:intron 40.0%
! AATGGTGGAGGTTATAACCA+CGG - chr5_3:55801208-55801227 Msa0819350:intron 40.0%
! AGTCTTTTCCTCAGTTTGCA+CGG + chr5_3:55801437-55801456 None:intergenic 40.0%
AATGATGCCAAATATGGAGG+TGG - chr5_3:55801466-55801485 Msa0819350:CDS 40.0%
GGTGGTAGTAATTACAACGA+TGG - chr5_3:55801484-55801503 Msa0819350:exon 40.0%
AATTACAACGATGGTAGAGG+TGG - chr5_3:55801493-55801512 Msa0819350:exon 40.0%
! TTTGAGTGTTGTCCTCAGTT+TGG + chr5_3:55801618-55801637 None:intergenic 40.0%
AAATAAGAGCCATAGCCAAG+AGG + chr5_3:55800583-55800602 None:intergenic 40.0%
AGTTTCAGTTAAGTCCCTAG+CGG + chr5_3:55800618-55800637 None:intergenic 40.0%
AACTTCCACCGATGCTAAAA+AGG - chr5_3:55800634-55800653 Msa0819350:CDS 40.0%
ACTTCCACCGATGCTAAAAA+GGG - chr5_3:55800635-55800654 Msa0819350:CDS 40.0%
!! TAGCTCACCCTTTTTAGCAT+CGG + chr5_3:55800645-55800664 None:intergenic 40.0%
AATGATGCCAAATATGGTGG+CGG - chr5_3:55801163-55801182 Msa0819350:intron 40.0%
! AATGGTGGAGGTTATAACCA+CGG - chr5_3:55801208-55801227 Msa0819350:intron 40.0%
! AGTCTTTTCCTCAGTTTGCA+CGG + chr5_3:55801437-55801456 None:intergenic 40.0%
AATGATGCCAAATATGGAGG+TGG - chr5_3:55801466-55801485 Msa0819350:CDS 40.0%
GGTGGTAGTAATTACAACGA+TGG - chr5_3:55801484-55801503 Msa0819350:exon 40.0%
AATTACAACGATGGTAGAGG+TGG - chr5_3:55801493-55801512 Msa0819350:exon 40.0%
! TTTGAGTGTTGTCCTCAGTT+TGG + chr5_3:55801618-55801637 None:intergenic 40.0%
AATCCTCATGCTAAGCCTCT+TGG - chr5_3:55800565-55800584 Msa0819350:CDS 45.0%
!! AACCATGGTGGTGGTTACAA+TGG - chr5_3:55801190-55801209 Msa0819350:intron 45.0%
AGTGTTGTCCTCAGTTTGGT+CGG + chr5_3:55801614-55801633 None:intergenic 45.0%
AATCCTCATGCTAAGCCTCT+TGG - chr5_3:55800565-55800584 Msa0819350:CDS 45.0%
!! AACCATGGTGGTGGTTACAA+TGG - chr5_3:55801190-55801209 Msa0819350:intron 45.0%
AGTGTTGTCCTCAGTTTGGT+CGG + chr5_3:55801614-55801633 None:intergenic 45.0%
TAGCCAAGAGGCTTAGCATG+AGG + chr5_3:55800571-55800590 None:intergenic 50.0%
CATGCTAAGCCTCTTGGCTA+TGG - chr5_3:55800571-55800590 Msa0819350:CDS 50.0%
TTTCCTCAGTGATGTCCGCT+AGG - chr5_3:55800600-55800619 Msa0819350:CDS 50.0%
TTCCTCAGTGATGTCCGCTA+GGG - chr5_3:55800601-55800620 Msa0819350:CDS 50.0%
!! CTCACCCTTTTTAGCATCGG+TGG + chr5_3:55800642-55800661 None:intergenic 50.0%
GTTGTAGCCGCCACCATATT+TGG + chr5_3:55801173-55801192 None:intergenic 50.0%
CACCATTGTAACCACCACCA+TGG + chr5_3:55801195-55801214 None:intergenic 50.0%
!! CATGGTGGTGGTTACAATGG+TGG - chr5_3:55801193-55801212 Msa0819350:intron 50.0%
GAGGTGGTTACAATGGTGGT+GGG - chr5_3:55801293-55801312 Msa0819350:intron 50.0%
! AGGTGGTTACAATGGTGGTG+GGG - chr5_3:55801294-55801313 Msa0819350:intron 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5_3:55801343-55801362 Msa0819350:intron 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_3:55801370-55801389 Msa0819350:intron 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5_3:55801343-55801362 Msa0819350:intron 50.0%
ATCTGTTGCCGTGCAAACTG+AGG - chr5_3:55801426-55801445 Msa0819350:CDS 50.0%
TAGCCAAGAGGCTTAGCATG+AGG + chr5_3:55800571-55800590 None:intergenic 50.0%
CATGCTAAGCCTCTTGGCTA+TGG - chr5_3:55800571-55800590 Msa0819350:CDS 50.0%
TTTCCTCAGTGATGTCCGCT+AGG - chr5_3:55800600-55800619 Msa0819350:CDS 50.0%
TTCCTCAGTGATGTCCGCTA+GGG - chr5_3:55800601-55800620 Msa0819350:CDS 50.0%
!! CTCACCCTTTTTAGCATCGG+TGG + chr5_3:55800642-55800661 None:intergenic 50.0%
GTTGTAGCCGCCACCATATT+TGG + chr5_3:55801173-55801192 None:intergenic 50.0%
CACCATTGTAACCACCACCA+TGG + chr5_3:55801195-55801214 None:intergenic 50.0%
!! CATGGTGGTGGTTACAATGG+TGG - chr5_3:55801193-55801212 Msa0819350:intron 50.0%
GAGGTGGTTACAATGGTGGT+GGG - chr5_3:55801293-55801312 Msa0819350:intron 50.0%
! AGGTGGTTACAATGGTGGTG+GGG - chr5_3:55801294-55801313 Msa0819350:intron 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5_3:55801343-55801362 Msa0819350:intron 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_3:55801370-55801389 Msa0819350:intron 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5_3:55801343-55801362 Msa0819350:intron 50.0%
ATCTGTTGCCGTGCAAACTG+AGG - chr5_3:55801426-55801445 Msa0819350:CDS 50.0%
GAGGGAAGGAGGGAGATGTA+GGG + chr5_3:55800449-55800468 None:intergenic 55.0%
!! TATGGTGGCGGCTACAACCA+TGG - chr5_3:55801175-55801194 Msa0819350:intron 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_3:55801196-55801215 Msa0819350:intron 55.0%
GGTGGAGGTTATAACCACGG+TGG - chr5_3:55801211-55801230 Msa0819350:intron 55.0%
GGAGGTTATAACCACGGTGG+TGG - chr5_3:55801214-55801233 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACCACAA+TGG - chr5_3:55801247-55801266 Msa0819350:intron 55.0%
GGAGGTGGTTACCACAATGG+TGG - chr5_3:55801250-55801269 Msa0819350:intron 55.0%
GGTGGTTACCACAATGGTGG+TGG - chr5_3:55801253-55801272 Msa0819350:intron 55.0%
!! GGTTACCACAATGGTGGTGG+CGG - chr5_3:55801256-55801275 Msa0819350:intron 55.0%
TGTAACCGCCACCACCATTG+TGG + chr5_3:55801264-55801283 None:intergenic 55.0%
CATTGTAACCACCTCCACCG+TGG + chr5_3:55801288-55801307 None:intergenic 55.0%
CACGGTGGAGGTGGTTACAA+TGG - chr5_3:55801286-55801305 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55801289-55801308 Msa0819350:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55801292-55801311 Msa0819350:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+GGG - chr5_3:55801295-55801314 Msa0819350:intron 55.0%
!! TACAATGGTGGTGGGGGTCA+CGG - chr5_3:55801301-55801320 Msa0819350:intron 55.0%
CACGGTGGAGGTGGTTACAA+TGG - chr5_3:55801286-55801305 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55801289-55801308 Msa0819350:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55801292-55801311 Msa0819350:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_3:55801295-55801314 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55801289-55801308 Msa0819350:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55801292-55801311 Msa0819350:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_3:55801295-55801314 Msa0819350:intron 55.0%
GGTAGAGGTGGCTACAACCA+CGG - chr5_3:55801505-55801524 Msa0819350:five_prime_UTR 55.0%
GGTGGAGGTGGTTACAACCA+CGG - chr5_3:55801526-55801545 Msa0819350:five_prime_UTR 55.0%
GAGGGAAGGAGGGAGATGTA+GGG + chr5_3:55800449-55800468 None:intergenic 55.0%
!! TATGGTGGCGGCTACAACCA+TGG - chr5_3:55801175-55801194 Msa0819350:intron 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_3:55801196-55801215 Msa0819350:intron 55.0%
GGTGGAGGTTATAACCACGG+TGG - chr5_3:55801211-55801230 Msa0819350:intron 55.0%
GGAGGTTATAACCACGGTGG+TGG - chr5_3:55801214-55801233 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACCACAA+TGG - chr5_3:55801247-55801266 Msa0819350:intron 55.0%
GGAGGTGGTTACCACAATGG+TGG - chr5_3:55801250-55801269 Msa0819350:intron 55.0%
GGTGGTTACCACAATGGTGG+TGG - chr5_3:55801253-55801272 Msa0819350:intron 55.0%
!! GGTTACCACAATGGTGGTGG+CGG - chr5_3:55801256-55801275 Msa0819350:intron 55.0%
TGTAACCGCCACCACCATTG+TGG + chr5_3:55801264-55801283 None:intergenic 55.0%
CATTGTAACCACCTCCACCG+TGG + chr5_3:55801288-55801307 None:intergenic 55.0%
CACGGTGGAGGTGGTTACAA+TGG - chr5_3:55801286-55801305 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55801289-55801308 Msa0819350:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55801292-55801311 Msa0819350:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+GGG - chr5_3:55801295-55801314 Msa0819350:intron 55.0%
!! TACAATGGTGGTGGGGGTCA+CGG - chr5_3:55801301-55801320 Msa0819350:intron 55.0%
CACGGTGGAGGTGGTTACAA+TGG - chr5_3:55801286-55801305 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55801289-55801308 Msa0819350:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55801292-55801311 Msa0819350:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_3:55801295-55801314 Msa0819350:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_3:55801289-55801308 Msa0819350:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_3:55801292-55801311 Msa0819350:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_3:55801295-55801314 Msa0819350:intron 55.0%
GGTAGAGGTGGCTACAACCA+CGG - chr5_3:55801505-55801524 Msa0819350:five_prime_UTR 55.0%
GGTGGAGGTGGTTACAACCA+CGG - chr5_3:55801526-55801545 Msa0819350:five_prime_UTR 55.0%
GGAGGGAAGGAGGGAGATGT+AGG + chr5_3:55800450-55800469 None:intergenic 60.0%
! GTCCCTAGCGGACATCACTG+AGG + chr5_3:55800606-55800625 None:intergenic 60.0%
! CACGGTGGTGGCTACAACCA+CGG - chr5_3:55801226-55801245 Msa0819350:intron 60.0%
TGTGGTAACCACCTCCACCG+TGG + chr5_3:55801246-55801265 None:intergenic 60.0%
!! GGTGGTGGCGGTTACAACCA+CGG - chr5_3:55801268-55801287 Msa0819350:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_3:55801277-55801296 Msa0819350:intron 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5_3:55801346-55801365 Msa0819350:intron 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5_3:55801346-55801365 Msa0819350:intron 60.0%
AGAGGTGGCTACAACCACGG+TGG - chr5_3:55801508-55801527 Msa0819350:five_prime_UTR 60.0%
GGTTGTAACCACCTCCACCG+TGG + chr5_3:55801525-55801544 None:intergenic 60.0%
GGAGGTGGTTACAACCACGG+TGG - chr5_3:55801529-55801548 Msa0819350:five_prime_UTR 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5_3:55801532-55801551 Msa0819350:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_3:55801277-55801296 Msa0819350:intron 60.0%
AACCACGGTGGAGGTGGTCA+CGG - chr5_3:55801541-55801560 Msa0819350:five_prime_UTR 60.0%
CATGGTGGCCATGGTGGTCA+CGG - chr5_3:55801577-55801596 Msa0819350:five_prime_UTR 60.0%
CATGGTGGTCACGGTGGACA+CGG - chr5_3:55801586-55801605 Msa0819350:five_prime_UTR 60.0%
!! ACACGGTGCCGACCAAACTG+AGG - chr5_3:55801603-55801622 Msa0819350:five_prime_UTR 60.0%
GGAGGGAAGGAGGGAGATGT+AGG + chr5_3:55800450-55800469 None:intergenic 60.0%
! GTCCCTAGCGGACATCACTG+AGG + chr5_3:55800606-55800625 None:intergenic 60.0%
! CACGGTGGTGGCTACAACCA+CGG - chr5_3:55801226-55801245 Msa0819350:intron 60.0%
TGTGGTAACCACCTCCACCG+TGG + chr5_3:55801246-55801265 None:intergenic 60.0%
!! GGTGGTGGCGGTTACAACCA+CGG - chr5_3:55801268-55801287 Msa0819350:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_3:55801277-55801296 Msa0819350:intron 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5_3:55801346-55801365 Msa0819350:intron 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5_3:55801346-55801365 Msa0819350:intron 60.0%
AGAGGTGGCTACAACCACGG+TGG - chr5_3:55801508-55801527 Msa0819350:five_prime_UTR 60.0%
GGTTGTAACCACCTCCACCG+TGG + chr5_3:55801525-55801544 None:intergenic 60.0%
GGAGGTGGTTACAACCACGG+TGG - chr5_3:55801529-55801548 Msa0819350:five_prime_UTR 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5_3:55801532-55801551 Msa0819350:five_prime_UTR 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_3:55801277-55801296 Msa0819350:intron 60.0%
AACCACGGTGGAGGTGGTCA+CGG - chr5_3:55801541-55801560 Msa0819350:five_prime_UTR 60.0%
CATGGTGGCCATGGTGGTCA+CGG - chr5_3:55801577-55801596 Msa0819350:five_prime_UTR 60.0%
CATGGTGGTCACGGTGGACA+CGG - chr5_3:55801586-55801605 Msa0819350:five_prime_UTR 60.0%
!! ACACGGTGCCGACCAAACTG+AGG - chr5_3:55801603-55801622 Msa0819350:five_prime_UTR 60.0%
! GGTGGCGGCTACAACCATGG+TGG - chr5_3:55801178-55801197 Msa0819350:intron 65.0%
GGCGGCTACAACCATGGTGG+TGG - chr5_3:55801181-55801200 Msa0819350:intron 65.0%
CGTGGTTGTAGCCACCACCG+TGG + chr5_3:55801228-55801247 None:intergenic 65.0%
! GGTGGTGGCTACAACCACGG+TGG - chr5_3:55801229-55801248 Msa0819350:intron 65.0%
GGTGGCTACAACCACGGTGG+AGG - chr5_3:55801232-55801251 Msa0819350:intron 65.0%
GGCTACAACCACGGTGGAGG+TGG - chr5_3:55801235-55801254 Msa0819350:intron 65.0%
! GGTGGCGGTTACAACCACGG+TGG - chr5_3:55801271-55801290 Msa0819350:intron 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_3:55801274-55801293 Msa0819350:intron 65.0%
!! AATGGTGGTGGGGGTCACGG+TGG - chr5_3:55801304-55801323 Msa0819350:intron 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5_3:55801352-55801371 Msa0819350:intron 65.0%
GGAGGTCACGGTGGTCATGG+TGG - chr5_3:55801355-55801374 Msa0819350:intron 65.0%
GGTCACGGTGGTCATGGTGG+AGG - chr5_3:55801358-55801377 Msa0819350:intron 65.0%
! CACGGTGGTCATGGTGGAGG+TGG - chr5_3:55801361-55801380 Msa0819350:intron 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5_3:55801352-55801371 Msa0819350:intron 65.0%
GGAGGTCACGGTGGTCATGG+CGG - chr5_3:55801355-55801374 Msa0819350:intron 65.0%
GGTGGCTACAACCACGGTGG+AGG - chr5_3:55801232-55801251 Msa0819350:intron 65.0%
GGCTACAACCACGGTGGAGG+TGG - chr5_3:55801235-55801254 Msa0819350:intron 65.0%
GGAGGTGGTCACGGTGGACA+CGG - chr5_3:55801550-55801569 Msa0819350:five_prime_UTR 65.0%
CACGGTGGACACGGTGGACA+TGG - chr5_3:55801559-55801578 Msa0819350:five_prime_UTR 65.0%
GGTGGACACGGTGGACATGG+TGG - chr5_3:55801562-55801581 Msa0819350:five_prime_UTR 65.0%
CACGGTGGACATGGTGGCCA+TGG - chr5_3:55801568-55801587 Msa0819350:five_prime_UTR 65.0%
GGTGGACATGGTGGCCATGG+TGG - chr5_3:55801571-55801590 Msa0819350:five_prime_UTR 65.0%
CGTGTCCACCGTGACCACCA+TGG + chr5_3:55801588-55801607 None:intergenic 65.0%
! GGTGGCGGCTACAACCATGG+TGG - chr5_3:55801178-55801197 Msa0819350:intron 65.0%
GGCGGCTACAACCATGGTGG+TGG - chr5_3:55801181-55801200 Msa0819350:intron 65.0%
CGTGGTTGTAGCCACCACCG+TGG + chr5_3:55801228-55801247 None:intergenic 65.0%
! GGTGGTGGCTACAACCACGG+TGG - chr5_3:55801229-55801248 Msa0819350:intron 65.0%
GGTGGCTACAACCACGGTGG+AGG - chr5_3:55801232-55801251 Msa0819350:intron 65.0%
GGCTACAACCACGGTGGAGG+TGG - chr5_3:55801235-55801254 Msa0819350:intron 65.0%
! GGTGGCGGTTACAACCACGG+TGG - chr5_3:55801271-55801290 Msa0819350:intron 65.0%
GGCGGTTACAACCACGGTGG+AGG - chr5_3:55801274-55801293 Msa0819350:intron 65.0%
!! AATGGTGGTGGGGGTCACGG+TGG - chr5_3:55801304-55801323 Msa0819350:intron 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5_3:55801352-55801371 Msa0819350:intron 65.0%
GGAGGTCACGGTGGTCATGG+TGG - chr5_3:55801355-55801374 Msa0819350:intron 65.0%
GGTCACGGTGGTCATGGTGG+AGG - chr5_3:55801358-55801377 Msa0819350:intron 65.0%
! CACGGTGGTCATGGTGGAGG+TGG - chr5_3:55801361-55801380 Msa0819350:intron 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5_3:55801352-55801371 Msa0819350:intron 65.0%
GGAGGTCACGGTGGTCATGG+CGG - chr5_3:55801355-55801374 Msa0819350:intron 65.0%
GGTGGCTACAACCACGGTGG+AGG - chr5_3:55801232-55801251 Msa0819350:intron 65.0%
GGCTACAACCACGGTGGAGG+TGG - chr5_3:55801235-55801254 Msa0819350:intron 65.0%
GGAGGTGGTCACGGTGGACA+CGG - chr5_3:55801550-55801569 Msa0819350:five_prime_UTR 65.0%
CACGGTGGACACGGTGGACA+TGG - chr5_3:55801559-55801578 Msa0819350:five_prime_UTR 65.0%
GGTGGACACGGTGGACATGG+TGG - chr5_3:55801562-55801581 Msa0819350:five_prime_UTR 65.0%
CACGGTGGACATGGTGGCCA+TGG - chr5_3:55801568-55801587 Msa0819350:five_prime_UTR 65.0%
GGTGGACATGGTGGCCATGG+TGG - chr5_3:55801571-55801590 Msa0819350:five_prime_UTR 65.0%
CGTGTCCACCGTGACCACCA+TGG + chr5_3:55801588-55801607 None:intergenic 65.0%
GGTGGGGGTCACGGTGGTCA+CGG - chr5_3:55801310-55801329 Msa0819350:intron 70.0%
GGTCACGGTGGTCACGGTGG+AGG - chr5_3:55801316-55801335 Msa0819350:intron 70.0%
CACGGTGGTCACGGTGGAGG+TGG - chr5_3:55801319-55801338 Msa0819350:intron 70.0%
CACCGTGACCACCTCCACCG+TGG + chr5_3:55801546-55801565 None:intergenic 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5_3:55801544-55801563 Msa0819350:five_prime_UTR 70.0%
GGTGGTCACGGTGGACACGG+TGG - chr5_3:55801553-55801572 Msa0819350:five_prime_UTR 70.0%
GGTGGCCATGGTGGTCACGG+TGG - chr5_3:55801580-55801599 Msa0819350:five_prime_UTR 70.0%
GGTGGGGGTCACGGTGGTCA+CGG - chr5_3:55801310-55801329 Msa0819350:intron 70.0%
GGTCACGGTGGTCACGGTGG+AGG - chr5_3:55801316-55801335 Msa0819350:intron 70.0%
CACGGTGGTCACGGTGGAGG+TGG - chr5_3:55801319-55801338 Msa0819350:intron 70.0%
CACCGTGACCACCTCCACCG+TGG + chr5_3:55801546-55801565 None:intergenic 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5_3:55801544-55801563 Msa0819350:five_prime_UTR 70.0%
GGTGGTCACGGTGGACACGG+TGG - chr5_3:55801553-55801572 Msa0819350:five_prime_UTR 70.0%
GGTGGCCATGGTGGTCACGG+TGG - chr5_3:55801580-55801599 Msa0819350:five_prime_UTR 70.0%
GGGGGTCACGGTGGTCACGG+TGG - chr5_3:55801313-55801332 Msa0819350:intron 75.0%
GGGGGTCACGGTGGTCACGG+TGG - chr5_3:55801313-55801332 Msa0819350:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 55800407 55801642 55800407 ID=Msa0819350;Name=Msa0819350
chr5_3 mRNA 55800407 55801642 55800407 ID=Msa0819350-mRNA-1;Parent=Msa0819350;Name=Msa0819350-mRNA-1;_AED=0.00;_eAED=0.03;_QI=141|1|0.5|1|1|1|2|0|204
chr5_3 exon 55800407 55800912 55800407 ID=Msa0819350-mRNA-1:exon:16865;Parent=Msa0819350-mRNA-1
chr5_3 exon 55801393 55801642 55801393 ID=Msa0819350-mRNA-1:exon:16864;Parent=Msa0819350-mRNA-1
chr5_3 five_prime_UTR 55801502 55801642 55801502 ID=Msa0819350-mRNA-1:five_prime_utr;Parent=Msa0819350-mRNA-1
chr5_3 CDS 55801393 55801501 55801393 ID=Msa0819350-mRNA-1:cds;Parent=Msa0819350-mRNA-1
chr5_3 CDS 55800407 55800912 55800407 ID=Msa0819350-mRNA-1:cds;Parent=Msa0819350-mRNA-1
Gene Sequence

>Msa0819350

ATGGATTCGAAAAAGGCAATCCTCATGCTAAGCCTCTTGGCTATGGCTCTTATTTCCTCAGTGATGTCCGCTAGGGACTTAACTGAAACTTCCACCGATGCTAAAAAGGAGGTTGTTGAAAAGACTAATGAAGTAAATGATGCCAAATATGGTGGCGGCTACAACCATGGTGGTGGTTACAATGGTGGAGGTTATAACCACGGTGGTGGCTACAACCACGGTGGAGGTGGTTACCACAATGGTGGTGGCGGTTACAACCACGGTGGAGGTGGTTACAATGGTGGTGGGGGTCACGGTGGTCACGGTGGAGGTGGTTACAATGGTGGTGGAGGTCACGGTGGTCATGGTGGAGGTGGTTACAATGGTGGTGGAGGTCACGGTGGTCATGGCGGTGCTGAATCTGTTGCCGTGCAAACTGAGGAAAAGACTAATGAAGTAAATGATGCCAAATATGGAGGTGGTAGTAATTACAACGATGGTAGAGGTGGCTACAACCACGGTGGAGGTGGTTACAACCACGGTGGAGGTGGTCACGGTGGACACGGTGGACATGGTGGCCATGGTGGTCACGGTGGACACGGTGCCGACCAAACTGAGGACAACACTCAAAACTGA

Protein sequence

>Msa0819350

MDSKKAILMLSLLAMALISSVMSARDLTETSTDAKKEVVEKTNEVNDAKYGGGYNHGGGYNGGGYNHGGGYNHGGGGYHNGGGGYNHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGGAESVAVQTEEKTNEVNDAKYGGGSNYNDGRGGYNHGGGGYNHGGGGHGGHGGHGGHGGHGGHGADQTEDNTQN*