Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738840 | RHN58108.1 | 96.875 | 192 | 6 | 0 | 1 | 192 | 243 | 434 | 1.81e-130 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738840 | sp|Q94HW2|POLR1_ARATH | 51.813 | 193 | 92 | 1 | 1 | 192 | 1215 | 1407 | 3.75e-57 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738840 | A0A396I046 | 96.875 | 192 | 6 | 0 | 1 | 192 | 243 | 434 | 8.62e-131 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005350 | Msa0738840 | 0.802468 | 5.530644e-49 | -8.615850e-47 |
| Msa0014800 | Msa0738840 | 0.803770 | 2.975327e-49 | -8.615850e-47 |
| Msa0053900 | Msa0738840 | 0.812731 | 3.657132e-51 | -8.615850e-47 |
| Msa0092710 | Msa0738840 | 0.801383 | 9.241949e-49 | -8.615850e-47 |
| Msa0622340 | Msa0738840 | 0.809516 | 1.820319e-50 | -8.615850e-47 |
| Msa0669850 | Msa0738840 | 0.801279 | 9.705882e-49 | -8.615850e-47 |
| Msa0692110 | Msa0738840 | 0.802871 | 4.567010e-49 | -8.615850e-47 |
| Msa0711490 | Msa0738840 | 0.806562 | 7.743955e-50 | -8.615850e-47 |
| Msa0725920 | Msa0738840 | 0.805190 | 1.504503e-49 | -8.615850e-47 |
| Msa0738840 | Msa0738850 | 0.894890 | 1.611048e-75 | -8.615850e-47 |
| Msa0738840 | Msa0738860 | 0.863581 | 2.247668e-64 | -8.615850e-47 |
| Msa0738840 | Msa0738870 | 0.852355 | 4.874182e-61 | -8.615850e-47 |
| Msa0738840 | Msa0738880 | 0.802203 | 6.271779e-49 | -8.615850e-47 |
| Msa0738840 | Msa0783260 | 0.837479 | 5.073038e-57 | -8.615850e-47 |
| Msa0738840 | Msa0783270 | 0.867830 | 1.024579e-65 | -8.615850e-47 |
| Msa0738840 | Msa0819330 | 0.834462 | 2.956377e-56 | -8.615850e-47 |
| Msa0738840 | Msa0819340 | 0.830048 | 3.657841e-55 | -8.615850e-47 |
| Msa0738840 | Msa0819350 | 0.821590 | 3.724501e-53 | -8.615850e-47 |
| Msa0738840 | Msa0819360 | 0.850157 | 2.036284e-60 | -8.615850e-47 |
| Msa0738840 | Msa0819370 | 0.800622 | 1.322009e-48 | -8.615850e-47 |
| Msa0738840 | Msa0846030 | 0.818497 | 1.900339e-52 | -8.615850e-47 |
| Msa0738840 | Msa0859500 | 0.826754 | 2.279941e-54 | -8.615850e-47 |
| Msa0738840 | Msa0859520 | 0.856362 | 3.387657e-62 | -8.615850e-47 |
| Msa0738840 | Msa0859530 | 0.873023 | 2.026126e-67 | -8.615850e-47 |
| Msa0738840 | Msa0871890 | 0.828196 | 1.028421e-54 | -8.615850e-47 |
| Msa0738840 | Msa0874500 | 0.827587 | 1.440805e-54 | -8.615850e-47 |
| Msa0738840 | Msa0877420 | 0.807573 | 4.732373e-50 | -8.615850e-47 |
| Msa0738840 | Msa0899230 | 0.803011 | 4.273141e-49 | -8.615850e-47 |
| Msa0738840 | Msa0905260 | 0.840193 | 1.007808e-57 | -8.615850e-47 |
| Msa0738840 | Msa0922540 | 0.825273 | 5.127578e-54 | -8.615850e-47 |
| Msa0738840 | Msa0937240 | 0.820375 | 7.090113e-53 | -8.615850e-47 |
| Msa0738840 | Msa0942730 | 0.830436 | 2.940258e-55 | -8.615850e-47 |
| Msa0738840 | Msa0958020 | 0.813742 | 2.193709e-51 | -8.615850e-47 |
| Msa0738840 | Msa0974530 | 0.830513 | 2.815526e-55 | -8.615850e-47 |
| Msa0738840 | Msa0979550 | 0.803933 | 2.751006e-49 | -8.615850e-47 |
| Msa0738840 | Msa1002040 | 0.818785 | 1.635594e-52 | -8.615850e-47 |
| Msa0738840 | Msa1060220 | 0.815550 | 8.731059e-52 | -8.615850e-47 |
| Msa0738840 | Msa1157730 | 0.801617 | 8.275500e-49 | -8.615850e-47 |
| Msa0738840 | Msa1218650 | 0.814130 | 1.802200e-51 | -8.615850e-47 |
| Msa0738840 | Msa1224670 | 0.804751 | 1.858334e-49 | -8.615850e-47 |
| Msa0738840 | Msa1235630 | 0.813879 | 2.046857e-51 | -8.615850e-47 |
| Msa0738840 | Msa1303160 | 0.804277 | 2.333422e-49 | -8.615850e-47 |
| Msa0738840 | Msa1315870 | 0.816721 | 4.779866e-52 | -8.615850e-47 |
| Msa0738840 | Msa1382410 | 0.800923 | 1.147542e-48 | -8.615850e-47 |
| Msa0738840 | Msa1390310 | 0.817701 | 2.877305e-52 | -8.615850e-47 |
| Msa0738840 | Msa1419110 | 0.812857 | 3.432730e-51 | -8.615850e-47 |
| Msa0738840 | Msa1439230 | 0.815744 | 7.902754e-52 | -8.615850e-47 |
| Msa0143080 | Msa0738840 | 0.824492 | 7.837180e-54 | -8.615850e-47 |
| Msa0148360 | Msa0738840 | 0.813612 | 2.344061e-51 | -8.615850e-47 |
| Msa0172350 | Msa0738840 | 0.807909 | 4.015272e-50 | -8.615850e-47 |
| Msa0182640 | Msa0738840 | 0.821342 | 4.249671e-53 | -8.615850e-47 |
| Msa0236980 | Msa0738840 | 0.824019 | 1.012511e-53 | -8.615850e-47 |
| Msa0449820 | Msa0738840 | 0.805331 | 1.405619e-49 | -8.615850e-47 |
| Msa0242220 | Msa0738840 | 0.810770 | 9.769014e-51 | -8.615850e-47 |
| Msa0328210 | Msa0738840 | 0.817059 | 4.011941e-52 | -8.615850e-47 |
| Msa0497420 | Msa0738840 | 0.800937 | 1.140148e-48 | -8.615850e-47 |
| Msa0526700 | Msa0738840 | 0.800731 | 1.256280e-48 | -8.615850e-47 |
| Msa0585900 | Msa0738840 | 0.803648 | 3.152882e-49 | -8.615850e-47 |
| Msa0590680 | Msa0738840 | 0.801141 | 1.035770e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738840 | MtrunA17_Chr5g0447551 | 96.875 | 192 | 6 | 0 | 1 | 192 | 243 | 434 | 1.66e-134 | 402 |
| Msa0738840 | MtrunA17_Chr8g0337151 | 48.113 | 212 | 109 | 1 | 1 | 211 | 135 | 346 | 1.50e-59 | 197 |
| Msa0738840 | MtrunA17_Chr5g0395921 | 52.041 | 196 | 89 | 3 | 1 | 192 | 1103 | 1297 | 1.28e-57 | 202 |
| Msa0738840 | MtrunA17_Chr1g0213431 | 49.490 | 196 | 94 | 3 | 1 | 192 | 1224 | 1418 | 1.11e-54 | 194 |
| Msa0738840 | MtrunA17_Chr2g0320651 | 49.490 | 196 | 94 | 3 | 1 | 192 | 1235 | 1429 | 1.31e-54 | 194 |
| Msa0738840 | MtrunA17_Chr3g0122161 | 49.490 | 196 | 94 | 3 | 1 | 192 | 1235 | 1429 | 1.41e-54 | 194 |
| Msa0738840 | MtrunA17_Chr5g0417451 | 50.286 | 175 | 86 | 1 | 18 | 192 | 36 | 209 | 6.14e-54 | 179 |
| Msa0738840 | MtrunA17_Chr7g0271061 | 49.490 | 196 | 94 | 3 | 1 | 192 | 1248 | 1442 | 1.12e-53 | 191 |
| Msa0738840 | MtrunA17_Chr3g0117621 | 49.490 | 196 | 94 | 3 | 1 | 192 | 1248 | 1442 | 1.13e-53 | 191 |
| Msa0738840 | MtrunA17_Chr1g0213471 | 55.263 | 190 | 80 | 4 | 7 | 192 | 154 | 342 | 1.99e-52 | 179 |
| Msa0738840 | MtrunA17_Chr2g0279231 | 48.705 | 193 | 98 | 1 | 1 | 192 | 656 | 848 | 1.26e-50 | 182 |
| Msa0738840 | MtrunA17_Chr8g0363051 | 44.560 | 193 | 106 | 1 | 1 | 192 | 508 | 700 | 1.42e-47 | 172 |
| Msa0738840 | MtrunA17_Chr6g0468801 | 48.108 | 185 | 95 | 1 | 9 | 192 | 537 | 721 | 1.96e-44 | 163 |
| Msa0738840 | MtrunA17_Chr1g0208701 | 47.674 | 172 | 90 | 0 | 21 | 192 | 1065 | 1236 | 5.86e-44 | 162 |
| Msa0738840 | MtrunA17_Chr1g0208691 | 47.674 | 172 | 90 | 0 | 21 | 192 | 1065 | 1236 | 7.82e-44 | 162 |
| Msa0738840 | MtrunA17_Chr2g0302511 | 42.105 | 190 | 109 | 1 | 4 | 192 | 363 | 552 | 1.05e-43 | 160 |
| Msa0738840 | MtrunA17_Chr3g0122931 | 41.885 | 191 | 110 | 1 | 3 | 192 | 771 | 961 | 1.52e-42 | 158 |
| Msa0738840 | MtrunA17_Chr2g0319451 | 50.000 | 158 | 78 | 1 | 7 | 163 | 473 | 630 | 3.80e-41 | 153 |
| Msa0738840 | MtrunA17_Chr2g0326511 | 44.974 | 189 | 103 | 1 | 1 | 188 | 135 | 323 | 7.04e-40 | 145 |
| Msa0738840 | MtrunA17_Chr6g0480691 | 41.969 | 193 | 111 | 1 | 1 | 192 | 242 | 434 | 2.21e-39 | 146 |
| Msa0738840 | MtrunA17_Chr7g0219281 | 44.974 | 189 | 103 | 1 | 1 | 188 | 243 | 431 | 8.73e-39 | 144 |
| Msa0738840 | MtrunA17_Chr6g0478321 | 45.122 | 164 | 89 | 1 | 1 | 163 | 91 | 254 | 6.21e-38 | 137 |
| Msa0738840 | MtrunA17_Chr6g0474211 | 42.487 | 193 | 110 | 1 | 1 | 192 | 518 | 710 | 1.24e-37 | 144 |
| Msa0738840 | MtrunA17_Chr7g0235811 | 37.158 | 183 | 114 | 1 | 6 | 187 | 359 | 541 | 3.15e-35 | 136 |
| Msa0738840 | MtrunA17_Chr7g0248591 | 38.889 | 180 | 105 | 3 | 13 | 189 | 3 | 180 | 6.40e-35 | 128 |
| Msa0738840 | MtrunA17_Chr8g0390891 | 37.436 | 195 | 114 | 5 | 1 | 189 | 724 | 916 | 7.73e-35 | 136 |
| Msa0738840 | MtrunA17_Chr1g0202521 | 48.855 | 131 | 67 | 0 | 58 | 188 | 1 | 131 | 1.92e-34 | 125 |
| Msa0738840 | MtrunA17_Chr3g0144121 | 37.056 | 197 | 118 | 3 | 1 | 192 | 1093 | 1288 | 2.04e-34 | 135 |
| Msa0738840 | MtrunA17_Chr4g0056611 | 35.789 | 190 | 121 | 1 | 4 | 192 | 712 | 901 | 8.08e-34 | 133 |
| Msa0738840 | MtrunA17_Chr3g0107241 | 36.464 | 181 | 114 | 1 | 10 | 189 | 62 | 242 | 8.09e-33 | 123 |
| Msa0738840 | MtrunA17_Chr1g0162991 | 37.805 | 164 | 102 | 0 | 26 | 189 | 194 | 357 | 5.50e-31 | 122 |
| Msa0738840 | MtrunA17_Chr1g0153361 | 38.323 | 167 | 102 | 1 | 26 | 192 | 1484 | 1649 | 1.03e-29 | 121 |
| Msa0738840 | MtrunA17_Chr7g0229241 | 40.994 | 161 | 92 | 2 | 30 | 187 | 1066 | 1226 | 3.40e-29 | 119 |
| Msa0738840 | MtrunA17_Chr5g0416531 | 41.727 | 139 | 80 | 1 | 4 | 141 | 177 | 315 | 8.78e-28 | 111 |
| Msa0738840 | MtrunA17_Chr3g0101191 | 32.857 | 210 | 139 | 2 | 1 | 209 | 1068 | 1276 | 2.85e-27 | 114 |
| Msa0738840 | MtrunA17_Chr1g0168011 | 43.704 | 135 | 76 | 0 | 58 | 192 | 1 | 135 | 7.38e-26 | 103 |
| Msa0738840 | MtrunA17_Chr7g0224631 | 37.107 | 159 | 97 | 2 | 1 | 157 | 1 | 158 | 5.39e-23 | 94.7 |
| Msa0738840 | MtrunA17_Chr3g0085391 | 35.789 | 190 | 100 | 4 | 1 | 188 | 261 | 430 | 8.45e-23 | 99.8 |
| Msa0738840 | MtrunA17_Chr1g0182471 | 37.313 | 134 | 80 | 2 | 58 | 189 | 1 | 132 | 1.70e-22 | 94.0 |
| Msa0738840 | MtrunA17_Chr8g0351191 | 36.816 | 201 | 115 | 6 | 1 | 192 | 530 | 727 | 3.77e-22 | 98.6 |
| Msa0738840 | MtrunA17_Chr7g0214321 | 34.503 | 171 | 86 | 4 | 58 | 205 | 1 | 168 | 1.14e-19 | 85.9 |
| Msa0738840 | MtrunA17_Chr4g0005281 | 40.708 | 113 | 66 | 1 | 76 | 188 | 1 | 112 | 1.28e-19 | 85.5 |
| Msa0738840 | MtrunA17_Chr8g0335561 | 32.520 | 123 | 80 | 1 | 58 | 177 | 1 | 123 | 2.52e-17 | 77.4 |
| Msa0738840 | MtrunA17_Chr2g0321931 | 37.069 | 116 | 67 | 3 | 1 | 111 | 458 | 572 | 8.26e-17 | 82.0 |
| Msa0738840 | MtrunA17_Chr8g0373061 | 36.607 | 112 | 70 | 1 | 1 | 111 | 243 | 354 | 1.88e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738840 | AT4G23160.3 | 41.579 | 190 | 110 | 1 | 4 | 192 | 351 | 540 | 1.05e-41 | 156 |
| Msa0738840 | AT4G23160.2 | 41.579 | 190 | 110 | 1 | 4 | 192 | 351 | 540 | 1.05e-41 | 156 |
| Msa0738840 | ATMG00810.1 | 44.516 | 155 | 86 | 0 | 1 | 155 | 71 | 225 | 3.02e-40 | 143 |
| Msa0738840 | ATMG00240.1 | 38.961 | 77 | 47 | 0 | 39 | 115 | 2 | 78 | 6.98e-13 | 65.1 |
Find 141 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTACCACCACCATATT+TGG | 0.190768 | 5_1:+56866622 | None:intergenic |
| AACTCCCACGGATGCTAAAA+TGG | 0.192011 | 5_1:-56867839 | Msa0738840:CDS |
| GAGCTTCATGTGCCTATTAC+TGG | 0.199567 | 5_1:-56869617 | Msa0738840:CDS |
| TTGGACCGTGTGCTGATAAC+TGG | 0.268257 | 5_1:+56869542 | None:intergenic |
| GGGTCACCAGGTGTTGTTAT+AGG | 0.320481 | 5_1:+56870085 | None:intergenic |
| ACCGACTGTTCGTGTGTATA+AGG | 0.336832 | 5_1:+56870018 | None:intergenic |
| TTTAGCATCCGTGGGAGTTT+CGG | 0.351510 | 5_1:+56867843 | None:intergenic |
| ACACCGCCGCCGAACTGCTT+TGG | 0.355808 | 5_1:-56869658 | Msa0738840:CDS |
| AGCAACAACTTTCTGTTTGC+GGG | 0.382815 | 5_1:+56869718 | None:intergenic |
| AGCGTCTGAATATGCTAAAA+AGG | 0.383978 | 5_1:+56869823 | None:intergenic |
| GACGACAGCCGCTCTCAGTT+TGG | 0.404610 | 5_1:-56869782 | Msa0738840:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.421667 | 5_1:-56866701 | Msa0738840:CDS |
| GTTCGGCGGCGGTGTATGCC+AGG | 0.425096 | 5_1:+56869666 | None:intergenic |
| AGCAACGGAGGACCAGTAAT+AGG | 0.425916 | 5_1:+56869605 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.434415 | 5_1:-56866635 | Msa0738840:CDS |
| AGAATACTTCGCTATCTTGC+TGG | 0.440103 | 5_1:-56869890 | Msa0738840:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5_1:-56866875 | Msa0738840:CDS |
| GGTGGATACAATGGTGGAGG+TGG | 0.457644 | 5_1:-56866797 | Msa0738840:CDS |
| GGACATGGTGGTCACGGTGG+AGG | 0.459029 | 5_1:-56866737 | Msa0738840:CDS |
| GGTGGTTCCCACAATGGTGG+TGG | 0.463795 | 5_1:-56866857 | Msa0738840:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5_1:-56866761 | Msa0738840:CDS |
| GGTTCCCACAATGGTGGTGG+TGG | 0.481730 | 5_1:-56866854 | Msa0738840:CDS |
| CATGGTGGTCACGGTGGAGG+TGG | 0.483528 | 5_1:-56866734 | Msa0738840:CDS |
| TTCAGACGCTGGTTGGATCT+CGG | 0.484057 | 5_1:-56869810 | Msa0738840:CDS |
| GGAGGAGGTCACGGTGGACA+TGG | 0.484304 | 5_1:-56866524 | Msa0738840:CDS |
| TTCACTGCATACGTAATATC+AGG | 0.487320 | 5_1:+56869968 | None:intergenic |
| GGTGGAGGACATGGTGGTCA+CGG | 0.487764 | 5_1:-56866743 | Msa0738840:CDS |
| AATATCAGGTCGGGTGATTG+TGG | 0.493025 | 5_1:+56869982 | None:intergenic |
| TTGCGTGATTTGGACTGAAA+TGG | 0.499286 | 5_1:+56869849 | None:intergenic |
| TACAATGGTGGTGGAGGACA+TGG | 0.501970 | 5_1:-56866752 | Msa0738840:CDS |
| TTTGGATATGCAATCTTCCA+TGG | 0.503440 | 5_1:-56869764 | Msa0738840:CDS |
| ACTCACCGACACTTGATCAT+TGG | 0.504085 | 5_1:-56869925 | Msa0738840:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5_1:-56866716 | Msa0738840:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5_1:-56866710 | Msa0738840:CDS |
| TATGGTGGTGGCTACAACCA+TGG | 0.507284 | 5_1:-56866935 | Msa0738840:CDS |
| ACTCCCACGGATGCTAAAAT+GGG | 0.509864 | 5_1:-56867838 | Msa0738840:intron |
| GTATCCACCACCACCGTTGT+GGG | 0.511667 | 5_1:+56866811 | None:intergenic |
| ACTGTTCGTGTGTATAAGGC+TGG | 0.514052 | 5_1:+56870022 | None:intergenic |
| GAGCAACAACTTTCTGTTTG+CGG | 0.514104 | 5_1:+56869717 | None:intergenic |
| AGCGGTTCCCACAACGGTGG+TGG | 0.515467 | 5_1:-56866818 | Msa0738840:CDS |
| TGCATACGTAATATCAGGTC+GGG | 0.515501 | 5_1:+56869973 | None:intergenic |
| ATGGATATAATCTCATCAGC+TGG | 0.517933 | 5_1:-56869745 | Msa0738840:CDS |
| TTGCTTCTCTGCGACAATGT+TGG | 0.518583 | 5_1:-56869587 | Msa0738840:CDS |
| GGTGGTTACCACAACGGTGG+TGG | 0.518884 | 5_1:-56866896 | Msa0738840:CDS |
| GTAACCACCACCACCATTGT+GGG | 0.524450 | 5_1:+56866850 | None:intergenic |
| AAGATTGAGCCAAAGCAGTT+CGG | 0.524519 | 5_1:+56869649 | None:intergenic |
| GAGCCAAAGCAGTTCGGCGG+CGG | 0.526982 | 5_1:+56869655 | None:intergenic |
| TAGCATATTCAGACGCTGGT+TGG | 0.527123 | 5_1:-56869817 | Msa0738840:CDS |
| AGTTATCACCACGGTGGAGG+TGG | 0.528592 | 5_1:-56866560 | Msa0738840:CDS |
| AGCTGATGAGATTATATCCA+TGG | 0.529789 | 5_1:+56869747 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+AGG | 0.535349 | 5_1:-56866758 | Msa0738840:CDS |
| CTTTGACTAGACGATGTTGT+GGG | 0.543642 | 5_1:+56870065 | None:intergenic |
| TGTATCCACCACCACCGTTG+TGG | 0.544285 | 5_1:+56866810 | None:intergenic |
| GGTTACCACAACGGTGGTGG+TGG | 0.548660 | 5_1:-56866893 | Msa0738840:CDS |
| GGTGGTTACAATGGTGGAAG+CGG | 0.549112 | 5_1:-56866836 | Msa0738840:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5_1:-56866776 | Msa0738840:CDS |
| AGACGATGTTGTGGGTCACC+AGG | 0.556266 | 5_1:+56870073 | None:intergenic |
| GGTGGTTACAACCATGGTGG+AGG | 0.556342 | 5_1:-56866779 | Msa0738840:CDS |
| GATGGCAAACATGGAGGCTA+TGG | 0.556568 | 5_1:-56866953 | Msa0738840:CDS |
| GGAGGTGGTTCCCACAATGG+TGG | 0.557241 | 5_1:-56866860 | Msa0738840:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5_1:-56866719 | Msa0738840:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.562302 | 5_1:-56866542 | Msa0738840:CDS |
| AGTAATTACAACCATGGTGG+AGG | 0.562604 | 5_1:-56866605 | Msa0738840:CDS |
| GAAGTAAATGATGGCAAACA+TGG | 0.562932 | 5_1:-56866962 | Msa0738840:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5_1:-56866725 | Msa0738840:CDS |
| TGGACCGTGTGCTGATAACT+GGG | 0.564215 | 5_1:+56869543 | None:intergenic |
| GATAGTTATCACCACGGTGG+AGG | 0.564481 | 5_1:-56866563 | Msa0738840:CDS |
| GGTTACAACCACGGTGGAGG+AGG | 0.567344 | 5_1:-56866539 | Msa0738840:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.569101 | 5_1:-56866815 | Msa0738840:CDS |
| AAACTGAGAGCGGCTGTCGT+CGG | 0.574693 | 5_1:+56869784 | None:intergenic |
| TGTAACCACCACCACCATTG+TGG | 0.575096 | 5_1:+56866849 | None:intergenic |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5_1:-56866884 | Msa0738840:CDS |
| GCTTTGACTAGACGATGTTG+TGG | 0.579983 | 5_1:+56870064 | None:intergenic |
| AATGGTGGTGGTGGTTACAA+TGG | 0.585769 | 5_1:-56866845 | Msa0738840:CDS |
| AACCACGGTGGAGGAGGTCA+CGG | 0.587057 | 5_1:-56866533 | Msa0738840:CDS |
| AAACATGGAGGCTATGGTGG+TGG | 0.588604 | 5_1:-56866947 | Msa0738840:CDS |
| TGCTCGCTCAAGCACTGAGG+CGG | 0.589107 | 5_1:-56869699 | Msa0738840:CDS |
| AACGGTGGTGGTGGATACAA+TGG | 0.590390 | 5_1:-56866806 | Msa0738840:CDS |
| GGCAAACATGGAGGCTATGG+TGG | 0.590676 | 5_1:-56866950 | Msa0738840:CDS |
| GCCTTATACACACGAACAGT+CGG | 0.596038 | 5_1:-56870019 | Msa0738840:CDS |
| GGTGGAGGTGGTTCCCACAA+TGG | 0.597423 | 5_1:-56866863 | Msa0738840:CDS |
| TGAGGCGGAATATCGATCCC+TGG | 0.597647 | 5_1:-56869684 | Msa0738840:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.597788 | 5_1:-56866767 | Msa0738840:CDS |
| TTCGGCGGCGGTGTATGCCA+GGG | 0.598642 | 5_1:+56869667 | None:intergenic |
| GGTGGTGGATACAATGGTGG+AGG | 0.601928 | 5_1:-56866800 | Msa0738840:CDS |
| GAACAGAATGAAGTAAATGA+TGG | 0.602798 | 5_1:-56866971 | Msa0738840:CDS |
| CAACATCGTCTAGTCAAAGC+GGG | 0.603814 | 5_1:-56870061 | Msa0738840:CDS |
| AACGGTGGTGGTTACCACAA+CGG | 0.607189 | 5_1:-56866902 | Msa0738840:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5_1:-56866878 | Msa0738840:CDS |
| GGTGGTTCTAACAACGGTGG+TGG | 0.610614 | 5_1:-56866914 | Msa0738840:CDS |
| CTGCATACGTAATATCAGGT+CGG | 0.610689 | 5_1:+56869972 | None:intergenic |
| ACATTGTCGCAGAGAAGCAA+CGG | 0.613081 | 5_1:+56869590 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5_1:-56866764 | Msa0738840:CDS |
| TGTAACCACCACCACCGTTG+TGG | 0.615245 | 5_1:+56866888 | None:intergenic |
| GGAGGACATGGTGGTCACGG+TGG | 0.619991 | 5_1:-56866740 | Msa0738840:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.621083 | 5_1:-56866842 | Msa0738840:CDS |
| TATAAGGCTGGATCATCGAA+TGG | 0.627100 | 5_1:+56870034 | None:intergenic |
| GGAATTAACCGAAACTCCCA+CGG | 0.628921 | 5_1:-56867851 | Msa0738840:CDS |
| GGAGGTCACGGTGGACATGG+TGG | 0.636683 | 5_1:-56866521 | Msa0738840:CDS |
| AACCATGGTGGTTCTAACAA+CGG | 0.637384 | 5_1:-56866920 | Msa0738840:CDS |
| GGAGGTCACGGTGGTCATGG+CGG | 0.640286 | 5_1:-56866698 | Msa0738840:CDS |
| AATGATGCCAAATATGGTGG+TGG | 0.641321 | 5_1:-56866629 | Msa0738840:CDS |
| TTGCATATCCAAACTGAGAG+CGG | 0.642281 | 5_1:+56869774 | None:intergenic |
| GGTGGAAGCGGTTCCCACAA+CGG | 0.643438 | 5_1:-56866824 | Msa0738840:CDS |
| GCTGCTCCTATAACAACACC+TGG | 0.646017 | 5_1:-56870091 | Msa0738840:CDS |
| CATTGTAACCACCTCCACCA+TGG | 0.649002 | 5_1:+56866768 | None:intergenic |
| CACCGTTGTTAGAACCACCA+TGG | 0.658554 | 5_1:+56866918 | None:intergenic |
| GCACGCCAATGATCAAGTGT+CGG | 0.670648 | 5_1:+56869920 | None:intergenic |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5_1:-56866881 | Msa0738840:CDS |
| ATCTGTTGCTGTGCAAACTG+AGG | 0.672261 | 5_1:-56866669 | Msa0738840:CDS |
| CACGGTGGAGGAGGTCACGG+TGG | 0.673084 | 5_1:-56866530 | Msa0738840:CDS |
| AATGGTGGTGGAGGACATGG+TGG | 0.676073 | 5_1:-56866749 | Msa0738840:CDS |
| GGTGGAGGTGGTTACAACCA+TGG | 0.679817 | 5_1:-56866785 | Msa0738840:CDS |
| GGTTGTAACTACCTCCACCA+TGG | 0.680661 | 5_1:+56866594 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5_1:-56866722 | Msa0738840:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5_1:-56866548 | Msa0738840:CDS |
| ATTGAGCCAAAGCAGTTCGG+CGG | 0.686785 | 5_1:+56869652 | None:intergenic |
| GTAAATGATGCCAAATATGG+TGG | 0.690340 | 5_1:-56866632 | Msa0738840:CDS |
| TCACAGTGTCGTGCAAACTG+AGG | 0.692802 | 5_1:-56866498 | Msa0738840:CDS |
| CACCGTGACCTCCTCCACCG+TGG | 0.694500 | 5_1:+56866531 | None:intergenic |
| GGTGGTGGTGGATACAATGG+TGG | 0.695355 | 5_1:-56866803 | Msa0738840:CDS |
| ACAACATCGTCTAGTCAAAG+CGG | 0.695519 | 5_1:-56870062 | Msa0738840:CDS |
| GGTGATAACTATCTCCTCCG+TGG | 0.698281 | 5_1:+56866573 | None:intergenic |
| AGAACCCAGTTATCAGCACA+CGG | 0.698774 | 5_1:-56869547 | Msa0738840:intron |
| GGAAGCGGTTCCCACAACGG+TGG | 0.699226 | 5_1:-56866821 | Msa0738840:CDS |
| TTGTCGCAGAGAAGCAACGG+AGG | 0.704406 | 5_1:+56869593 | None:intergenic |
| GTAAATGATGGCAAACATGG+AGG | 0.708480 | 5_1:-56866959 | Msa0738840:CDS |
| GGTAGTAATTACAACCATGG+TGG | 0.715010 | 5_1:-56866608 | Msa0738840:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5_1:-56866707 | Msa0738840:CDS |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5_1:+56866552 | None:intergenic |
| CATGGTGGTTCTAACAACGG+TGG | 0.717643 | 5_1:-56866917 | Msa0738840:CDS |
| TGTTGCTCGCTCAAGCACTG+AGG | 0.723422 | 5_1:-56869702 | Msa0738840:CDS |
| GGTGGTAGTAATTACAACCA+TGG | 0.728765 | 5_1:-56866611 | Msa0738840:CDS |
| GGTGGAGGTAGTTACAACCA+CGG | 0.730738 | 5_1:-56866590 | Msa0738840:CDS |
| GGTGGTGGTTACCACAACGG+TGG | 0.736391 | 5_1:-56866899 | Msa0738840:CDS |
| GGAGGTGGTTACAACCATGG+TGG | 0.740649 | 5_1:-56866782 | Msa0738840:CDS |
| GGTGGTGGCTACAACCATGG+TGG | 0.744120 | 5_1:-56866932 | Msa0738840:CDS |
| GGAGATAGTTATCACCACGG+TGG | 0.759520 | 5_1:-56866566 | Msa0738840:CDS |
| GGAGGAGATAGTTATCACCA+CGG | 0.770033 | 5_1:-56866569 | Msa0738840:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5_1:-56866545 | Msa0738840:CDS |
| GGAGGTAGTTACAACCACGG+AGG | 0.812225 | 5_1:-56866587 | Msa0738840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATATTAAAGAGAA+TGG | + | chr5_1:56867456-56867475 | None:intergenic | 10.0% |
| !! | ATATTTCTTATAAATAAGAT+CGG | + | chr5_1:56867615-56867634 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTATACATAAAT+AGG | - | chr5_1:56868237-56868256 | Msa0738840:intron | 10.0% |
| !!! | ATTAATTTCTACTTTTTTAA+AGG | - | chr5_1:56868824-56868843 | Msa0738840:intron | 10.0% |
| !! | GAATATATAATTATATCATA+TGG | + | chr5_1:56868987-56869006 | None:intergenic | 10.0% |
| !!! | TTTTATTACAAATAAATTGA+GGG | + | chr5_1:56869338-56869357 | None:intergenic | 10.0% |
| !!! | ATTTTATTACAAATAAATTG+AGG | + | chr5_1:56869339-56869358 | None:intergenic | 10.0% |
| !! | TATTTGTAATAAAATAAAAG+TGG | - | chr5_1:56869344-56869363 | Msa0738840:intron | 10.0% |
| !! | ATTTGTAATAAAATAAAAGT+GGG | - | chr5_1:56869345-56869364 | Msa0738840:intron | 10.0% |
| !! | AAAAAAAAAAAAAAACATGA+TGG | + | chr5_1:56869511-56869530 | None:intergenic | 10.0% |
| !! | ATATCATTAGATAATTAATA+AGG | + | chr5_1:56869555-56869574 | None:intergenic | 10.0% |
| !!! | AATATATATTGTTTTTTTAG+AGG | - | chr5_1:56869582-56869601 | Msa0738840:CDS | 10.0% |
| !! | ATAATTATATTTGCTTCAAA+CGG | + | chr5_1:56867570-56867589 | None:intergenic | 15.0% |
| !! | TATTGATATTTCTCTTTATA+TGG | + | chr5_1:56868157-56868176 | None:intergenic | 15.0% |
| !!! | ATTTTATGTATAATAGTGAT+CGG | + | chr5_1:56868408-56868427 | None:intergenic | 15.0% |
| !!! | GTTTTAAATAATCAAAATGA+AGG | - | chr5_1:56869442-56869461 | Msa0738840:intron | 15.0% |
| !!! | TAAAAATGCACATTTTTATT+TGG | + | chr5_1:56869478-56869497 | None:intergenic | 15.0% |
| !! | GTAAGAGAAAAATAAGTAAA+AGG | + | chr5_1:56867486-56867505 | None:intergenic | 20.0% |
| !! | GAAGCAAATATAATTATAGA+AGG | - | chr5_1:56867573-56867592 | Msa0738840:intron | 20.0% |
| !!! | TTTTTAGCAAAAGAGTATTA+CGG | + | chr5_1:56867783-56867802 | None:intergenic | 20.0% |
| !!! | TTATACAACTATCTCTTTTT+TGG | - | chr5_1:56867978-56867997 | Msa0738840:intron | 20.0% |
| !! | AATTTCATAAAAGATGTATC+TGG | - | chr5_1:56868443-56868462 | Msa0738840:intron | 20.0% |
| !!! | CAAAAGTAAACCTTTTTATT+TGG | - | chr5_1:56869155-56869174 | Msa0738840:intron | 20.0% |
| !!! | ATTTTTCTGTCCAAATAAAA+AGG | + | chr5_1:56869168-56869187 | None:intergenic | 20.0% |
| !!! | TTTAAATTAGTTTACACTAG+TGG | + | chr5_1:56869197-56869216 | None:intergenic | 20.0% |
| !!! | ATTTAAAACTAATAGTCTGA+GGG | + | chr5_1:56869431-56869450 | None:intergenic | 20.0% |
| !!! | TATTTAAAACTAATAGTCTG+AGG | + | chr5_1:56869432-56869451 | None:intergenic | 20.0% |
| ! | AAGAAAAGAAACTCTATCTT+TGG | + | chr5_1:56867178-56867197 | None:intergenic | 25.0% |
| ! | TGATAATTCATTGATCAATG+TGG | + | chr5_1:56867425-56867444 | None:intergenic | 25.0% |
| ! | TTCTTATAAATAAGATCGGA+GGG | + | chr5_1:56867611-56867630 | None:intergenic | 25.0% |
| ! | TTTCTTATAAATAAGATCGG+AGG | + | chr5_1:56867612-56867631 | None:intergenic | 25.0% |
| ! | AAACATATTATGAATGTGTC+TGG | - | chr5_1:56867820-56867839 | Msa0738840:intron | 25.0% |
| !! | AAAAATTGAAAATGGTGATG+AGG | + | chr5_1:56867945-56867964 | None:intergenic | 25.0% |
| ! | AGGCTATGAAAAATTGAAAA+TGG | + | chr5_1:56867953-56867972 | None:intergenic | 25.0% |
| !! | TTTCAATTTTTCATAGCCTT+TGG | - | chr5_1:56867954-56867973 | Msa0738840:intron | 25.0% |
| ! | GCATAAAATATACAAGGTTT+GGG | + | chr5_1:56868017-56868036 | None:intergenic | 25.0% |
| ! | TGCATAAAATATACAAGGTT+TGG | + | chr5_1:56868018-56868037 | None:intergenic | 25.0% |
| ! | GACAATGCATAAAATATACA+AGG | + | chr5_1:56868023-56868042 | None:intergenic | 25.0% |
| ! | CATAATAGAAAGAGTTGTAA+AGG | + | chr5_1:56868074-56868093 | None:intergenic | 25.0% |
| !! | ATCAACTAGATCACTTATTT+TGG | - | chr5_1:56868300-56868319 | Msa0738840:intron | 25.0% |
| ! | ATCTGTTCAAATGTGATATT+TGG | + | chr5_1:56868628-56868647 | None:intergenic | 25.0% |
| ! | TTTGAACAGATATTGAACAA+TGG | - | chr5_1:56868637-56868656 | Msa0738840:intron | 25.0% |
| !! | TTGAACAATGGATTCAAAAA+AGG | - | chr5_1:56868649-56868668 | Msa0738840:intron | 25.0% |
| ! | TAGTATATTAAATATCCCTC+AGG | - | chr5_1:56869225-56869244 | Msa0738840:intron | 25.0% |
| !! | TTTTATAACAAATAGCCTGA+GGG | + | chr5_1:56869243-56869262 | None:intergenic | 25.0% |
| !! | ATTTTATAACAAATAGCCTG+AGG | + | chr5_1:56869244-56869263 | None:intergenic | 25.0% |
| !! | AATGTGCATTTTTACTAACT+TGG | - | chr5_1:56869484-56869503 | Msa0738840:intron | 25.0% |
| !! | AAGTGGTTTGGTGAATATAT+CGG | + | chr5_1:56867154-56867173 | None:intergenic | 30.0% |
| GAAACTGAATGCTAATACTA+AGG | + | chr5_1:56867366-56867385 | None:intergenic | 30.0% | |
| GAGATAGTTGTATAAACCAA+AGG | + | chr5_1:56867973-56867992 | None:intergenic | 30.0% | |
| !!! | GATCACTTATTTTGGAACAA+AGG | - | chr5_1:56868308-56868327 | Msa0738840:intron | 30.0% |
| ! | TGTGCTCTATATATAATGGA+GGG | + | chr5_1:56868576-56868595 | None:intergenic | 30.0% |
| GAAGTGTGCTCTATATATAA+TGG | + | chr5_1:56868580-56868599 | None:intergenic | 30.0% | |
| TCAAATGTGATATTTGGTAG+TGG | + | chr5_1:56868622-56868641 | None:intergenic | 30.0% | |
| TCGGTTCAATTTGATATACA+TGG | - | chr5_1:56869088-56869107 | Msa0738840:intron | 30.0% | |
| CGGTTCAATTTGATATACAT+GGG | - | chr5_1:56869089-56869108 | Msa0738840:intron | 30.0% | |
| GAACAGAATGAAGTAAATGA+TGG | - | chr5_1:56869610-56869629 | Msa0738840:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5_1:56869946-56869965 | Msa0738840:CDS | 30.0% | |
| TTCACTGCATACGTAATATC+AGG | + | chr5_1:56866616-56866635 | None:intergenic | 35.0% | |
| AAAAAGGAAGTTGCGTGATT+TGG | + | chr5_1:56866745-56866764 | None:intergenic | 35.0% | |
| AGCGTCTGAATATGCTAAAA+AGG | + | chr5_1:56866761-56866780 | None:intergenic | 35.0% | |
| !! | TTTTTAGCATATTCAGACGC+TGG | - | chr5_1:56866760-56866779 | Msa0738840:CDS | 35.0% |
| TTTGGATATGCAATCTTCCA+TGG | - | chr5_1:56866817-56866836 | Msa0738840:CDS | 35.0% | |
| AGCTGATGAGATTATATCCA+TGG | + | chr5_1:56866837-56866856 | None:intergenic | 35.0% | |
| ATGGATATAATCTCATCAGC+TGG | - | chr5_1:56866836-56866855 | Msa0738840:CDS | 35.0% | |
| ! | TCTATCTTTGGAAAGTGGTT+TGG | + | chr5_1:56867166-56867185 | None:intergenic | 35.0% |
| ! | GAAACTCTATCTTTGGAAAG+TGG | + | chr5_1:56867171-56867190 | None:intergenic | 35.0% |
| TGAATGCTAATACTAAGGAG+TGG | + | chr5_1:56867361-56867380 | None:intergenic | 35.0% | |
| !! | TTAGCAAAAGAGTATTACGG+AGG | + | chr5_1:56867780-56867799 | None:intergenic | 35.0% |
| TTTGAATGTATGTATCTCCG+TGG | - | chr5_1:56867848-56867867 | Msa0738840:CDS | 35.0% | |
| TTGAATGTATGTATCTCCGT+GGG | - | chr5_1:56867849-56867868 | Msa0738840:CDS | 35.0% | |
| !!! | ACGTTTTGAAAGCATGCTAT+TGG | + | chr5_1:56867894-56867913 | None:intergenic | 35.0% |
| !!! | ACAACTATCTCTTTTTTGGC+CGG | - | chr5_1:56867982-56868001 | Msa0738840:intron | 35.0% |
| AAGAGTTGTAAAGGTCATAG+TGG | + | chr5_1:56868065-56868084 | None:intergenic | 35.0% | |
| ! | CTCTATATATAATGGAGGGA+AGG | + | chr5_1:56868572-56868591 | None:intergenic | 35.0% |
| GTGTGCTCTATATATAATGG+AGG | + | chr5_1:56868577-56868596 | None:intergenic | 35.0% | |
| AAAAAGGCAATCCTTATGCT+AGG | - | chr5_1:56868665-56868684 | Msa0738840:intron | 35.0% | |
| GAAGTAAATGATGGCAAACA+TGG | - | chr5_1:56869619-56869638 | Msa0738840:CDS | 35.0% | |
| GTAAATGATGCCAAATATGG+TGG | - | chr5_1:56869949-56869968 | Msa0738840:CDS | 35.0% | |
| ATTACTACCACCACCATATT+TGG | + | chr5_1:56869962-56869981 | None:intergenic | 35.0% | |
| CTTTGACTAGACGATGTTGT+GGG | + | chr5_1:56866519-56866538 | None:intergenic | 40.0% | |
| ACAACATCGTCTAGTCAAAG+CGG | - | chr5_1:56866519-56866538 | Msa0738840:CDS | 40.0% | |
| TATAAGGCTGGATCATCGAA+TGG | + | chr5_1:56866550-56866569 | None:intergenic | 40.0% | |
| TGCATACGTAATATCAGGTC+GGG | + | chr5_1:56866611-56866630 | None:intergenic | 40.0% | |
| CTGCATACGTAATATCAGGT+CGG | + | chr5_1:56866612-56866631 | None:intergenic | 40.0% | |
| AGAATACTTCGCTATCTTGC+TGG | - | chr5_1:56866691-56866710 | Msa0738840:CDS | 40.0% | |
| ! | TTGCGTGATTTGGACTGAAA+TGG | + | chr5_1:56866735-56866754 | None:intergenic | 40.0% |
| TTGCATATCCAAACTGAGAG+CGG | + | chr5_1:56866810-56866829 | None:intergenic | 40.0% | |
| AGCAACAACTTTCTGTTTGC+GGG | + | chr5_1:56866866-56866885 | None:intergenic | 40.0% | |
| GAGCAACAACTTTCTGTTTG+CGG | + | chr5_1:56866867-56866886 | None:intergenic | 40.0% | |
| AAGATTGAGCCAAAGCAGTT+CGG | + | chr5_1:56866935-56866954 | None:intergenic | 40.0% | |
| AAAGTCTAGCGCAATATGCT+TGG | + | chr5_1:56867061-56867080 | None:intergenic | 40.0% | |
| CTTTCACTTCATTTGTGACC+AGG | - | chr5_1:56867077-56867096 | Msa0738840:intron | 40.0% | |
| !! | ATTTGTGACCAGGTTGATTC+CGG | - | chr5_1:56867087-56867106 | Msa0738840:intron | 40.0% |
| GATTCCGGTACTCTCAAAAT+TGG | - | chr5_1:56867102-56867121 | Msa0738840:intron | 40.0% | |
| ! | TATATCGGCTAGCTGATCAA+CGG | + | chr5_1:56867139-56867158 | None:intergenic | 40.0% |
| CCTATTCCACTAACGTTACT+TGG | + | chr5_1:56867282-56867301 | None:intergenic | 40.0% | |
| CCAAGTAACGTTAGTGGAAT+AGG | - | chr5_1:56867279-56867298 | Msa0738840:intron | 40.0% | |
| AACGTTACTGGCATGAAAGT+AGG | + | chr5_1:56867318-56867337 | None:intergenic | 40.0% | |
| TTTCATGCCAGTAACGTTAG+TGG | - | chr5_1:56867320-56867339 | Msa0738840:intron | 40.0% | |
| ACCTATTCCACTAACGTTAC+TGG | + | chr5_1:56867283-56867302 | None:intergenic | 40.0% | |
| AGTAACGTTAGTGGAATAGG+TGG | - | chr5_1:56867282-56867301 | Msa0738840:intron | 40.0% | |
| GTAACGTTAGTGGAATAGGT+GGG | - | chr5_1:56867283-56867302 | Msa0738840:intron | 40.0% | |
| ! | GCTTTCAAAACGTCACTTTC+AGG | - | chr5_1:56867901-56867920 | Msa0738840:intron | 40.0% |
| !!! | CAACTATCTCTTTTTTGGCC+GGG | - | chr5_1:56867983-56868002 | Msa0738840:intron | 40.0% |
| ! | AAGGTTTGGGATTCAAATCC+CGG | + | chr5_1:56868004-56868023 | None:intergenic | 40.0% |
| TGGACTTAGCTCAACTGATT+GGG | + | chr5_1:56868045-56868064 | None:intergenic | 40.0% | |
| ! | CATTCACTTGCTAGTTGAGA+AGG | + | chr5_1:56868530-56868549 | None:intergenic | 40.0% |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5_1:56868691-56868710 | None:intergenic | 40.0% | |
| GTGGGTCTAAGTTAGCAAAT+TGG | - | chr5_1:56869363-56869382 | Msa0738840:intron | 40.0% | |
| GTAAATGATGGCAAACATGG+AGG | - | chr5_1:56869622-56869641 | Msa0738840:CDS | 40.0% | |
| !! | AACCATGGTGGTTCTAACAA+CGG | - | chr5_1:56869661-56869680 | Msa0738840:CDS | 40.0% |
| AATGATGCCAAATATGGTGG+TGG | - | chr5_1:56869952-56869971 | Msa0738840:CDS | 40.0% | |
| GGTGGTAGTAATTACAACCA+TGG | - | chr5_1:56869970-56869989 | Msa0738840:CDS | 40.0% | |
| GGTAGTAATTACAACCATGG+TGG | - | chr5_1:56869973-56869992 | Msa0738840:CDS | 40.0% | |
| AGTAATTACAACCATGGTGG+AGG | - | chr5_1:56869976-56869995 | Msa0738840:CDS | 40.0% | |
| GCTTTGACTAGACGATGTTG+TGG | + | chr5_1:56866520-56866539 | None:intergenic | 45.0% | |
| CAACATCGTCTAGTCAAAGC+GGG | - | chr5_1:56866520-56866539 | Msa0738840:CDS | 45.0% | |
| ACTGTTCGTGTGTATAAGGC+TGG | + | chr5_1:56866562-56866581 | None:intergenic | 45.0% | |
| GCCTTATACACACGAACAGT+CGG | - | chr5_1:56866562-56866581 | Msa0738840:CDS | 45.0% | |
| ACCGACTGTTCGTGTGTATA+AGG | + | chr5_1:56866566-56866585 | None:intergenic | 45.0% | |
| AATATCAGGTCGGGTGATTG+TGG | + | chr5_1:56866602-56866621 | None:intergenic | 45.0% | |
| ACTCACCGACACTTGATCAT+TGG | - | chr5_1:56866656-56866675 | Msa0738840:CDS | 45.0% | |
| TAGCATATTCAGACGCTGGT+TGG | - | chr5_1:56866764-56866783 | Msa0738840:CDS | 45.0% | |
| GAGCTTCATGTGCCTATTAC+TGG | - | chr5_1:56866964-56866983 | Msa0738840:CDS | 45.0% | |
| ACATTGTCGCAGAGAAGCAA+CGG | + | chr5_1:56866994-56867013 | None:intergenic | 45.0% | |
| TTGCTTCTCTGCGACAATGT+TGG | - | chr5_1:56866994-56867013 | Msa0738840:intron | 45.0% | |
| AGAACCCAGTTATCAGCACA+CGG | - | chr5_1:56867034-56867053 | Msa0738840:intron | 45.0% | |
| !! | GTGGCCAATTTTGAGAGTAC+CGG | + | chr5_1:56867109-56867128 | None:intergenic | 45.0% |
| ATTCGGAAGAACTCGAAGCT+TGG | + | chr5_1:56867205-56867224 | None:intergenic | 45.0% | |
| ! | TTCCGAATCATCAGCTTGCT+GGG | - | chr5_1:56867217-56867236 | Msa0738840:intron | 45.0% |
| ACGTTACTTGGCAGGAAAGT+AGG | + | chr5_1:56867270-56867289 | None:intergenic | 45.0% | |
| TTCCTGCCAAGTAACGTTAG+TGG | - | chr5_1:56867273-56867292 | Msa0738840:intron | 45.0% | |
| TTCCACTAACGTTACTTGGC+AGG | + | chr5_1:56867278-56867297 | None:intergenic | 45.0% | |
| GCCAGTAACGTTAGTGGAAT+AGG | - | chr5_1:56867326-56867345 | Msa0738840:intron | 45.0% | |
| GTACTAGCTATCTCATCCCA+CGG | + | chr5_1:56867868-56867887 | None:intergenic | 45.0% | |
| GTGGACTTAGCTCAACTGAT+TGG | + | chr5_1:56868046-56868065 | None:intergenic | 45.0% | |
| ! | TATAATGGAGGGAAGGAGTG+AGG | + | chr5_1:56868565-56868584 | None:intergenic | 45.0% |
| AATCCTTATGCTAGGCCTCT+TGG | - | chr5_1:56868673-56868692 | Msa0738840:intron | 45.0% | |
| ! | GGCTATGGCTCTTATTTCCT+CGG | - | chr5_1:56868694-56868713 | Msa0738840:intron | 45.0% |
| AGTTTCGGTTAATTCCCTGG+AGG | + | chr5_1:56868726-56868745 | None:intergenic | 45.0% | |
| GGAATTAACCGAAACTCCCA+CGG | - | chr5_1:56868730-56868749 | Msa0738840:intron | 45.0% | |
| TTTAGCATCCGTGGGAGTTT+CGG | + | chr5_1:56868741-56868760 | None:intergenic | 45.0% | |
| AACTCCCACGGATGCTAAAA+TGG | - | chr5_1:56868742-56868761 | Msa0738840:intron | 45.0% | |
| ACTCCCACGGATGCTAAAAT+GGG | - | chr5_1:56868743-56868762 | Msa0738840:intron | 45.0% | |
| !! | TCACCCATTTTAGCATCCGT+GGG | + | chr5_1:56868749-56868768 | None:intergenic | 45.0% |
| !! | AATGGTGGTGGTGGTTACAA+TGG | - | chr5_1:56869736-56869755 | Msa0738840:CDS | 45.0% |
| ATCTGTTGCTGTGCAAACTG+AGG | - | chr5_1:56869912-56869931 | Msa0738840:CDS | 45.0% | |
| GGAGGAGATAGTTATCACCA+CGG | - | chr5_1:56870012-56870031 | Msa0738840:CDS | 45.0% | |
| !! | AAATTATTCAAATATTATAT+CGG | - | chr5_1:56869069-56869088 | Msa0738840:intron | 5.0% |
| GCTGCTCCTATAACAACACC+TGG | - | chr5_1:56866490-56866509 | Msa0738840:CDS | 50.0% | |
| !! | GGGTCACCAGGTGTTGTTAT+AGG | + | chr5_1:56866499-56866518 | None:intergenic | 50.0% |
| GCACGCCAATGATCAAGTGT+CGG | + | chr5_1:56866664-56866683 | None:intergenic | 50.0% | |
| ! | TTCAGACGCTGGTTGGATCT+CGG | - | chr5_1:56866771-56866790 | Msa0738840:CDS | 50.0% |
| ATTGAGCCAAAGCAGTTCGG+CGG | + | chr5_1:56866932-56866951 | None:intergenic | 50.0% | |
| AGCAACGGAGGACCAGTAAT+AGG | + | chr5_1:56866979-56866998 | None:intergenic | 50.0% | |
| ! | TGGACCGTGTGCTGATAACT+GGG | + | chr5_1:56867041-56867060 | None:intergenic | 50.0% |
| ! | TTGGACCGTGTGCTGATAAC+TGG | + | chr5_1:56867042-56867061 | None:intergenic | 50.0% |
| !! | TGAGAGTACCGGAATCAACC+TGG | + | chr5_1:56867098-56867117 | None:intergenic | 50.0% |
| GCTGATCAACGGATGATACG+TGG | + | chr5_1:56867128-56867147 | None:intergenic | 50.0% | |
| CTTCCGAATCATCAGCTTGC+TGG | - | chr5_1:56867216-56867235 | Msa0738840:intron | 50.0% | |
| !! | TCCGAATCATCAGCTTGCTG+GGG | - | chr5_1:56867218-56867237 | Msa0738840:intron | 50.0% |
| GAAGGAGTGAGGTGATGTAG+GGG | + | chr5_1:56868554-56868573 | None:intergenic | 50.0% | |
| GGAAGGAGTGAGGTGATGTA+GGG | + | chr5_1:56868555-56868574 | None:intergenic | 50.0% | |
| TAGCCAAGAGGCCTAGCATA+AGG | + | chr5_1:56868679-56868698 | None:intergenic | 50.0% | |
| TATGCTAGGCCTCTTGGCTA+TGG | - | chr5_1:56868679-56868698 | Msa0738840:intron | 50.0% | |
| GGGAGTTTCGGTTAATTCCC+TGG | + | chr5_1:56868729-56868748 | None:intergenic | 50.0% | |
| !! | CTCACCCATTTTAGCATCCG+TGG | + | chr5_1:56868750-56868769 | None:intergenic | 50.0% |
| GATGGCAAACATGGAGGCTA+TGG | - | chr5_1:56869628-56869647 | Msa0738840:CDS | 50.0% | |
| AAACATGGAGGCTATGGTGG+TGG | - | chr5_1:56869634-56869653 | Msa0738840:CDS | 50.0% | |
| !! | TATGGTGGTGGCTACAACCA+TGG | - | chr5_1:56869646-56869665 | Msa0738840:CDS | 50.0% |
| CACCGTTGTTAGAACCACCA+TGG | + | chr5_1:56869666-56869685 | None:intergenic | 50.0% | |
| !! | CATGGTGGTTCTAACAACGG+TGG | - | chr5_1:56869664-56869683 | Msa0738840:CDS | 50.0% |
| ! | AACGGTGGTGGTTACCACAA+CGG | - | chr5_1:56869679-56869698 | Msa0738840:CDS | 50.0% |
| !! | AACGGTGGTGGTGGTTACAA+TGG | - | chr5_1:56869697-56869716 | Msa0738840:CDS | 50.0% |
| GTAACCACCACCACCATTGT+GGG | + | chr5_1:56869734-56869753 | None:intergenic | 50.0% | |
| TGTAACCACCACCACCATTG+TGG | + | chr5_1:56869735-56869754 | None:intergenic | 50.0% | |
| ! | GGTGGTTACAATGGTGGAAG+CGG | - | chr5_1:56869745-56869764 | Msa0738840:CDS | 50.0% |
| !! | AACGGTGGTGGTGGATACAA+TGG | - | chr5_1:56869775-56869794 | Msa0738840:CDS | 50.0% |
| CATTGTAACCACCTCCACCA+TGG | + | chr5_1:56869816-56869835 | None:intergenic | 50.0% | |
| ! | CATGGTGGAGGTGGTTACAA+TGG | - | chr5_1:56869814-56869833 | Msa0738840:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGACA+TGG | - | chr5_1:56869829-56869848 | Msa0738840:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5_1:56869871-56869890 | Msa0738840:CDS | 50.0% |
| GGTTGTAACTACCTCCACCA+TGG | + | chr5_1:56869990-56870009 | None:intergenic | 50.0% | |
| GGTGGAGGTAGTTACAACCA+CGG | - | chr5_1:56869991-56870010 | Msa0738840:CDS | 50.0% | |
| GGTGATAACTATCTCCTCCG+TGG | + | chr5_1:56870011-56870030 | None:intergenic | 50.0% | |
| GGAGATAGTTATCACCACGG+TGG | - | chr5_1:56870015-56870034 | Msa0738840:CDS | 50.0% | |
| GATAGTTATCACCACGGTGG+AGG | - | chr5_1:56870018-56870037 | Msa0738840:CDS | 50.0% | |
| TCACAGTGTCGTGCAAACTG+AGG | - | chr5_1:56870083-56870102 | Msa0738840:CDS | 50.0% | |
| AGACGATGTTGTGGGTCACC+AGG | + | chr5_1:56866511-56866530 | None:intergenic | 55.0% | |
| AAACTGAGAGCGGCTGTCGT+CGG | + | chr5_1:56866800-56866819 | None:intergenic | 55.0% | |
| ! | TGTTGCTCGCTCAAGCACTG+AGG | - | chr5_1:56866879-56866898 | Msa0738840:CDS | 55.0% |
| TGAGGCGGAATATCGATCCC+TGG | - | chr5_1:56866897-56866916 | Msa0738840:CDS | 55.0% | |
| TTGTCGCAGAGAAGCAACGG+AGG | + | chr5_1:56866991-56867010 | None:intergenic | 55.0% | |
| CCCCCAGCAAGCTGATGATT+CGG | + | chr5_1:56867222-56867241 | None:intergenic | 55.0% | |
| !! | CCGAATCATCAGCTTGCTGG+GGG | - | chr5_1:56867219-56867238 | Msa0738840:intron | 55.0% |
| !! | CGAATCATCAGCTTGCTGGG+GGG | - | chr5_1:56867220-56867239 | Msa0738840:intron | 55.0% |
| GGGAAGGAGTGAGGTGATGT+AGG | + | chr5_1:56868556-56868575 | None:intergenic | 55.0% | |
| TTTCCTCGGTGATGTCCTCC+AGG | - | chr5_1:56868708-56868727 | Msa0738840:intron | 55.0% | |
| TTCCTCGGTGATGTCCTCCA+GGG | - | chr5_1:56868709-56868728 | Msa0738840:intron | 55.0% | |
| GGCAAACATGGAGGCTATGG+TGG | - | chr5_1:56869631-56869650 | Msa0738840:CDS | 55.0% | |
| !! | GGTGGTTCTAACAACGGTGG+TGG | - | chr5_1:56869667-56869686 | Msa0738840:CDS | 55.0% |
| TGTAACCACCACCACCGTTG+TGG | + | chr5_1:56869696-56869715 | None:intergenic | 55.0% | |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5_1:56869700-56869719 | Msa0738840:CDS | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5_1:56869703-56869722 | Msa0738840:CDS | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5_1:56869706-56869725 | Msa0738840:CDS | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5_1:56869700-56869719 | Msa0738840:CDS | 55.0% |
| GTATCCACCACCACCGTTGT+GGG | + | chr5_1:56869773-56869792 | None:intergenic | 55.0% | |
| TGTATCCACCACCACCGTTG+TGG | + | chr5_1:56869774-56869793 | None:intergenic | 55.0% | |
| !! | GGTGGTGGTGGATACAATGG+TGG | - | chr5_1:56869778-56869797 | Msa0738840:CDS | 55.0% |
| !! | GGTGGTGGATACAATGGTGG+AGG | - | chr5_1:56869781-56869800 | Msa0738840:CDS | 55.0% |
| ! | GGTGGATACAATGGTGGAGG+TGG | - | chr5_1:56869784-56869803 | Msa0738840:CDS | 55.0% |
| GGTGGAGGTGGTTACAACCA+TGG | - | chr5_1:56869796-56869815 | Msa0738840:CDS | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | - | chr5_1:56869799-56869818 | Msa0738840:CDS | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | - | chr5_1:56869802-56869821 | Msa0738840:CDS | 55.0% | |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5_1:56869805-56869824 | Msa0738840:CDS | 55.0% |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5_1:56869817-56869836 | Msa0738840:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5_1:56869820-56869839 | Msa0738840:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5_1:56869823-56869842 | Msa0738840:CDS | 55.0% |
| !! | AATGGTGGTGGAGGACATGG+TGG | - | chr5_1:56869832-56869851 | Msa0738840:CDS | 55.0% |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5_1:56869856-56869875 | Msa0738840:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5_1:56869817-56869836 | Msa0738840:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5_1:56869820-56869839 | Msa0738840:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5_1:56869823-56869842 | Msa0738840:CDS | 55.0% |
| GGAGGTAGTTACAACCACGG+AGG | - | chr5_1:56869994-56870013 | Msa0738840:CDS | 55.0% | |
| AGTTATCACCACGGTGGAGG+TGG | - | chr5_1:56870021-56870040 | Msa0738840:CDS | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | - | chr5_1:56869796-56869815 | Msa0738840:CDS | 55.0% | |
| GACGACAGCCGCTCTCAGTT+TGG | - | chr5_1:56866799-56866818 | Msa0738840:CDS | 60.0% | |
| !! | TGCTCGCTCAAGCACTGAGG+CGG | - | chr5_1:56866882-56866901 | Msa0738840:CDS | 60.0% |
| TTCCCTGGAGGACATCACCG+AGG | + | chr5_1:56868714-56868733 | None:intergenic | 60.0% | |
| ! | GGTGGTGGCTACAACCATGG+TGG | - | chr5_1:56869649-56869668 | Msa0738840:CDS | 60.0% |
| ! | GGTGGTGGTTACCACAACGG+TGG | - | chr5_1:56869682-56869701 | Msa0738840:CDS | 60.0% |
| GGTGGTTACCACAACGGTGG+TGG | - | chr5_1:56869685-56869704 | Msa0738840:CDS | 60.0% | |
| ! | GGTTACCACAACGGTGGTGG+TGG | - | chr5_1:56869688-56869707 | Msa0738840:CDS | 60.0% |
| GGTGGAGGTGGTTCCCACAA+TGG | - | chr5_1:56869718-56869737 | Msa0738840:CDS | 60.0% | |
| GGAGGTGGTTCCCACAATGG+TGG | - | chr5_1:56869721-56869740 | Msa0738840:CDS | 60.0% | |
| GGTGGTTCCCACAATGGTGG+TGG | - | chr5_1:56869724-56869743 | Msa0738840:CDS | 60.0% | |
| !! | GGTTCCCACAATGGTGGTGG+TGG | - | chr5_1:56869727-56869746 | Msa0738840:CDS | 60.0% |
| GGTGGAAGCGGTTCCCACAA+CGG | - | chr5_1:56869757-56869776 | Msa0738840:CDS | 60.0% | |
| GGTGGAGGACATGGTGGTCA+CGG | - | chr5_1:56869838-56869857 | Msa0738840:CDS | 60.0% | |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5_1:56869874-56869893 | Msa0738840:CDS | 60.0% |
| GGTTGTAACCACCTCCACCG+TGG | + | chr5_1:56870032-56870051 | None:intergenic | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | - | chr5_1:56870036-56870055 | Msa0738840:CDS | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5_1:56870039-56870058 | Msa0738840:CDS | 60.0% | |
| GGTTACAACCACGGTGGAGG+AGG | - | chr5_1:56870042-56870061 | Msa0738840:CDS | 60.0% | |
| AACCACGGTGGAGGAGGTCA+CGG | - | chr5_1:56870048-56870067 | Msa0738840:CDS | 60.0% | |
| TTCGGCGGCGGTGTATGCCA+GGG | + | chr5_1:56866917-56866936 | None:intergenic | 65.0% | |
| ACACCGCCGCCGAACTGCTT+TGG | - | chr5_1:56866923-56866942 | Msa0738840:CDS | 65.0% | |
| GAGCCAAAGCAGTTCGGCGG+CGG | + | chr5_1:56866929-56866948 | None:intergenic | 65.0% | |
| GGAAGCGGTTCCCACAACGG+TGG | - | chr5_1:56869760-56869779 | Msa0738840:CDS | 65.0% | |
| AGCGGTTCCCACAACGGTGG+TGG | - | chr5_1:56869763-56869782 | Msa0738840:CDS | 65.0% | |
| ! | GGTTCCCACAACGGTGGTGG+TGG | - | chr5_1:56869766-56869785 | Msa0738840:CDS | 65.0% |
| GGAGGACATGGTGGTCACGG+TGG | - | chr5_1:56869841-56869860 | Msa0738840:CDS | 65.0% | |
| GGACATGGTGGTCACGGTGG+AGG | - | chr5_1:56869844-56869863 | Msa0738840:CDS | 65.0% | |
| CATGGTGGTCACGGTGGAGG+TGG | - | chr5_1:56869847-56869866 | Msa0738840:CDS | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+TGG | - | chr5_1:56869880-56869899 | Msa0738840:CDS | 65.0% | |
| GGAGGTCACGGTGGTCATGG+CGG | - | chr5_1:56869883-56869902 | Msa0738840:CDS | 65.0% | |
| GGAGGAGGTCACGGTGGACA+TGG | - | chr5_1:56870057-56870076 | Msa0738840:CDS | 65.0% | |
| GGAGGTCACGGTGGACATGG+TGG | - | chr5_1:56870060-56870079 | Msa0738840:CDS | 65.0% | |
| GTTCGGCGGCGGTGTATGCC+AGG | + | chr5_1:56866918-56866937 | None:intergenic | 70.0% | |
| CACCGTGACCTCCTCCACCG+TGG | + | chr5_1:56870053-56870072 | None:intergenic | 70.0% | |
| CACGGTGGAGGAGGTCACGG+TGG | - | chr5_1:56870051-56870070 | Msa0738840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 56866481 | 56870122 | 56866481 | ID=Msa0738840;Name=Msa0738840 |
| chr5_1 | mRNA | 56866481 | 56870122 | 56866481 | ID=Msa0738840-mRNA-1;Parent=Msa0738840;Name=Msa0738840-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.66|1|1|3|0|376 |
| chr5_1 | exon | 56869548 | 56870122 | 56869548 | ID=Msa0738840-mRNA-1:exon:16101;Parent=Msa0738840-mRNA-1 |
| chr5_1 | exon | 56867839 | 56867873 | 56867839 | ID=Msa0738840-mRNA-1:exon:16100;Parent=Msa0738840-mRNA-1 |
| chr5_1 | exon | 56866481 | 56867001 | 56866481 | ID=Msa0738840-mRNA-1:exon:16099;Parent=Msa0738840-mRNA-1 |
| chr5_1 | CDS | 56869548 | 56870122 | 56869548 | ID=Msa0738840-mRNA-1:cds;Parent=Msa0738840-mRNA-1 |
| chr5_1 | CDS | 56867839 | 56867873 | 56867839 | ID=Msa0738840-mRNA-1:cds;Parent=Msa0738840-mRNA-1 |
| chr5_1 | CDS | 56866481 | 56867001 | 56866481 | ID=Msa0738840-mRNA-1:cds;Parent=Msa0738840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
