AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766470 MtrunA17_Chr5g0417701 97.581 248 6 0 1 248 1 248 0.0 496
Msa0766470 MtrunA17_Chr4g0042521 87.045 247 32 0 1 247 1 247 1.69e-164 454
Msa0766470 MtrunA17_Chr3g0128791 80.165 242 48 0 6 247 12 253 8.39e-147 410
Msa0766470 MtrunA17_Chr3g0128801 80.165 242 48 0 6 247 12 253 1.17e-146 409
Msa0766470 MtrunA17_Chr3g0092071 80.769 234 45 0 14 247 14 247 9.09e-146 407
Msa0766470 MtrunA17_Chr5g0432611 73.984 246 63 1 3 247 6 251 3.29e-139 390
Msa0766470 MtrunA17_Chr7g0217661 76.305 249 48 3 1 247 1 240 1.85e-136 383
Msa0766470 MtrunA17_Chr3g0107291 75.709 247 60 0 1 247 14 260 2.01e-133 376
Msa0766470 MtrunA17_Chr3g0107311 75.304 247 61 0 1 247 8 254 6.54e-133 375
Msa0766470 MtrunA17_Chr5g0435311 74.236 229 57 1 22 248 79 307 6.38e-126 359
Msa0766470 MtrunA17_Chr2g0328261 66.795 259 75 2 1 248 1 259 6.66e-126 357
Msa0766470 MtrunA17_Chr7g0238681 74.672 229 56 1 22 248 29 257 1.12e-125 357
Msa0766470 MtrunA17_Chr6g0453341 75.200 250 51 3 1 247 11 252 1.04e-122 349
Msa0766470 MtrunA17_Chr4g0031621 72.489 229 61 1 22 248 29 257 1.08e-117 337
Msa0766470 MtrunA17_Chr1g0193631 65.315 222 73 3 25 242 30 251 2.39e-105 305
Msa0766470 MtrunA17_Chr7g0271001 59.761 251 95 5 3 247 4 254 9.15e-105 303
Msa0766470 MtrunA17_Chr1g0157061 64.186 215 74 2 32 243 22 236 5.15e-103 298
Msa0766470 MtrunA17_Chr4g0069711 58.667 225 88 3 23 244 59 281 5.67e-97 285
Msa0766470 MtrunA17_Chr7g0218741 54.839 248 107 3 2 246 6 251 3.70e-95 279
Msa0766470 MtrunA17_Chr7g0218751 57.500 240 96 3 7 244 12 247 1.08e-94 278
Msa0766470 MtrunA17_Chr8g0360041 55.870 247 104 3 2 245 7 251 1.25e-92 273
Msa0766470 MtrunA17_Chr5g0433841 56.696 224 96 1 25 247 41 264 2.61e-90 267
Msa0766470 MtrunA17_Chr5g0398271 57.658 222 90 3 25 243 37 257 5.36e-89 264
Msa0766470 MtrunA17_Chr4g0021561 48.996 249 125 1 1 247 8 256 6.10e-87 258
Msa0766470 MtrunA17_Chr7g0218761 60.199 201 76 2 44 242 8 206 1.35e-85 253
Msa0766470 MtrunA17_Chr4g0057091 55.605 223 93 4 25 243 36 256 3.19e-84 252
Msa0766470 MtrunA17_Chr8g0360721 58.706 201 79 2 44 242 17 215 1.62e-82 246
Msa0766470 MtrunA17_Chr3g0109801 52.790 233 101 5 25 248 53 285 4.81e-81 244
Msa0766470 MtrunA17_Chr4g0022841 55.556 117 52 0 129 245 1 117 1.00e-41 139
Msa0766470 MtrunA17_Chr2g0324191 42.759 145 80 2 6 147 8 152 1.04e-38 132
Msa0766470 MtrunA17_Chr2g0324181 56.436 101 44 0 147 247 17 117 1.79e-36 125
Msa0766470 MtrunA17_Chr4g0022851 54.918 122 46 3 3 119 7 124 2.45e-36 125
Msa0766470 MtrunA17_Chr2g0324221 31.197 234 131 9 25 243 35 253 1.38e-25 101
Msa0766470 MtrunA17_Chr2g0324201 29.845 258 151 10 1 243 9 251 4.04e-25 99.8
Msa0766470 MtrunA17_Chr7g0231221 32.314 229 127 10 30 242 53 269 1.03e-24 99.0
Msa0766470 MtrunA17_Chr8g0359971 55.844 77 33 1 168 243 1 77 9.09e-24 91.3
Msa0766470 MtrunA17_Chr4g0021641 31.169 231 135 9 25 243 41 259 1.07e-23 96.3
Msa0766470 MtrunA17_Chr8g0359981 55.294 85 29 4 67 147 2 81 2.36e-23 91.3
Msa0766470 MtrunA17_Chr7g0231211 30.769 234 130 11 25 242 47 264 6.37e-22 91.7
Msa0766470 MtrunA17_Chr4g0012801 31.197 234 128 11 25 242 42 258 1.86e-21 90.1
Msa0766470 MtrunA17_Chr4g0055601 28.761 226 147 7 25 243 28 246 7.30e-19 82.8
Msa0766470 MtrunA17_Chr5g0399811 27.801 241 156 9 9 242 16 245 5.98e-18 80.5
Msa0766470 MtrunA17_Chr4g0055561 28.761 226 144 9 25 242 28 244 4.66e-17 78.2
Msa0766470 MtrunA17_Chr1g0193571 56.897 58 24 1 192 248 4 61 7.66e-16 70.1
Msa0766470 MtrunA17_Chr4g0038741 28.829 222 127 9 36 242 32 237 2.02e-15 73.6
Msa0766470 MtrunA17_Chr4g0055061 27.660 235 136 10 25 242 29 246 2.29e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766470 AT2G03090.1 83.065 248 42 0 1 248 6 253 3.44e-155 431
Msa0766470 AT1G69530.2 82.800 250 41 2 1 248 1 250 1.26e-152 425
Msa0766470 AT1G69530.1 82.800 250 41 2 1 248 1 250 1.26e-152 425
Msa0766470 AT1G69530.3 81.600 250 44 2 1 248 1 250 3.21e-150 420
Msa0766470 AT1G26770.1 84.337 249 38 1 1 248 1 249 6.61e-146 408
Msa0766470 AT1G26770.2 84.337 249 38 1 1 248 11 259 7.84e-146 408
Msa0766470 AT5G56320.1 76.829 246 56 1 3 248 8 252 2.23e-139 392
Msa0766470 AT5G56320.2 76.829 246 56 1 3 248 8 252 2.23e-139 392
Msa0766470 AT5G56320.3 76.829 246 56 1 3 248 8 252 1.96e-138 391
Msa0766470 AT2G40610.1 70.850 247 68 2 2 247 10 253 5.44e-133 375
Msa0766470 AT2G39700.1 75.983 229 53 1 22 248 28 256 2.70e-129 366
Msa0766470 AT1G69530.4 73.600 250 34 3 1 248 1 220 5.14e-128 362
Msa0766470 AT1G69530.5 77.729 229 47 3 1 227 1 227 3.71e-127 360
Msa0766470 AT5G02260.1 74.236 229 57 1 22 248 29 257 8.78e-127 360
Msa0766470 AT3G55500.1 67.717 254 76 2 1 248 6 259 6.19e-126 358
Msa0766470 AT5G05290.1 72.124 226 62 1 23 247 30 255 2.84e-125 356
Msa0766470 AT2G37640.1 73.362 229 59 1 22 248 33 261 3.27e-124 353
Msa0766470 AT3G29030.1 74.222 225 49 2 25 248 38 254 2.15e-121 346
Msa0766470 AT2G28950.1 67.578 256 75 2 1 248 1 256 5.85e-121 345
Msa0766470 AT1G20190.1 67.713 223 69 2 24 243 25 247 5.80e-111 320
Msa0766470 AT2G37640.2 71.292 209 58 1 42 248 28 236 3.12e-110 317
Msa0766470 AT4G01630.1 62.810 242 85 4 6 242 8 249 8.27e-107 309
Msa0766470 AT5G39280.1 55.702 228 99 1 17 244 46 271 2.13e-94 278
Msa0766470 AT5G39300.1 55.459 229 100 1 16 244 46 272 4.29e-94 278
Msa0766470 AT5G39270.1 57.273 220 92 1 25 244 58 275 2.28e-92 273
Msa0766470 AT5G39290.1 56.364 220 94 1 25 244 58 275 1.15e-91 271
Msa0766470 AT1G20190.2 64.706 187 63 2 60 243 2 188 9.94e-89 261
Msa0766470 AT1G12560.1 53.785 251 110 5 3 248 13 262 4.01e-88 262
Msa0766470 AT1G62980.1 53.061 245 108 4 1 242 10 250 3.12e-87 259
Msa0766470 AT5G39310.1 55.405 222 96 2 24 244 89 308 3.25e-87 261
Msa0766470 AT3G03220.1 53.778 225 103 1 25 248 40 264 8.50e-86 256
Msa0766470 AT3G15370.1 52.400 250 104 7 8 247 7 251 3.40e-84 251
Msa0766470 AT5G39260.1 52.212 226 100 2 20 244 40 258 1.02e-78 238
Msa0766470 AT4G38210.1 47.967 246 121 3 6 247 12 254 2.44e-78 237
Msa0766470 AT3G15370.2 46.786 280 104 8 8 247 7 281 1.57e-77 236
Msa0766470 AT4G28250.1 34.764 233 125 10 25 243 36 255 2.29e-28 108
Msa0766470 AT2G20750.1 32.189 233 134 9 25 243 40 262 1.93e-25 101
Msa0766470 AT4G28250.2 33.621 232 123 10 25 243 36 249 1.44e-24 98.6
Msa0766470 AT1G65680.1 30.864 243 141 10 15 242 37 267 3.06e-23 95.5
Msa0766470 AT1G65681.1 30.876 217 125 9 39 242 12 216 2.40e-19 84.0
Msa0766470 AT2G20750.2 31.792 173 98 6 25 186 40 203 9.86e-18 79.7
Msa0766470 AT4G17030.1 29.084 251 149 9 6 242 8 243 1.05e-17 80.1
Msa0766470 AT2G45110.1 28.814 236 129 9 28 242 36 253 2.13e-17 79.3
Msa0766470 AT4G28250.4 33.143 175 90 7 25 189 36 193 1.09e-16 76.6
Msa0766470 AT4G28250.3 33.721 172 87 7 25 186 36 190 2.65e-16 75.5
Msa0766470 AT3G60570.1 25.984 254 156 9 8 242 11 251 1.77e-15 74.3
Msa0766470 AT3G45970.2 26.415 212 134 9 43 242 14 215 1.73e-14 71.2
Msa0766470 AT3G45960.2 29.126 206 125 9 48 242 46 241 1.86e-13 68.6
Msa0766470 AT4G38400.1 26.699 206 130 8 48 242 47 242 5.10e-12 64.7
Msa0766470 AT3G45970.1 25.604 207 132 9 48 242 46 242 7.24e-12 63.9

Find 110 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGACCTTCTTGATTAT+TGG 0.171021 5_2:-28262095 Msa0766470:three_prime_UTR
GCCCCAGCTGGTTGGTCTTT+TGG 0.178373 5_2:-28262413 Msa0766470:CDS
CAAAGCAACAATTATCTTAA+TGG 0.193864 5_2:-28262497 Msa0766470:CDS
ATTAGATAGTATGCTAGTTT+TGG 0.200784 5_2:-28262237 Msa0766470:three_prime_UTR
CAAGATGGTTCATATTTAAT+TGG 0.217198 5_2:-28262112 Msa0766470:three_prime_UTR
GGATGCCAATGTCTAGAAAT+TGG 0.241916 5_2:-28262532 Msa0766470:CDS
AATGCACATGCAACTTTCTA+TGG 0.254508 5_2:-28263766 Msa0766470:CDS
TCTCATTGGGTTGTTCTTCA+TGG 0.255156 5_2:-28263839 Msa0766470:CDS
GTGTCTTCCTGGCTCTATTT+TGG 0.260571 5_2:-28263468 Msa0766470:CDS
CTTTCCATTACTTGCTTCAT+AGG 0.261264 5_2:+28261865 None:intergenic
TGGTAAGTAATTGAAATTCT+AGG 0.283000 5_2:-28262191 Msa0766470:three_prime_UTR
CTAGAAATTGGGGTCAAAAT+TGG 0.289763 5_2:-28262520 Msa0766470:CDS
TTAGGTGGTGCATGTGGATA+TGG 0.293336 5_2:-28263608 Msa0766470:intron
GTACATTCAGTAGCTATTAA+AGG 0.297161 5_2:-28262569 Msa0766470:CDS
ATTGAAACAGTTATGTTTGT+TGG 0.322478 5_2:-28261783 Msa0766470:three_prime_UTR
GCAGAAGAAGGGGAGGAATT+AGG 0.323849 5_2:-28262658 Msa0766470:CDS
GTGGTTCTTGCTTTGAGATT+AGG 0.333003 5_2:-28263511 Msa0766470:CDS
TGCTTCTTACAATACTAATA+TGG 0.334777 5_2:+28261957 None:intergenic
GGGGTTGAGGTGAGATGGGT+TGG 0.341173 5_2:-28262215 Msa0766470:three_prime_UTR
GACCGTAAATGGTGTCTTCC+TGG 0.357239 5_2:-28263479 Msa0766470:CDS
GCGGTAGTTAAAGTTGTTAC+TGG 0.363689 5_2:-28264014 None:intergenic
CGTGACATAGAACTTTGATA+TGG 0.368803 5_2:+28262354 None:intergenic
CACCATCCTCCATTGTTATT+AGG 0.369879 5_2:+28263407 None:intergenic
GCTATTAAAGGGTCAAGAAC+AGG 0.379089 5_2:-28262557 Msa0766470:CDS
TTCCATAACCTTGACTGTAT+AGG 0.380723 5_2:+28263582 None:intergenic
TGGCCAAGCTTTGTCTTTCA+AGG 0.384678 5_2:-28262477 Msa0766470:CDS
GATGCCAATGTCTAGAAATT+GGG 0.384818 5_2:-28262531 Msa0766470:CDS
AGCCAGGAAGACACCATTTA+CGG 0.387805 5_2:+28263477 None:intergenic
GAAGCTAGCAAAGAAGATTA+TGG 0.393919 5_2:-28262044 Msa0766470:three_prime_UTR
TGCTTTGAGATTAGGTGTGC+TGG 0.396638 5_2:-28263503 Msa0766470:CDS
AATTCCTCCCCTTCTTCTGC+AGG 0.397486 5_2:+28262661 None:intergenic
ACCAGCTGGGGCAGCATTGT+TGG 0.398932 5_2:+28262424 None:intergenic
AGTTGAAGAAGTTTATTGTT+TGG 0.403507 5_2:-28261756 Msa0766470:three_prime_UTR
TTATTAGGCAAGGCATTGTT+TGG 0.406087 5_2:+28263422 None:intergenic
GTATAACTCAATAGTATACT+AGG 0.407168 5_2:-28262262 Msa0766470:three_prime_UTR
GGTAAGTAATTGAAATTCTA+GGG 0.408092 5_2:-28262190 Msa0766470:three_prime_UTR
ATTTACCTTCTGTAAGAAAC+AGG 0.410554 5_2:+28263308 None:intergenic
TATGGTGTGTCTAACGGAAT+TGG 0.414245 5_2:+28262372 None:intergenic
GGTGTGCTGGTGACCGTAAA+TGG 0.417502 5_2:-28263490 Msa0766470:CDS
CTTAATTTATAGACCTTTGA+GGG 0.421096 5_2:+28263966 None:intergenic
AACCTATACAGTCAAGGTTA+TGG 0.427075 5_2:-28263584 Msa0766470:CDS
CTTATGGTTATGGTGGAGGA+TGG 0.431228 5_2:-28263792 Msa0766470:CDS
GTAACAAATGTGGGTGGTGC+TGG 0.440862 5_2:-28262596 Msa0766470:CDS
TACATTCAGTAGCTATTAAA+GGG 0.441653 5_2:-28262568 Msa0766470:CDS
TTGAGGTGAGATGGGTTGGT+TGG 0.450685 5_2:-28262211 Msa0766470:three_prime_UTR
GGAATTAGGTTCACAATCAA+TGG 0.459198 5_2:-28262644 Msa0766470:CDS
ACAATGCTGCCCCAGCTGGT+TGG 0.464148 5_2:-28262421 Msa0766470:CDS
TCCAACAATGCTGCCCCAGC+TGG 0.465999 5_2:-28262425 Msa0766470:CDS
TGAGAGTGAGGAAAGAATGA+AGG 0.473025 5_2:+28263935 None:intergenic
ACTTAATTTATAGACCTTTG+AGG 0.482988 5_2:+28263965 None:intergenic
AGAGTGAAAGTAGATACAAT+TGG 0.483155 5_2:+28263990 None:intergenic
TAACCTTGAAAGACAAAGCT+TGG 0.500681 5_2:+28262474 None:intergenic
TCTGCTTATGGTTATGGTGG+AGG 0.502421 5_2:-28263796 Msa0766470:CDS
TTGTTCCTGTTTCTTACAGA+AGG 0.505585 5_2:-28263313 Msa0766470:intron
TCCTCCATTGTTATTAGGCA+AGG 0.509324 5_2:+28263412 None:intergenic
AGTGATGCATCAGGAACAAT+GGG 0.509766 5_2:-28263739 Msa0766470:intron
ATGGTGTGTCTAACGGAATT+GGG 0.514181 5_2:+28262373 None:intergenic
GTAGGGTACCCTGCAGAAGA+AGG 0.516806 5_2:-28262670 Msa0766470:intron
TGACCCCAATTTCTAGACAT+TGG 0.519449 5_2:+28262527 None:intergenic
TATGGAGGAAGTGATGCATC+AGG 0.519711 5_2:-28263748 Msa0766470:CDS
TGACCAAAAGACCAACCAGC+TGG 0.520912 5_2:+28262410 None:intergenic
GAGTGAAAGTAGATACAATT+GGG 0.521517 5_2:+28263991 None:intergenic
TCATCTGCTTATGGTTATGG+TGG 0.521601 5_2:-28263799 Msa0766470:CDS
TTCAACAGTGGTTTGAGCTG+TGG 0.522814 5_2:-28263530 Msa0766470:CDS
TGAGGAAAGAATGAAGGGTA+AGG 0.527435 5_2:+28263941 None:intergenic
AGAATTGCTCAATACAAAGC+TGG 0.532239 5_2:-28263338 Msa0766470:CDS
TTATGGTTATGGTGGAGGAT+GGG 0.534886 5_2:-28263791 Msa0766470:CDS
TTAGGCAAGGCATTGTTTGG+TGG 0.537849 5_2:+28263425 None:intergenic
CTGAGTGATTAATAGTATGT+TGG 0.542087 5_2:-28261898 Msa0766470:three_prime_UTR
AGATCAAAGTGTTGCAAAGG+AGG 0.543969 5_2:+28263380 None:intergenic
TTCAAGGTTACAACAAGTGA+TGG 0.544265 5_2:-28262461 Msa0766470:CDS
GACCAAAAGACCAACCAGCT+GGG 0.545554 5_2:+28262411 None:intergenic
GCAGTGACCAAAATAGAGCC+AGG 0.547622 5_2:+28263461 None:intergenic
ATTCCTCCCCTTCTTCTGCA+GGG 0.548478 5_2:+28262662 None:intergenic
CTTTGATATGGTGTGTCTAA+CGG 0.551730 5_2:+28262366 None:intergenic
TACTAGAACTAAGTTGAAGT+AGG 0.551749 5_2:+28262616 None:intergenic
TAGGGTACCCTGCAGAAGAA+GGG 0.557129 5_2:-28262669 Msa0766470:CDS
AATGTGAAGTTGTGAGAGTG+AGG 0.558907 5_2:+28263923 None:intergenic
TACTTTCACTCTCCCCTCAA+AGG 0.560368 5_2:-28263979 Msa0766470:five_prime_UTR
ACGGAATTGGGCACCAGTGT+AGG 0.562519 5_2:+28262385 None:intergenic
AAGTGATGCATCAGGAACAA+TGG 0.564601 5_2:-28263740 Msa0766470:CDS
GCTTCAATCAAAATGATGAA+AGG 0.569134 5_2:+28262134 None:intergenic
ATGTCCTATGAAGCAAGTAA+TGG 0.569719 5_2:-28261869 Msa0766470:three_prime_UTR
CTTAGTTCTAGTAACAAATG+TGG 0.570683 5_2:-28262606 Msa0766470:CDS
GAGAGTGAGGAAAGAATGAA+GGG 0.583315 5_2:+28263936 None:intergenic
TTCTTACAATACTAATATGG+CGG 0.586489 5_2:+28261960 None:intergenic
GATCAAAGTGTTGCAAAGGA+GGG 0.592393 5_2:+28263381 None:intergenic
GCAAGATCAAAGTGTTGCAA+AGG 0.592711 5_2:+28263377 None:intergenic
CTAGGGGTTAGAAAATGTGA+AGG 0.595417 5_2:-28262173 Msa0766470:three_prime_UTR
TCTTACAATACTAATATGGC+GGG 0.598320 5_2:+28261961 None:intergenic
TATAACTCAATAGTATACTA+GGG 0.598944 5_2:-28262261 Msa0766470:three_prime_UTR
TTAGTTCTAGTAACAAATGT+GGG 0.599321 5_2:-28262605 Msa0766470:CDS
AATGCCTTGCCTAATAACAA+TGG 0.606510 5_2:-28263416 Msa0766470:CDS
GTAAGTAATTGAAATTCTAG+GGG 0.612591 5_2:-28262189 Msa0766470:three_prime_UTR
CTATTAAAGGGTCAAGAACA+GGG 0.615693 5_2:-28262556 Msa0766470:CDS
TAGGGGTTAGAAAATGTGAA+GGG 0.621401 5_2:-28262172 Msa0766470:three_prime_UTR
ATGCCAATGTCTAGAAATTG+GGG 0.621765 5_2:-28262530 Msa0766470:CDS
AGGGTACCCTGCAGAAGAAG+GGG 0.622412 5_2:-28262668 Msa0766470:CDS
ATAATACATCAATTAACAAG+AGG 0.624708 5_2:+28261814 None:intergenic
ACCAAAAGACCAACCAGCTG+GGG 0.625454 5_2:+28262412 None:intergenic
AGCACAGCTTTGTTCAACAG+TGG 0.628810 5_2:-28263542 Msa0766470:CDS
TGCCTAATAACAATGGAGGA+TGG 0.634087 5_2:-28263409 Msa0766470:CDS
TACAATACTAATATGGCGGG+TGG 0.634917 5_2:+28261964 None:intergenic
GCACATGCAACTTTCTATGG+AGG 0.636010 5_2:-28263763 Msa0766470:CDS
GCCTTGCCTAATAACAATGG+AGG 0.642659 5_2:-28263413 Msa0766470:CDS
TTAATTTATAGACCTTTGAG+GGG 0.643712 5_2:+28263967 None:intergenic
TATGGAAACCTATACAGTCA+AGG 0.647219 5_2:-28263590 Msa0766470:CDS
GTACCCTGCAGAAGAAGGGG+AGG 0.667861 5_2:-28262665 Msa0766470:CDS
GTTCTAGTAACAAATGTGGG+TGG 0.696895 5_2:-28262602 Msa0766470:CDS
TTAAAGGGTCAAGAACAGGG+TGG 0.777410 5_2:-28262553 Msa0766470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTATTAAAAAA+AGG - chr5_2:28262970-28262989 Msa0766470:intron 0.0%
!!! AAATATTTTTTATTAAAAAA+AGG - chr5_2:28262970-28262989 Msa0766470:intron 0.0%
!!! TTTTTTTTTTTTGTAATGAA+GGG + chr5_2:28261896-28261915 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTAATGA+AGG + chr5_2:28261897-28261916 None:intergenic 10.0%
!! TCATTACAAAAAAAAAAAAA+TGG - chr5_2:28261897-28261916 Msa0766470:three_prime_UTR 10.0%
!!! TTTAAAATTATTTATTAGAG+AGG + chr5_2:28262883-28262902 None:intergenic 10.0%
!!! ACTAATATTAATTATTGTTT+TGG + chr5_2:28262917-28262936 None:intergenic 10.0%
!!! TTTTTTTTTTTTGTAATGAA+GGG + chr5_2:28261896-28261915 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTAATGA+AGG + chr5_2:28261897-28261916 None:intergenic 10.0%
!! TCATTACAAAAAAAAAAAAA+TGG - chr5_2:28261897-28261916 Msa0766470:three_prime_UTR 10.0%
!!! TTTAAAATTATTTATTAGAG+AGG + chr5_2:28262883-28262902 None:intergenic 10.0%
!!! ACTAATATTAATTATTGTTT+TGG + chr5_2:28262917-28262936 None:intergenic 10.0%
!! TTTATACTATTTAAGCAATT+TGG - chr5_2:28262087-28262106 Msa0766470:three_prime_UTR 15.0%
!! ATTAAACATATTAGTCAAAA+GGG + chr5_2:28262119-28262138 None:intergenic 15.0%
!! TATTAAACATATTAGTCAAA+AGG + chr5_2:28262120-28262139 None:intergenic 15.0%
!!! ATATTGAATATTTTTTTAGG+TGG - chr5_2:28262137-28262156 Msa0766470:three_prime_UTR 15.0%
!!! TTTTTTTAATCACATGTATT+TGG - chr5_2:28262586-28262605 Msa0766470:CDS 15.0%
!! CTAATATAAAACAAAAAGTA+GGG + chr5_2:28262618-28262637 None:intergenic 15.0%
!! TCTAATATAAAACAAAAAGT+AGG + chr5_2:28262619-28262638 None:intergenic 15.0%
!!! ATCTTAGTATTTTACTATTT+TGG - chr5_2:28263755-28263774 Msa0766470:CDS 15.0%
!! TTTATACTATTTAAGCAATT+TGG - chr5_2:28262087-28262106 Msa0766470:three_prime_UTR 15.0%
!! ATTAAACATATTAGTCAAAA+GGG + chr5_2:28262119-28262138 None:intergenic 15.0%
!! TATTAAACATATTAGTCAAA+AGG + chr5_2:28262120-28262139 None:intergenic 15.0%
!!! ATATTGAATATTTTTTTAGG+TGG - chr5_2:28262137-28262156 Msa0766470:three_prime_UTR 15.0%
!!! TTTTTTTAATCACATGTATT+TGG - chr5_2:28262586-28262605 Msa0766470:CDS 15.0%
!! CTAATATAAAACAAAAAGTA+GGG + chr5_2:28262618-28262637 None:intergenic 15.0%
!! TCTAATATAAAACAAAAAGT+AGG + chr5_2:28262619-28262638 None:intergenic 15.0%
!!! ATCTTAGTATTTTACTATTT+TGG - chr5_2:28263755-28263774 Msa0766470:CDS 15.0%
!! TTAAACATATTAGTCAAAAG+GGG + chr5_2:28262118-28262137 None:intergenic 20.0%
!! TTGAGATTAAATTTGTGTAA+TGG - chr5_2:28262514-28262533 Msa0766470:CDS 20.0%
!! TGAGATTAAATTTGTGTAAT+GGG - chr5_2:28262515-28262534 Msa0766470:CDS 20.0%
!!! TGTATTTTTTTCTCTCTAAA+TGG - chr5_2:28262716-28262735 Msa0766470:intron 20.0%
!!! GTATTTTTTTCTCTCTAAAT+GGG - chr5_2:28262717-28262736 Msa0766470:intron 20.0%
!! AGTATAAATTACTTACAACT+TGG + chr5_2:28263027-28263046 None:intergenic 20.0%
!! TATAACTCAATAGTATACTA+GGG - chr5_2:28263499-28263518 Msa0766470:CDS 20.0%
!! ATAATACATCAATTAACAAG+AGG + chr5_2:28263949-28263968 None:intergenic 20.0%
!! TTAAACATATTAGTCAAAAG+GGG + chr5_2:28262118-28262137 None:intergenic 20.0%
!! TTGAGATTAAATTTGTGTAA+TGG - chr5_2:28262514-28262533 Msa0766470:CDS 20.0%
!! TGAGATTAAATTTGTGTAAT+GGG - chr5_2:28262515-28262534 Msa0766470:CDS 20.0%
!!! TGTATTTTTTTCTCTCTAAA+TGG - chr5_2:28262716-28262735 Msa0766470:intron 20.0%
!!! GTATTTTTTTCTCTCTAAAT+GGG - chr5_2:28262717-28262736 Msa0766470:intron 20.0%
!! AGTATAAATTACTTACAACT+TGG + chr5_2:28263027-28263046 None:intergenic 20.0%
!! TATAACTCAATAGTATACTA+GGG - chr5_2:28263499-28263518 Msa0766470:CDS 20.0%
!! ATAATACATCAATTAACAAG+AGG + chr5_2:28263949-28263968 None:intergenic 20.0%
! TTAATTTATAGACCTTTGAG+GGG + chr5_2:28261796-28261815 None:intergenic 25.0%
! CTTAATTTATAGACCTTTGA+GGG + chr5_2:28261797-28261816 None:intergenic 25.0%
! ACTTAATTTATAGACCTTTG+AGG + chr5_2:28261798-28261817 None:intergenic 25.0%
! AAAAAAAAAATGGCTCTCAT+TGG - chr5_2:28261907-28261926 Msa0766470:three_prime_UTR 25.0%
! AAAAAAAAATGGCTCTCATT+GGG - chr5_2:28261908-28261927 Msa0766470:three_prime_UTR 25.0%
!!! ATTAAATTTGTGTAATGGGT+TGG - chr5_2:28262519-28262538 Msa0766470:CDS 25.0%
! AACTTTATCTAGCTAGTTAA+TGG - chr5_2:28262667-28262686 Msa0766470:CDS 25.0%
! ACTTTATCTAGCTAGTTAAT+GGG - chr5_2:28262668-28262687 Msa0766470:CDS 25.0%
! TATTTATTAGAGAGGTGAAA+TGG + chr5_2:28262875-28262894 None:intergenic 25.0%
! AAAGGACACTTATATAGAAA+AGG - chr5_2:28262988-28263007 Msa0766470:intron 25.0%
! AGAAGTAATTTATTGTTGTG+TGG - chr5_2:28263061-28263080 Msa0766470:intron 25.0%
!!! TTAGTTCTAGTAACAAATGT+GGG - chr5_2:28263155-28263174 Msa0766470:intron 25.0%
! TACATTCAGTAGCTATTAAA+GGG - chr5_2:28263192-28263211 Msa0766470:intron 25.0%
! CAAAGCAACAATTATCTTAA+TGG - chr5_2:28263263-28263282 Msa0766470:intron 25.0%
! GTATAACTCAATAGTATACT+AGG - chr5_2:28263498-28263517 Msa0766470:CDS 25.0%
!!! ATTAGATAGTATGCTAGTTT+TGG - chr5_2:28263523-28263542 Msa0766470:CDS 25.0%
!!! TTAGATAGTATGCTAGTTTT+GGG - chr5_2:28263524-28263543 Msa0766470:CDS 25.0%
! TGGTAAGTAATTGAAATTCT+AGG - chr5_2:28263569-28263588 Msa0766470:CDS 25.0%
! GGTAAGTAATTGAAATTCTA+GGG - chr5_2:28263570-28263589 Msa0766470:CDS 25.0%
! GTAAGTAATTGAAATTCTAG+GGG - chr5_2:28263571-28263590 Msa0766470:CDS 25.0%
! CAAGATGGTTCATATTTAAT+TGG - chr5_2:28263648-28263667 Msa0766470:intron 25.0%
! AAAAACTCCAATAATCAAGA+AGG + chr5_2:28263675-28263694 None:intergenic 25.0%
!!! GTTTTTTTCTAATCTTCAGT+TGG - chr5_2:28263689-28263708 Msa0766470:intron 25.0%
!!! GTATTTTACTATTTTGGAAG+TGG - chr5_2:28263761-28263780 Msa0766470:CDS 25.0%
! TTCTTACAATACTAATATGG+CGG + chr5_2:28263803-28263822 None:intergenic 25.0%
! TGCTTCTTACAATACTAATA+TGG + chr5_2:28263806-28263825 None:intergenic 25.0%
! ATTGAAACAGTTATGTTTGT+TGG - chr5_2:28263977-28263996 Msa0766470:five_prime_UTR 25.0%
! AGTTGAAGAAGTTTATTGTT+TGG - chr5_2:28264004-28264023 Msa0766470:five_prime_UTR 25.0%
! TTAATTTATAGACCTTTGAG+GGG + chr5_2:28261796-28261815 None:intergenic 25.0%
! CTTAATTTATAGACCTTTGA+GGG + chr5_2:28261797-28261816 None:intergenic 25.0%
! ACTTAATTTATAGACCTTTG+AGG + chr5_2:28261798-28261817 None:intergenic 25.0%
! AAAAAAAAAATGGCTCTCAT+TGG - chr5_2:28261907-28261926 Msa0766470:three_prime_UTR 25.0%
! AAAAAAAAATGGCTCTCATT+GGG - chr5_2:28261908-28261927 Msa0766470:three_prime_UTR 25.0%
!!! ATTAAATTTGTGTAATGGGT+TGG - chr5_2:28262519-28262538 Msa0766470:CDS 25.0%
! AACTTTATCTAGCTAGTTAA+TGG - chr5_2:28262667-28262686 Msa0766470:CDS 25.0%
! ACTTTATCTAGCTAGTTAAT+GGG - chr5_2:28262668-28262687 Msa0766470:CDS 25.0%
! TATTTATTAGAGAGGTGAAA+TGG + chr5_2:28262875-28262894 None:intergenic 25.0%
! AAAGGACACTTATATAGAAA+AGG - chr5_2:28262988-28263007 Msa0766470:intron 25.0%
! AGAAGTAATTTATTGTTGTG+TGG - chr5_2:28263061-28263080 Msa0766470:intron 25.0%
!!! TTAGTTCTAGTAACAAATGT+GGG - chr5_2:28263155-28263174 Msa0766470:intron 25.0%
! TACATTCAGTAGCTATTAAA+GGG - chr5_2:28263192-28263211 Msa0766470:intron 25.0%
! CAAAGCAACAATTATCTTAA+TGG - chr5_2:28263263-28263282 Msa0766470:intron 25.0%
! GTATAACTCAATAGTATACT+AGG - chr5_2:28263498-28263517 Msa0766470:CDS 25.0%
!!! ATTAGATAGTATGCTAGTTT+TGG - chr5_2:28263523-28263542 Msa0766470:CDS 25.0%
!!! TTAGATAGTATGCTAGTTTT+GGG - chr5_2:28263524-28263543 Msa0766470:CDS 25.0%
! TGGTAAGTAATTGAAATTCT+AGG - chr5_2:28263569-28263588 Msa0766470:CDS 25.0%
! GGTAAGTAATTGAAATTCTA+GGG - chr5_2:28263570-28263589 Msa0766470:CDS 25.0%
! GTAAGTAATTGAAATTCTAG+GGG - chr5_2:28263571-28263590 Msa0766470:CDS 25.0%
! CAAGATGGTTCATATTTAAT+TGG - chr5_2:28263648-28263667 Msa0766470:intron 25.0%
! AAAAACTCCAATAATCAAGA+AGG + chr5_2:28263675-28263694 None:intergenic 25.0%
!!! GTTTTTTTCTAATCTTCAGT+TGG - chr5_2:28263689-28263708 Msa0766470:intron 25.0%
!!! GTATTTTACTATTTTGGAAG+TGG - chr5_2:28263761-28263780 Msa0766470:CDS 25.0%
! TTCTTACAATACTAATATGG+CGG + chr5_2:28263803-28263822 None:intergenic 25.0%
! TGCTTCTTACAATACTAATA+TGG + chr5_2:28263806-28263825 None:intergenic 25.0%
! ATTGAAACAGTTATGTTTGT+TGG - chr5_2:28263977-28263996 Msa0766470:five_prime_UTR 25.0%
! AGTTGAAGAAGTTTATTGTT+TGG - chr5_2:28264004-28264023 Msa0766470:five_prime_UTR 25.0%
GAGTGAAAGTAGATACAATT+GGG + chr5_2:28261772-28261791 None:intergenic 30.0%
AGAGTGAAAGTAGATACAAT+TGG + chr5_2:28261773-28261792 None:intergenic 30.0%
! ACTATGTTTTCATCTGCTTA+TGG - chr5_2:28261952-28261971 Msa0766470:three_prime_UTR 30.0%
! TTTTCATCTGCTTATGGTTA+TGG - chr5_2:28261958-28261977 Msa0766470:three_prime_UTR 30.0%
! TGAGCAATTCTAAGAAAAAC+AGG + chr5_2:28262413-28262432 None:intergenic 30.0%
ATTTACCTTCTGTAAGAAAC+AGG + chr5_2:28262455-28262474 None:intergenic 30.0%
!! TGTCACTTTCAACTTGTAAA+TGG - chr5_2:28262549-28262568 Msa0766470:CDS 30.0%
CTTTATCTAGCTAGTTAATG+GGG - chr5_2:28262669-28262688 Msa0766470:CDS 30.0%
!! GTGAAGGGTACTATATAAAA+AGG + chr5_2:28262841-28262860 None:intergenic 30.0%
ATGGTACAATTATCAGTGAA+GGG + chr5_2:28262856-28262875 None:intergenic 30.0%
AATGGTACAATTATCAGTGA+AGG + chr5_2:28262857-28262876 None:intergenic 30.0%
! TACTAGAACTAAGTTGAAGT+AGG + chr5_2:28263147-28263166 None:intergenic 30.0%
!! CTTAGTTCTAGTAACAAATG+TGG - chr5_2:28263154-28263173 Msa0766470:intron 30.0%
GTACATTCAGTAGCTATTAA+AGG - chr5_2:28263191-28263210 Msa0766470:intron 30.0%
!!! TAGATAGTATGCTAGTTTTG+GGG - chr5_2:28263525-28263544 Msa0766470:CDS 30.0%
GCTTCAATCAAAATGATGAA+AGG + chr5_2:28263629-28263648 None:intergenic 30.0%
!!! TCATTTTGATTGAAGCAAGA+TGG - chr5_2:28263633-28263652 Msa0766470:intron 30.0%
AATTGGACCTTCTTGATTAT+TGG - chr5_2:28263665-28263684 Msa0766470:intron 30.0%
!! TTTTACTATTTTGGAAGTGG+TGG - chr5_2:28263764-28263783 Msa0766470:CDS 30.0%
TCTTACAATACTAATATGGC+GGG + chr5_2:28263802-28263821 None:intergenic 30.0%
CTGAGTGATTAATAGTATGT+TGG - chr5_2:28263862-28263881 Msa0766470:exon 30.0%
GAGTGAAAGTAGATACAATT+GGG + chr5_2:28261772-28261791 None:intergenic 30.0%
AGAGTGAAAGTAGATACAAT+TGG + chr5_2:28261773-28261792 None:intergenic 30.0%
! ACTATGTTTTCATCTGCTTA+TGG - chr5_2:28261952-28261971 Msa0766470:three_prime_UTR 30.0%
! TTTTCATCTGCTTATGGTTA+TGG - chr5_2:28261958-28261977 Msa0766470:three_prime_UTR 30.0%
! TGAGCAATTCTAAGAAAAAC+AGG + chr5_2:28262413-28262432 None:intergenic 30.0%
ATTTACCTTCTGTAAGAAAC+AGG + chr5_2:28262455-28262474 None:intergenic 30.0%
!! TGTCACTTTCAACTTGTAAA+TGG - chr5_2:28262549-28262568 Msa0766470:CDS 30.0%
CTTTATCTAGCTAGTTAATG+GGG - chr5_2:28262669-28262688 Msa0766470:CDS 30.0%
!! GTGAAGGGTACTATATAAAA+AGG + chr5_2:28262841-28262860 None:intergenic 30.0%
ATGGTACAATTATCAGTGAA+GGG + chr5_2:28262856-28262875 None:intergenic 30.0%
AATGGTACAATTATCAGTGA+AGG + chr5_2:28262857-28262876 None:intergenic 30.0%
! TACTAGAACTAAGTTGAAGT+AGG + chr5_2:28263147-28263166 None:intergenic 30.0%
!! CTTAGTTCTAGTAACAAATG+TGG - chr5_2:28263154-28263173 Msa0766470:intron 30.0%
GTACATTCAGTAGCTATTAA+AGG - chr5_2:28263191-28263210 Msa0766470:intron 30.0%
!!! TAGATAGTATGCTAGTTTTG+GGG - chr5_2:28263525-28263544 Msa0766470:CDS 30.0%
GCTTCAATCAAAATGATGAA+AGG + chr5_2:28263629-28263648 None:intergenic 30.0%
!!! TCATTTTGATTGAAGCAAGA+TGG - chr5_2:28263633-28263652 Msa0766470:intron 30.0%
AATTGGACCTTCTTGATTAT+TGG - chr5_2:28263665-28263684 Msa0766470:intron 30.0%
!! TTTTACTATTTTGGAAGTGG+TGG - chr5_2:28263764-28263783 Msa0766470:CDS 30.0%
TCTTACAATACTAATATGGC+GGG + chr5_2:28263802-28263821 None:intergenic 30.0%
CTGAGTGATTAATAGTATGT+TGG - chr5_2:28263862-28263881 Msa0766470:exon 30.0%
AATGCACATGCAACTTTCTA+TGG - chr5_2:28261994-28262013 Msa0766470:three_prime_UTR 35.0%
ACATATTAGTCAAAAGGGGT+TGG + chr5_2:28262114-28262133 None:intergenic 35.0%
!!! ATTTTTTTAGGTGGTGCATG+TGG - chr5_2:28262146-28262165 Msa0766470:three_prime_UTR 35.0%
TATGGAAACCTATACAGTCA+AGG - chr5_2:28262170-28262189 Msa0766470:three_prime_UTR 35.0%
AACCTATACAGTCAAGGTTA+TGG - chr5_2:28262176-28262195 Msa0766470:three_prime_UTR 35.0%
TTCCATAACCTTGACTGTAT+AGG + chr5_2:28262181-28262200 None:intergenic 35.0%
!! TTATTAGGCAAGGCATTGTT+TGG + chr5_2:28262341-28262360 None:intergenic 35.0%
AATGCCTTGCCTAATAACAA+TGG - chr5_2:28262344-28262363 Msa0766470:three_prime_UTR 35.0%
AGAATTGCTCAATACAAAGC+TGG - chr5_2:28262422-28262441 Msa0766470:CDS 35.0%
! TTGTTCCTGTTTCTTACAGA+AGG - chr5_2:28262447-28262466 Msa0766470:CDS 35.0%
! ACAAGTTGAAAGTGACATGA+AGG + chr5_2:28262546-28262565 None:intergenic 35.0%
ATTGTTGTGTGGATTTGTGT+AGG - chr5_2:28263072-28263091 Msa0766470:intron 35.0%
TTGTTGTGTGGATTTGTGTA+GGG - chr5_2:28263073-28263092 Msa0766470:intron 35.0%
GGAATTAGGTTCACAATCAA+TGG - chr5_2:28263116-28263135 Msa0766470:intron 35.0%
CTATTAAAGGGTCAAGAACA+GGG - chr5_2:28263204-28263223 Msa0766470:intron 35.0%
GATGCCAATGTCTAGAAATT+GGG - chr5_2:28263229-28263248 Msa0766470:intron 35.0%
ATGCCAATGTCTAGAAATTG+GGG - chr5_2:28263230-28263249 Msa0766470:intron 35.0%
CTAGAAATTGGGGTCAAAAT+TGG - chr5_2:28263240-28263259 Msa0766470:intron 35.0%
TAACCTTGAAAGACAAAGCT+TGG + chr5_2:28263289-28263308 None:intergenic 35.0%
TTCAAGGTTACAACAAGTGA+TGG - chr5_2:28263299-28263318 Msa0766470:intron 35.0%
CTTTGATATGGTGTGTCTAA+CGG + chr5_2:28263397-28263416 None:intergenic 35.0%
CGTGACATAGAACTTTGATA+TGG + chr5_2:28263409-28263428 None:intergenic 35.0%
!!! AGATAGTATGCTAGTTTTGG+GGG - chr5_2:28263526-28263545 Msa0766470:CDS 35.0%
TAGGGGTTAGAAAATGTGAA+GGG - chr5_2:28263588-28263607 Msa0766470:CDS 35.0%
!!! GTGAAGGGCTTTTTTTGAAT+TGG - chr5_2:28263603-28263622 Msa0766470:CDS 35.0%
GAAGCTAGCAAAGAAGATTA+TGG - chr5_2:28263716-28263735 Msa0766470:intron 35.0%
ATGTCCTATGAAGCAAGTAA+TGG - chr5_2:28263891-28263910 Msa0766470:five_prime_UTR 35.0%
CTTTCCATTACTTGCTTCAT+AGG + chr5_2:28263898-28263917 None:intergenic 35.0%
AATGCACATGCAACTTTCTA+TGG - chr5_2:28261994-28262013 Msa0766470:three_prime_UTR 35.0%
ACATATTAGTCAAAAGGGGT+TGG + chr5_2:28262114-28262133 None:intergenic 35.0%
!!! ATTTTTTTAGGTGGTGCATG+TGG - chr5_2:28262146-28262165 Msa0766470:three_prime_UTR 35.0%
TATGGAAACCTATACAGTCA+AGG - chr5_2:28262170-28262189 Msa0766470:three_prime_UTR 35.0%
AACCTATACAGTCAAGGTTA+TGG - chr5_2:28262176-28262195 Msa0766470:three_prime_UTR 35.0%
TTCCATAACCTTGACTGTAT+AGG + chr5_2:28262181-28262200 None:intergenic 35.0%
!! TTATTAGGCAAGGCATTGTT+TGG + chr5_2:28262341-28262360 None:intergenic 35.0%
AATGCCTTGCCTAATAACAA+TGG - chr5_2:28262344-28262363 Msa0766470:three_prime_UTR 35.0%
AGAATTGCTCAATACAAAGC+TGG - chr5_2:28262422-28262441 Msa0766470:CDS 35.0%
! TTGTTCCTGTTTCTTACAGA+AGG - chr5_2:28262447-28262466 Msa0766470:CDS 35.0%
! ACAAGTTGAAAGTGACATGA+AGG + chr5_2:28262546-28262565 None:intergenic 35.0%
ATTGTTGTGTGGATTTGTGT+AGG - chr5_2:28263072-28263091 Msa0766470:intron 35.0%
TTGTTGTGTGGATTTGTGTA+GGG - chr5_2:28263073-28263092 Msa0766470:intron 35.0%
GGAATTAGGTTCACAATCAA+TGG - chr5_2:28263116-28263135 Msa0766470:intron 35.0%
CTATTAAAGGGTCAAGAACA+GGG - chr5_2:28263204-28263223 Msa0766470:intron 35.0%
GATGCCAATGTCTAGAAATT+GGG - chr5_2:28263229-28263248 Msa0766470:intron 35.0%
ATGCCAATGTCTAGAAATTG+GGG - chr5_2:28263230-28263249 Msa0766470:intron 35.0%
CTAGAAATTGGGGTCAAAAT+TGG - chr5_2:28263240-28263259 Msa0766470:intron 35.0%
TAACCTTGAAAGACAAAGCT+TGG + chr5_2:28263289-28263308 None:intergenic 35.0%
TTCAAGGTTACAACAAGTGA+TGG - chr5_2:28263299-28263318 Msa0766470:intron 35.0%
CTTTGATATGGTGTGTCTAA+CGG + chr5_2:28263397-28263416 None:intergenic 35.0%
CGTGACATAGAACTTTGATA+TGG + chr5_2:28263409-28263428 None:intergenic 35.0%
!!! AGATAGTATGCTAGTTTTGG+GGG - chr5_2:28263526-28263545 Msa0766470:CDS 35.0%
TAGGGGTTAGAAAATGTGAA+GGG - chr5_2:28263588-28263607 Msa0766470:CDS 35.0%
!!! GTGAAGGGCTTTTTTTGAAT+TGG - chr5_2:28263603-28263622 Msa0766470:CDS 35.0%
GAAGCTAGCAAAGAAGATTA+TGG - chr5_2:28263716-28263735 Msa0766470:intron 35.0%
ATGTCCTATGAAGCAAGTAA+TGG - chr5_2:28263891-28263910 Msa0766470:five_prime_UTR 35.0%
CTTTCCATTACTTGCTTCAT+AGG + chr5_2:28263898-28263917 None:intergenic 35.0%
TGAGGAAAGAATGAAGGGTA+AGG + chr5_2:28261822-28261841 None:intergenic 40.0%
GAGAGTGAGGAAAGAATGAA+GGG + chr5_2:28261827-28261846 None:intergenic 40.0%
TGAGAGTGAGGAAAGAATGA+AGG + chr5_2:28261828-28261847 None:intergenic 40.0%
AATGTGAAGTTGTGAGAGTG+AGG + chr5_2:28261840-28261859 None:intergenic 40.0%
! TCTCATTGGGTTGTTCTTCA+TGG - chr5_2:28261921-28261940 Msa0766470:three_prime_UTR 40.0%
TCATCTGCTTATGGTTATGG+TGG - chr5_2:28261961-28261980 Msa0766470:three_prime_UTR 40.0%
! TTATGGTTATGGTGGAGGAT+GGG - chr5_2:28261969-28261988 Msa0766470:three_prime_UTR 40.0%
AAGTGATGCATCAGGAACAA+TGG - chr5_2:28262020-28262039 Msa0766470:three_prime_UTR 40.0%
AGTGATGCATCAGGAACAAT+GGG - chr5_2:28262021-28262040 Msa0766470:three_prime_UTR 40.0%
!! GTGGTTCTTGCTTTGAGATT+AGG - chr5_2:28262249-28262268 Msa0766470:three_prime_UTR 40.0%
! TCCTCCATTGTTATTAGGCA+AGG + chr5_2:28262351-28262370 None:intergenic 40.0%
TGCCTAATAACAATGGAGGA+TGG - chr5_2:28262351-28262370 Msa0766470:three_prime_UTR 40.0%
! CACCATCCTCCATTGTTATT+AGG + chr5_2:28262356-28262375 None:intergenic 40.0%
!! GATCAAAGTGTTGCAAAGGA+GGG + chr5_2:28262382-28262401 None:intergenic 40.0%
!! AGATCAAAGTGTTGCAAAGG+AGG + chr5_2:28262383-28262402 None:intergenic 40.0%
!! GCAAGATCAAAGTGTTGCAA+AGG + chr5_2:28262386-28262405 None:intergenic 40.0%
ATCTAGCTAGTTAATGGGGT+TGG - chr5_2:28262673-28262692 Msa0766470:intron 40.0%
GTTCTAGTAACAAATGTGGG+TGG - chr5_2:28263158-28263177 Msa0766470:intron 40.0%
GCTATTAAAGGGTCAAGAAC+AGG - chr5_2:28263203-28263222 Msa0766470:intron 40.0%
GGATGCCAATGTCTAGAAAT+TGG - chr5_2:28263228-28263247 Msa0766470:intron 40.0%
! TGACCCCAATTTCTAGACAT+TGG + chr5_2:28263236-28263255 None:intergenic 40.0%
ATGGTGTGTCTAACGGAATT+GGG + chr5_2:28263390-28263409 None:intergenic 40.0%
TATGGTGTGTCTAACGGAAT+TGG + chr5_2:28263391-28263410 None:intergenic 40.0%
CTAGGGGTTAGAAAATGTGA+AGG - chr5_2:28263587-28263606 Msa0766470:CDS 40.0%
! TACAATACTAATATGGCGGG+TGG + chr5_2:28263799-28263818 None:intergenic 40.0%
TGAGGAAAGAATGAAGGGTA+AGG + chr5_2:28261822-28261841 None:intergenic 40.0%
GAGAGTGAGGAAAGAATGAA+GGG + chr5_2:28261827-28261846 None:intergenic 40.0%
TGAGAGTGAGGAAAGAATGA+AGG + chr5_2:28261828-28261847 None:intergenic 40.0%
AATGTGAAGTTGTGAGAGTG+AGG + chr5_2:28261840-28261859 None:intergenic 40.0%
! TCTCATTGGGTTGTTCTTCA+TGG - chr5_2:28261921-28261940 Msa0766470:three_prime_UTR 40.0%
TCATCTGCTTATGGTTATGG+TGG - chr5_2:28261961-28261980 Msa0766470:three_prime_UTR 40.0%
! TTATGGTTATGGTGGAGGAT+GGG - chr5_2:28261969-28261988 Msa0766470:three_prime_UTR 40.0%
AAGTGATGCATCAGGAACAA+TGG - chr5_2:28262020-28262039 Msa0766470:three_prime_UTR 40.0%
AGTGATGCATCAGGAACAAT+GGG - chr5_2:28262021-28262040 Msa0766470:three_prime_UTR 40.0%
!! GTGGTTCTTGCTTTGAGATT+AGG - chr5_2:28262249-28262268 Msa0766470:three_prime_UTR 40.0%
! TCCTCCATTGTTATTAGGCA+AGG + chr5_2:28262351-28262370 None:intergenic 40.0%
TGCCTAATAACAATGGAGGA+TGG - chr5_2:28262351-28262370 Msa0766470:three_prime_UTR 40.0%
! CACCATCCTCCATTGTTATT+AGG + chr5_2:28262356-28262375 None:intergenic 40.0%
!! GATCAAAGTGTTGCAAAGGA+GGG + chr5_2:28262382-28262401 None:intergenic 40.0%
!! AGATCAAAGTGTTGCAAAGG+AGG + chr5_2:28262383-28262402 None:intergenic 40.0%
!! GCAAGATCAAAGTGTTGCAA+AGG + chr5_2:28262386-28262405 None:intergenic 40.0%
ATCTAGCTAGTTAATGGGGT+TGG - chr5_2:28262673-28262692 Msa0766470:intron 40.0%
GTTCTAGTAACAAATGTGGG+TGG - chr5_2:28263158-28263177 Msa0766470:intron 40.0%
GCTATTAAAGGGTCAAGAAC+AGG - chr5_2:28263203-28263222 Msa0766470:intron 40.0%
GGATGCCAATGTCTAGAAAT+TGG - chr5_2:28263228-28263247 Msa0766470:intron 40.0%
! TGACCCCAATTTCTAGACAT+TGG + chr5_2:28263236-28263255 None:intergenic 40.0%
ATGGTGTGTCTAACGGAATT+GGG + chr5_2:28263390-28263409 None:intergenic 40.0%
TATGGTGTGTCTAACGGAAT+TGG + chr5_2:28263391-28263410 None:intergenic 40.0%
CTAGGGGTTAGAAAATGTGA+AGG - chr5_2:28263587-28263606 Msa0766470:CDS 40.0%
! TACAATACTAATATGGCGGG+TGG + chr5_2:28263799-28263818 None:intergenic 40.0%
TACTTTCACTCTCCCCTCAA+AGG - chr5_2:28261781-28261800 Msa0766470:three_prime_UTR 45.0%
TCTGCTTATGGTTATGGTGG+AGG - chr5_2:28261964-28261983 Msa0766470:three_prime_UTR 45.0%
! CTTATGGTTATGGTGGAGGA+TGG - chr5_2:28261968-28261987 Msa0766470:three_prime_UTR 45.0%
GCACATGCAACTTTCTATGG+AGG - chr5_2:28261997-28262016 Msa0766470:three_prime_UTR 45.0%
TATGGAGGAAGTGATGCATC+AGG - chr5_2:28262012-28262031 Msa0766470:three_prime_UTR 45.0%
TTAGGTGGTGCATGTGGATA+TGG - chr5_2:28262152-28262171 Msa0766470:three_prime_UTR 45.0%
!! AGCACAGCTTTGTTCAACAG+TGG - chr5_2:28262218-28262237 Msa0766470:three_prime_UTR 45.0%
TTCAACAGTGGTTTGAGCTG+TGG - chr5_2:28262230-28262249 Msa0766470:three_prime_UTR 45.0%
!! TGCTTTGAGATTAGGTGTGC+TGG - chr5_2:28262257-28262276 Msa0766470:three_prime_UTR 45.0%
AGCCAGGAAGACACCATTTA+CGG + chr5_2:28262286-28262305 None:intergenic 45.0%
!!! GTGTCTTCCTGGCTCTATTT+TGG - chr5_2:28262292-28262311 Msa0766470:three_prime_UTR 45.0%
!! TTAGGCAAGGCATTGTTTGG+TGG + chr5_2:28262338-28262357 None:intergenic 45.0%
GCCTTGCCTAATAACAATGG+AGG - chr5_2:28262347-28262366 Msa0766470:three_prime_UTR 45.0%
TTAAAGGGTCAAGAACAGGG+TGG - chr5_2:28263207-28263226 Msa0766470:intron 45.0%
! TGGCCAAGCTTTGTCTTTCA+AGG - chr5_2:28263283-28263302 Msa0766470:intron 45.0%
! TCTTTTGGTCAGACCTACAC+TGG - chr5_2:28263362-28263381 Msa0766470:CDS 45.0%
!!! TATGCTAGTTTTGGGGGTTG+AGG - chr5_2:28263532-28263551 Msa0766470:CDS 45.0%
TACTTTCACTCTCCCCTCAA+AGG - chr5_2:28261781-28261800 Msa0766470:three_prime_UTR 45.0%
TCTGCTTATGGTTATGGTGG+AGG - chr5_2:28261964-28261983 Msa0766470:three_prime_UTR 45.0%
! CTTATGGTTATGGTGGAGGA+TGG - chr5_2:28261968-28261987 Msa0766470:three_prime_UTR 45.0%
GCACATGCAACTTTCTATGG+AGG - chr5_2:28261997-28262016 Msa0766470:three_prime_UTR 45.0%
TATGGAGGAAGTGATGCATC+AGG - chr5_2:28262012-28262031 Msa0766470:three_prime_UTR 45.0%
TTAGGTGGTGCATGTGGATA+TGG - chr5_2:28262152-28262171 Msa0766470:three_prime_UTR 45.0%
!! AGCACAGCTTTGTTCAACAG+TGG - chr5_2:28262218-28262237 Msa0766470:three_prime_UTR 45.0%
TTCAACAGTGGTTTGAGCTG+TGG - chr5_2:28262230-28262249 Msa0766470:three_prime_UTR 45.0%
!! TGCTTTGAGATTAGGTGTGC+TGG - chr5_2:28262257-28262276 Msa0766470:three_prime_UTR 45.0%
AGCCAGGAAGACACCATTTA+CGG + chr5_2:28262286-28262305 None:intergenic 45.0%
!!! GTGTCTTCCTGGCTCTATTT+TGG - chr5_2:28262292-28262311 Msa0766470:three_prime_UTR 45.0%
!! TTAGGCAAGGCATTGTTTGG+TGG + chr5_2:28262338-28262357 None:intergenic 45.0%
GCCTTGCCTAATAACAATGG+AGG - chr5_2:28262347-28262366 Msa0766470:three_prime_UTR 45.0%
TTAAAGGGTCAAGAACAGGG+TGG - chr5_2:28263207-28263226 Msa0766470:intron 45.0%
! TGGCCAAGCTTTGTCTTTCA+AGG - chr5_2:28263283-28263302 Msa0766470:intron 45.0%
! TCTTTTGGTCAGACCTACAC+TGG - chr5_2:28263362-28263381 Msa0766470:CDS 45.0%
!!! TATGCTAGTTTTGGGGGTTG+AGG - chr5_2:28263532-28263551 Msa0766470:CDS 45.0%
!!! TTAATATTGAATATTTTTTT+AGG - chr5_2:28262134-28262153 Msa0766470:three_prime_UTR 5.0%
!!! TTAATATTGAATATTTTTTT+AGG - chr5_2:28262134-28262153 Msa0766470:three_prime_UTR 5.0%
GACCGTAAATGGTGTCTTCC+TGG - chr5_2:28262281-28262300 Msa0766470:three_prime_UTR 50.0%
GCAGTGACCAAAATAGAGCC+AGG + chr5_2:28262302-28262321 None:intergenic 50.0%
! TAGGGTACCCTGCAGAAGAA+GGG - chr5_2:28263091-28263110 Msa0766470:intron 50.0%
ATTCCTCCCCTTCTTCTGCA+GGG + chr5_2:28263101-28263120 None:intergenic 50.0%
AATTCCTCCCCTTCTTCTGC+AGG + chr5_2:28263102-28263121 None:intergenic 50.0%
GCAGAAGAAGGGGAGGAATT+AGG - chr5_2:28263102-28263121 Msa0766470:intron 50.0%
GTAACAAATGTGGGTGGTGC+TGG - chr5_2:28263164-28263183 Msa0766470:intron 50.0%
ACCAAAAGACCAACCAGCTG+GGG + chr5_2:28263351-28263370 None:intergenic 50.0%
GACCAAAAGACCAACCAGCT+GGG + chr5_2:28263352-28263371 None:intergenic 50.0%
TGACCAAAAGACCAACCAGC+TGG + chr5_2:28263353-28263372 None:intergenic 50.0%
!! TTTTGGGGGTTGAGGTGAGA+TGG - chr5_2:28263540-28263559 Msa0766470:CDS 50.0%
TTTGGGGGTTGAGGTGAGAT+GGG - chr5_2:28263541-28263560 Msa0766470:CDS 50.0%
!! TTGAGGTGAGATGGGTTGGT+TGG - chr5_2:28263549-28263568 Msa0766470:CDS 50.0%
GACCGTAAATGGTGTCTTCC+TGG - chr5_2:28262281-28262300 Msa0766470:three_prime_UTR 50.0%
GCAGTGACCAAAATAGAGCC+AGG + chr5_2:28262302-28262321 None:intergenic 50.0%
! TAGGGTACCCTGCAGAAGAA+GGG - chr5_2:28263091-28263110 Msa0766470:intron 50.0%
ATTCCTCCCCTTCTTCTGCA+GGG + chr5_2:28263101-28263120 None:intergenic 50.0%
AATTCCTCCCCTTCTTCTGC+AGG + chr5_2:28263102-28263121 None:intergenic 50.0%
GCAGAAGAAGGGGAGGAATT+AGG - chr5_2:28263102-28263121 Msa0766470:intron 50.0%
GTAACAAATGTGGGTGGTGC+TGG - chr5_2:28263164-28263183 Msa0766470:intron 50.0%
ACCAAAAGACCAACCAGCTG+GGG + chr5_2:28263351-28263370 None:intergenic 50.0%
GACCAAAAGACCAACCAGCT+GGG + chr5_2:28263352-28263371 None:intergenic 50.0%
TGACCAAAAGACCAACCAGC+TGG + chr5_2:28263353-28263372 None:intergenic 50.0%
!! TTTTGGGGGTTGAGGTGAGA+TGG - chr5_2:28263540-28263559 Msa0766470:CDS 50.0%
TTTGGGGGTTGAGGTGAGAT+GGG - chr5_2:28263541-28263560 Msa0766470:CDS 50.0%
!! TTGAGGTGAGATGGGTTGGT+TGG - chr5_2:28263549-28263568 Msa0766470:CDS 50.0%
! GGTGTGCTGGTGACCGTAAA+TGG - chr5_2:28262270-28262289 Msa0766470:three_prime_UTR 55.0%
! GTAGGGTACCCTGCAGAAGA+AGG - chr5_2:28263090-28263109 Msa0766470:intron 55.0%
! AGGGTACCCTGCAGAAGAAG+GGG - chr5_2:28263092-28263111 Msa0766470:intron 55.0%
ACGGAATTGGGCACCAGTGT+AGG + chr5_2:28263378-28263397 None:intergenic 55.0%
! GGTGTGCTGGTGACCGTAAA+TGG - chr5_2:28262270-28262289 Msa0766470:three_prime_UTR 55.0%
! GTAGGGTACCCTGCAGAAGA+AGG - chr5_2:28263090-28263109 Msa0766470:intron 55.0%
! AGGGTACCCTGCAGAAGAAG+GGG - chr5_2:28263092-28263111 Msa0766470:intron 55.0%
ACGGAATTGGGCACCAGTGT+AGG + chr5_2:28263378-28263397 None:intergenic 55.0%
GTACCCTGCAGAAGAAGGGG+AGG - chr5_2:28263095-28263114 Msa0766470:intron 60.0%
TCCAACAATGCTGCCCCAGC+TGG - chr5_2:28263335-28263354 Msa0766470:CDS 60.0%
ACCAGCTGGGGCAGCATTGT+TGG + chr5_2:28263339-28263358 None:intergenic 60.0%
ACAATGCTGCCCCAGCTGGT+TGG - chr5_2:28263339-28263358 Msa0766470:CDS 60.0%
!!! GCCCCAGCTGGTTGGTCTTT+TGG - chr5_2:28263347-28263366 Msa0766470:CDS 60.0%
GGGGTTGAGGTGAGATGGGT+TGG - chr5_2:28263545-28263564 Msa0766470:CDS 60.0%
GTACCCTGCAGAAGAAGGGG+AGG - chr5_2:28263095-28263114 Msa0766470:intron 60.0%
TCCAACAATGCTGCCCCAGC+TGG - chr5_2:28263335-28263354 Msa0766470:CDS 60.0%
ACCAGCTGGGGCAGCATTGT+TGG + chr5_2:28263339-28263358 None:intergenic 60.0%
ACAATGCTGCCCCAGCTGGT+TGG - chr5_2:28263339-28263358 Msa0766470:CDS 60.0%
!!! GCCCCAGCTGGTTGGTCTTT+TGG - chr5_2:28263347-28263366 Msa0766470:CDS 60.0%
GGGGTTGAGGTGAGATGGGT+TGG - chr5_2:28263545-28263564 Msa0766470:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 28261752 28264030 28261752 ID=Msa0766470;Name=Msa0766470
chr5_2 mRNA 28261752 28264030 28261752 ID=Msa0766470-mRNA-1;Parent=Msa0766470;Name=Msa0766470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=164|1|1|1|1|1|3|630|248
chr5_2 exon 28261752 28262688 28261752 ID=Msa0766470-mRNA-1:exon:10926;Parent=Msa0766470-mRNA-1
chr5_2 exon 28263314 28263626 28263314 ID=Msa0766470-mRNA-1:exon:10925;Parent=Msa0766470-mRNA-1
chr5_2 exon 28263740 28264030 28263740 ID=Msa0766470-mRNA-1:exon:10924;Parent=Msa0766470-mRNA-1
chr5_2 five_prime_UTR 28263867 28264030 28263867 ID=Msa0766470-mRNA-1:five_prime_utr;Parent=Msa0766470-mRNA-1
chr5_2 CDS 28263740 28263866 28263740 ID=Msa0766470-mRNA-1:cds;Parent=Msa0766470-mRNA-1
chr5_2 CDS 28263314 28263626 28263314 ID=Msa0766470-mRNA-1:cds;Parent=Msa0766470-mRNA-1
chr5_2 CDS 28262382 28262688 28262382 ID=Msa0766470-mRNA-1:cds;Parent=Msa0766470-mRNA-1
chr5_2 three_prime_UTR 28261752 28262381 28261752 ID=Msa0766470-mRNA-1:three_prime_utr;Parent=Msa0766470-mRNA-1
Gene Sequence

>Msa0766470

ATGGCTCTCATTGGGTTGTTCTTCATGGTGTTTCTCACTATGTTTTCATCTGCTTATGGTTATGGTGGAGGATGGGTTAATGCACATGCAACTTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTGGTGCATGTGGATATGGAAACCTATACAGTCAAGGTTATGGAACAAACACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTGAGCTGTGGTTCTTGCTTTGAGATTAGGTGTGCTGGTGACCGTAAATGGTGTCTTCCTGGCTCTATTTTGGTCACTGCTACTAATTTCTGTCCACCAAACAATGCCTTGCCTAATAACAATGGAGGATGGTGTAACCCTCCTTTGCAACACTTTGATCTTGCTCAACCTGTTTTTCTTAGAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAACTTAGTTCTAGTAACAAATGTGGGTGGTGCTGGAGATGTACATTCAGTAGCTATTAAAGGGTCAAGAACAGGGTGGATGCCAATGTCTAGAAATTGGGGTCAAAATTGGCAAAGCAACAATTATCTTAATGGCCAAGCTTTGTCTTTCAAGGTTACAACAAGTGATGGCAAAACAGTCATTTCCAACAATGCTGCCCCAGCTGGTTGGTCTTTTGGTCAGACCTACACTGGTGCCCAATTCCGTTAG

Protein sequence

>Msa0766470

MALIGLFFMVFLTMFSSAYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNAAPAGWSFGQTYTGAQFR*