Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819340 | Q07202.1 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 3.47e-120 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819340 | sp|Q07202|CORA_MEDSA | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 4.34e-123 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819340 | Q9ZRI2 | 98.990 | 99 | 1 | 0 | 91 | 189 | 1 | 99 | 3.80e-44 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0819340 | 0.815116 | 1.090313e-51 | -8.615850e-47 |
| Msa0008850 | Msa0819340 | 0.804804 | 1.812083e-49 | -8.615850e-47 |
| Msa0017120 | Msa0819340 | 0.816180 | 6.314488e-52 | -8.615850e-47 |
| Msa0050730 | Msa0819340 | 0.802156 | 6.413079e-49 | -8.615850e-47 |
| Msa0065390 | Msa0819340 | 0.812323 | 4.491807e-51 | -8.615850e-47 |
| Msa0079250 | Msa0819340 | 0.810033 | 1.409491e-50 | -8.615850e-47 |
| Msa0086090 | Msa0819340 | 0.809314 | 2.011287e-50 | -8.615850e-47 |
| Msa0110710 | Msa0819340 | 0.815570 | 8.639500e-52 | -8.615850e-47 |
| Msa0614230 | Msa0819340 | 0.830009 | 3.738609e-55 | -8.615850e-47 |
| Msa0622340 | Msa0819340 | 0.806704 | 7.229737e-50 | -8.615850e-47 |
| Msa0638710 | Msa0819340 | 0.811351 | 7.312256e-51 | -8.615850e-47 |
| Msa0654060 | Msa0819340 | 0.805494 | 1.299223e-49 | -8.615850e-47 |
| Msa0665910 | Msa0819340 | -0.803832 | 2.888250e-49 | -8.615850e-47 |
| Msa0669200 | Msa0819340 | 0.807377 | 5.206908e-50 | -8.615850e-47 |
| Msa0670980 | Msa0819340 | 0.816463 | 5.458751e-52 | -8.615850e-47 |
| Msa0681890 | Msa0819340 | 0.800304 | 1.534502e-48 | -8.615850e-47 |
| Msa0687000 | Msa0819340 | 0.811656 | 6.276564e-51 | -8.615850e-47 |
| Msa0720270 | Msa0819340 | 0.800376 | 1.483847e-48 | -8.615850e-47 |
| Msa0725920 | Msa0819340 | 0.806250 | 9.012698e-50 | -8.615850e-47 |
| Msa0738840 | Msa0819340 | 0.830048 | 3.657841e-55 | -8.615850e-47 |
| Msa0738850 | Msa0819340 | 0.922595 | 8.012763e-89 | -8.615850e-47 |
| Msa0738860 | Msa0819340 | 0.911186 | 8.084886e-83 | -8.615850e-47 |
| Msa0738870 | Msa0819340 | 0.859820 | 3.173744e-63 | -8.615850e-47 |
| Msa0756310 | Msa0819340 | 0.811302 | 7.494891e-51 | -8.615850e-47 |
| Msa0758220 | Msa0819340 | 0.801417 | 9.095012e-49 | -8.615850e-47 |
| Msa0763880 | Msa0819340 | 0.802866 | 4.578218e-49 | -8.615850e-47 |
| Msa0766470 | Msa0819340 | 0.813459 | 2.532808e-51 | -8.615850e-47 |
| Msa0782330 | Msa0819340 | 0.807198 | 5.683783e-50 | -8.615850e-47 |
| Msa0783260 | Msa0819340 | 0.920994 | 6.311081e-88 | -8.615850e-47 |
| Msa0783270 | Msa0819340 | 0.913066 | 9.466435e-84 | -8.615850e-47 |
| Msa0784640 | Msa0819340 | 0.806183 | 9.307988e-50 | -8.615850e-47 |
| Msa0803130 | Msa0819340 | 0.815628 | 8.387608e-52 | -8.615850e-47 |
| Msa0819330 | Msa0819340 | 0.851454 | 8.782359e-61 | -8.615850e-47 |
| Msa0819340 | Msa0819350 | 0.977205 | 2.559495e-143 | -8.615850e-47 |
| Msa0819340 | Msa0819360 | 0.840578 | 7.993123e-58 | -8.615850e-47 |
| Msa0819340 | Msa0841490 | 0.815014 | 1.148155e-51 | -8.615850e-47 |
| Msa0819340 | Msa0859520 | 0.860063 | 2.681585e-63 | -8.615850e-47 |
| Msa0819340 | Msa0859530 | 0.900948 | 4.392184e-78 | -8.615850e-47 |
| Msa0819340 | Msa0877420 | 0.852687 | 3.921059e-61 | -8.615850e-47 |
| Msa0819340 | Msa0922540 | 0.817235 | 3.663917e-52 | -8.615850e-47 |
| Msa0819340 | Msa0942730 | 0.818466 | 1.931801e-52 | -8.615850e-47 |
| Msa0819340 | Msa0955300 | 0.830217 | 3.326010e-55 | -8.615850e-47 |
| Msa0819340 | Msa0955310 | 0.838583 | 2.638038e-57 | -8.615850e-47 |
| Msa0819340 | Msa0979550 | 0.811602 | 6.450206e-51 | -8.615850e-47 |
| Msa0819340 | Msa0996090 | 0.800099 | 1.689729e-48 | -8.615850e-47 |
| Msa0819340 | Msa1002040 | 0.811642 | 6.320361e-51 | -8.615850e-47 |
| Msa0819340 | Msa1043870 | 0.801845 | 7.429438e-49 | -8.615850e-47 |
| Msa0819340 | Msa1089530 | 0.814544 | 1.459666e-51 | -8.615850e-47 |
| Msa0819340 | Msa1099690 | 0.803361 | 3.615807e-49 | -8.615850e-47 |
| Msa0819340 | Msa1116150 | 0.812613 | 3.881341e-51 | -8.615850e-47 |
| Msa0819340 | Msa1157730 | 0.805317 | 1.415042e-49 | -8.615850e-47 |
| Msa0819340 | Msa1162560 | 0.800711 | 1.267592e-48 | -8.615850e-47 |
| Msa0819340 | Msa1198450 | 0.804565 | 2.032009e-49 | -8.615850e-47 |
| Msa0819340 | Msa1218650 | 0.815761 | 7.833806e-52 | -8.615850e-47 |
| Msa0819340 | Msa1237030 | 0.814617 | 1.406318e-51 | -8.615850e-47 |
| Msa0819340 | Msa1305740 | 0.812789 | 3.552060e-51 | -8.615850e-47 |
| Msa0819340 | Msa1306200 | 0.804111 | 2.526823e-49 | -8.615850e-47 |
| Msa0819340 | Msa1323060 | 0.815497 | 8.967416e-52 | -8.615850e-47 |
| Msa0819340 | Msa1335720 | 0.800928 | 1.144662e-48 | -8.615850e-47 |
| Msa0819340 | Msa1381130 | 0.802769 | 4.794555e-49 | -8.615850e-47 |
| Msa0819340 | Msa1382720 | 0.806812 | 6.858285e-50 | -8.615850e-47 |
| Msa0819340 | Msa1405770 | 0.806742 | 7.096222e-50 | -8.615850e-47 |
| Msa0819340 | Msa1412080 | 0.816335 | 5.831921e-52 | -8.615850e-47 |
| Msa0819340 | Msa1419110 | 0.808940 | 2.419023e-50 | -8.615850e-47 |
| Msa0819340 | Msa1431730 | 0.800984 | 1.115357e-48 | -8.615850e-47 |
| Msa0819340 | Msa1434020 | 0.817403 | 3.357517e-52 | -8.615850e-47 |
| Msa0819340 | Msa1439230 | 0.814838 | 1.256391e-51 | -8.615850e-47 |
| Msa0819340 | Msa1450020 | 0.832799 | 7.691612e-56 | -8.615850e-47 |
| Msa0132620 | Msa0819340 | 0.814414 | 1.559523e-51 | -8.615850e-47 |
| Msa0143080 | Msa0819340 | 0.811053 | 8.483388e-51 | -8.615850e-47 |
| Msa0146470 | Msa0819340 | 0.809122 | 2.211149e-50 | -8.615850e-47 |
| Msa0151690 | Msa0819340 | 0.823505 | 1.336304e-53 | -8.615850e-47 |
| Msa0185390 | Msa0819340 | 0.804503 | 2.094287e-49 | -8.615850e-47 |
| Msa0236980 | Msa0819340 | 0.811511 | 6.749380e-51 | -8.615850e-47 |
| Msa0482680 | Msa0819340 | 0.800089 | 1.697232e-48 | -8.615850e-47 |
| Msa0277530 | Msa0819340 | 0.812775 | 3.576962e-51 | -8.615850e-47 |
| Msa0282170 | Msa0819340 | 0.826260 | 2.990381e-54 | -8.615850e-47 |
| Msa0292180 | Msa0819340 | 0.808841 | 2.540466e-50 | -8.615850e-47 |
| Msa0497420 | Msa0819340 | 0.810722 | 1.000969e-50 | -8.615850e-47 |
| Msa0538260 | Msa0819340 | 0.826638 | 2.430216e-54 | -8.615850e-47 |
| Msa0579340 | Msa0819340 | 0.801944 | 7.090083e-49 | -8.615850e-47 |
| Msa0583310 | Msa0819340 | 0.810461 | 1.139487e-50 | -8.615850e-47 |
| Msa0590660 | Msa0819340 | 0.824024 | 1.009949e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819340 | MtrunA17_Chr5g0438511 | 86.000 | 50 | 6 | 1 | 1 | 49 | 1 | 50 | 2.11e-22 | 89.4 |
| Msa0819340 | MtrunA17_Chr5g0438501 | 84.314 | 51 | 7 | 1 | 1 | 50 | 1 | 51 | 1.72e-21 | 86.7 |
| Msa0819340 | MtrunA17_Chr5g0438491 | 98.000 | 50 | 1 | 0 | 1 | 50 | 1 | 50 | 2.36e-19 | 80.9 |
| Msa0819340 | MtrunA17_Chr5g0438441 | 54.839 | 93 | 29 | 5 | 1 | 90 | 1 | 83 | 6.32e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 108 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTACCACCTCCATATT+TGG | 0.177321 | 5_3:-55754668 | None:intergenic |
| AACTTCCACCGATGCTAAAA+AGG | 0.195603 | 5_3:+55753829 | Msa0819340:CDS |
| TTGAACAATGGATTCGAAAA+AGG | 0.281503 | 5_3:+55753736 | Msa0819340:exon |
| GTTGTAGCCGCCACCATATT+TGG | 0.288929 | 5_3:-55754365 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5_3:+55754655 | Msa0819340:CDS |
| GGAGGGAAGGAGGGAGATGT+AGG | 0.371149 | 5_3:-55753642 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+GGG | 0.404226 | 5_3:+55754490 | Msa0819340:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.415260 | 5_3:+55754487 | Msa0819340:CDS |
| GGTCACGGTGGTCACGGTGG+AGG | 0.419681 | 5_3:+55754511 | Msa0819340:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.425233 | 5_3:+55754547 | Msa0819340:CDS |
| AGGTGGTTACAATGGTGGTG+GGG | 0.426416 | 5_3:+55754489 | Msa0819340:CDS |
| GAAGTAAATGATGCCAAATA+TGG | 0.434415 | 5_3:+55754352 | Msa0819340:CDS |
| GGTGGAGGTCATGGTGGTCA+TGG | 0.435429 | 5_3:+55754589 | Msa0819340:CDS |
| TACAATGGTGGTGGAGGTCA+TGG | 0.435594 | 5_3:+55754580 | Msa0819340:CDS |
| TTTGAGTGTTGTCCTCAGTT+TGG | 0.439668 | 5_3:-55754810 | None:intergenic |
| CACGGTGGTCACGGTGGAGG+TGG | 0.441060 | 5_3:+55754514 | Msa0819340:CDS |
| GAAGTGTGCTCTATATATAA+TGG | 0.448305 | 5_3:-55753663 | None:intergenic |
| CACGGTGGACATGGTGGCCA+TGG | 0.451717 | 5_3:+55754763 | Msa0819340:CDS |
| CATGCTAAGCCTCTTGGCTA+TGG | 0.452537 | 5_3:+55753766 | Msa0819340:CDS |
| CACGGTGGACACGGTGGACA+TGG | 0.456773 | 5_3:+55754754 | Msa0819340:CDS |
| GAGGTGGTTACAATGGTGGT+GGG | 0.460517 | 5_3:+55754488 | Msa0819340:CDS |
| CATGGTGGCCATGGTGGTCA+CGG | 0.466257 | 5_3:+55754772 | Msa0819340:CDS |
| CACGGTGGTCATGGTGGAGG+TGG | 0.469838 | 5_3:+55754556 | Msa0819340:CDS |
| GAGGGAAGGAGGGAGATGTA+GGG | 0.476081 | 5_3:-55753641 | None:intergenic |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5_3:+55754571 | Msa0819340:CDS |
| CACGGTGGTGGCTACAACCA+CGG | 0.484705 | 5_3:+55754421 | Msa0819340:CDS |
| GGTCACGGTGGTCATGGTGG+AGG | 0.488013 | 5_3:+55754553 | Msa0819340:CDS |
| AATCCTCATGCTAAGCCTCT+TGG | 0.494599 | 5_3:+55753760 | Msa0819340:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5_3:+55754532 | Msa0819340:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5_3:+55754574 | Msa0819340:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5_3:+55754538 | Msa0819340:CDS |
| AGTGTTGTCCTCAGTTTGGT+CGG | 0.506970 | 5_3:-55754806 | None:intergenic |
| TATGGTGGCGGCTACAACCA+TGG | 0.507111 | 5_3:+55754370 | Msa0819340:CDS |
| TTTCCTCAGTGATGTCCGCT+AGG | 0.509380 | 5_3:+55753795 | Msa0819340:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.510095 | 5_3:+55754430 | Msa0819340:CDS |
| GGTGGTTACCACAATGGTGG+TGG | 0.512481 | 5_3:+55754448 | Msa0819340:CDS |
| GGCGGTTACAACCACGGTGG+AGG | 0.514615 | 5_3:+55754469 | Msa0819340:CDS |
| CATGGTGGTCACGGTGGACA+CGG | 0.515497 | 5_3:+55754781 | Msa0819340:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.515766 | 5_3:+55754709 | Msa0819340:CDS |
| GGTGGCTACAACCACGGTGG+AGG | 0.521180 | 5_3:+55754427 | Msa0819340:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.522016 | 5_3:+55754565 | Msa0819340:CDS |
| TATATATAATGGAGGGAAGG+AGG | 0.528749 | 5_3:-55753652 | None:intergenic |
| GGAGGTGGTCACGGTGGACA+CGG | 0.533640 | 5_3:+55754745 | Msa0819340:CDS |
| AGTAATTACAACGATGGTAG+AGG | 0.535647 | 5_3:+55754685 | Msa0819340:CDS |
| GGTAGAGGTGGCTACAACCA+CGG | 0.539916 | 5_3:+55754700 | Msa0819340:CDS |
| TTCCTCAGTGATGTCCGCTA+GGG | 0.540952 | 5_3:+55753796 | Msa0819340:CDS |
| GGCGGCTACAACCATGGTGG+TGG | 0.546763 | 5_3:+55754376 | Msa0819340:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5_3:+55754529 | Msa0819340:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.560417 | 5_3:+55754730 | Msa0819340:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.562762 | 5_3:+55754472 | Msa0819340:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5_3:+55754523 | Msa0819340:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.568751 | 5_3:+55754727 | Msa0819340:CDS |
| GGTTACCACAATGGTGGTGG+CGG | 0.574406 | 5_3:+55754451 | Msa0819340:CDS |
| ATATATAATGGAGGGAAGGA+GGG | 0.578217 | 5_3:-55753651 | None:intergenic |
| AACCACGGTGGAGGTGGTCA+CGG | 0.578947 | 5_3:+55754736 | Msa0819340:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.582186 | 5_3:+55754481 | Msa0819340:CDS |
| CTCTATATATAATGGAGGGA+AGG | 0.583052 | 5_3:-55753655 | None:intergenic |
| GGAGGTCACGGTGGTCATGG+TGG | 0.586548 | 5_3:+55754550 | Msa0819340:CDS |
| AATGATGCCAAATATGGAGG+TGG | 0.589889 | 5_3:+55754661 | Msa0819340:CDS |
| GGAGGTTATAACCACGGTGG+TGG | 0.593426 | 5_3:+55754409 | Msa0819340:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.603294 | 5_3:+55754391 | Msa0819340:CDS |
| GGTGGCTACAACCACGGTGG+AGG | 0.603384 | 5_3:+55754706 | Msa0819340:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5_3:+55754568 | Msa0819340:CDS |
| GTGTGCTCTATATATAATGG+AGG | 0.615419 | 5_3:-55753660 | None:intergenic |
| GGAGGTCATGGTGGTCATGG+CGG | 0.615530 | 5_3:+55754592 | Msa0819340:CDS |
| AATGATGCCAAATATGGTGG+CGG | 0.618610 | 5_3:+55754358 | Msa0819340:CDS |
| CATGGTGGTGGTTACAATGG+TGG | 0.620372 | 5_3:+55754388 | Msa0819340:CDS |
| GGTGGTGGCGGTTACAACCA+CGG | 0.630576 | 5_3:+55754463 | Msa0819340:CDS |
| AACCATGGTGGTGGTTACAA+TGG | 0.632166 | 5_3:+55754385 | Msa0819340:CDS |
| ATCTGTTGCCGTGCAAACTG+AGG | 0.633170 | 5_3:+55754621 | Msa0819340:CDS |
| GGTGGACATGGTGGCCATGG+TGG | 0.633718 | 5_3:+55754766 | Msa0819340:CDS |
| TGTAACCGCCACCACCATTG+TGG | 0.638615 | 5_3:-55754456 | None:intergenic |
| AATGGTGGTGGAGGTCATGG+TGG | 0.646548 | 5_3:+55754583 | Msa0819340:CDS |
| GGTGGCCATGGTGGTCACGG+TGG | 0.648775 | 5_3:+55754775 | Msa0819340:CDS |
| GGTGGAGGTGGTTACCACAA+TGG | 0.652457 | 5_3:+55754442 | Msa0819340:CDS |
| AATTACAACGATGGTAGAGG+TGG | 0.652701 | 5_3:+55754688 | Msa0819340:CDS |
| GGTGGACACGGTGGACATGG+TGG | 0.654274 | 5_3:+55754757 | Msa0819340:CDS |
| GTTAAACAGATATTGAACAA+TGG | 0.654336 | 5_3:+55753724 | Msa0819340:exon |
| TAGCCAAGAGGCTTAGCATG+AGG | 0.658082 | 5_3:-55753763 | None:intergenic |
| CACGGTGGAGGTGGTCACGG+TGG | 0.660681 | 5_3:+55754739 | Msa0819340:CDS |
| TGTGCTCTATATATAATGGA+GGG | 0.663392 | 5_3:-55753659 | None:intergenic |
| CGTGTCCACCGTGACCACCA+TGG | 0.663650 | 5_3:-55754780 | None:intergenic |
| GGTGGTCACGGTGGACACGG+TGG | 0.663754 | 5_3:+55754748 | Msa0819340:CDS |
| CACCATTGTAACCACCACCA+TGG | 0.664810 | 5_3:-55754387 | None:intergenic |
| GGTGGTAGTAATTACAACGA+TGG | 0.680382 | 5_3:+55754679 | Msa0819340:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5_3:+55754484 | Msa0819340:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5_3:+55754526 | Msa0819340:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5_3:+55754721 | Msa0819340:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.688584 | 5_3:-55754738 | None:intergenic |
| ACACGGTGCCGACCAAACTG+AGG | 0.694971 | 5_3:+55754798 | Msa0819340:CDS |
| GTAAATGATGCCAAATATGG+AGG | 0.695370 | 5_3:+55754658 | Msa0819340:CDS |
| GTAAATGATGCCAAATATGG+TGG | 0.699265 | 5_3:+55754355 | Msa0819340:CDS |
| GGAGGTGGTTACCACAATGG+TGG | 0.699554 | 5_3:+55754445 | Msa0819340:CDS |
| AAATAAGAGCCATAGCCAAG+AGG | 0.700367 | 5_3:-55753775 | None:intergenic |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5_3:+55754541 | Msa0819340:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5_3:+55754403 | Msa0819340:CDS |
| TGTGGTAACCACCTCCACCG+TGG | 0.717584 | 5_3:-55754438 | None:intergenic |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5_3:-55754717 | None:intergenic |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5_3:-55753810 | None:intergenic |
| GTCCCTAGCGGACATCACTG+AGG | 0.722830 | 5_3:-55753798 | None:intergenic |
| CATTGTAACCACCTCCACCG+TGG | 0.728784 | 5_3:-55754480 | None:intergenic |
| CGTGGTTGTAGCCACCACCG+TGG | 0.737277 | 5_3:-55754420 | None:intergenic |
| GGTGGTGGCTACAACCACGG+TGG | 0.776238 | 5_3:+55754424 | Msa0819340:CDS |
| GGTGGCGGTTACAACCACGG+TGG | 0.777031 | 5_3:+55754466 | Msa0819340:CDS |
| AGAGGTGGCTACAACCACGG+TGG | 0.781749 | 5_3:+55754703 | Msa0819340:CDS |
| GGTGGCGGCTACAACCATGG+TGG | 0.788220 | 5_3:+55754373 | Msa0819340:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5_3:+55754724 | Msa0819340:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.800098 | 5_3:+55754406 | Msa0819340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTATATAATATTG+AGG | - | chr5_3:55754018-55754037 | None:intergenic | 10.0% |
| !!! | ATATTTTTCTTTTTTTTGAA+GGG | - | chr5_3:55754207-55754226 | None:intergenic | 10.0% |
| !!! | TATATTTTTCTTTTTTTTGA+AGG | - | chr5_3:55754208-55754227 | None:intergenic | 10.0% |
| !!! | TCATTTTTTATATAATATTG+AGG | - | chr5_3:55754018-55754037 | None:intergenic | 10.0% |
| !!! | ATATTTTTCTTTTTTTTGAA+GGG | - | chr5_3:55754207-55754226 | None:intergenic | 10.0% |
| !!! | TATATTTTTCTTTTTTTTGA+AGG | - | chr5_3:55754208-55754227 | None:intergenic | 10.0% |
| !! | GAATCTTTAAATGAATAATA+AGG | - | chr5_3:55754293-55754312 | None:intergenic | 15.0% |
| !! | GAATCTTTAAATGAATAATA+AGG | - | chr5_3:55754293-55754312 | None:intergenic | 15.0% |
| !! | AAATTATTCAAACATTACAC+CGG | + | chr5_3:55754255-55754274 | Msa0819340:intron | 20.0% |
| !! | AAATTATTCAAACATTACAC+CGG | + | chr5_3:55754255-55754274 | Msa0819340:intron | 20.0% |
| ! | GTTAAACAGATATTGAACAA+TGG | + | chr5_3:55753724-55753743 | Msa0819340:exon | 25.0% |
| !!! | ATTCTTTCCTACTTTTTTGA+AGG | + | chr5_3:55753915-55753934 | Msa0819340:intron | 25.0% |
| ! | GAATTATCCTTCAAAAAAGT+AGG | - | chr5_3:55753925-55753944 | None:intergenic | 25.0% |
| ! | AATAAGGAATATCAAAACAC+CGG | - | chr5_3:55754277-55754296 | None:intergenic | 25.0% |
| ! | GTTAAACAGATATTGAACAA+TGG | + | chr5_3:55753724-55753743 | Msa0819340:exon | 25.0% |
| !!! | ATTCTTTCCTACTTTTTTGA+AGG | + | chr5_3:55753915-55753934 | Msa0819340:intron | 25.0% |
| ! | GAATTATCCTTCAAAAAAGT+AGG | - | chr5_3:55753925-55753944 | None:intergenic | 25.0% |
| ! | AATAAGGAATATCAAAACAC+CGG | - | chr5_3:55754277-55754296 | None:intergenic | 25.0% |
| ! | TGTGCTCTATATATAATGGA+GGG | - | chr5_3:55753662-55753681 | None:intergenic | 30.0% |
| GAAGTGTGCTCTATATATAA+TGG | - | chr5_3:55753666-55753685 | None:intergenic | 30.0% | |
| ! | TTGAACAATGGATTCGAAAA+AGG | + | chr5_3:55753736-55753755 | Msa0819340:exon | 30.0% |
| TTCAATAAGAAGTTGTTGAG+TGG | + | chr5_3:55754228-55754247 | Msa0819340:intron | 30.0% | |
| CATATATATTGTGTTTGCAG+AGG | + | chr5_3:55754312-55754331 | Msa0819340:intron | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | + | chr5_3:55754352-55754371 | Msa0819340:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | + | chr5_3:55754352-55754371 | Msa0819340:CDS | 30.0% | |
| ! | TGTGCTCTATATATAATGGA+GGG | - | chr5_3:55753662-55753681 | None:intergenic | 30.0% |
| GAAGTGTGCTCTATATATAA+TGG | - | chr5_3:55753666-55753685 | None:intergenic | 30.0% | |
| ! | TTGAACAATGGATTCGAAAA+AGG | + | chr5_3:55753736-55753755 | Msa0819340:exon | 30.0% |
| TTCAATAAGAAGTTGTTGAG+TGG | + | chr5_3:55754228-55754247 | Msa0819340:intron | 30.0% | |
| CATATATATTGTGTTTGCAG+AGG | + | chr5_3:55754312-55754331 | Msa0819340:intron | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | + | chr5_3:55754352-55754371 | Msa0819340:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | + | chr5_3:55754352-55754371 | Msa0819340:CDS | 30.0% | |
| ! | ATATATAATGGAGGGAAGGA+GGG | - | chr5_3:55753654-55753673 | None:intergenic | 35.0% |
| ! | TATATATAATGGAGGGAAGG+AGG | - | chr5_3:55753655-55753674 | None:intergenic | 35.0% |
| ! | CTCTATATATAATGGAGGGA+AGG | - | chr5_3:55753658-55753677 | None:intergenic | 35.0% |
| GTGTGCTCTATATATAATGG+AGG | - | chr5_3:55753663-55753682 | None:intergenic | 35.0% | |
| GTAAATGATGCCAAATATGG+TGG | + | chr5_3:55754355-55754374 | Msa0819340:CDS | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | + | chr5_3:55754355-55754374 | Msa0819340:CDS | 35.0% | |
| ATTACTACCACCTCCATATT+TGG | - | chr5_3:55754671-55754690 | None:intergenic | 35.0% | |
| AGTAATTACAACGATGGTAG+AGG | + | chr5_3:55754685-55754704 | Msa0819340:CDS | 35.0% | |
| ! | ATATATAATGGAGGGAAGGA+GGG | - | chr5_3:55753654-55753673 | None:intergenic | 35.0% |
| ! | TATATATAATGGAGGGAAGG+AGG | - | chr5_3:55753655-55753674 | None:intergenic | 35.0% |
| ! | CTCTATATATAATGGAGGGA+AGG | - | chr5_3:55753658-55753677 | None:intergenic | 35.0% |
| GTGTGCTCTATATATAATGG+AGG | - | chr5_3:55753663-55753682 | None:intergenic | 35.0% | |
| GTAAATGATGCCAAATATGG+TGG | + | chr5_3:55754355-55754374 | Msa0819340:CDS | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | + | chr5_3:55754355-55754374 | Msa0819340:CDS | 35.0% | |
| ATTACTACCACCTCCATATT+TGG | - | chr5_3:55754671-55754690 | None:intergenic | 35.0% | |
| AGTAATTACAACGATGGTAG+AGG | + | chr5_3:55754685-55754704 | Msa0819340:CDS | 35.0% | |
| AAATAAGAGCCATAGCCAAG+AGG | - | chr5_3:55753778-55753797 | None:intergenic | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | - | chr5_3:55753813-55753832 | None:intergenic | 40.0% | |
| AACTTCCACCGATGCTAAAA+AGG | + | chr5_3:55753829-55753848 | Msa0819340:CDS | 40.0% | |
| ACTTCCACCGATGCTAAAAA+GGG | + | chr5_3:55753830-55753849 | Msa0819340:CDS | 40.0% | |
| !! | TAGCTCACCCTTTTTAGCAT+CGG | - | chr5_3:55753840-55753859 | None:intergenic | 40.0% |
| AATGATGCCAAATATGGTGG+CGG | + | chr5_3:55754358-55754377 | Msa0819340:CDS | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | + | chr5_3:55754403-55754422 | Msa0819340:CDS | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | - | chr5_3:55754632-55754651 | None:intergenic | 40.0% |
| AATGATGCCAAATATGGAGG+TGG | + | chr5_3:55754661-55754680 | Msa0819340:CDS | 40.0% | |
| GGTGGTAGTAATTACAACGA+TGG | + | chr5_3:55754679-55754698 | Msa0819340:CDS | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | + | chr5_3:55754688-55754707 | Msa0819340:CDS | 40.0% | |
| ! | TTTGAGTGTTGTCCTCAGTT+TGG | - | chr5_3:55754813-55754832 | None:intergenic | 40.0% |
| AAATAAGAGCCATAGCCAAG+AGG | - | chr5_3:55753778-55753797 | None:intergenic | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | - | chr5_3:55753813-55753832 | None:intergenic | 40.0% | |
| AACTTCCACCGATGCTAAAA+AGG | + | chr5_3:55753829-55753848 | Msa0819340:CDS | 40.0% | |
| ACTTCCACCGATGCTAAAAA+GGG | + | chr5_3:55753830-55753849 | Msa0819340:CDS | 40.0% | |
| !! | TAGCTCACCCTTTTTAGCAT+CGG | - | chr5_3:55753840-55753859 | None:intergenic | 40.0% |
| AATGATGCCAAATATGGTGG+CGG | + | chr5_3:55754358-55754377 | Msa0819340:CDS | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | + | chr5_3:55754403-55754422 | Msa0819340:CDS | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | - | chr5_3:55754632-55754651 | None:intergenic | 40.0% |
| AATGATGCCAAATATGGAGG+TGG | + | chr5_3:55754661-55754680 | Msa0819340:CDS | 40.0% | |
| GGTGGTAGTAATTACAACGA+TGG | + | chr5_3:55754679-55754698 | Msa0819340:CDS | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | + | chr5_3:55754688-55754707 | Msa0819340:CDS | 40.0% | |
| ! | TTTGAGTGTTGTCCTCAGTT+TGG | - | chr5_3:55754813-55754832 | None:intergenic | 40.0% |
| AATCCTCATGCTAAGCCTCT+TGG | + | chr5_3:55753760-55753779 | Msa0819340:CDS | 45.0% | |
| !! | AACCATGGTGGTGGTTACAA+TGG | + | chr5_3:55754385-55754404 | Msa0819340:CDS | 45.0% |
| AGTGTTGTCCTCAGTTTGGT+CGG | - | chr5_3:55754809-55754828 | None:intergenic | 45.0% | |
| AATCCTCATGCTAAGCCTCT+TGG | + | chr5_3:55753760-55753779 | Msa0819340:CDS | 45.0% | |
| !! | AACCATGGTGGTGGTTACAA+TGG | + | chr5_3:55754385-55754404 | Msa0819340:CDS | 45.0% |
| AGTGTTGTCCTCAGTTTGGT+CGG | - | chr5_3:55754809-55754828 | None:intergenic | 45.0% | |
| TAGCCAAGAGGCTTAGCATG+AGG | - | chr5_3:55753766-55753785 | None:intergenic | 50.0% | |
| CATGCTAAGCCTCTTGGCTA+TGG | + | chr5_3:55753766-55753785 | Msa0819340:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | + | chr5_3:55753795-55753814 | Msa0819340:CDS | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | + | chr5_3:55753796-55753815 | Msa0819340:CDS | 50.0% | |
| !! | CTCACCCTTTTTAGCATCGG+TGG | - | chr5_3:55753837-55753856 | None:intergenic | 50.0% |
| GTTGTAGCCGCCACCATATT+TGG | - | chr5_3:55754368-55754387 | None:intergenic | 50.0% | |
| CACCATTGTAACCACCACCA+TGG | - | chr5_3:55754390-55754409 | None:intergenic | 50.0% | |
| !! | CATGGTGGTGGTTACAATGG+TGG | + | chr5_3:55754388-55754407 | Msa0819340:CDS | 50.0% |
| GAGGTGGTTACAATGGTGGT+GGG | + | chr5_3:55754488-55754507 | Msa0819340:CDS | 50.0% | |
| ! | AGGTGGTTACAATGGTGGTG+GGG | + | chr5_3:55754489-55754508 | Msa0819340:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | + | chr5_3:55754538-55754557 | Msa0819340:CDS | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+TGG | + | chr5_3:55754565-55754584 | Msa0819340:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+TGG | + | chr5_3:55754538-55754557 | Msa0819340:CDS | 50.0% |
| ATCTGTTGCCGTGCAAACTG+AGG | + | chr5_3:55754621-55754640 | Msa0819340:CDS | 50.0% | |
| TAGCCAAGAGGCTTAGCATG+AGG | - | chr5_3:55753766-55753785 | None:intergenic | 50.0% | |
| CATGCTAAGCCTCTTGGCTA+TGG | + | chr5_3:55753766-55753785 | Msa0819340:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | + | chr5_3:55753795-55753814 | Msa0819340:CDS | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | + | chr5_3:55753796-55753815 | Msa0819340:CDS | 50.0% | |
| !! | CTCACCCTTTTTAGCATCGG+TGG | - | chr5_3:55753837-55753856 | None:intergenic | 50.0% |
| GTTGTAGCCGCCACCATATT+TGG | - | chr5_3:55754368-55754387 | None:intergenic | 50.0% | |
| CACCATTGTAACCACCACCA+TGG | - | chr5_3:55754390-55754409 | None:intergenic | 50.0% | |
| !! | CATGGTGGTGGTTACAATGG+TGG | + | chr5_3:55754388-55754407 | Msa0819340:CDS | 50.0% |
| GAGGTGGTTACAATGGTGGT+GGG | + | chr5_3:55754488-55754507 | Msa0819340:CDS | 50.0% | |
| ! | AGGTGGTTACAATGGTGGTG+GGG | + | chr5_3:55754489-55754508 | Msa0819340:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | + | chr5_3:55754538-55754557 | Msa0819340:CDS | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+TGG | + | chr5_3:55754565-55754584 | Msa0819340:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+TGG | + | chr5_3:55754538-55754557 | Msa0819340:CDS | 50.0% |
| ATCTGTTGCCGTGCAAACTG+AGG | + | chr5_3:55754621-55754640 | Msa0819340:CDS | 50.0% | |
| GAGGGAAGGAGGGAGATGTA+GGG | - | chr5_3:55753644-55753663 | None:intergenic | 55.0% | |
| !! | TATGGTGGCGGCTACAACCA+TGG | + | chr5_3:55754370-55754389 | Msa0819340:CDS | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | + | chr5_3:55754391-55754410 | Msa0819340:CDS | 55.0% |
| GGTGGAGGTTATAACCACGG+TGG | + | chr5_3:55754406-55754425 | Msa0819340:CDS | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | + | chr5_3:55754409-55754428 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACCACAA+TGG | + | chr5_3:55754442-55754461 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACCACAATGG+TGG | + | chr5_3:55754445-55754464 | Msa0819340:CDS | 55.0% | |
| GGTGGTTACCACAATGGTGG+TGG | + | chr5_3:55754448-55754467 | Msa0819340:CDS | 55.0% | |
| !! | GGTTACCACAATGGTGGTGG+CGG | + | chr5_3:55754451-55754470 | Msa0819340:CDS | 55.0% |
| TGTAACCGCCACCACCATTG+TGG | - | chr5_3:55754459-55754478 | None:intergenic | 55.0% | |
| CATTGTAACCACCTCCACCG+TGG | - | chr5_3:55754483-55754502 | None:intergenic | 55.0% | |
| CACGGTGGAGGTGGTTACAA+TGG | + | chr5_3:55754481-55754500 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_3:55754484-55754503 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | + | chr5_3:55754487-55754506 | Msa0819340:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+GGG | + | chr5_3:55754490-55754509 | Msa0819340:CDS | 55.0% |
| !! | TACAATGGTGGTGGGGGTCA+CGG | + | chr5_3:55754496-55754515 | Msa0819340:CDS | 55.0% |
| CACGGTGGAGGTGGTTACAA+TGG | + | chr5_3:55754481-55754500 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_3:55754484-55754503 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | + | chr5_3:55754487-55754506 | Msa0819340:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+AGG | + | chr5_3:55754490-55754509 | Msa0819340:CDS | 55.0% |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_3:55754484-55754503 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | + | chr5_3:55754487-55754506 | Msa0819340:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+AGG | + | chr5_3:55754490-55754509 | Msa0819340:CDS | 55.0% |
| !! | AATGGTGGTGGAGGTCATGG+TGG | + | chr5_3:55754583-55754602 | Msa0819340:CDS | 55.0% |
| GGTAGAGGTGGCTACAACCA+CGG | + | chr5_3:55754700-55754719 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | + | chr5_3:55754721-55754740 | Msa0819340:CDS | 55.0% | |
| GAGGGAAGGAGGGAGATGTA+GGG | - | chr5_3:55753644-55753663 | None:intergenic | 55.0% | |
| !! | TATGGTGGCGGCTACAACCA+TGG | + | chr5_3:55754370-55754389 | Msa0819340:CDS | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | + | chr5_3:55754391-55754410 | Msa0819340:CDS | 55.0% |
| GGTGGAGGTTATAACCACGG+TGG | + | chr5_3:55754406-55754425 | Msa0819340:CDS | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | + | chr5_3:55754409-55754428 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACCACAA+TGG | + | chr5_3:55754442-55754461 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACCACAATGG+TGG | + | chr5_3:55754445-55754464 | Msa0819340:CDS | 55.0% | |
| GGTGGTTACCACAATGGTGG+TGG | + | chr5_3:55754448-55754467 | Msa0819340:CDS | 55.0% | |
| !! | GGTTACCACAATGGTGGTGG+CGG | + | chr5_3:55754451-55754470 | Msa0819340:CDS | 55.0% |
| TGTAACCGCCACCACCATTG+TGG | - | chr5_3:55754459-55754478 | None:intergenic | 55.0% | |
| CATTGTAACCACCTCCACCG+TGG | - | chr5_3:55754483-55754502 | None:intergenic | 55.0% | |
| CACGGTGGAGGTGGTTACAA+TGG | + | chr5_3:55754481-55754500 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_3:55754484-55754503 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | + | chr5_3:55754487-55754506 | Msa0819340:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+GGG | + | chr5_3:55754490-55754509 | Msa0819340:CDS | 55.0% |
| !! | TACAATGGTGGTGGGGGTCA+CGG | + | chr5_3:55754496-55754515 | Msa0819340:CDS | 55.0% |
| CACGGTGGAGGTGGTTACAA+TGG | + | chr5_3:55754481-55754500 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_3:55754484-55754503 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | + | chr5_3:55754487-55754506 | Msa0819340:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+AGG | + | chr5_3:55754490-55754509 | Msa0819340:CDS | 55.0% |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_3:55754484-55754503 | Msa0819340:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | + | chr5_3:55754487-55754506 | Msa0819340:CDS | 55.0% | |
| !! | GGTGGTTACAATGGTGGTGG+AGG | + | chr5_3:55754490-55754509 | Msa0819340:CDS | 55.0% |
| !! | AATGGTGGTGGAGGTCATGG+TGG | + | chr5_3:55754583-55754602 | Msa0819340:CDS | 55.0% |
| GGTAGAGGTGGCTACAACCA+CGG | + | chr5_3:55754700-55754719 | Msa0819340:CDS | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | + | chr5_3:55754721-55754740 | Msa0819340:CDS | 55.0% | |
| GGAGGGAAGGAGGGAGATGT+AGG | - | chr5_3:55753645-55753664 | None:intergenic | 60.0% | |
| ! | GTCCCTAGCGGACATCACTG+AGG | - | chr5_3:55753801-55753820 | None:intergenic | 60.0% |
| ! | CACGGTGGTGGCTACAACCA+CGG | + | chr5_3:55754421-55754440 | Msa0819340:CDS | 60.0% |
| TGTGGTAACCACCTCCACCG+TGG | - | chr5_3:55754441-55754460 | None:intergenic | 60.0% | |
| !! | GGTGGTGGCGGTTACAACCA+CGG | + | chr5_3:55754463-55754482 | Msa0819340:CDS | 60.0% |
| GGTTACAACCACGGTGGAGG+TGG | + | chr5_3:55754472-55754491 | Msa0819340:CDS | 60.0% | |
| !! | AATGGTGGTGGAGGTCACGG+TGG | + | chr5_3:55754541-55754560 | Msa0819340:CDS | 60.0% |
| GGTGGAGGTCATGGTGGTCA+TGG | + | chr5_3:55754589-55754608 | Msa0819340:CDS | 60.0% | |
| GGAGGTCATGGTGGTCATGG+CGG | + | chr5_3:55754592-55754611 | Msa0819340:CDS | 60.0% | |
| AGAGGTGGCTACAACCACGG+TGG | + | chr5_3:55754703-55754722 | Msa0819340:CDS | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | - | chr5_3:55754720-55754739 | None:intergenic | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | + | chr5_3:55754724-55754743 | Msa0819340:CDS | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | + | chr5_3:55754727-55754746 | Msa0819340:CDS | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | + | chr5_3:55754472-55754491 | Msa0819340:CDS | 60.0% | |
| AACCACGGTGGAGGTGGTCA+CGG | + | chr5_3:55754736-55754755 | Msa0819340:CDS | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | + | chr5_3:55754772-55754791 | Msa0819340:CDS | 60.0% | |
| CATGGTGGTCACGGTGGACA+CGG | + | chr5_3:55754781-55754800 | Msa0819340:CDS | 60.0% | |
| !! | ACACGGTGCCGACCAAACTG+AGG | + | chr5_3:55754798-55754817 | Msa0819340:CDS | 60.0% |
| GGAGGGAAGGAGGGAGATGT+AGG | - | chr5_3:55753645-55753664 | None:intergenic | 60.0% | |
| ! | GTCCCTAGCGGACATCACTG+AGG | - | chr5_3:55753801-55753820 | None:intergenic | 60.0% |
| ! | CACGGTGGTGGCTACAACCA+CGG | + | chr5_3:55754421-55754440 | Msa0819340:CDS | 60.0% |
| TGTGGTAACCACCTCCACCG+TGG | - | chr5_3:55754441-55754460 | None:intergenic | 60.0% | |
| !! | GGTGGTGGCGGTTACAACCA+CGG | + | chr5_3:55754463-55754482 | Msa0819340:CDS | 60.0% |
| GGTTACAACCACGGTGGAGG+TGG | + | chr5_3:55754472-55754491 | Msa0819340:CDS | 60.0% | |
| !! | AATGGTGGTGGAGGTCACGG+TGG | + | chr5_3:55754541-55754560 | Msa0819340:CDS | 60.0% |
| GGTGGAGGTCATGGTGGTCA+TGG | + | chr5_3:55754589-55754608 | Msa0819340:CDS | 60.0% | |
| GGAGGTCATGGTGGTCATGG+CGG | + | chr5_3:55754592-55754611 | Msa0819340:CDS | 60.0% | |
| AGAGGTGGCTACAACCACGG+TGG | + | chr5_3:55754703-55754722 | Msa0819340:CDS | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | - | chr5_3:55754720-55754739 | None:intergenic | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | + | chr5_3:55754724-55754743 | Msa0819340:CDS | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | + | chr5_3:55754727-55754746 | Msa0819340:CDS | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | + | chr5_3:55754472-55754491 | Msa0819340:CDS | 60.0% | |
| AACCACGGTGGAGGTGGTCA+CGG | + | chr5_3:55754736-55754755 | Msa0819340:CDS | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | + | chr5_3:55754772-55754791 | Msa0819340:CDS | 60.0% | |
| CATGGTGGTCACGGTGGACA+CGG | + | chr5_3:55754781-55754800 | Msa0819340:CDS | 60.0% | |
| !! | ACACGGTGCCGACCAAACTG+AGG | + | chr5_3:55754798-55754817 | Msa0819340:CDS | 60.0% |
| ! | GGTGGCGGCTACAACCATGG+TGG | + | chr5_3:55754373-55754392 | Msa0819340:CDS | 65.0% |
| GGCGGCTACAACCATGGTGG+TGG | + | chr5_3:55754376-55754395 | Msa0819340:CDS | 65.0% | |
| CGTGGTTGTAGCCACCACCG+TGG | - | chr5_3:55754423-55754442 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTACAACCACGG+TGG | + | chr5_3:55754424-55754443 | Msa0819340:CDS | 65.0% |
| GGTGGCTACAACCACGGTGG+AGG | + | chr5_3:55754427-55754446 | Msa0819340:CDS | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | + | chr5_3:55754430-55754449 | Msa0819340:CDS | 65.0% | |
| ! | GGTGGCGGTTACAACCACGG+TGG | + | chr5_3:55754466-55754485 | Msa0819340:CDS | 65.0% |
| GGCGGTTACAACCACGGTGG+AGG | + | chr5_3:55754469-55754488 | Msa0819340:CDS | 65.0% | |
| !! | AATGGTGGTGGGGGTCACGG+TGG | + | chr5_3:55754499-55754518 | Msa0819340:CDS | 65.0% |
| GGTGGAGGTCACGGTGGTCA+TGG | + | chr5_3:55754547-55754566 | Msa0819340:CDS | 65.0% | |
| GGAGGTCACGGTGGTCATGG+TGG | + | chr5_3:55754550-55754569 | Msa0819340:CDS | 65.0% | |
| GGTCACGGTGGTCATGGTGG+AGG | + | chr5_3:55754553-55754572 | Msa0819340:CDS | 65.0% | |
| ! | CACGGTGGTCATGGTGGAGG+TGG | + | chr5_3:55754556-55754575 | Msa0819340:CDS | 65.0% |
| GGTGGCTACAACCACGGTGG+AGG | + | chr5_3:55754427-55754446 | Msa0819340:CDS | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | + | chr5_3:55754430-55754449 | Msa0819340:CDS | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | + | chr5_3:55754745-55754764 | Msa0819340:CDS | 65.0% | |
| CACGGTGGACACGGTGGACA+TGG | + | chr5_3:55754754-55754773 | Msa0819340:CDS | 65.0% | |
| GGTGGACACGGTGGACATGG+TGG | + | chr5_3:55754757-55754776 | Msa0819340:CDS | 65.0% | |
| CACGGTGGACATGGTGGCCA+TGG | + | chr5_3:55754763-55754782 | Msa0819340:CDS | 65.0% | |
| GGTGGACATGGTGGCCATGG+TGG | + | chr5_3:55754766-55754785 | Msa0819340:CDS | 65.0% | |
| CGTGTCCACCGTGACCACCA+TGG | - | chr5_3:55754783-55754802 | None:intergenic | 65.0% | |
| ! | GGTGGCGGCTACAACCATGG+TGG | + | chr5_3:55754373-55754392 | Msa0819340:CDS | 65.0% |
| GGCGGCTACAACCATGGTGG+TGG | + | chr5_3:55754376-55754395 | Msa0819340:CDS | 65.0% | |
| CGTGGTTGTAGCCACCACCG+TGG | - | chr5_3:55754423-55754442 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTACAACCACGG+TGG | + | chr5_3:55754424-55754443 | Msa0819340:CDS | 65.0% |
| GGTGGCTACAACCACGGTGG+AGG | + | chr5_3:55754427-55754446 | Msa0819340:CDS | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | + | chr5_3:55754430-55754449 | Msa0819340:CDS | 65.0% | |
| ! | GGTGGCGGTTACAACCACGG+TGG | + | chr5_3:55754466-55754485 | Msa0819340:CDS | 65.0% |
| GGCGGTTACAACCACGGTGG+AGG | + | chr5_3:55754469-55754488 | Msa0819340:CDS | 65.0% | |
| !! | AATGGTGGTGGGGGTCACGG+TGG | + | chr5_3:55754499-55754518 | Msa0819340:CDS | 65.0% |
| GGTGGAGGTCACGGTGGTCA+TGG | + | chr5_3:55754547-55754566 | Msa0819340:CDS | 65.0% | |
| GGAGGTCACGGTGGTCATGG+TGG | + | chr5_3:55754550-55754569 | Msa0819340:CDS | 65.0% | |
| GGTCACGGTGGTCATGGTGG+AGG | + | chr5_3:55754553-55754572 | Msa0819340:CDS | 65.0% | |
| ! | CACGGTGGTCATGGTGGAGG+TGG | + | chr5_3:55754556-55754575 | Msa0819340:CDS | 65.0% |
| GGTGGCTACAACCACGGTGG+AGG | + | chr5_3:55754427-55754446 | Msa0819340:CDS | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | + | chr5_3:55754430-55754449 | Msa0819340:CDS | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | + | chr5_3:55754745-55754764 | Msa0819340:CDS | 65.0% | |
| CACGGTGGACACGGTGGACA+TGG | + | chr5_3:55754754-55754773 | Msa0819340:CDS | 65.0% | |
| GGTGGACACGGTGGACATGG+TGG | + | chr5_3:55754757-55754776 | Msa0819340:CDS | 65.0% | |
| CACGGTGGACATGGTGGCCA+TGG | + | chr5_3:55754763-55754782 | Msa0819340:CDS | 65.0% | |
| GGTGGACATGGTGGCCATGG+TGG | + | chr5_3:55754766-55754785 | Msa0819340:CDS | 65.0% | |
| CGTGTCCACCGTGACCACCA+TGG | - | chr5_3:55754783-55754802 | None:intergenic | 65.0% | |
| GGTGGGGGTCACGGTGGTCA+CGG | + | chr5_3:55754505-55754524 | Msa0819340:CDS | 70.0% | |
| GGTCACGGTGGTCACGGTGG+AGG | + | chr5_3:55754511-55754530 | Msa0819340:CDS | 70.0% | |
| CACGGTGGTCACGGTGGAGG+TGG | + | chr5_3:55754514-55754533 | Msa0819340:CDS | 70.0% | |
| CACCGTGACCACCTCCACCG+TGG | - | chr5_3:55754741-55754760 | None:intergenic | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | + | chr5_3:55754739-55754758 | Msa0819340:CDS | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | + | chr5_3:55754748-55754767 | Msa0819340:CDS | 70.0% | |
| GGTGGCCATGGTGGTCACGG+TGG | + | chr5_3:55754775-55754794 | Msa0819340:CDS | 70.0% | |
| GGTGGGGGTCACGGTGGTCA+CGG | + | chr5_3:55754505-55754524 | Msa0819340:CDS | 70.0% | |
| GGTCACGGTGGTCACGGTGG+AGG | + | chr5_3:55754511-55754530 | Msa0819340:CDS | 70.0% | |
| CACGGTGGTCACGGTGGAGG+TGG | + | chr5_3:55754514-55754533 | Msa0819340:CDS | 70.0% | |
| CACCGTGACCACCTCCACCG+TGG | - | chr5_3:55754741-55754760 | None:intergenic | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | + | chr5_3:55754739-55754758 | Msa0819340:CDS | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | + | chr5_3:55754748-55754767 | Msa0819340:CDS | 70.0% | |
| GGTGGCCATGGTGGTCACGG+TGG | + | chr5_3:55754775-55754794 | Msa0819340:CDS | 70.0% | |
| GGGGGTCACGGTGGTCACGG+TGG | + | chr5_3:55754508-55754527 | Msa0819340:CDS | 75.0% | |
| GGGGGTCACGGTGGTCACGG+TGG | + | chr5_3:55754508-55754527 | Msa0819340:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55753602 | 55754837 | 55753602 | ID=Msa0819340;Name=Msa0819340 |
| chr5_3 | mRNA | 55753602 | 55754837 | 55753602 | ID=Msa0819340-mRNA-1;Parent=Msa0819340;Name=Msa0819340-mRNA-1;_AED=0.00;_eAED=0.03;_QI=141|1|0.5|1|1|1|2|0|204 |
| chr5_3 | exon | 55753602 | 55753851 | 55753602 | ID=Msa0819340-mRNA-1:exon:16854;Parent=Msa0819340-mRNA-1 |
| chr5_3 | exon | 55754332 | 55754837 | 55754332 | ID=Msa0819340-mRNA-1:exon:16855;Parent=Msa0819340-mRNA-1 |
| chr5_3 | five_prime_UTR | 55753602 | 55753742 | 55753602 | ID=Msa0819340-mRNA-1:five_prime_utr;Parent=Msa0819340-mRNA-1 |
| chr5_3 | CDS | 55753743 | 55753851 | 55753743 | ID=Msa0819340-mRNA-1:cds;Parent=Msa0819340-mRNA-1 |
| chr5_3 | CDS | 55754332 | 55754837 | 55754332 | ID=Msa0819340-mRNA-1:cds;Parent=Msa0819340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
