AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854380 MtrunA17_Chr5g0431581 87.857 560 14 4 1 506 1 560 0.0 981
Msa0854380 MtrunA17_Chr5g0437681 54.145 567 199 6 1 506 1 567 0.0 621
Msa0854380 MtrunA17_Chr3g0114211 53.667 559 204 5 3 506 12 570 0.0 607
Msa0854380 MtrunA17_Chr5g0404361 46.619 562 233 9 3 506 59 611 1.46e-170 494
Msa0854380 MtrunA17_Chr5g0404341 46.018 565 233 10 3 506 13 566 1.75e-165 480
Msa0854380 MtrunA17_Chr7g0238981 44.909 550 231 9 25 506 48 593 1.84e-160 468
Msa0854380 MtrunA17_Chr7g0238941 46.749 569 229 14 7 506 15 578 3.44e-160 467
Msa0854380 MtrunA17_Chr7g0238351 45.471 563 228 11 16 506 26 581 6.18e-160 466
Msa0854380 MtrunA17_Chr2g0278811 40.604 596 260 10 2 506 15 607 2.36e-158 463
Msa0854380 MtrunA17_Chr4g0005921 44.624 558 242 9 8 506 8 557 8.34e-157 457
Msa0854380 MtrunA17_Chr7g0237491 44.271 576 239 13 4 506 14 580 3.50e-156 457
Msa0854380 MtrunA17_Chr7g0237441 44.041 579 242 13 1 506 11 580 2.31e-155 454
Msa0854380 MtrunA17_Chr5g0429511 43.463 566 247 11 4 506 3 558 4.89e-155 453
Msa0854380 MtrunA17_Chr3g0104061 44.708 548 234 11 17 506 20 556 9.01e-150 439
Msa0854380 MtrunA17_Chr4g0031901 45.091 550 230 14 10 494 31 573 7.05e-149 438
Msa0854380 MtrunA17_Chr5g0436461 42.596 547 246 11 18 506 18 554 1.76e-145 428
Msa0854380 MtrunA17_Chr7g0240971 44.014 568 249 11 4 506 7 570 1.30e-144 427
Msa0854380 MtrunA17_Chr7g0240991 40.555 577 266 13 1 506 1 571 2.55e-144 426
Msa0854380 MtrunA17_Chr4g0008521 42.779 547 245 9 26 506 28 572 1.22e-143 424
Msa0854380 MtrunA17_Chr8g0346581 38.739 555 276 10 12 506 21 571 2.28e-135 403
Msa0854380 MtrunA17_Chr3g0133861 46.605 324 158 6 180 489 1 323 1.10e-94 291
Msa0854380 MtrunA17_Chr5g0436431 44.444 225 110 7 246 464 6 221 1.86e-51 174
Msa0854380 MtrunA17_Chr8g0382691 29.545 484 281 16 55 497 100 564 4.27e-41 155
Msa0854380 MtrunA17_Chr3g0118321 26.298 578 282 22 4 481 9 542 5.55e-39 149
Msa0854380 MtrunA17_Chr3g0133871 41.279 172 66 2 22 159 31 201 1.99e-38 140
Msa0854380 MtrunA17_Chr3g0118331 26.854 499 283 18 50 496 86 554 1.94e-32 130
Msa0854380 MtrunA17_Chr4g0056511 27.160 486 302 16 50 506 87 549 3.66e-32 130
Msa0854380 MtrunA17_Chr4g0043261 27.093 454 271 18 50 484 85 497 6.59e-32 129
Msa0854380 MtrunA17_Chr5g0402831 27.983 461 278 20 44 491 84 503 1.23e-31 128
Msa0854380 MtrunA17_Chr3g0079321 27.632 456 274 15 50 480 89 513 1.95e-31 127
Msa0854380 MtrunA17_Chr4g0043251 27.235 481 276 18 50 502 87 521 1.28e-30 125
Msa0854380 MtrunA17_Chr3g0121151 27.234 470 274 19 50 488 126 558 2.97e-29 121
Msa0854380 MtrunA17_Chr4g0038671 27.801 482 297 18 44 506 83 532 3.44e-29 120
Msa0854380 MtrunA17_Chr3g0121161 25.949 474 275 16 50 488 126 558 4.51e-29 120
Msa0854380 MtrunA17_Chr3g0121171 26.981 467 279 19 50 488 86 518 1.27e-28 120
Msa0854380 MtrunA17_Chr3g0121171 27.021 470 275 19 50 488 1236 1668 2.41e-28 120
Msa0854380 MtrunA17_Chr3g0121171 27.021 470 275 19 50 488 661 1093 3.56e-28 119
Msa0854380 MtrunA17_Chr3g0121171 25.738 474 276 16 50 488 1802 2234 4.73e-27 116
Msa0854380 MtrunA17_Chr3g0143671 28.448 464 276 19 44 491 83 506 2.72e-28 118
Msa0854380 MtrunA17_Chr4g0024861 26.694 487 297 18 44 506 80 530 1.72e-27 115
Msa0854380 MtrunA17_Chr8g0374271 26.154 455 297 16 44 491 84 506 1.82e-27 115
Msa0854380 MtrunA17_Chr2g0322441 29.358 436 257 17 44 463 83 483 1.48e-26 113
Msa0854380 MtrunA17_Chr4g0024641 29.009 424 254 17 53 463 14 403 4.35e-26 112
Msa0854380 MtrunA17_Chr8g0374261 26.531 441 280 17 53 484 92 497 3.48e-25 108
Msa0854380 MtrunA17_Chr1g0157341 26.835 436 272 14 44 465 82 484 3.54e-25 108
Msa0854380 MtrunA17_Chr7g0234061 27.033 455 264 19 44 465 82 501 5.55e-25 108
Msa0854380 MtrunA17_Chr4g0075071 28.018 439 259 20 44 463 84 484 5.50e-20 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854380 AT2G30210.1 63.588 563 143 5 5 506 9 570 0.0 717
Msa0854380 AT5G07130.1 58.772 570 170 8 1 506 1 569 0.0 646
Msa0854380 AT5G07130.2 64.536 485 141 7 52 506 1 484 0.0 617
Msa0854380 AT5G07130.3 64.536 485 141 7 52 506 1 484 0.0 617
Msa0854380 AT5G05390.1 54.545 561 195 8 3 506 8 565 0.0 609
Msa0854380 AT2G40370.1 52.431 576 203 7 2 506 5 580 0.0 607
Msa0854380 AT5G09360.1 44.050 563 250 10 1 506 15 569 2.42e-164 478
Msa0854380 AT2G29130.1 46.597 573 232 12 4 506 5 573 3.43e-163 474
Msa0854380 AT5G60020.1 45.893 560 217 13 25 506 26 577 2.19e-157 460
Msa0854380 AT5G60020.3 46.545 550 208 13 35 506 4 545 5.45e-157 458
Msa0854380 AT5G03260.1 44.920 561 240 10 4 506 8 557 5.87e-157 458
Msa0854380 AT2G38080.1 43.993 566 249 10 1 506 1 558 2.59e-154 451
Msa0854380 AT5G01190.1 44.345 557 244 9 8 506 10 558 1.95e-152 447
Msa0854380 AT5G01190.2 48.025 481 219 7 50 506 71 544 1.47e-149 439
Msa0854380 AT5G58910.2 43.110 566 250 9 4 506 11 567 6.48e-149 438
Msa0854380 AT5G58910.3 43.110 566 249 10 4 506 11 566 1.90e-148 437
Msa0854380 AT5G58910.1 44.487 526 228 8 37 506 6 523 4.57e-147 432
Msa0854380 AT3G09220.1 44.022 552 234 13 4 489 8 550 1.25e-142 422
Msa0854380 AT2G46570.1 40.214 562 272 10 5 506 12 569 1.78e-142 422
Msa0854380 AT1G18140.1 42.124 565 246 12 17 506 23 581 8.29e-140 415
Msa0854380 AT5G60020.2 45.988 511 197 12 25 464 26 528 7.17e-139 412
Msa0854380 AT2G46570.2 43.633 479 241 8 53 506 10 484 8.21e-139 409
Msa0854380 AT5G01040.1 40.357 560 262 10 11 506 15 566 3.69e-136 406
Msa0854380 AT3G09220.2 47.059 459 204 10 63 489 2 453 3.92e-134 397
Msa0854380 AT5G48100.1 40.112 536 254 12 24 496 22 553 1.02e-132 396
Msa0854380 AT5G01050.1 39.858 562 264 10 11 506 15 568 8.69e-131 392
Msa0854380 AT5G21100.1 28.542 480 267 17 55 485 90 542 4.16e-44 164
Msa0854380 AT4G39830.3 29.400 500 272 21 51 496 1 473 1.24e-41 155
Msa0854380 AT4G39830.2 29.435 496 269 21 55 496 7 475 5.52e-41 154
Msa0854380 AT4G39830.1 29.435 496 269 21 55 496 102 570 8.38e-41 155
Msa0854380 AT5G21105.1 28.423 482 268 19 54 484 103 558 2.55e-39 151
Msa0854380 AT4G39830.4 28.687 495 261 20 55 496 7 462 2.62e-37 143
Msa0854380 AT4G25240.2 28.776 490 288 19 50 506 89 550 5.49e-34 135
Msa0854380 AT4G25240.1 28.776 490 288 19 50 506 89 550 5.49e-34 135
Msa0854380 AT1G75790.1 29.318 440 261 16 44 465 80 487 1.38e-32 131
Msa0854380 AT5G21105.3 28.132 455 257 18 54 464 103 531 1.41e-32 131
Msa0854380 AT5G66920.1 27.992 493 281 18 44 506 90 538 9.92e-31 125
Msa0854380 AT5G48450.2 27.236 492 299 20 35 503 73 528 1.41e-29 122
Msa0854380 AT5G48450.1 27.329 483 292 20 44 503 82 528 2.10e-29 122
Msa0854380 AT5G51480.1 27.727 440 269 17 50 465 88 502 1.12e-28 120
Msa0854380 AT4G12420.1 28.112 466 282 18 44 485 78 514 5.77e-28 118
Msa0854380 AT4G12420.2 28.112 466 282 18 44 485 78 514 5.77e-28 118
Msa0854380 AT1G76160.1 28.935 432 267 17 44 465 81 482 1.06e-27 117
Msa0854380 AT1G21850.1 27.729 458 266 17 53 491 92 503 2.57e-27 115
Msa0854380 AT5G21105.2 28.739 341 200 12 163 484 51 367 5.56e-27 113
Msa0854380 AT1G41830.1 26.514 479 307 17 44 506 82 531 2.62e-26 112
Msa0854380 AT4G22010.1 26.778 478 309 16 44 506 79 530 3.04e-26 112
Msa0854380 AT1G21860.1 26.728 434 273 15 44 465 82 482 4.58e-26 112
Msa0854380 AT2G23630.2 28.571 483 292 21 44 506 88 537 5.86e-26 111
Msa0854380 AT2G23630.1 28.571 483 292 21 44 506 83 532 6.55e-26 111
Msa0854380 AT1G55570.1 25.166 453 263 16 50 470 89 497 1.71e-25 110
Msa0854380 AT3G13390.1 25.652 460 265 18 44 470 81 496 3.68e-24 106
Msa0854380 AT4G37160.1 26.681 476 311 16 44 506 84 534 2.78e-23 103
Msa0854380 AT4G28090.1 24.736 473 285 16 44 491 81 507 2.30e-22 100
Msa0854380 AT4G38420.1 25.727 447 269 17 44 465 83 491 4.07e-21 97.1
Msa0854380 AT1G55560.1 25.155 485 298 20 44 503 79 523 2.69e-20 94.4
Msa0854380 AT4G37160.2 29.864 221 144 5 44 259 84 298 1.67e-19 91.7
Msa0854380 AT3G13400.2 25.223 448 275 19 44 467 80 491 3.36e-19 91.3
Msa0854380 AT3G13400.1 25.223 448 275 19 44 467 80 491 3.36e-19 91.3
Msa0854380 AT4G38420.3 25.806 434 259 17 44 452 83 478 3.82e-19 90.9
Msa0854380 AT4G38420.2 33.166 199 118 6 44 232 83 276 1.72e-18 88.6

Find 128 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCGAAACACTTTAATTT+TGG 0.112254 5_4:+46825487 None:intergenic
CCTTGACACCTTGGACTATT+AGG 0.188458 5_4:+46825410 None:intergenic
TTTATAGTTGGTTCAGGTTT+TGG 0.221678 5_4:-46825089 Msa0854380:CDS
GCCACCATAGTGTTCCTTCT+TGG 0.231177 5_4:+46826854 None:intergenic
AATTGACCTTGGTACAATTA+TGG 0.233819 5_4:+46824404 None:intergenic
GTCTCGAAGGTGGTCTATTT+TGG 0.254779 5_4:+46825585 None:intergenic
CGAAGGATACTCACCGTAAA+TGG 0.256488 5_4:-46827204 Msa0854380:CDS
AATTGAGTGACATATAATTT+AGG 0.266720 5_4:+46824499 None:intergenic
ATTGTTGTGAATCAGGAATT+TGG 0.267922 5_4:-46824663 Msa0854380:intron
AAGTTGTTCAAGTTGAAATA+TGG 0.300472 5_4:-46825194 Msa0854380:CDS
AGAGAATTTCCCGTTCTTCT+TGG 0.306078 5_4:-46826739 Msa0854380:intron
AATGGTAAAGCCGGCAAAAT+AGG 0.318344 5_4:+46825563 None:intergenic
GCTTACTACAATGGTGTTCC+TGG 0.329058 5_4:-46825311 Msa0854380:CDS
CTCCATAGACAGTGGCTCTT+AGG 0.334059 5_4:+46826815 None:intergenic
AACGTAGCAGGATCAGTTCT+TGG 0.335909 5_4:+46825056 None:intergenic
ACATAGATTCACATCTCAAT+TGG 0.345519 5_4:-46824627 Msa0854380:CDS
GCCAGGAAACTGTCCATTTA+CGG 0.347312 5_4:+46827191 None:intergenic
TTCCTAAGAGCCACTGTCTA+TGG 0.354270 5_4:-46826817 Msa0854380:CDS
GGGTTTGGCAACAGCACTTT+TGG 0.375326 5_4:-46824605 Msa0854380:CDS
TTCACATCTCAATTGGGGTT+TGG 0.376065 5_4:-46824620 Msa0854380:CDS
CATAGATTCACATCTCAATT+GGG 0.380545 5_4:-46824626 Msa0854380:CDS
CCATTTGGTCCTTGACACCT+TGG 0.385637 5_4:+46825401 None:intergenic
GCTGCAAATCTTGTTCCATT+TGG 0.386553 5_4:+46825386 None:intergenic
TGCATTAAGGAAGTTGTTCT+AGG 0.389050 5_4:+46825335 None:intergenic
ATAATTGTACCAAGGTCAAT+TGG 0.393944 5_4:-46824402 Msa0854380:three_prime_UTR
GTTGTCAAATGCAGCATTCA+TGG 0.401840 5_4:+46825634 None:intergenic
CCACCTGTGAGGAATACTAT+TGG 0.412353 5_4:-46825020 Msa0854380:CDS
ATCTCCTGGTTGACCGTTCA+TGG 0.413530 5_4:+46826172 None:intergenic
GCATTCACATCAAGGATTAG+AGG 0.421253 5_4:-46825515 Msa0854380:CDS
TTATTGTTCACTGTAGGGTT+AGG 0.421636 5_4:-46825452 Msa0854380:CDS
TAACTTCCTCCTGGTTGGAT+TGG 0.434515 5_4:+46826901 None:intergenic
ATGCAGCATTCATGGCGGTT+TGG 0.436299 5_4:+46825642 None:intergenic
GAGGTATCACTGACTGTAAT+GGG 0.438774 5_4:+46824566 None:intergenic
TTGAACTGTATAGGAGGAAC+AGG 0.439285 5_4:+46825266 None:intergenic
GATCACCCTATGCATGTTCA+TGG 0.442341 5_4:-46825122 Msa0854380:CDS
GAAATGTTCCTAGGGGTTTG+TGG 0.445135 5_4:-46825235 Msa0854380:CDS
TCTCTAGTTGGCTTAGAGAA+AGG 0.447045 5_4:+46826757 None:intergenic
TGAAGATTACCAAGAAGAAC+GGG 0.448241 5_4:+46826730 None:intergenic
AGAACGGGAAATTCTCTAGT+TGG 0.448541 5_4:+46826745 None:intergenic
ATTACACAGGAAATGTTCCT+AGG 0.452764 5_4:-46825244 Msa0854380:CDS
CCTGTGTAATTGAACTGTAT+AGG 0.466472 5_4:+46825257 None:intergenic
CTGCAAAACAATTTGAACAT+TGG 0.467774 5_4:+46825169 None:intergenic
GTTTGTCTTAAGAGAGCCAT+TGG 0.471023 5_4:+46826236 None:intergenic
CCAAGGTGTCAAGGACCAAA+TGG 0.477385 5_4:-46825401 Msa0854380:CDS
GTGTATGCAACAGATACATT+TGG 0.482818 5_4:+46826194 None:intergenic
GTGAGTTTATTGTTCACTGT+AGG 0.484623 5_4:-46825458 Msa0854380:CDS
TAATTGTACCAAGGTCAATT+GGG 0.489561 5_4:-46824401 Msa0854380:three_prime_UTR
ATTGTAGTAAGCTTGCATTA+AGG 0.490056 5_4:+46825322 None:intergenic
TCGACAAGGTTGAACGTAGC+AGG 0.491890 5_4:+46825044 None:intergenic
TGAGTTTATTGTTCACTGTA+GGG 0.502703 5_4:-46825457 Msa0854380:CDS
AACACTAGAGTCCTCATGAT+AGG 0.504563 5_4:-46825740 Msa0854380:CDS
GGAGGTATCACTGACTGTAA+TGG 0.504892 5_4:+46824565 None:intergenic
TTGGAACACCTCCTGGTGGA+TGG 0.505700 5_4:-46825001 Msa0854380:CDS
TTGAGAAATCCATGGGCAGA+TGG 0.507515 5_4:-46826946 Msa0854380:CDS
AATACTATTGGAACACCTCC+TGG 0.507986 5_4:-46825008 Msa0854380:CDS
TGGAACACCTCCTGGTGGAT+GGG 0.516621 5_4:-46825000 Msa0854380:CDS
AAAACCAAGAAGGAACACTA+TGG 0.519751 5_4:-46826858 Msa0854380:CDS
ATGTGTAACTTCCTCCTGGT+TGG 0.527858 5_4:+46826896 None:intergenic
GTCACAGCCGATCAACCACC+TGG 0.528760 5_4:-46825692 Msa0854380:CDS
TTGAAGATTACCAAGAAGAA+CGG 0.530236 5_4:+46826729 None:intergenic
GCTGCCATGTAGTATCGGCC+AGG 0.530922 5_4:+46825674 None:intergenic
CTGCAACTGCATTCACATCA+AGG 0.532127 5_4:-46825523 Msa0854380:CDS
TGGAACCCATGAACATGCAT+AGG 0.532961 5_4:+46825116 None:intergenic
TGAGGTAGATCTGGTGGTGG+AGG 0.538755 5_4:+46824547 None:intergenic
GGACATTGTGTCACATAACT+AGG 0.538972 5_4:+46826922 None:intergenic
CGGTATGTGTAACTTCCTCC+TGG 0.542556 5_4:+46826892 None:intergenic
TTTACAATTCAAAACCAAGA+AGG 0.543934 5_4:-46826868 Msa0854380:CDS
TGTTTCATTTGCTGCAGCAG+AGG 0.548223 5_4:-46827371 Msa0854380:CDS
ATATTTCAACTTGAACAACT+TGG 0.548915 5_4:+46825196 None:intergenic
GTATCGGCCAGGTGGTTGAT+CGG 0.551980 5_4:+46825685 None:intergenic
TATCATGAGGACTCTAGTGT+TGG 0.554372 5_4:+46825742 None:intergenic
CTAGGTGTCCACAAACCCCT+AGG 0.555841 5_4:+46825227 None:intergenic
CGCGTGCTGCCATGTAGTAT+CGG 0.558373 5_4:+46825669 None:intergenic
GACATATACTTGAAAACGTA+CGG 0.558442 5_4:+46825880 None:intergenic
TTACACAGGAAATGTTCCTA+GGG 0.560206 5_4:-46825243 Msa0854380:CDS
ACCACCTGGCCGATACTACA+TGG 0.560583 5_4:-46825678 Msa0854380:CDS
CCTAATAGTCCAAGGTGTCA+AGG 0.568344 5_4:-46825410 Msa0854380:CDS
TAGCATTGAGGTAGATCTGG+TGG 0.573248 5_4:+46824541 None:intergenic
CGAATGGCGACCCATCCACC+AGG 0.580203 5_4:+46824990 None:intergenic
ATGGTTTGATAGAGATCCAA+TGG 0.580804 5_4:-46826252 Msa0854380:CDS
GGTTTGTGGACACCTAGAAA+AGG 0.582031 5_4:-46825221 Msa0854380:CDS
TGAGAAATCCATGGGCAGAT+GGG 0.582637 5_4:-46826945 Msa0854380:CDS
TACTAGTATAGTAACAATTG+AGG 0.584246 5_4:-46825144 Msa0854380:CDS
TTAAGACAAACACAGTTCAC+AGG 0.584771 5_4:-46826224 Msa0854380:CDS
CAAGTAATCCCAATTGACCT+TGG 0.586837 5_4:+46824393 None:intergenic
ATGAGGACTCTAGTGTTGGA+AGG 0.587715 5_4:+46825746 None:intergenic
TATGCAACAGATACATTTGG+AGG 0.588595 5_4:+46826197 None:intergenic
TTAATGCAAGCTTACTACAA+TGG 0.590912 5_4:-46825320 Msa0854380:CDS
TTCAAACTGCAACAGTGAAG+AGG 0.591115 5_4:-46827239 Msa0854380:CDS
ATCACCCTATGCATGTTCAT+GGG 0.594471 5_4:-46825121 Msa0854380:CDS
GTGGTTGATCGGCTGTGACA+AGG 0.595575 5_4:+46825696 None:intergenic
ATAGATTCACATCTCAATTG+GGG 0.596176 5_4:-46824625 Msa0854380:CDS
GCCGGCAAAATAGGTCTCGA+AGG 0.598354 5_4:+46825572 None:intergenic
TAACTAGGCCCATCTGCCCA+TGG 0.601549 5_4:+46826937 None:intergenic
CAGAATGACTGTTGTTGCTA+CGG 0.601727 5_4:-46825786 Msa0854380:CDS
AGGACATTGATTGTTTGACC+TGG 0.607085 5_4:+46825716 None:intergenic
AAACACTTACAACAAACTGA+TGG 0.608462 5_4:+46827341 None:intergenic
CATTGAGGTAGATCTGGTGG+TGG 0.610540 5_4:+46824544 None:intergenic
GCACAAATCCTAATAGTCCA+AGG 0.611114 5_4:-46825418 Msa0854380:CDS
TTAGGATGTTGAGAAATCCA+TGG 0.611446 5_4:-46826954 Msa0854380:intron
TTTGACCTGGTCCTATCATG+AGG 0.614547 5_4:+46825729 None:intergenic
GTGTAATTGAACTGTATAGG+AGG 0.616090 5_4:+46825260 None:intergenic
GGAACCCATGAACATGCATA+GGG 0.618003 5_4:+46825117 None:intergenic
CCTATACAGTTCAATTACAC+AGG 0.618962 5_4:-46825257 Msa0854380:CDS
CTATGGTGGCATGCTCACAC+TGG 0.620025 5_4:-46826841 Msa0854380:CDS
TAGGATGTTGAGAAATCCAT+GGG 0.620108 5_4:-46826953 Msa0854380:CDS
CCAATAGTATTCCTCACAGG+TGG 0.626541 5_4:+46825020 None:intergenic
TCCTCACAGGTGGATCGACA+AGG 0.628411 5_4:+46825030 None:intergenic
AGAGTCCTCATGATAGGACC+AGG 0.629037 5_4:-46825734 Msa0854380:CDS
GTTCCAATAGTATTCCTCAC+AGG 0.630506 5_4:+46825017 None:intergenic
AACTGTATAGGAGGAACAGG+AGG 0.636960 5_4:+46825269 None:intergenic
ACACAATGTCCAATCCAACC+AGG 0.647093 5_4:-46826910 Msa0854380:CDS
TCTGTTGCATACACCATGAA+CGG 0.651763 5_4:-46826185 Msa0854380:intron
CAAGGTCCATAATTGTACCA+AGG 0.661063 5_4:-46824410 Msa0854380:three_prime_UTR
TACACAGGAAATGTTCCTAG+GGG 0.663460 5_4:-46825242 Msa0854380:CDS
TGATGTGAATGCAGTTGCAG+TGG 0.665699 5_4:+46825526 None:intergenic
ACCAAGAAGGAACACTATGG+TGG 0.666226 5_4:-46826855 Msa0854380:CDS
TAGCAACAACAGTCATTCTG+TGG 0.668466 5_4:+46825789 None:intergenic
GGCAAAATAGGTCTCGAAGG+TGG 0.670490 5_4:+46825575 None:intergenic
AATGAAAGCTCCATAGACAG+TGG 0.677360 5_4:+46826807 None:intergenic
ACTATTGGAACACCTCCTGG+TGG 0.679776 5_4:-46825005 Msa0854380:CDS
ACCTTGTCGATCCACCTGTG+AGG 0.686020 5_4:-46825031 Msa0854380:CDS
GTCAAATGCAGCATTCATGG+CGG 0.689483 5_4:+46825637 None:intergenic
ATGGCGACCCATCCACCAGG+AGG 0.719284 5_4:+46824993 None:intergenic
AGAGGCTGTGCAAAACACGA+AGG 0.719687 5_4:-46827221 Msa0854380:CDS
GCCATGTAGTATCGGCCAGG+TGG 0.720037 5_4:+46825677 None:intergenic
AGGAACAGGAGGAAAATCTG+TGG 0.731627 5_4:+46825280 None:intergenic
CAATGTCCAATCCAACCAGG+AGG 0.746956 5_4:-46826907 Msa0854380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTCTGTAATATAA+AGG + chr5_4:46825738-46825757 None:intergenic 10.0%
!! TTTCATTATTTATCCAAAAA+TGG - chr5_4:46824994-46825013 Msa0854380:CDS 15.0%
!! TTCATTATTTATCCAAAAAT+GGG - chr5_4:46824995-46825014 Msa0854380:CDS 15.0%
!! AAAAAGAAATACAATCTATA+TGG + chr5_4:46827346-46827365 None:intergenic 15.0%
!!! TAAATACCAAGTTTGAAATA+TGG - chr5_4:46825260-46825279 Msa0854380:CDS 20.0%
!! TATTAAGAAGTTAAACTAGA+GGG + chr5_4:46825429-46825448 None:intergenic 20.0%
!! TTATTAAGAAGTTAAACTAG+AGG + chr5_4:46825430-46825449 None:intergenic 20.0%
!! AAAAACATATTCTGTCAATA+TGG + chr5_4:46825498-46825517 None:intergenic 20.0%
!!! AATATGTTTTTATGATGCAT+AGG - chr5_4:46825507-46825526 Msa0854380:CDS 20.0%
!!! ATATGTTTTTATGATGCATA+GGG - chr5_4:46825508-46825527 Msa0854380:CDS 20.0%
!! AAACTCAATCCTTTATATTA+CGG - chr5_4:46825798-46825817 Msa0854380:CDS 20.0%
!! TATAAAAACAATTACAATGC+AGG - chr5_4:46825880-46825899 Msa0854380:CDS 20.0%
!!! ATTTCGAAACACTTTAATTT+TGG + chr5_4:46826301-46826320 None:intergenic 20.0%
!!! ATGTGAATGTTTTTAAATCA+TGG - chr5_4:46827011-46827030 Msa0854380:intron 20.0%
!! TGAATTCAAAAATCAACATT+TGG + chr5_4:46827103-46827122 None:intergenic 20.0%
!! AATTGAGTGACATATAATTT+AGG + chr5_4:46827289-46827308 None:intergenic 20.0%
!!! ACTATTTTATGCTACTTACT+TGG - chr5_4:46824376-46824395 Msa0854380:three_prime_UTR 25.0%
! TAGTTAATACAGTTGCAAAT+TGG + chr5_4:46824502-46824521 None:intergenic 25.0%
! TAACTAACTTTAATGATTGC+TGG - chr5_4:46824516-46824535 Msa0854380:three_prime_UTR 25.0%
!! AAGTATTTAAGACCATAATG+AGG + chr5_4:46824721-46824740 None:intergenic 25.0%
! ATAGTGAATGTTTGGATAAA+CGG + chr5_4:46824766-46824785 None:intergenic 25.0%
!!! CTTGGTTTTGAATTGTAAAT+CGG + chr5_4:46824916-46824935 None:intergenic 25.0%
! TTTACAATTCAAAACCAAGA+AGG - chr5_4:46824917-46824936 Msa0854380:intron 25.0%
! TTTGATAAACTGTTCGAAAT+AGG - chr5_4:46825115-46825134 Msa0854380:CDS 25.0%
! ATTAAGAAGTTAAACTAGAG+GGG + chr5_4:46825428-46825447 None:intergenic 25.0%
!!! TATGTTTTTATGATGCATAG+GGG - chr5_4:46825509-46825528 Msa0854380:CDS 25.0%
!! TTTAGAATGATTTCAAACCT+TGG + chr5_4:46825656-46825675 None:intergenic 25.0%
!! GTTGATAAAAAAGTGACTAA+AGG - chr5_4:46825857-46825876 Msa0854380:CDS 25.0%
!!! TTTACCATTTTTTAACGACA+CGG - chr5_4:46826236-46826255 Msa0854380:CDS 25.0%
! ATATTTCAACTTGAACAACT+TGG + chr5_4:46826592-46826611 None:intergenic 25.0%
!!! AAGTTGTTCAAGTTGAAATA+TGG - chr5_4:46826591-46826610 Msa0854380:intron 25.0%
! TACTAGTATAGTAACAATTG+AGG - chr5_4:46826641-46826660 Msa0854380:intron 25.0%
! CTGAACCAACTATAAAAAAA+TGG + chr5_4:46826692-46826711 None:intergenic 25.0%
!!! CATTTTTTTATAGTTGGTTC+AGG - chr5_4:46826690-46826709 Msa0854380:intron 25.0%
! TAACATAAATGCATTATACC+TGG + chr5_4:46826837-46826856 None:intergenic 25.0%
! TCTCTTGCATAATTTATACT+AGG - chr5_4:46827053-46827072 Msa0854380:intron 25.0%
!!! ATGCTTTTATTTTAGCATTG+AGG + chr5_4:46827259-46827278 None:intergenic 25.0%
!! TTTCTTTTTGTGATGTTTCA+AGG - chr5_4:46827357-46827376 Msa0854380:CDS 25.0%
AAACACTTACAACAAACTGA+TGG + chr5_4:46824447-46824466 None:intergenic 30.0%
TAGTGAATGTTTGGATAAAC+GGG + chr5_4:46824765-46824784 None:intergenic 30.0%
TTGAAGATTACCAAGAAGAA+CGG + chr5_4:46825059-46825078 None:intergenic 30.0%
TCCAAATCCAAATCGAAATT+CGG + chr5_4:46825222-46825241 None:intergenic 30.0%
AATGGTCCATATTTCAAACT+TGG + chr5_4:46825269-46825288 None:intergenic 30.0%
GACCATTCAATCTTTATCAA+TGG - chr5_4:46825282-46825301 Msa0854380:CDS 30.0%
! TTTATCAATGGCCATTGATT+TGG - chr5_4:46825294-46825313 Msa0854380:CDS 30.0%
AAAACGATGTATGGAAGTAA+TGG + chr5_4:46825682-46825701 None:intergenic 30.0%
! CTGCAATTTAAAACGATGTA+TGG + chr5_4:46825691-46825710 None:intergenic 30.0%
GACATATACTTGAAAACGTA+CGG + chr5_4:46825908-46825927 None:intergenic 30.0%
!!! GTACGTTTTCAAGTATATGT+CGG - chr5_4:46825907-46825926 Msa0854380:intron 30.0%
TCGTTAAAAAATGGTAAAGC+CGG + chr5_4:46826234-46826253 None:intergenic 30.0%
TGAGTTTATTGTTCACTGTA+GGG - chr5_4:46826328-46826347 Msa0854380:intron 30.0%
ATTGTAGTAAGCTTGCATTA+AGG + chr5_4:46826466-46826485 None:intergenic 30.0%
TTAATGCAAGCTTACTACAA+TGG - chr5_4:46826465-46826484 Msa0854380:intron 30.0%
CTGCAAAACAATTTGAACAT+TGG + chr5_4:46826619-46826638 None:intergenic 30.0%
!! CAATGTTCAAATTGTTTTGC+AGG - chr5_4:46826617-46826636 Msa0854380:intron 30.0%
!!! GGGTTCCATTTTTTTATAGT+TGG - chr5_4:46826684-46826703 Msa0854380:intron 30.0%
!! TTTATAGTTGGTTCAGGTTT+TGG - chr5_4:46826696-46826715 Msa0854380:intron 30.0%
ATGCATTATACCTGGATTAT+CGG + chr5_4:46826829-46826848 None:intergenic 30.0%
TAAAACACTGACACAAACAT+CGG + chr5_4:46826985-46827004 None:intergenic 30.0%
! TGTTTGTGTCAGTGTTTTAT+AGG - chr5_4:46826986-46827005 Msa0854380:intron 30.0%
!! ATGTTTTTAAATCATGGTCG+CGG - chr5_4:46827017-46827036 Msa0854380:intron 30.0%
ATTATGCAAGAGAGAGATAT+CGG + chr5_4:46827046-46827065 None:intergenic 30.0%
TGAATTCATTGTTGTGAATC+AGG - chr5_4:46827115-46827134 Msa0854380:intron 30.0%
ATTGTTGTGAATCAGGAATT+TGG - chr5_4:46827122-46827141 Msa0854380:intron 30.0%
ACATAGATTCACATCTCAAT+TGG - chr5_4:46827158-46827177 Msa0854380:intron 30.0%
CATAGATTCACATCTCAATT+GGG - chr5_4:46827159-46827178 Msa0854380:intron 30.0%
ATAGATTCACATCTCAATTG+GGG - chr5_4:46827160-46827179 Msa0854380:intron 30.0%
AATTGACCTTGGTACAATTA+TGG + chr5_4:46827384-46827403 None:intergenic 30.0%
ATAATTGTACCAAGGTCAAT+TGG - chr5_4:46827383-46827402 Msa0854380:CDS 30.0%
TAATTGTACCAAGGTCAATT+GGG - chr5_4:46827384-46827403 Msa0854380:CDS 30.0%
TCAGGAACATAGTGAATGTT+TGG + chr5_4:46824774-46824793 None:intergenic 35.0%
AGACACATAAGAAGATTGTC+AGG + chr5_4:46824792-46824811 None:intergenic 35.0%
TTAGGATGTTGAGAAATCCA+TGG - chr5_4:46824831-46824850 Msa0854380:intron 35.0%
TAGGATGTTGAGAAATCCAT+GGG - chr5_4:46824832-46824851 Msa0854380:intron 35.0%
AAAACCAAGAAGGAACACTA+TGG - chr5_4:46824927-46824946 Msa0854380:intron 35.0%
TGAAGATTACCAAGAAGAAC+GGG + chr5_4:46825058-46825077 None:intergenic 35.0%
TTTGCAGTAACAATCTCATG+CGG - chr5_4:46825148-46825167 Msa0854380:CDS 35.0%
!! TCCGAATTTCGATTTGGATT+TGG - chr5_4:46825218-46825237 Msa0854380:CDS 35.0%
GGCCATTGATAAAGATTGAA+TGG + chr5_4:46825287-46825306 None:intergenic 35.0%
! TTTTATGATGCATAGGGGAA+TGG - chr5_4:46825514-46825533 Msa0854380:CDS 35.0%
ATGGTTTGATAGAGATCCAA+TGG - chr5_4:46825533-46825552 Msa0854380:CDS 35.0%
TTAAGACAAACACAGTTCAC+AGG - chr5_4:46825561-46825580 Msa0854380:CDS 35.0%
TATGCAACAGATACATTTGG+AGG + chr5_4:46825591-46825610 None:intergenic 35.0%
GTGTATGCAACAGATACATT+TGG + chr5_4:46825594-46825613 None:intergenic 35.0%
!! ACATCGTTTTAAATTGCAGC+TGG - chr5_4:46825692-46825711 Msa0854380:CDS 35.0%
TGTCTGCAACCGTAATATAA+AGG + chr5_4:46825810-46825829 None:intergenic 35.0%
GTGAGTTTATTGTTCACTGT+AGG - chr5_4:46826327-46826346 Msa0854380:intron 35.0%
TTATTGTTCACTGTAGGGTT+AGG - chr5_4:46826333-46826352 Msa0854380:intron 35.0%
TGCATTAAGGAAGTTGTTCT+AGG + chr5_4:46826453-46826472 None:intergenic 35.0%
AAATCTGTGGTAAAAACACC+AGG + chr5_4:46826495-46826514 None:intergenic 35.0%
GTGTAATTGAACTGTATAGG+AGG + chr5_4:46826528-46826547 None:intergenic 35.0%
CCTGTGTAATTGAACTGTAT+AGG + chr5_4:46826531-46826550 None:intergenic 35.0%
CCTATACAGTTCAATTACAC+AGG - chr5_4:46826528-46826547 Msa0854380:intron 35.0%
ATTACACAGGAAATGTTCCT+AGG - chr5_4:46826541-46826560 Msa0854380:intron 35.0%
TTACACAGGAAATGTTCCTA+GGG - chr5_4:46826542-46826561 Msa0854380:intron 35.0%
! AACAACTTGGTTCCTTTTCT+AGG + chr5_4:46826579-46826598 None:intergenic 35.0%
! ACAGCACTTTTGGTAGAAAA+TGG - chr5_4:46827190-46827209 Msa0854380:intron 35.0%
! CTTTTGGTAGAAAATGGAGT+TGG - chr5_4:46827196-46827215 Msa0854380:intron 35.0%
!! TTTTAGCATTGAGGTAGATC+TGG + chr5_4:46827250-46827269 None:intergenic 35.0%
TTCAAACTGCAACAGTGAAG+AGG - chr5_4:46824546-46824565 Msa0854380:CDS 40.0%
GTGATCCAAGTAACAAATGC+TGG - chr5_4:46824650-46824669 Msa0854380:CDS 40.0%
! AAGGTCCAGCATTTGTTACT+TGG + chr5_4:46824658-46824677 None:intergenic 40.0%
CTTATGTGTCTTTGTGCAAC+AGG - chr5_4:46824801-46824820 Msa0854380:intron 40.0%
GGACATTGTGTCACATAACT+AGG + chr5_4:46824866-46824885 None:intergenic 40.0%
AATGAAAGCTCCATAGACAG+TGG + chr5_4:46824981-46825000 None:intergenic 40.0%
! GGATAAGCAGAACCCATTTT+TGG + chr5_4:46825010-46825029 None:intergenic 40.0%
! TCTCTAGTTGGCTTAGAGAA+AGG + chr5_4:46825031-46825050 None:intergenic 40.0%
AGAACGGGAAATTCTCTAGT+TGG + chr5_4:46825043-46825062 None:intergenic 40.0%
AGAGAATTTCCCGTTCTTCT+TGG - chr5_4:46825046-46825065 Msa0854380:CDS 40.0%
AATCTTGATCCAATCGACCA+TGG + chr5_4:46825192-46825211 None:intergenic 40.0%
ATGGTCGATTGGATCAAGAT+TGG - chr5_4:46825191-46825210 Msa0854380:CDS 40.0%
TCGATTGGATCAAGATTGGA+CGG - chr5_4:46825195-46825214 Msa0854380:CDS 40.0%
GTTTGTCTTAAGAGAGCCAT+TGG + chr5_4:46825552-46825571 None:intergenic 40.0%
TCTGTTGCATACACCATGAA+CGG - chr5_4:46825600-46825619 Msa0854380:CDS 40.0%
GAACATCTATAGAGATCTCC+TGG + chr5_4:46825630-46825649 None:intergenic 40.0%
GAATGATTTCAAACCTTGGC+TGG + chr5_4:46825652-46825671 None:intergenic 40.0%
TAGCAACAACAGTCATTCTG+TGG + chr5_4:46825999-46826018 None:intergenic 40.0%
CAGAATGACTGTTGTTGCTA+CGG - chr5_4:46825999-46826018 Msa0854380:intron 40.0%
TATCATGAGGACTCTAGTGT+TGG + chr5_4:46826046-46826065 None:intergenic 40.0%
AACACTAGAGTCCTCATGAT+AGG - chr5_4:46826045-46826064 Msa0854380:intron 40.0%
! AGGACATTGATTGTTTGACC+TGG + chr5_4:46826072-46826091 None:intergenic 40.0%
GTTGTCAAATGCAGCATTCA+TGG + chr5_4:46826154-46826173 None:intergenic 40.0%
AATGGTAAAGCCGGCAAAAT+AGG + chr5_4:46826225-46826244 None:intergenic 40.0%
GCATTCACATCAAGGATTAG+AGG - chr5_4:46826270-46826289 Msa0854380:intron 40.0%
GCACAAATCCTAATAGTCCA+AGG - chr5_4:46826367-46826386 Msa0854380:intron 40.0%
GCTGCAAATCTTGTTCCATT+TGG + chr5_4:46826402-46826421 None:intergenic 40.0%
TTGAACTGTATAGGAGGAAC+AGG + chr5_4:46826522-46826541 None:intergenic 40.0%
TACACAGGAAATGTTCCTAG+GGG - chr5_4:46826543-46826562 Msa0854380:intron 40.0%
ATCACCCTATGCATGTTCAT+GGG - chr5_4:46826664-46826683 Msa0854380:intron 40.0%
GTTCCAATAGTATTCCTCAC+AGG + chr5_4:46826771-46826790 None:intergenic 40.0%
AATACTATTGGAACACCTCC+TGG - chr5_4:46826777-46826796 Msa0854380:CDS 40.0%
ATTATCGGCCTTGAAACGAA+TGG + chr5_4:46826814-46826833 None:intergenic 40.0%
TTCACATCTCAATTGGGGTT+TGG - chr5_4:46827165-46827184 Msa0854380:intron 40.0%
! GAGGTATCACTGACTGTAAT+GGG + chr5_4:46827222-46827241 None:intergenic 40.0%
CAAGGTCCATAATTGTACCA+AGG - chr5_4:46827375-46827394 Msa0854380:CDS 40.0%
CAAGTAATCCCAATTGACCT+TGG + chr5_4:46827395-46827414 None:intergenic 40.0%
! TGTTTCATTTGCTGCAGCAG+AGG - chr5_4:46824414-46824433 Msa0854380:three_prime_UTR 45.0%
CGAAGGATACTCACCGTAAA+TGG - chr5_4:46824581-46824600 Msa0854380:CDS 45.0%
ACCGTAAATGGACAGTTTCC+TGG - chr5_4:46824593-46824612 Msa0854380:CDS 45.0%
GCCAGGAAACTGTCCATTTA+CGG + chr5_4:46824597-46824616 None:intergenic 45.0%
CAGTGGATGGAGATGTTGTA+AGG + chr5_4:46824677-46824696 None:intergenic 45.0%
CTTACAACATCTCCATCCAC+TGG - chr5_4:46824675-46824694 Msa0854380:intron 45.0%
CGATGATAGTTACCAGTGGA+TGG + chr5_4:46824690-46824709 None:intergenic 45.0%
GTGACGATGATAGTTACCAG+TGG + chr5_4:46824694-46824713 None:intergenic 45.0%
ATCGTCACTCGTCCTCATTA+TGG - chr5_4:46824706-46824725 Msa0854380:intron 45.0%
TGTCTTTGTGCAACAGGCAT+GGG - chr5_4:46824807-46824826 Msa0854380:intron 45.0%
TTGAGAAATCCATGGGCAGA+TGG - chr5_4:46824839-46824858 Msa0854380:intron 45.0%
TGAGAAATCCATGGGCAGAT+GGG - chr5_4:46824840-46824859 Msa0854380:intron 45.0%
ACACAATGTCCAATCCAACC+AGG - chr5_4:46824875-46824894 Msa0854380:intron 45.0%
TAACTTCCTCCTGGTTGGAT+TGG + chr5_4:46824887-46824906 None:intergenic 45.0%
ATGTGTAACTTCCTCCTGGT+TGG + chr5_4:46824892-46824911 None:intergenic 45.0%
ACCAAGAAGGAACACTATGG+TGG - chr5_4:46824930-46824949 Msa0854380:intron 45.0%
TTCCTAAGAGCCACTGTCTA+TGG - chr5_4:46824968-46824987 Msa0854380:intron 45.0%
CTCTATAGATGTTCCAGCCA+AGG - chr5_4:46825636-46825655 Msa0854380:CDS 45.0%
! ATGAGGACTCTAGTGTTGGA+AGG + chr5_4:46826042-46826061 None:intergenic 45.0%
TTTGACCTGGTCCTATCATG+AGG + chr5_4:46826059-46826078 None:intergenic 45.0%
GTCAAATGCAGCATTCATGG+CGG + chr5_4:46826151-46826170 None:intergenic 45.0%
! GTCTCGAAGGTGGTCTATTT+TGG + chr5_4:46826203-46826222 None:intergenic 45.0%
! ACCTTCGAGACCTATTTTGC+CGG - chr5_4:46826212-46826231 Msa0854380:CDS 45.0%
! GTGGCCGTGTCGTTAAAAAA+TGG + chr5_4:46826243-46826262 None:intergenic 45.0%
TGATGTGAATGCAGTTGCAG+TGG + chr5_4:46826262-46826281 None:intergenic 45.0%
CTGCAACTGCATTCACATCA+AGG - chr5_4:46826262-46826281 Msa0854380:intron 45.0%
CCTTGACACCTTGGACTATT+AGG + chr5_4:46826378-46826397 None:intergenic 45.0%
! CCTAATAGTCCAAGGTGTCA+AGG - chr5_4:46826375-46826394 Msa0854380:intron 45.0%
GCTTACTACAATGGTGTTCC+TGG - chr5_4:46826474-46826493 Msa0854380:intron 45.0%
AGGAACAGGAGGAAAATCTG+TGG + chr5_4:46826508-46826527 None:intergenic 45.0%
AACTGTATAGGAGGAACAGG+AGG + chr5_4:46826519-46826538 None:intergenic 45.0%
GAAATGTTCCTAGGGGTTTG+TGG - chr5_4:46826550-46826569 Msa0854380:intron 45.0%
GGTTTGTGGACACCTAGAAA+AGG - chr5_4:46826564-46826583 Msa0854380:intron 45.0%
GATCACCCTATGCATGTTCA+TGG - chr5_4:46826663-46826682 Msa0854380:intron 45.0%
GGAACCCATGAACATGCATA+GGG + chr5_4:46826671-46826690 None:intergenic 45.0%
TGGAACCCATGAACATGCAT+AGG + chr5_4:46826672-46826691 None:intergenic 45.0%
AACGTAGCAGGATCAGTTCT+TGG + chr5_4:46826732-46826751 None:intergenic 45.0%
CCAATAGTATTCCTCACAGG+TGG + chr5_4:46826768-46826787 None:intergenic 45.0%
CCACCTGTGAGGAATACTAT+TGG - chr5_4:46826765-46826784 Msa0854380:CDS 45.0%
GGTTCTATAGCTAGAGCACA+TGG + chr5_4:46826876-46826895 None:intergenic 45.0%
CTATAGAACCGATACGACAC+TGG - chr5_4:46826886-46826905 Msa0854380:CDS 45.0%
CACATATGCCAGTGTCGTAT+CGG + chr5_4:46826897-46826916 None:intergenic 45.0%
!! GGAGGTATCACTGACTGTAA+TGG + chr5_4:46827223-46827242 None:intergenic 45.0%
! TAGCATTGAGGTAGATCTGG+TGG + chr5_4:46827247-46827266 None:intergenic 45.0%
AGAGGCTGTGCAAAACACGA+AGG - chr5_4:46824564-46824583 Msa0854380:CDS 50.0%
! AGCGAGGGACGGAGATTTTA+TGG - chr5_4:46824628-46824647 Msa0854380:CDS 50.0%
GTGTCTTTGTGCAACAGGCA+TGG - chr5_4:46824806-46824825 Msa0854380:intron 50.0%
CAATGTCCAATCCAACCAGG+AGG - chr5_4:46824878-46824897 Msa0854380:intron 50.0%
CGGTATGTGTAACTTCCTCC+TGG + chr5_4:46824896-46824915 None:intergenic 50.0%
GCCACCATAGTGTTCCTTCT+TGG + chr5_4:46824934-46824953 None:intergenic 50.0%
CTCCATAGACAGTGGCTCTT+AGG + chr5_4:46824973-46824992 None:intergenic 50.0%
CATGGATGTGGCTAACTGTG+TGG + chr5_4:46825174-46825193 None:intergenic 50.0%
CACACAGTTAGCCACATCCA+TGG - chr5_4:46825172-46825191 Msa0854380:CDS 50.0%
TAGCCACATCCATGGTCGAT+TGG - chr5_4:46825180-46825199 Msa0854380:CDS 50.0%
GATCCAATCGACCATGGATG+TGG + chr5_4:46825186-46825205 None:intergenic 50.0%
GGACGGTCCGAATTTCGATT+TGG - chr5_4:46825212-46825231 Msa0854380:CDS 50.0%
CACGCAGTGAGCCAAATCAA+TGG + chr5_4:46825308-46825327 None:intergenic 50.0%
TACACCATGAACGGTCAACC+AGG - chr5_4:46825609-46825628 Msa0854380:CDS 50.0%
ATCTCCTGGTTGACCGTTCA+TGG + chr5_4:46825616-46825635 None:intergenic 50.0%
AGAGTCCTCATGATAGGACC+AGG - chr5_4:46826051-46826070 Msa0854380:intron 50.0%
ATGCAGCATTCATGGCGGTT+TGG + chr5_4:46826146-46826165 None:intergenic 50.0%
GGCAAAATAGGTCTCGAAGG+TGG + chr5_4:46826213-46826232 None:intergenic 50.0%
CCATTTGGTCCTTGACACCT+TGG + chr5_4:46826387-46826406 None:intergenic 50.0%
! CCAAGGTGTCAAGGACCAAA+TGG - chr5_4:46826384-46826403 Msa0854380:intron 50.0%
TCGACAAGGTTGAACGTAGC+AGG + chr5_4:46826744-46826763 None:intergenic 50.0%
ACTATTGGAACACCTCCTGG+TGG - chr5_4:46826780-46826799 Msa0854380:CDS 50.0%
ATGGGTCGCCATTCGTTTCA+AGG - chr5_4:46826803-46826822 Msa0854380:CDS 50.0%
CGTTTCAAGGCCGATAATCC+AGG - chr5_4:46826816-46826835 Msa0854380:CDS 50.0%
! GGGTTTGGCAACAGCACTTT+TGG - chr5_4:46827180-46827199 Msa0854380:intron 50.0%
CATTGAGGTAGATCTGGTGG+TGG + chr5_4:46827244-46827263 None:intergenic 50.0%
TGTGCAACAGGCATGGGCTT+AGG - chr5_4:46824813-46824832 Msa0854380:intron 55.0%
TAACTAGGCCCATCTGCCCA+TGG + chr5_4:46824851-46824870 None:intergenic 55.0%
CTATGGTGGCATGCTCACAC+TGG - chr5_4:46824944-46824963 Msa0854380:intron 55.0%
GTGGTTGATCGGCTGTGACA+AGG + chr5_4:46826092-46826111 None:intergenic 55.0%
! GTATCGGCCAGGTGGTTGAT+CGG + chr5_4:46826103-46826122 None:intergenic 55.0%
ACCACCTGGCCGATACTACA+TGG - chr5_4:46826107-46826126 Msa0854380:intron 55.0%
CGCGTGCTGCCATGTAGTAT+CGG + chr5_4:46826119-46826138 None:intergenic 55.0%
GCCGGCAAAATAGGTCTCGA+AGG + chr5_4:46826216-46826235 None:intergenic 55.0%
CTAGGTGTCCACAAACCCCT+AGG + chr5_4:46826561-46826580 None:intergenic 55.0%
ACCTTGTCGATCCACCTGTG+AGG - chr5_4:46826754-46826773 Msa0854380:CDS 55.0%
TCCTCACAGGTGGATCGACA+AGG + chr5_4:46826758-46826777 None:intergenic 55.0%
TTGGAACACCTCCTGGTGGA+TGG - chr5_4:46826784-46826803 Msa0854380:CDS 55.0%
! TGGAACACCTCCTGGTGGAT+GGG - chr5_4:46826785-46826804 Msa0854380:CDS 55.0%
!! TGAGGTAGATCTGGTGGTGG+AGG + chr5_4:46827241-46827260 None:intergenic 55.0%
TGGCCCAACGATCGAAGCGA+GGG - chr5_4:46824613-46824632 Msa0854380:CDS 60.0%
CGTCCCTCGCTTCGATCGTT+GGG + chr5_4:46824619-46824638 None:intergenic 60.0%
CCAACGATCGAAGCGAGGGA+CGG - chr5_4:46824617-46824636 Msa0854380:CDS 60.0%
GTCACAGCCGATCAACCACC+TGG - chr5_4:46826093-46826112 Msa0854380:intron 60.0%
!! GCCATGTAGTATCGGCCAGG+TGG + chr5_4:46826111-46826130 None:intergenic 60.0%
!! GCTGCCATGTAGTATCGGCC+AGG + chr5_4:46826114-46826133 None:intergenic 60.0%
CTCGCTTCGATCGTTGGGCC+AGG + chr5_4:46824614-46824633 None:intergenic 65.0%
CTGGCCCAACGATCGAAGCG+AGG - chr5_4:46824612-46824631 Msa0854380:CDS 65.0%
CCGTCCCTCGCTTCGATCGT+TGG + chr5_4:46824620-46824639 None:intergenic 65.0%
ATGGCGACCCATCCACCAGG+AGG + chr5_4:46826795-46826814 None:intergenic 65.0%
CGAATGGCGACCCATCCACC+AGG + chr5_4:46826798-46826817 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 46824370 46827437 46824370 ID=Msa0854380;Name=Msa0854380
chr5_4 mRNA 46824370 46827437 46824370 ID=Msa0854380-mRNA-1;Parent=Msa0854380;Name=Msa0854380-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0.16|1|0.8|0.66|6|170|506
chr5_4 exon 46824370 46824670 46824370 ID=Msa0854380-mRNA-1:exon:14839;Parent=Msa0854380-mRNA-1
chr5_4 exon 46824991 46825905 46824991 ID=Msa0854380-mRNA-1:exon:14838;Parent=Msa0854380-mRNA-1
chr5_4 exon 46826186 46826278 46826186 ID=Msa0854380-mRNA-1:exon:14837;Parent=Msa0854380-mRNA-1
chr5_4 exon 46826740 46826972 46826740 ID=Msa0854380-mRNA-1:exon:14836;Parent=Msa0854380-mRNA-1
chr5_4 exon 46827201 46827262 46827201 ID=Msa0854380-mRNA-1:exon:14835;Parent=Msa0854380-mRNA-1
chr5_4 exon 46827351 46827437 46827351 ID=Msa0854380-mRNA-1:exon:14834;Parent=Msa0854380-mRNA-1
chr5_4 CDS 46827351 46827437 46827351 ID=Msa0854380-mRNA-1:cds;Parent=Msa0854380-mRNA-1
chr5_4 CDS 46827201 46827262 46827201 ID=Msa0854380-mRNA-1:cds;Parent=Msa0854380-mRNA-1
chr5_4 CDS 46826740 46826972 46826740 ID=Msa0854380-mRNA-1:cds;Parent=Msa0854380-mRNA-1
chr5_4 CDS 46826186 46826278 46826186 ID=Msa0854380-mRNA-1:cds;Parent=Msa0854380-mRNA-1
chr5_4 CDS 46824991 46825905 46824991 ID=Msa0854380-mRNA-1:cds;Parent=Msa0854380-mRNA-1
chr5_4 CDS 46824540 46824670 46824540 ID=Msa0854380-mRNA-1:cds;Parent=Msa0854380-mRNA-1
chr5_4 three_prime_UTR 46824370 46824539 46824370 ID=Msa0854380-mRNA-1:three_prime_utr;Parent=Msa0854380-mRNA-1
Gene Sequence

>Msa0854380

ATGAAGACTATTTTATGCTACTTACTTGGCTTACTTACTATCATTGTTTCATTTGCTGCAGCAGAGGAGCATTACCATCAGTTTGTTATTCAAACTGCAACAGTGAAGAGGCTGTGCAAAACACGAAGGATACTCACCGTAAATGGACAGATGTTGAGAAATCCATGGGCAGATGGGCCTAGTTATGTGACACAATGTCCAATCCAACCAGGAGGAAGTTACACATACCGATTTACAATTCAAAACCAAGAAGGAACACTATGGTGGCATGCTCACACTGGTTTCCTAAGAGCCACTGTCTATGGAGCTTTCATTATTTATCCAAAAATGGGTTCTGCTTATCCTTTCTCTAAGCCAACTAGAGAATTTCCCGTTCTTCTTGGGGAATGGTTTGATAGAGATCCAATGGCTCTCTTAAGACAAACACAGTTCACAGGAGCACCTCCAAATGTATCTGTTGCATACACCATGAACGGAACCGTACGTTTTCAAGTATATGTCGGAGAAACAATTCTCTTAAGAATCATCAACAGTGCACTCAATCAAGAACTCTTCTTTTCAATTGCTAACCACAGAATGACTGTTGTTGCTACGGATGCTGCTTACACAAAACCTTCCAACACTAGAGTCCTCATGATAGGACCAGGTCAAACAATCAATGTCCTTGTCACAGCCGATCAACCACCTGGCCGATACTACATGGCAGCACGCGCTTACCAAACCGCCATGAATGCTGCATTTGACAACACGACGACAACTGCAATTCTTGAATACCAAAATAGACCACCTTCGAGACCTATTTTGCCGGCTTTACCATTTTTTAACGACACGGCCACTGCAACTGCATTCACATCAAGGATTAGAGGACTTTCCAAAATTAAAGTGTTTCGAAATGTTGATGTGAGTTTATTGTTCACTGTAGGGTTAGGATTAATAAACTGCACAAATCCTAATAGTCCAAGGTGTCAAGGACCAAATGGAACAAGATTTGCAGCTAGTATAAACAACAACTCTTTTGTTCTTCCTAGAACAACTTCCTTAATGCAAGCTTACTACAATGGTGTTCCTGGTGTTTTTACCACAGATTTTCCTCCTGTTCCTCCTATACAGTTCAATTACACAGGAAATGTTCCTAGGGGTTTGTGGACACCTAGAAAAGGAACCAAGTTGTTCAAGTTGAAATATGGTTCCAATGTTCAAATTGTTTTGCAGGATACTAGTATAGTAACAATTGAGGATCACCCTATGCATGTTCATGGGTTCCATTTTTTTATAGTTGGTTCAGGTTTTGGAAATTTTAATCCAAGAACTGATCCTGCTACGTTCAACCTTGTCGATCCACCTGTGAGGAATACTATTGGAACACCTCCTGGTGGATGGGTCGCCATTCGAATTTGGTTCTTGCATTGTCACATAGATTCACATCTCAATTGGGGTTTGGCAACAGCACTTTTGGTAGAAAATGGAGTTGGCCCATTACAGTCAGTGATACCTCCACCACCAGATCTACCTCAATGCTAA

Protein sequence

>Msa0854380

MKTILCYLLGLLTIIVSFAAAEEHYHQFVIQTATVKRLCKTRRILTVNGQMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGAFIIYPKMGSAYPFSKPTREFPVLLGEWFDRDPMALLRQTQFTGAPPNVSVAYTMNGTVRFQVYVGETILLRIINSALNQELFFSIANHRMTVVATDAAYTKPSNTRVLMIGPGQTINVLVTADQPPGRYYMAARAYQTAMNAAFDNTTTTAILEYQNRPPSRPILPALPFFNDTATATAFTSRIRGLSKIKVFRNVDVSLLFTVGLGLINCTNPNSPRCQGPNGTRFAASINNNSFVLPRTTSLMQAYYNGVPGVFTTDFPPVPPIQFNYTGNVPRGLWTPRKGTKLFKLKYGSNVQIVLQDTSIVTIEDHPMHVHGFHFFIVGSGFGNFNPRTDPATFNLVDPPVRNTIGTPPGGWVAIRIWFLHCHIDSHLNWGLATALLVENGVGPLQSVIPPPPDLPQC*