Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904940 | XP_013450947.1 | 97.491 | 279 | 7 | 0 | 1 | 279 | 1 | 279 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904940 | sp|Q8LGJ5|PCO2_ARATH | 58.741 | 286 | 100 | 5 | 1 | 278 | 1 | 276 | 3.07e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049670 | Msa0904940 | -0.806003 | 1.015962e-49 | -8.615850e-47 |
| Msa0625550 | Msa0904940 | -0.807380 | 5.200171e-50 | -8.615850e-47 |
| Msa0742690 | Msa0904940 | -0.803305 | 3.713583e-49 | -8.615850e-47 |
| Msa0779830 | Msa0904940 | -0.802456 | 5.562697e-49 | -8.615850e-47 |
| Msa0827560 | Msa0904940 | -0.803586 | 3.248736e-49 | -8.615850e-47 |
| Msa0192890 | Msa0904940 | 0.822137 | 2.782691e-53 | -8.615850e-47 |
| Msa0228360 | Msa0904940 | -0.811278 | 7.583906e-51 | -8.615850e-47 |
| Msa0378620 | Msa0904940 | -0.808382 | 3.183786e-50 | -8.615850e-47 |
| Msa0258280 | Msa0904940 | -0.810563 | 1.083401e-50 | -8.615850e-47 |
| Msa0313680 | Msa0904940 | 0.812835 | 3.471642e-51 | -8.615850e-47 |
| Msa0577960 | Msa0904940 | -0.805141 | 1.540391e-49 | -8.615850e-47 |
| Msa0871620 | Msa0904940 | 0.904453 | 1.208516e-79 | -8.615850e-47 |
| Msa0902340 | Msa0904940 | 0.808163 | 3.545072e-50 | -8.615850e-47 |
| Msa0904940 | Msa0936950 | 0.921928 | 1.903931e-88 | -8.615850e-47 |
| Msa0904940 | Msa0974250 | 0.890619 | 8.363963e-74 | -8.615850e-47 |
| Msa0904940 | Msa1071460 | -0.803890 | 2.808271e-49 | -8.615850e-47 |
| Msa0904940 | Msa1203090 | -0.809231 | 2.096178e-50 | -8.615850e-47 |
| Msa0904940 | Msa1215660 | -0.815844 | 7.505637e-52 | -8.615850e-47 |
| Msa0904940 | Msa1240240 | -0.801179 | 1.017435e-48 | -8.615850e-47 |
| Msa0904940 | Msa1319230 | -0.801322 | 9.512090e-49 | -8.615850e-47 |
| Msa0904940 | Msa1373560 | 0.807323 | 5.346206e-50 | -8.615850e-47 |
| Msa0904940 | Msa1374210 | -0.810134 | 1.340695e-50 | -8.615850e-47 |
| Msa0904940 | Msa1381720 | -0.815399 | 9.430927e-52 | -8.615850e-47 |
| Msa0904940 | Msa1402000 | 0.800776 | 1.229515e-48 | -8.615850e-47 |
| Msa0904940 | Msa1405190 | -0.805572 | 1.251317e-49 | -8.615850e-47 |
| Msa0904940 | Msa1426690 | -0.801855 | 7.393951e-49 | -8.615850e-47 |
| Msa0904940 | Msa1433060 | -0.806794 | 6.918133e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904940 | MtrunA17_Chr6g0452941 | 97.491 | 279 | 7 | 0 | 1 | 279 | 1 | 279 | 0.0 | 567 |
| Msa0904940 | MtrunA17_Chr7g0216881 | 68.198 | 283 | 81 | 3 | 1 | 279 | 1 | 278 | 4.21e-136 | 385 |
| Msa0904940 | MtrunA17_Chr6g0460971 | 47.348 | 264 | 129 | 5 | 20 | 279 | 34 | 291 | 6.90e-78 | 238 |
| Msa0904940 | MtrunA17_Chr7g0253891 | 48.855 | 262 | 123 | 7 | 20 | 276 | 23 | 278 | 8.78e-78 | 237 |
| Msa0904940 | MtrunA17_Chr2g0307681 | 44.656 | 262 | 123 | 7 | 29 | 276 | 16 | 269 | 6.20e-66 | 207 |
| Msa0904940 | MtrunA17_Chr2g0320221 | 41.767 | 249 | 115 | 7 | 41 | 276 | 5 | 236 | 1.80e-62 | 197 |
| Msa0904940 | MtrunA17_Chr4g0041281 | 42.400 | 250 | 113 | 8 | 41 | 276 | 5 | 237 | 3.88e-61 | 193 |
| Msa0904940 | MtrunA17_Chr2g0283961 | 39.608 | 255 | 123 | 9 | 38 | 276 | 1 | 240 | 3.46e-57 | 183 |
| Msa0904940 | MtrunA17_Chr5g0426531 | 39.370 | 254 | 117 | 5 | 37 | 277 | 2 | 231 | 7.23e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904940 | AT5G39890.1 | 58.741 | 286 | 100 | 5 | 1 | 278 | 1 | 276 | 3.12e-116 | 335 |
| Msa0904940 | AT5G39890.2 | 60.494 | 243 | 81 | 4 | 1 | 237 | 1 | 234 | 1.37e-100 | 294 |
| Msa0904940 | AT5G15120.1 | 58.848 | 243 | 84 | 4 | 41 | 276 | 58 | 291 | 6.23e-99 | 292 |
| Msa0904940 | AT1G18490.1 | 43.369 | 279 | 128 | 10 | 20 | 276 | 10 | 280 | 8.13e-64 | 202 |
| Msa0904940 | AT2G42670.1 | 43.089 | 246 | 119 | 6 | 41 | 276 | 5 | 239 | 3.16e-63 | 199 |
| Msa0904940 | AT2G42670.2 | 43.725 | 247 | 117 | 7 | 41 | 276 | 5 | 240 | 1.20e-62 | 197 |
| Msa0904940 | AT3G58670.2 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 5.74e-61 | 193 |
| Msa0904940 | AT3G58670.3 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 5.74e-61 | 193 |
| Msa0904940 | AT3G58670.1 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 5.74e-61 | 193 |
| Msa0904940 | AT3G58670.4 | 44.086 | 186 | 98 | 2 | 91 | 276 | 18 | 197 | 1.04e-51 | 168 |
| Msa0904940 | AT2G42670.3 | 46.341 | 164 | 80 | 3 | 114 | 276 | 16 | 172 | 3.78e-44 | 148 |
Find 83 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACAAAGTTGAAAGATTT+TGG | 0.192805 | 6_2:+2670034 | Msa0904940:five_prime_UTR |
| ATCCTAATATGCCATATTTC+AGG | 0.200898 | 6_2:+2672031 | Msa0904940:CDS |
| TAAACATTCCTTTCCTCTTC+TGG | 0.218650 | 6_2:-2673991 | None:intergenic |
| CTTTATGGAATAACAGAAAA+AGG | 0.234378 | 6_2:+2674277 | Msa0904940:three_prime_UTR |
| TTGAAAATGGTAGGAGATTC+AGG | 0.242628 | 6_2:-2672634 | None:intergenic |
| GCCCTGAAATATGGCATATT+AGG | 0.257004 | 6_2:-2672033 | None:intergenic |
| TGTGCAGTTCTTGATGTTCT+TGG | 0.289175 | 6_2:+2673242 | Msa0904940:CDS |
| GGATCCAAGTCAACATCTTC+TGG | 0.300517 | 6_2:-2672012 | None:intergenic |
| ATAACAAACTTCTATATTGA+TGG | 0.307799 | 6_2:-2674338 | None:intergenic |
| TCCTCAGGATATAAGATAGA+AGG | 0.318843 | 6_2:-2673182 | None:intergenic |
| ACTTTCTGAGGGTTTGAAAA+TGG | 0.319904 | 6_2:-2672647 | None:intergenic |
| CTGTTAGTAATTGTTTCCTT+TGG | 0.343483 | 6_2:-2670122 | None:intergenic |
| TGCACATCAAATCATATGAT+TGG | 0.370445 | 6_2:+2672596 | Msa0904940:CDS |
| TGCTAACTCTCCACAATAGT+TGG | 0.397487 | 6_2:-2674078 | None:intergenic |
| GTCTTTGCTTCCAGTGGGAC+AGG | 0.412794 | 6_2:+2670218 | Msa0904940:CDS |
| CCTCCATATTCTGATCTTGA+TGG | 0.415771 | 6_2:+2673266 | Msa0904940:CDS |
| ATTCCTTTCCTCTTCTGGTA+TGG | 0.419126 | 6_2:-2673986 | None:intergenic |
| GATGCATTTGCCCTGAAATA+TGG | 0.421163 | 6_2:-2672042 | None:intergenic |
| GTTGAGAGAGAGAAAACAGT+TGG | 0.431199 | 6_2:-2669445 | None:intergenic |
| TCTGTTATTCCATAAAGAAA+AGG | 0.448879 | 6_2:-2674271 | None:intergenic |
| CTGCCATCAAGATCAGAATA+TGG | 0.460746 | 6_2:-2673269 | None:intergenic |
| TTATGAGTGTGAGAAATTCT+CGG | 0.469187 | 6_2:+2672098 | Msa0904940:CDS |
| GAAGAAGTAGCAAAGAAGAA+GGG | 0.470798 | 6_2:-2669472 | None:intergenic |
| TTACCTGGAAAGTTGGAAAA+CGG | 0.476609 | 6_2:-2673317 | None:intergenic |
| AAGATTTAAAAGTGGAAGGA+AGG | 0.477593 | 6_2:+2674043 | Msa0904940:CDS |
| GCACATCAAATCATATGATT+GGG | 0.481019 | 6_2:+2672597 | Msa0904940:CDS |
| AGAAGAAGTAGCAAAGAAGA+AGG | 0.482084 | 6_2:-2669473 | None:intergenic |
| GTGAAGGTTGGTGAAGATTG+AGG | 0.482525 | 6_2:-2669520 | None:intergenic |
| AGAACCTTAGCTGATAGAAA+AGG | 0.486526 | 6_2:+2670080 | Msa0904940:CDS |
| GCATCTTCTTCTGACGCCGC+CGG | 0.489872 | 6_2:-2670160 | None:intergenic |
| ATTGACATTTGATATAAAAG+AGG | 0.492060 | 6_2:-2669497 | None:intergenic |
| TTATGAATGGCTACAAGAAA+AGG | 0.495196 | 6_2:+2674011 | Msa0904940:CDS |
| TGCACAAGTTGTTGTTGTTG+AGG | 0.499027 | 6_2:-2669599 | None:intergenic |
| CAAAGAGAAGTCAGAAAACC+AGG | 0.501782 | 6_2:-2669416 | None:intergenic |
| TCCTAATATGCCATATTTCA+GGG | 0.504171 | 6_2:+2672032 | Msa0904940:CDS |
| AGGAAAGGAATGTTTATGAA+TGG | 0.504362 | 6_2:+2673998 | Msa0904940:CDS |
| TGCAAGTTGCCACCATCCTC+AGG | 0.504973 | 6_2:-2673197 | None:intergenic |
| GAAAGAGAAATAGTGAAGGT+TGG | 0.505968 | 6_2:-2669532 | None:intergenic |
| ACAGCAGGTCAAGGAGGAAC+CGG | 0.506872 | 6_2:+2670141 | Msa0904940:CDS |
| AGGAATTGTCCCACCAGCTC+AGG | 0.513462 | 6_2:+2670238 | Msa0904940:CDS |
| GAATATCAAAACTTAGCCCC+TGG | 0.518117 | 6_2:+2669398 | None:intergenic |
| TGGGACAATTCCTGTCCCAC+TGG | 0.522671 | 6_2:-2670228 | None:intergenic |
| CTTGAAGATTTAAAAGTGGA+AGG | 0.530635 | 6_2:+2674039 | Msa0904940:CDS |
| AACTTATCAATGTCCTGAGC+TGG | 0.532617 | 6_2:-2670251 | None:intergenic |
| TAAGTACTACTCACTTTCTG+AGG | 0.535516 | 6_2:-2672659 | None:intergenic |
| AAGAAGTAGCAAAGAAGAAG+GGG | 0.552447 | 6_2:-2669471 | None:intergenic |
| TCTATCTTATATCCTGAGGA+TGG | 0.553467 | 6_2:+2673185 | Msa0904940:CDS |
| ATGTTGCAGGTCCTGAGTTG+AGG | 0.553715 | 6_2:+2673114 | Msa0904940:intron |
| TCTGAGGGTTTGAAAATGGT+AGG | 0.554115 | 6_2:-2672643 | None:intergenic |
| CCAACTTGAAGATTTAAAAG+TGG | 0.556946 | 6_2:+2674035 | Msa0904940:CDS |
| AAGGAAGTCTTTGCTTCCAG+TGG | 0.558469 | 6_2:+2670212 | Msa0904940:CDS |
| TTATCAATGTCCTGAGCTGG+TGG | 0.560783 | 6_2:-2670248 | None:intergenic |
| GTACAGTGGTCCAACTATTG+TGG | 0.561081 | 6_2:+2674068 | Msa0904940:CDS |
| AGGAAACAATTACTAACAGC+AGG | 0.568362 | 6_2:+2670126 | Msa0904940:CDS |
| CCTCAGGATATAAGATAGAA+GGG | 0.572370 | 6_2:-2673181 | None:intergenic |
| AAAACCAGAAGATGTTGACT+TGG | 0.573524 | 6_2:+2672008 | Msa0904940:CDS |
| AAGTACTACTCACTTTCTGA+GGG | 0.577095 | 6_2:-2672658 | None:intergenic |
| TATAAGATAGAAGGGTTGCA+AGG | 0.578009 | 6_2:-2673173 | None:intergenic |
| GGGCAAATGCATCTCACAGA+AGG | 0.579084 | 6_2:+2672052 | Msa0904940:CDS |
| CTCAGGACATTGATAAGTTG+CGG | 0.580370 | 6_2:+2670255 | Msa0904940:CDS |
| CCCTTCTATCTTATATCCTG+AGG | 0.585726 | 6_2:+2673181 | Msa0904940:CDS |
| AGGACTATCCATACCAGAAG+AGG | 0.597067 | 6_2:+2673978 | Msa0904940:CDS |
| AGGAAGTCTTTGCTTCCAGT+GGG | 0.601089 | 6_2:+2670213 | Msa0904940:CDS |
| TATCCATACCAGAAGAGGAA+AGG | 0.605568 | 6_2:+2673983 | Msa0904940:CDS |
| CATCAAATCATATGATTGGG+TGG | 0.621774 | 6_2:+2672600 | Msa0904940:CDS |
| TGTAGAGGAATAACACCAGA+AGG | 0.622496 | 6_2:-2672526 | None:intergenic |
| ATCTTATATCCTGAGGATGG+TGG | 0.627492 | 6_2:+2673188 | Msa0904940:CDS |
| GTTGAGGTTAGCAAAAGTGA+AGG | 0.633387 | 6_2:+2673130 | Msa0904940:CDS |
| CAATTACTAACAGCAGGTCA+AGG | 0.634321 | 6_2:+2670132 | Msa0904940:CDS |
| GCGTCAGAAGAAGATGCCGC+CGG | 0.640523 | 6_2:+2670166 | Msa0904940:CDS |
| TTTGGAAAGAGAAATAGTGA+AGG | 0.642083 | 6_2:-2669536 | None:intergenic |
| ATTCCAGGGTGATTATGTAG+AGG | 0.643712 | 6_2:-2672541 | None:intergenic |
| TTGATGGCTAAAATTAAACA+TGG | 0.676097 | 6_2:-2674322 | None:intergenic |
| AAAGAGAAGTCAGAAAACCA+GGG | 0.676901 | 6_2:-2669415 | None:intergenic |
| TATCAATGTCCTGAGCTGGT+GGG | 0.678123 | 6_2:-2670247 | None:intergenic |
| GCAGGTCAAGGAGGAACCGG+CGG | 0.678543 | 6_2:+2670144 | Msa0904940:CDS |
| CCATCAAGATCAGAATATGG+AGG | 0.684165 | 6_2:-2673266 | None:intergenic |
| ATTCCTCTACATAATCACCC+TGG | 0.691462 | 6_2:+2672538 | Msa0904940:CDS |
| AAGAGAAGTCAGAAAACCAG+GGG | 0.695114 | 6_2:-2669414 | None:intergenic |
| AGAGGAATAACACCAGAAGG+TGG | 0.695453 | 6_2:-2672523 | None:intergenic |
| TTACTAACAGCAGGTCAAGG+AGG | 0.728299 | 6_2:+2670135 | Msa0904940:CDS |
| GTGGAAGGAAGGATGTACAG+TGG | 0.744882 | 6_2:+2674054 | Msa0904940:CDS |
| AAAATGGTAGGAGATTCAGG+AGG | 0.774453 | 6_2:-2672631 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAAATAATAAGAATG+AGG | - | chr6_2:2669679-2669698 | None:intergenic | 10.0% |
| !!! | ATTTATTTTCTCAATTATTT+TGG | + | chr6_2:2670477-2670496 | Msa0904940:intron | 10.0% |
| !!! | TTATTGTTATTAATTGTTTT+CGG | + | chr6_2:2670536-2670555 | Msa0904940:intron | 10.0% |
| !! | AAAAATCTTAAAATATACAA+AGG | - | chr6_2:2672824-2672843 | None:intergenic | 10.0% |
| !! | ATGAAAAATGTTGTAAAATT+TGG | - | chr6_2:2669557-2669576 | None:intergenic | 15.0% |
| !!! | TTTTGTTTACATTGTTTTTT+TGG | - | chr6_2:2669647-2669666 | None:intergenic | 15.0% |
| !!! | TCTGTTTTTGAATTTTTTAT+GGG | + | chr6_2:2669775-2669794 | Msa0904940:intron | 15.0% |
| !!! | TTCAAATTTGAATTGTTTTT+TGG | + | chr6_2:2669809-2669828 | Msa0904940:intron | 15.0% |
| !! | AAACTTAATTTATGCTAAAA+GGG | - | chr6_2:2669838-2669857 | None:intergenic | 15.0% |
| !! | TAAACTTAATTTATGCTAAA+AGG | - | chr6_2:2669839-2669858 | None:intergenic | 15.0% |
| !!! | ATTGTTTTTATGTTGATAAT+TGG | + | chr6_2:2670328-2670347 | Msa0904940:intron | 15.0% |
| !!! | TATTGTTATTAATTGTTTTC+GGG | + | chr6_2:2670537-2670556 | Msa0904940:intron | 15.0% |
| !! | AAAATGATAACATCAAAAAT+TGG | - | chr6_2:2670915-2670934 | None:intergenic | 15.0% |
| !! | TTTATATATTATATATTCCG+AGG | + | chr6_2:2671074-2671093 | Msa0904940:intron | 15.0% |
| !! | TATGATGTTTAATAAGAAAA+TGG | + | chr6_2:2672150-2672169 | Msa0904940:intron | 15.0% |
| !!! | ATAGCAATTTTTTCTATTTT+AGG | - | chr6_2:2672784-2672803 | None:intergenic | 15.0% |
| !!! | TGAACTATAGTTTTAAATTA+GGG | - | chr6_2:2673042-2673061 | None:intergenic | 15.0% |
| !!! | ATGAACTATAGTTTTAAATT+AGG | - | chr6_2:2673043-2673062 | None:intergenic | 15.0% |
| !! | ATATTATTAAAGTTTATGTG+GGG | - | chr6_2:2673924-2673943 | None:intergenic | 15.0% |
| !! | GATATTATTAAAGTTTATGT+GGG | - | chr6_2:2673925-2673944 | None:intergenic | 15.0% |
| !! | AGATATTATTAAAGTTTATG+TGG | - | chr6_2:2673926-2673945 | None:intergenic | 15.0% |
| !! | ATTGACATTTGATATAAAAG+AGG | - | chr6_2:2669500-2669519 | None:intergenic | 20.0% |
| !! | CATAAAAAATTCAAAAACAG+AGG | - | chr6_2:2669776-2669795 | None:intergenic | 20.0% |
| !!! | CTCTGTTTTTGAATTTTTTA+TGG | + | chr6_2:2669774-2669793 | Msa0904940:intron | 20.0% |
| !!! | CTGTTTTTGAATTTTTTATG+GGG | + | chr6_2:2669776-2669795 | Msa0904940:intron | 20.0% |
| !! | CATAAAAATTATCAAAACAG+AGG | - | chr6_2:2669929-2669948 | None:intergenic | 20.0% |
| !!! | CTGTTTTGATAATTTTTATG+AGG | + | chr6_2:2669929-2669948 | Msa0904940:intron | 20.0% |
| !!! | ATTGTTATTAATTGTTTTCG+GGG | + | chr6_2:2670538-2670557 | Msa0904940:intron | 20.0% |
| !!! | ATTTTACCATGAATACTATT+GGG | + | chr6_2:2670930-2670949 | Msa0904940:intron | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | + | chr6_2:2671184-2671203 | Msa0904940:intron | 20.0% |
| !! | TTATTCAATGAACCTAAAAA+AGG | + | chr6_2:2671258-2671277 | Msa0904940:intron | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | - | chr6_2:2671184-2671203 | None:intergenic | 20.0% |
| !! | TGGATATGAAACATAAAAAA+AGG | - | chr6_2:2671446-2671465 | None:intergenic | 20.0% |
| !! | CAAATGTCAATAAATAACAA+TGG | + | chr6_2:2671586-2671605 | Msa0904940:intron | 20.0% |
| !!! | TGACATTTTTGTTTTTTGTA+TGG | + | chr6_2:2671635-2671654 | Msa0904940:intron | 20.0% |
| !! | ACACATTAAAAATGTGTATA+AGG | - | chr6_2:2672478-2672497 | None:intergenic | 20.0% |
| !! | GTATTTAATATGTCTAACTT+AGG | - | chr6_2:2672750-2672769 | None:intergenic | 20.0% |
| !!! | ATTTTAGAGAAAATTTTACC+TGG | - | chr6_2:2673335-2673354 | None:intergenic | 20.0% |
| !! | TGATTCAAACTTTACAAAAT+TGG | + | chr6_2:2673538-2673557 | Msa0904940:intron | 20.0% |
| !! | GATTCAAACTTTACAAAATT+GGG | + | chr6_2:2673539-2673558 | Msa0904940:intron | 20.0% |
| !!! | TTTGTCTTTTTTTTTCTGTA+GGG | - | chr6_2:2674171-2674190 | None:intergenic | 20.0% |
| !!! | TTTTGTCTTTTTTTTTCTGT+AGG | - | chr6_2:2674172-2674191 | None:intergenic | 20.0% |
| !!! | CTTTATTATTGTCCTTTTTT+TGG | + | chr6_2:2674233-2674252 | Msa0904940:three_prime_UTR | 20.0% |
| !! | AGAAAAAAAACACCAAAAAA+AGG | - | chr6_2:2674248-2674267 | None:intergenic | 20.0% |
| !! | ATAACAAACTTCTATATTGA+TGG | - | chr6_2:2674341-2674360 | None:intergenic | 20.0% |
| !!! | ATTGCATTGAATTTTTCAGT+TGG | + | chr6_2:2669858-2669877 | Msa0904940:intron | 25.0% |
| ! | AAACTTAATTTCAGCTCAAA+GGG | - | chr6_2:2669991-2670010 | None:intergenic | 25.0% |
| !! | TGAACAAAGTTGAAAGATTT+TGG | + | chr6_2:2670034-2670053 | Msa0904940:five_prime_UTR | 25.0% |
| !!! | AAGTTGAAAGATTTTGGTTT+TGG | + | chr6_2:2670040-2670059 | Msa0904940:five_prime_UTR | 25.0% |
| !!! | ATTTTGGTTTTGGTTTGAAT+GGG | + | chr6_2:2670050-2670069 | Msa0904940:exon | 25.0% |
| !!! | TTATGTTGATAATTGGCAAT+AGG | + | chr6_2:2670335-2670354 | Msa0904940:intron | 25.0% |
| ! | TCAATGATATTTCAGATTGA+AGG | + | chr6_2:2670388-2670407 | Msa0904940:intron | 25.0% |
| !!! | ATTTTTTGTGACAACTCATA+AGG | + | chr6_2:2670802-2670821 | Msa0904940:intron | 25.0% |
| !! | CATTTTACCATGAATACTAT+TGG | + | chr6_2:2670929-2670948 | Msa0904940:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | - | chr6_2:2671283-2671302 | None:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr6_2:2671283-2671302 | Msa0904940:intron | 25.0% |
| ! | TTAGAAGTCAAATGAATGAA+TGG | - | chr6_2:2671466-2671485 | None:intergenic | 25.0% |
| ! | GATTTACTTTGTGGTTAATT+AGG | + | chr6_2:2671490-2671509 | Msa0904940:intron | 25.0% |
| ! | GCTATATTAGTTAGTAATGA+AGG | + | chr6_2:2671532-2671551 | Msa0904940:intron | 25.0% |
| !! | TAATGAGTTTTTGTATTCCT+AGG | - | chr6_2:2671730-2671749 | None:intergenic | 25.0% |
| !! | TACAAAAAAATCACTAGCTT+AGG | - | chr6_2:2671827-2671846 | None:intergenic | 25.0% |
| ! | TATGAAACACCAATTATTAC+TGG | + | chr6_2:2671854-2671873 | Msa0904940:intron | 25.0% |
| !! | ATGTGCAAGTATGTAATTTT+TGG | - | chr6_2:2672078-2672097 | None:intergenic | 25.0% |
| ! | ATCATATAAACAGTTTAGAC+TGG | - | chr6_2:2672136-2672155 | None:intergenic | 25.0% |
| !! | TATTTTGTGAACTGTTTGAT+CGG | - | chr6_2:2672364-2672383 | None:intergenic | 25.0% |
| !! | TTTTTAATGTGTTGTACAGA+TGG | + | chr6_2:2672486-2672505 | Msa0904940:intron | 25.0% |
| !! | TTTTAATGTGTTGTACAGAT+GGG | + | chr6_2:2672487-2672506 | Msa0904940:intron | 25.0% |
| !!! | GTTTTTAGTAAGCTACTTTT+TGG | + | chr6_2:2672568-2672587 | Msa0904940:CDS | 25.0% |
| ! | GCTGCAATATTTAATGTTAA+GGG | + | chr6_2:2672978-2672997 | Msa0904940:intron | 25.0% |
| ! | TTTAATGTTAAGGGAAAGTA+CGG | + | chr6_2:2672987-2673006 | Msa0904940:intron | 25.0% |
| !! | AATGCTAATTATTTTCAGCT+AGG | - | chr6_2:2673085-2673104 | None:intergenic | 25.0% |
| ! | CATTTATATTCTAATGTTGC+AGG | + | chr6_2:2673101-2673120 | Msa0904940:intron | 25.0% |
| !!! | AGAAAGGCATAACTATTTTA+AGG | - | chr6_2:2673380-2673399 | None:intergenic | 25.0% |
| !! | ATTTTACGATCAAGATCATA+TGG | + | chr6_2:2673702-2673721 | Msa0904940:intron | 25.0% |
| !! | AGAAGTAACTACTTAGATTT+TGG | + | chr6_2:2673728-2673747 | Msa0904940:intron | 25.0% |
| !!! | AAATATTGATAGTGACATGT+GGG | - | chr6_2:2673887-2673906 | None:intergenic | 25.0% |
| !! | ATCAATATTTCTATTTGTGC+CGG | + | chr6_2:2673897-2673916 | Msa0904940:intron | 25.0% |
| !! | TTTTCTTCTCCTTTTCTTTA+TGG | + | chr6_2:2674262-2674281 | Msa0904940:three_prime_UTR | 25.0% |
| ! | TCTGTTATTCCATAAAGAAA+AGG | - | chr6_2:2674274-2674293 | None:intergenic | 25.0% |
| ! | CTTTATGGAATAACAGAAAA+AGG | + | chr6_2:2674277-2674296 | Msa0904940:three_prime_UTR | 25.0% |
| !! | TTGATGGCTAAAATTAAACA+TGG | - | chr6_2:2674325-2674344 | None:intergenic | 25.0% |
| TTTGGAAAGAGAAATAGTGA+AGG | - | chr6_2:2669539-2669558 | None:intergenic | 30.0% | |
| !!! | GATGTTTTTTGATGAGGTTA+AGG | - | chr6_2:2669580-2669599 | None:intergenic | 30.0% |
| AACCAAAAAAAACATCCTAG+TGG | + | chr6_2:2669621-2669640 | Msa0904940:five_prime_UTR | 30.0% | |
| ATAAAAACAGAGGAAAACAG+AGG | - | chr6_2:2669746-2669765 | None:intergenic | 30.0% | |
| AGGAGTAGTAATAAAAACAG+AGG | - | chr6_2:2669756-2669775 | None:intergenic | 30.0% | |
| TTATCAAAACAGAGGAAACA+GGG | - | chr6_2:2669921-2669940 | None:intergenic | 30.0% | |
| ATTATCAAAACAGAGGAAAC+AGG | - | chr6_2:2669922-2669941 | None:intergenic | 30.0% | |
| CAAACTTAATTTCAGCTCAA+AGG | - | chr6_2:2669992-2670011 | None:intergenic | 30.0% | |
| !! | GATGCATTGAATTTTTCAGT+TGG | + | chr6_2:2670011-2670030 | Msa0904940:intron | 30.0% |
| !!! | GATTTTGGTTTTGGTTTGAA+TGG | + | chr6_2:2670049-2670068 | Msa0904940:exon | 30.0% |
| !!! | TTTTGGTTTTGGTTTGAATG+GGG | + | chr6_2:2670051-2670070 | Msa0904940:exon | 30.0% |
| ! | AGATTTTTGTGAATTGCCAA+AGG | + | chr6_2:2670106-2670125 | Msa0904940:CDS | 30.0% |
| CTGTTAGTAATTGTTTCCTT+TGG | - | chr6_2:2670125-2670144 | None:intergenic | 30.0% | |
| CTACTCAATGAACCTAAAAA+AGG | - | chr6_2:2671199-2671218 | None:intergenic | 30.0% | |
| CATTGAGTAGTTAATGTATC+TGG | + | chr6_2:2671209-2671228 | Msa0904940:intron | 30.0% | |
| AAACTAAAATATACTCCCTC+CGG | - | chr6_2:2671305-2671324 | None:intergenic | 30.0% | |
| ! | CATTCATTTGACTTCTAATG+TGG | + | chr6_2:2671468-2671487 | Msa0904940:intron | 30.0% |
| TCTAATGTGGATTTACTTTG+TGG | + | chr6_2:2671481-2671500 | Msa0904940:intron | 30.0% | |
| GTGGTTAATTAGGACTAATT+AGG | + | chr6_2:2671500-2671519 | Msa0904940:intron | 30.0% | |
| AGGTTTAAATCCCTATTAGT+AGG | + | chr6_2:2671552-2671571 | Msa0904940:intron | 30.0% | |
| AAGTTCTATGCCTACTAATA+GGG | - | chr6_2:2671565-2671584 | None:intergenic | 30.0% | |
| AAAGTTCTATGCCTACTAAT+AGG | - | chr6_2:2671566-2671585 | None:intergenic | 30.0% | |
| ATTGTCCATAAAGACTAAAG+AGG | + | chr6_2:2671674-2671693 | Msa0904940:intron | 30.0% | |
| ! | TACTTCCTCTTTAGTCTTTA+TGG | - | chr6_2:2671682-2671701 | None:intergenic | 30.0% |
| ! | TTTTGTATTCCTAGGCTTAT+AGG | - | chr6_2:2671722-2671741 | None:intergenic | 30.0% |
| AGCATAGAAGAATATCCTAT+GGG | - | chr6_2:2671794-2671813 | None:intergenic | 30.0% | |
| AAGCATAGAAGAATATCCTA+TGG | - | chr6_2:2671795-2671814 | None:intergenic | 30.0% | |
| ATCCTAATATGCCATATTTC+AGG | + | chr6_2:2672031-2672050 | Msa0904940:CDS | 30.0% | |
| TCCTAATATGCCATATTTCA+GGG | + | chr6_2:2672032-2672051 | Msa0904940:CDS | 30.0% | |
| TTATGAGTGTGAGAAATTCT+CGG | + | chr6_2:2672098-2672117 | Msa0904940:CDS | 30.0% | |
| AATTCATGCAGTCAATACAA+CGG | - | chr6_2:2672311-2672330 | None:intergenic | 30.0% | |
| ATTCATAATATCTCGACTCT+AGG | + | chr6_2:2672328-2672347 | Msa0904940:intron | 30.0% | |
| TTCATAATATCTCGACTCTA+GGG | + | chr6_2:2672329-2672348 | Msa0904940:intron | 30.0% | |
| TACTAAAAACTGTCATTCCA+GGG | - | chr6_2:2672558-2672577 | None:intergenic | 30.0% | |
| TTACTAAAAACTGTCATTCC+AGG | - | chr6_2:2672559-2672578 | None:intergenic | 30.0% | |
| TGCACATCAAATCATATGAT+TGG | + | chr6_2:2672596-2672615 | Msa0904940:CDS | 30.0% | |
| GCACATCAAATCATATGATT+GGG | + | chr6_2:2672597-2672616 | Msa0904940:CDS | 30.0% | |
| CGCTGCAATATTTAATGTTA+AGG | + | chr6_2:2672977-2672996 | Msa0904940:intron | 30.0% | |
| ! | GAAAATTTTACCTGGAAAGT+TGG | - | chr6_2:2673327-2673346 | None:intergenic | 30.0% |
| TGAAGTGTATTAGTGAAGAA+AGG | - | chr6_2:2673396-2673415 | None:intergenic | 30.0% | |
| TATATCTCTTGACATATCCT+CGG | + | chr6_2:2673441-2673460 | Msa0904940:intron | 30.0% | |
| AAATATACATTGCGTGACTT+TGG | - | chr6_2:2673686-2673705 | None:intergenic | 30.0% | |
| ! | TAACTACTTAGATTTTGGAC+CGG | + | chr6_2:2673733-2673752 | Msa0904940:intron | 30.0% |
| TCAATCAAGATCAAATGACT+TGG | - | chr6_2:2673812-2673831 | None:intergenic | 30.0% | |
| !! | GAAATATTGATAGTGACATG+TGG | - | chr6_2:2673888-2673907 | None:intergenic | 30.0% |
| TCTCATGAAATTTCAGTTGA+AGG | + | chr6_2:2673958-2673977 | Msa0904940:intron | 30.0% | |
| AGGAAAGGAATGTTTATGAA+TGG | + | chr6_2:2673998-2674017 | Msa0904940:CDS | 30.0% | |
| TTATGAATGGCTACAAGAAA+AGG | + | chr6_2:2674011-2674030 | Msa0904940:CDS | 30.0% | |
| !! | CCACTTTTAAATCTTCAAGT+TGG | - | chr6_2:2674038-2674057 | None:intergenic | 30.0% |
| CCAACTTGAAGATTTAAAAG+TGG | + | chr6_2:2674035-2674054 | Msa0904940:CDS | 30.0% | |
| CTTGAAGATTTAAAAGTGGA+AGG | + | chr6_2:2674039-2674058 | Msa0904940:CDS | 30.0% | |
| AAGATTTAAAAGTGGAAGGA+AGG | + | chr6_2:2674043-2674062 | Msa0904940:CDS | 30.0% | |
| ! | CAATCTTGTAGATTTTATGC+TGG | + | chr6_2:2674206-2674225 | Msa0904940:three_prime_UTR | 30.0% |
| AAAGAGAAGTCAGAAAACCA+GGG | - | chr6_2:2669418-2669437 | None:intergenic | 35.0% | |
| AAGAAGTAGCAAAGAAGAAG+GGG | - | chr6_2:2669474-2669493 | None:intergenic | 35.0% | |
| GAAGAAGTAGCAAAGAAGAA+GGG | - | chr6_2:2669475-2669494 | None:intergenic | 35.0% | |
| AGAAGAAGTAGCAAAGAAGA+AGG | - | chr6_2:2669476-2669495 | None:intergenic | 35.0% | |
| GAAAGAGAAATAGTGAAGGT+TGG | - | chr6_2:2669535-2669554 | None:intergenic | 35.0% | |
| !!! | GTTGAGGATGTTTTTTGATG+AGG | - | chr6_2:2669586-2669605 | None:intergenic | 35.0% |
| !!! | ACATTGTTTTTTTGGCCACT+AGG | - | chr6_2:2669639-2669658 | None:intergenic | 35.0% |
| TATCAAAACAGAGGAAACAG+GGG | - | chr6_2:2669920-2669939 | None:intergenic | 35.0% | |
| AGAACCTTAGCTGATAGAAA+AGG | + | chr6_2:2670080-2670099 | Msa0904940:CDS | 35.0% | |
| ! | TCTTCCTTTTCTATCAGCTA+AGG | - | chr6_2:2670087-2670106 | None:intergenic | 35.0% |
| AGGAAACAATTACTAACAGC+AGG | + | chr6_2:2670126-2670145 | Msa0904940:CDS | 35.0% | |
| !!! | GAGACTTTTTGAGACTTGTA+AGG | + | chr6_2:2670193-2670212 | Msa0904940:CDS | 35.0% |
| !!! | TTATTTTGGTGTCTACACGT+CGG | + | chr6_2:2670491-2670510 | Msa0904940:intron | 35.0% |
| ATATGCGTCAGTATCCTTAT+TGG | + | chr6_2:2670698-2670717 | Msa0904940:intron | 35.0% | |
| CACTCATCAAACACAAGAAA+CGG | - | chr6_2:2670740-2670759 | None:intergenic | 35.0% | |
| AACTCACCCAATAGTATTCA+TGG | - | chr6_2:2670939-2670958 | None:intergenic | 35.0% | |
| TATTCCGAGGTTCTTTGATT+TGG | + | chr6_2:2671087-2671106 | Msa0904940:intron | 35.0% | |
| ATAGCCAAATCAAAGAACCT+CGG | - | chr6_2:2671094-2671113 | None:intergenic | 35.0% | |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr6_2:2671287-2671306 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr6_2:2671286-2671305 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr6_2:2671286-2671305 | Msa0904940:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr6_2:2671287-2671306 | Msa0904940:intron | 35.0% |
| ACAATTTGATGTCAAGTCCA+TGG | + | chr6_2:2671325-2671344 | Msa0904940:intron | 35.0% | |
| ! | GACTAAAGAGGAAGTAGTTT+TGG | + | chr6_2:2671686-2671705 | Msa0904940:intron | 35.0% |
| !!! | TAAAGAGGAAGTAGTTTTGG+TGG | + | chr6_2:2671689-2671708 | Msa0904940:intron | 35.0% |
| GCATAGAAGAATATCCTATG+GGG | - | chr6_2:2671793-2671812 | None:intergenic | 35.0% | |
| ACACAGACACCAGTAATAAT+TGG | - | chr6_2:2671866-2671885 | None:intergenic | 35.0% | |
| GTAAGTGGTTCATGGTTTAT+AGG | + | chr6_2:2671895-2671914 | Msa0904940:intron | 35.0% | |
| CTAGAGTTGTATACTTTGCA+TGG | - | chr6_2:2671965-2671984 | None:intergenic | 35.0% | |
| ! | AAAACCAGAAGATGTTGACT+TGG | + | chr6_2:2672008-2672027 | Msa0904940:CDS | 35.0% |
| ! | AAAATGGATTCCCTTCACTT+CGG | + | chr6_2:2672166-2672185 | Msa0904940:intron | 35.0% |
| GGTAACAGTTGGATCAATAT+CGG | - | chr6_2:2672290-2672309 | None:intergenic | 35.0% | |
| !! | ATATTTTGTTTGCCACCTTC+TGG | + | chr6_2:2672511-2672530 | Msa0904940:CDS | 35.0% |
| CATCAAATCATATGATTGGG+TGG | + | chr6_2:2672600-2672619 | Msa0904940:CDS | 35.0% | |
| TTGAAAATGGTAGGAGATTC+AGG | - | chr6_2:2672637-2672656 | None:intergenic | 35.0% | |
| ! | ACTTTCTGAGGGTTTGAAAA+TGG | - | chr6_2:2672650-2672669 | None:intergenic | 35.0% |
| AAGTACTACTCACTTTCTGA+GGG | - | chr6_2:2672661-2672680 | None:intergenic | 35.0% | |
| TAAGTACTACTCACTTTCTG+AGG | - | chr6_2:2672662-2672681 | None:intergenic | 35.0% | |
| AGTTAACGGTTGCAATGTAA+CGG | - | chr6_2:2672905-2672924 | None:intergenic | 35.0% | |
| GTACTTTCACCTGAAGTTAA+CGG | - | chr6_2:2672919-2672938 | None:intergenic | 35.0% | |
| TATAAGATAGAAGGGTTGCA+AGG | - | chr6_2:2673176-2673195 | None:intergenic | 35.0% | |
| CCTCAGGATATAAGATAGAA+GGG | - | chr6_2:2673184-2673203 | None:intergenic | 35.0% | |
| TCCTCAGGATATAAGATAGA+AGG | - | chr6_2:2673185-2673204 | None:intergenic | 35.0% | |
| TCTATCTTATATCCTGAGGA+TGG | + | chr6_2:2673185-2673204 | Msa0904940:CDS | 35.0% | |
| TTACCTGGAAAGTTGGAAAA+CGG | - | chr6_2:2673320-2673339 | None:intergenic | 35.0% | |
| ! | TTGCGTGTTTTCTTTTACTG+CGG | - | chr6_2:2673472-2673491 | None:intergenic | 35.0% |
| AGTCGTTTGATCTTATCCAA+TGG | + | chr6_2:2673585-2673604 | Msa0904940:intron | 35.0% | |
| CAATCATGAATCTCAACCAT+TGG | - | chr6_2:2673604-2673623 | None:intergenic | 35.0% | |
| ATGTTGCAACAAATTCCATC+TGG | - | chr6_2:2673632-2673651 | None:intergenic | 35.0% | |
| ! | AACTACTTAGATTTTGGACC+GGG | + | chr6_2:2673734-2673753 | Msa0904940:intron | 35.0% |
| TTGTTTAGTACAGCAAATCC+CGG | - | chr6_2:2673755-2673774 | None:intergenic | 35.0% | |
| ATTAAAGTTTATGTGGGGTC+CGG | - | chr6_2:2673919-2673938 | None:intergenic | 35.0% | |
| TAAACATTCCTTTCCTCTTC+TGG | - | chr6_2:2673994-2674013 | None:intergenic | 35.0% | |
| AAGAGAAGTCAGAAAACCAG+GGG | - | chr6_2:2669417-2669436 | None:intergenic | 40.0% | |
| CAAAGAGAAGTCAGAAAACC+AGG | - | chr6_2:2669419-2669438 | None:intergenic | 40.0% | |
| GTTGAGAGAGAGAAAACAGT+TGG | - | chr6_2:2669448-2669467 | None:intergenic | 40.0% | |
| ! | TGCACAAGTTGTTGTTGTTG+AGG | - | chr6_2:2669602-2669621 | None:intergenic | 40.0% |
| !!! | GGCCACTAGGATGTTTTTTT+TGG | - | chr6_2:2669626-2669645 | None:intergenic | 40.0% |
| AGAGGAAAACAGAGGAAACA+GGG | - | chr6_2:2669738-2669757 | None:intergenic | 40.0% | |
| CAATTACTAACAGCAGGTCA+AGG | + | chr6_2:2670132-2670151 | Msa0904940:CDS | 40.0% | |
| GTCTCAAAAAGTCTCTGAAC+CGG | - | chr6_2:2670188-2670207 | None:intergenic | 40.0% | |
| AACTTATCAATGTCCTGAGC+TGG | - | chr6_2:2670254-2670273 | None:intergenic | 40.0% | |
| CTCAGGACATTGATAAGTTG+CGG | + | chr6_2:2670255-2670274 | Msa0904940:CDS | 40.0% | |
| ! | GATAAGTTGCGGTCTGTTTT+AGG | + | chr6_2:2670266-2670285 | Msa0904940:CDS | 40.0% |
| !! | CGGTGTCGAGTTAATTTTCA+TGG | + | chr6_2:2670511-2670530 | Msa0904940:intron | 40.0% |
| ATACTATTGGGTGAGTTGTG+TGG | + | chr6_2:2670942-2670961 | Msa0904940:intron | 40.0% | |
| TACTATTGGGTGAGTTGTGT+GGG | + | chr6_2:2670943-2670962 | Msa0904940:intron | 40.0% | |
| ACACATCACATCTCACACTA+AGG | - | chr6_2:2671009-2671028 | None:intergenic | 40.0% | |
| GTCTCATTCACATTAGACCA+TGG | - | chr6_2:2671345-2671364 | None:intergenic | 40.0% | |
| TGTCTATGTCAAAACCCCAT+AGG | + | chr6_2:2671776-2671795 | Msa0904940:intron | 40.0% | |
| ! | TAGCTTCTCTTTTGTGCAGA+TGG | + | chr6_2:2671982-2672001 | Msa0904940:intron | 40.0% |
| GCCCTGAAATATGGCATATT+AGG | - | chr6_2:2672036-2672055 | None:intergenic | 40.0% | |
| GATGCATTTGCCCTGAAATA+TGG | - | chr6_2:2672045-2672064 | None:intergenic | 40.0% | |
| GAAGAGATATCCGAAGTGAA+GGG | - | chr6_2:2672179-2672198 | None:intergenic | 40.0% | |
| TGAAGAGATATCCGAAGTGA+AGG | - | chr6_2:2672180-2672199 | None:intergenic | 40.0% | |
| CATTCACACAGTCAATGCAT+TGG | + | chr6_2:2672198-2672217 | Msa0904940:intron | 40.0% | |
| TGGATCAATATCGGATGGTT+TGG | - | chr6_2:2672281-2672300 | None:intergenic | 40.0% | |
| ACAGTTGGATCAATATCGGA+TGG | - | chr6_2:2672286-2672305 | None:intergenic | 40.0% | |
| GTCAATACAACGGTAACAGT+TGG | - | chr6_2:2672301-2672320 | None:intergenic | 40.0% | |
| TGTAGAGGAATAACACCAGA+AGG | - | chr6_2:2672529-2672548 | None:intergenic | 40.0% | |
| ATTCCTCTACATAATCACCC+TGG | + | chr6_2:2672538-2672557 | Msa0904940:CDS | 40.0% | |
| ATTCCAGGGTGATTATGTAG+AGG | - | chr6_2:2672544-2672563 | None:intergenic | 40.0% | |
| AAAATGGTAGGAGATTCAGG+AGG | - | chr6_2:2672634-2672653 | None:intergenic | 40.0% | |
| TCTGAGGGTTTGAAAATGGT+AGG | - | chr6_2:2672646-2672665 | None:intergenic | 40.0% | |
| ACATTGCAACCGTTAACTTC+AGG | + | chr6_2:2672907-2672926 | Msa0904940:intron | 40.0% | |
| ! | GGTGAAAGTACAGACAAATG+CGG | + | chr6_2:2672928-2672947 | Msa0904940:intron | 40.0% |
| ! | ACTTTTGCTAACCTCAACTC+AGG | - | chr6_2:2673128-2673147 | None:intergenic | 40.0% |
| GTTGAGGTTAGCAAAAGTGA+AGG | + | chr6_2:2673130-2673149 | Msa0904940:CDS | 40.0% | |
| CCCTTCTATCTTATATCCTG+AGG | + | chr6_2:2673181-2673200 | Msa0904940:CDS | 40.0% | |
| ATCTTATATCCTGAGGATGG+TGG | + | chr6_2:2673188-2673207 | Msa0904940:CDS | 40.0% | |
| TGTGCAGTTCTTGATGTTCT+TGG | + | chr6_2:2673242-2673261 | Msa0904940:CDS | 40.0% | |
| CCATCAAGATCAGAATATGG+AGG | - | chr6_2:2673269-2673288 | None:intergenic | 40.0% | |
| CCTCCATATTCTGATCTTGA+TGG | + | chr6_2:2673266-2673285 | Msa0904940:CDS | 40.0% | |
| CTGCCATCAAGATCAGAATA+TGG | - | chr6_2:2673272-2673291 | None:intergenic | 40.0% | |
| ! | TATCCGTTTTCCAACTTTCC+AGG | + | chr6_2:2673314-2673333 | Msa0904940:CDS | 40.0% |
| ATCGTGTAGTCAAGTGATCT+TGG | + | chr6_2:2673491-2673510 | Msa0904940:intron | 40.0% | |
| AGTCAAGTGATCTTGGTTGT+TGG | + | chr6_2:2673498-2673517 | Msa0904940:intron | 40.0% | |
| AAGCACGCAATGAGACAAAT+TGG | - | chr6_2:2673841-2673860 | None:intergenic | 40.0% | |
| TATCCATACCAGAAGAGGAA+AGG | + | chr6_2:2673983-2674002 | Msa0904940:CDS | 40.0% | |
| ATTCCTTTCCTCTTCTGGTA+TGG | - | chr6_2:2673989-2674008 | None:intergenic | 40.0% | |
| TGCTAACTCTCCACAATAGT+TGG | - | chr6_2:2674081-2674100 | None:intergenic | 40.0% | |
| !! | GTGAAGGTTGGTGAAGATTG+AGG | - | chr6_2:2669523-2669542 | None:intergenic | 45.0% |
| AACAGAGGAAACAGGGGAAT+TGG | - | chr6_2:2669731-2669750 | None:intergenic | 45.0% | |
| GAGGAAAACAGAGGAAACAG+GGG | - | chr6_2:2669737-2669756 | None:intergenic | 45.0% | |
| CAGAGGAAAACAGAGGAAAC+AGG | - | chr6_2:2669739-2669758 | None:intergenic | 45.0% | |
| AACAGAGGAAACAGGGGAAT+TGG | - | chr6_2:2669731-2669750 | None:intergenic | 45.0% | |
| TTACTAACAGCAGGTCAAGG+AGG | + | chr6_2:2670135-2670154 | Msa0904940:CDS | 45.0% | |
| TCAAAAAGTCTCTGAACCGG+CGG | - | chr6_2:2670185-2670204 | None:intergenic | 45.0% | |
| AAGGAAGTCTTTGCTTCCAG+TGG | + | chr6_2:2670212-2670231 | Msa0904940:CDS | 45.0% | |
| AGGAAGTCTTTGCTTCCAGT+GGG | + | chr6_2:2670213-2670232 | Msa0904940:CDS | 45.0% | |
| TATCAATGTCCTGAGCTGGT+GGG | - | chr6_2:2670250-2670269 | None:intergenic | 45.0% | |
| TTATCAATGTCCTGAGCTGG+TGG | - | chr6_2:2670251-2670270 | None:intergenic | 45.0% | |
| AATGTGTCACAGTGTCGTGT+CGG | - | chr6_2:2670441-2670460 | None:intergenic | 45.0% | |
| TCAAAGTACACCGACATGAC+AGG | + | chr6_2:2670622-2670641 | Msa0904940:intron | 45.0% | |
| CAAAGTACACCGACATGACA+GGG | + | chr6_2:2670623-2670642 | Msa0904940:intron | 45.0% | |
| AGTATGTGTCCCTGTCATGT+CGG | - | chr6_2:2670635-2670654 | None:intergenic | 45.0% | |
| ! | TCCTTATTGGTGTCCCTGTT+TGG | + | chr6_2:2670711-2670730 | Msa0904940:intron | 45.0% |
| ACCAAACAGGGACACCAATA+AGG | - | chr6_2:2670715-2670734 | None:intergenic | 45.0% | |
| CAAGAAACGGACACCAAACA+GGG | - | chr6_2:2670727-2670746 | None:intergenic | 45.0% | |
| ACAAGAAACGGACACCAAAC+AGG | - | chr6_2:2670728-2670747 | None:intergenic | 45.0% | |
| ACTATTGGGTGAGTTGTGTG+GGG | + | chr6_2:2670944-2670963 | Msa0904940:intron | 45.0% | |
| GGCTTAAAGCCTATAAGCCT+AGG | + | chr6_2:2671710-2671729 | Msa0904940:intron | 45.0% | |
| GGATCCAAGTCAACATCTTC+TGG | - | chr6_2:2672015-2672034 | None:intergenic | 45.0% | |
| ! | ACTGTTCGATCTGAAACCAG+CGG | - | chr6_2:2672227-2672246 | None:intergenic | 45.0% |
| AGAGGAATAACACCAGAAGG+TGG | - | chr6_2:2672526-2672545 | None:intergenic | 45.0% | |
| ATGCGGCTGTAACTTAGTCA+CGG | + | chr6_2:2672945-2672964 | Msa0904940:intron | 45.0% | |
| ! | AGGGAAAGTACGGACAAATG+TGG | + | chr6_2:2672997-2673016 | Msa0904940:intron | 45.0% |
| TTCATGATTGCGTGACCAGA+TGG | + | chr6_2:2673614-2673633 | Msa0904940:intron | 45.0% | |
| AGGACTATCCATACCAGAAG+AGG | + | chr6_2:2673978-2673997 | Msa0904940:CDS | 45.0% | |
| GTACAGTGGTCCAACTATTG+TGG | + | chr6_2:2674068-2674087 | Msa0904940:CDS | 45.0% | |
| !! | TGCGGTCTGTTTTAGGTACG+AGG | + | chr6_2:2670273-2670292 | Msa0904940:intron | 50.0% |
| CTATTGGGTGAGTTGTGTGG+GGG | + | chr6_2:2670945-2670964 | Msa0904940:intron | 50.0% | |
| TATTGGGTGAGTTGTGTGGG+GGG | + | chr6_2:2670946-2670965 | Msa0904940:intron | 50.0% | |
| GCGTCTGTGTAAGTGGTTCA+TGG | + | chr6_2:2671887-2671906 | Msa0904940:intron | 50.0% | |
| GGGCAAATGCATCTCACAGA+AGG | + | chr6_2:2672052-2672071 | Msa0904940:CDS | 50.0% | |
| ! | CAACTGCGGTGGTTTGGATA+TGG | - | chr6_2:2672870-2672889 | None:intergenic | 50.0% |
| CAACTACAACTGCGGTGGTT+TGG | - | chr6_2:2672876-2672895 | None:intergenic | 50.0% | |
| AACCACCGCAGTTGTAGTTG+CGG | + | chr6_2:2672876-2672895 | Msa0904940:intron | 50.0% | |
| GGTAACCGCAACTACAACTG+CGG | - | chr6_2:2672884-2672903 | None:intergenic | 50.0% | |
| ATGTTGCAGGTCCTGAGTTG+AGG | + | chr6_2:2673114-2673133 | Msa0904940:intron | 50.0% | |
| ! | CTTTTACTGCGGAGAATCCG+AGG | - | chr6_2:2673461-2673480 | None:intergenic | 50.0% |
| TTAGTGCCTGCACACAATCC+AGG | + | chr6_2:2673860-2673879 | Msa0904940:intron | 50.0% | |
| ! | TGATAGTGACATGTGGGACC+TGG | - | chr6_2:2673881-2673900 | None:intergenic | 50.0% |
| GTGGAAGGAAGGATGTACAG+TGG | + | chr6_2:2674054-2674073 | Msa0904940:CDS | 50.0% | |
| ACAGCAGGTCAAGGAGGAAC+CGG | + | chr6_2:2670141-2670160 | Msa0904940:CDS | 55.0% | |
| GTCTTTGCTTCCAGTGGGAC+AGG | + | chr6_2:2670218-2670237 | Msa0904940:CDS | 55.0% | |
| TGGGACAATTCCTGTCCCAC+TGG | - | chr6_2:2670231-2670250 | None:intergenic | 55.0% | |
| AGGAATTGTCCCACCAGCTC+AGG | + | chr6_2:2670238-2670257 | Msa0904940:CDS | 55.0% | |
| ! | CGGAGGGAGTATATCTCGTG+GGG | - | chr6_2:2671154-2671173 | None:intergenic | 55.0% |
| ! | CCGGAGGGAGTATATCTCGT+GGG | - | chr6_2:2671155-2671174 | None:intergenic | 55.0% |
| CCCACGAGATATACTCCCTC+CGG | + | chr6_2:2671152-2671171 | Msa0904940:intron | 55.0% | |
| ! | ACCGGAGGGAGTATATCTCG+TGG | - | chr6_2:2671156-2671175 | None:intergenic | 55.0% |
| CTGTGTCGCGTCTGTGTAAG+TGG | + | chr6_2:2671880-2671899 | Msa0904940:intron | 55.0% | |
| AACCGCAACTACAACTGCGG+TGG | - | chr6_2:2672881-2672900 | None:intergenic | 55.0% | |
| TGCAAGTTGCCACCATCCTC+AGG | - | chr6_2:2673200-2673219 | None:intergenic | 55.0% | |
| GCATCTTCTTCTGACGCCGC+CGG | - | chr6_2:2670163-2670182 | None:intergenic | 60.0% | |
| GCGTCAGAAGAAGATGCCGC+CGG | + | chr6_2:2670166-2670185 | Msa0904940:CDS | 60.0% | |
| ! | GTCAATGCATTGGCGACCGC+TGG | + | chr6_2:2672208-2672227 | Msa0904940:intron | 60.0% |
| GTGGGACCTGGATTGTGTGC+AGG | - | chr6_2:2673869-2673888 | None:intergenic | 60.0% | |
| GCAGGTCAAGGAGGAACCGG+CGG | + | chr6_2:2670144-2670163 | Msa0904940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 2669404 | 2674399 | 2669404 | ID=Msa0904940;Name=Msa0904940 |
| chr6_2 | mRNA | 2669404 | 2674399 | 2669404 | ID=Msa0904940-mRNA-1;Parent=Msa0904940;Name=Msa0904940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=291|1|1|1|0.8|0.66|6|301|279 |
| chr6_2 | exon | 2669404 | 2669656 | 2669404 | ID=Msa0904940-mRNA-1:exon:865;Parent=Msa0904940-mRNA-1 |
| chr6_2 | exon | 2670030 | 2670287 | 2670030 | ID=Msa0904940-mRNA-1:exon:866;Parent=Msa0904940-mRNA-1 |
| chr6_2 | exon | 2672001 | 2672119 | 2672001 | ID=Msa0904940-mRNA-1:exon:867;Parent=Msa0904940-mRNA-1 |
| chr6_2 | exon | 2672505 | 2672667 | 2672505 | ID=Msa0904940-mRNA-1:exon:868;Parent=Msa0904940-mRNA-1 |
| chr6_2 | exon | 2673123 | 2673335 | 2673123 | ID=Msa0904940-mRNA-1:exon:869;Parent=Msa0904940-mRNA-1 |
| chr6_2 | exon | 2673974 | 2674399 | 2673974 | ID=Msa0904940-mRNA-1:exon:870;Parent=Msa0904940-mRNA-1 |
| chr6_2 | five_prime_UTR | 2669404 | 2669656 | 2669404 | ID=Msa0904940-mRNA-1:five_prime_utr;Parent=Msa0904940-mRNA-1 |
| chr6_2 | five_prime_UTR | 2670030 | 2670067 | 2670030 | ID=Msa0904940-mRNA-1:five_prime_utr;Parent=Msa0904940-mRNA-1 |
| chr6_2 | CDS | 2670068 | 2670287 | 2670068 | ID=Msa0904940-mRNA-1:cds;Parent=Msa0904940-mRNA-1 |
| chr6_2 | CDS | 2672001 | 2672119 | 2672001 | ID=Msa0904940-mRNA-1:cds;Parent=Msa0904940-mRNA-1 |
| chr6_2 | CDS | 2672505 | 2672667 | 2672505 | ID=Msa0904940-mRNA-1:cds;Parent=Msa0904940-mRNA-1 |
| chr6_2 | CDS | 2673123 | 2673335 | 2673123 | ID=Msa0904940-mRNA-1:cds;Parent=Msa0904940-mRNA-1 |
| chr6_2 | CDS | 2673974 | 2674098 | 2673974 | ID=Msa0904940-mRNA-1:cds;Parent=Msa0904940-mRNA-1 |
| chr6_2 | three_prime_UTR | 2674099 | 2674399 | 2674099 | ID=Msa0904940-mRNA-1:three_prime_utr;Parent=Msa0904940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
