AlfalfaGEDB | Msa1215660

M. sativa cultivar zhongmu-4 / Msa1215660

KEGG: K08193
GO: GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656
PFAM: PF07690.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215660	XP_003609470.2	79.395	529	62	9	1	484	1	527	0.0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215660	sp\|Q3E9A0\|ANTR6_ARATH	52.751	527	190	9	1	484	1	511	5.84e-172	497

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215660	G7JGK7	79.395	529	62	9	1	484	1	527	0.0	787

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1215660	0.811996	5.294450e-51	-8.615850e-47
Msa0002690	Msa1215660	0.818491	1.906822e-52	-8.615850e-47
Msa0002700	Msa1215660	0.822550	2.230916e-53	-8.615850e-47
Msa0003450	Msa1215660	0.818836	1.592483e-52	-8.615850e-47
Msa0005500	Msa1215660	0.851024	1.161737e-60	-8.615850e-47
Msa0007810	Msa1215660	0.811623	6.381863e-51	-8.615850e-47
Msa0011060	Msa1215660	0.837451	5.159651e-57	-8.615850e-47
Msa0011100	Msa1215660	0.837346	5.486253e-57	-8.615850e-47
Msa0014970	Msa1215660	0.819482	1.134796e-52	-8.615850e-47
Msa0016830	Msa1215660	0.842611	2.326468e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215660	MtrunA17_Chr4g0064801	79.395	529	62	9	1	484	1	527	0.0	787
Msa1215660	MtrunA17_Chr3g0104361	33.792	509	255	15	37	485	30	516	4.16e-72	237
Msa1215660	MtrunA17_Chr8g0348761	32.563	519	290	11	21	485	76	588	8.79e-72	238
Msa1215660	MtrunA17_Chr7g0247871	32.965	452	260	9	73	485	87	534	5.30e-69	229
Msa1215660	MtrunA17_Chr7g0241591	28.767	438	229	10	103	481	90	503	7.59e-42	156
Msa1215660	MtrunA17_Chr4g0013731	26.552	467	235	13	102	485	2	443	9.86e-36	137
Msa1215660	MtrunA17_Chr2g0290941	45.522	134	71	1	313	446	1	132	2.46e-28	110
Msa1215660	MtrunA17_Chr5g0429461	30.319	188	129	1	282	469	392	577	3.63e-24	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215660	AT5G20380.1	52.751	527	190	9	1	484	1	511	5.94e-173	497
Msa1215660	AT5G20380.2	52.751	527	190	9	1	484	53	563	1.70e-172	498
Msa1215660	AT4G00370.1	32.114	492	256	12	46	485	76	541	2.10e-65	221
Msa1215660	AT2G29650.1	33.485	439	248	10	85	485	80	512	3.93e-65	219
Msa1215660	AT2G29650.3	33.500	400	222	10	124	485	7	400	4.57e-57	195
Msa1215660	AT2G29650.4	33.333	396	220	10	128	485	1	390	4.70e-55	189
Msa1215660	AT2G29650.2	32.075	318	178	7	85	365	80	396	3.38e-39	147
Msa1215660	AT5G44370.1	26.471	442	252	12	103	485	5	432	7.02e-33	130
Msa1215660	AT2G38060.1	37.037	189	116	2	293	481	324	509	7.22e-29	119
Msa1215660	AT2G38060.1	35.780	109	55	2	104	212	95	188	1.82e-12	69.7

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Find 124 sgRNAs with CRISPR-Local

Find 1155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGAGGCTTACTGC+TGG	0.585178	8_1:-76992301	None:intergenic
AAAAGGAGTTGAAACCACTA+CGG	0.628472	8_1:+76991096	Msa1215660:CDS
AAATCTGACAGAAGCTGCAT+GGG	0.540394	8_1:+76990102	Msa1215660:CDS
AACAACACTTGTCTGGGAAT+TGG	0.319205	8_1:+76978511	Msa1215660:CDS
AACTTGAACAACACTTGTCT+GGG	0.460403	8_1:+76978505	Msa1215660:CDS
AATACTGTTGGAGCTGTACC+TGG	0.500410	8_1:+76992071	Msa1215660:CDS
AATCCTTGTCAATATTAAGC+CGG	0.531256	8_1:-76981692	None:intergenic
AATGTAGGATGTACCATGGA+AGG	0.563009	8_1:+76989084	Msa1215660:intron
ACAAATATTGAAGCCAGAGG+TGG	0.581518	8_1:-76991034	None:intergenic
ACAGGTTACCTAAAATATGT+GGG	0.630984	8_1:-76989193	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCAATGAGTTTGTATCTAA+GGG	-	chr8_1:76978556-76978575	None:intergenic	30.0%
TTCCAATGAGTTTGTATCTA+AGG	-	chr8_1:76978557-76978576	None:intergenic	30.0%
ATTCCAATGTCACATCAATT+TGG	+	chr8_1:76978762-76978781	Msa1215660:CDS	30.0%
TAAAGGAGTTAAAAGGTTCA+GGG	-	chr8_1:76978979-76978998	None:intergenic	30.0%
TTAAAGGAGTTAAAAGGTTC+AGG	-	chr8_1:76978980-76978999	None:intergenic	30.0%
AAGGGATTAAAGGAGTTAAA+AGG	-	chr8_1:76978986-76979005	None:intergenic	30.0%
AGGTAAATAAGACCCATTTA+AGG	-	chr8_1:76979194-76979213	None:intergenic	30.0%
AAGTAAGATGATTACCCAAA+TGG	-	chr8_1:76979298-76979317	None:intergenic	30.0%
TACATAAGCACTTATATGAC+AGG	-	chr8_1:76979341-76979360	None:intergenic	30.0%
AAACTGTTATGGAAAGCTTA+TGG	-	chr8_1:76979484-76979503	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	76978225	76992742	76978225	ID=Msa1215660;Name=Msa1215660
chr8_1	mRNA	76978225	76992742	76978225	ID=Msa1215660-mRNA-1;Parent=Msa1215660;Name=Msa1215660-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0\|0.52\|0.44\|0.94\|0.52\|0.38\|18\|0\|489
chr8_1	exon	76978225	76978417	76978225	ID=Msa1215660-mRNA-1:exon:26538;Parent=Msa1215660-mRNA-1
chr8_1	exon	76978433	76978614	76978433	ID=Msa1215660-mRNA-1:exon:26539;Parent=Msa1215660-mRNA-1
chr8_1	exon	76978741	76978858	76978741	ID=Msa1215660-mRNA-1:exon:26540;Parent=Msa1215660-mRNA-1
chr8_1	exon	76980391	76980463	76980391	ID=Msa1215660-mRNA-1:exon:26541;Parent=Msa1215660-mRNA-1
chr8_1	exon	76981618	76981717	76981618	ID=Msa1215660-mRNA-1:exon:26542;Parent=Msa1215660-mRNA-1
chr8_1	exon	76983654	76983659	76983654	ID=Msa1215660-mRNA-1:exon:26543;Parent=Msa1215660-mRNA-1
chr8_1	exon	76987901	76987946	76987901	ID=Msa1215660-mRNA-1:exon:26544;Parent=Msa1215660-mRNA-1
chr8_1	exon	76988116	76988169	76988116	ID=Msa1215660-mRNA-1:exon:26545;Parent=Msa1215660-mRNA-1
chr8_1	exon	76988824	76988888	76988824	ID=Msa1215660-mRNA-1:exon:26546;Parent=Msa1215660-mRNA-1
chr8_1	exon	76989091	76989206	76989091	ID=Msa1215660-mRNA-1:exon:26547;Parent=Msa1215660-mRNA-1
chr8_1	exon	76990087	76990123	76990087	ID=Msa1215660-mRNA-1:exon:26548;Parent=Msa1215660-mRNA-1
chr8_1	exon	76991022	76991117	76991022	ID=Msa1215660-mRNA-1:exon:26549;Parent=Msa1215660-mRNA-1
chr8_1	exon	76991645	76991786	76991645	ID=Msa1215660-mRNA-1:exon:26550;Parent=Msa1215660-mRNA-1
chr8_1	exon	76991909	76991961	76991909	ID=Msa1215660-mRNA-1:exon:26551;Parent=Msa1215660-mRNA-1
chr8_1	exon	76992062	76992148	76992062	ID=Msa1215660-mRNA-1:exon:26552;Parent=Msa1215660-mRNA-1
chr8_1	exon	76992237	76992318	76992237	ID=Msa1215660-mRNA-1:exon:26553;Parent=Msa1215660-mRNA-1
chr8_1	exon	76992537	76992545	76992537	ID=Msa1215660-mRNA-1:exon:26554;Parent=Msa1215660-mRNA-1
chr8_1	exon	76992735	76992742	76992735	ID=Msa1215660-mRNA-1:exon:26555;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76978225	76978417	76978225	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76978433	76978614	76978433	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76978741	76978858	76978741	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76980391	76980463	76980391	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76981618	76981717	76981618	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76983654	76983659	76983654	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76987901	76987946	76987901	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76988116	76988169	76988116	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76988824	76988888	76988824	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76989091	76989206	76989091	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76990087	76990123	76990087	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76991022	76991117	76991022	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76991645	76991786	76991645	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76991909	76991961	76991909	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76992062	76992148	76992062	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76992237	76992318	76992237	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76992537	76992545	76992537	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1
chr8_1	CDS	76992735	76992742	76992735	ID=Msa1215660-mRNA-1:cds;Parent=Msa1215660-mRNA-1

Gene Sequence

>Msa1215660

ATGACCATAATCACTCTCAAACCACATAATTGTAAATCATCATGTTTCTTTCCTCAACCTCAAACTCAAACTCAGAATCAAAGAACAAATTCACACAACCCTTTTATCAAAACCACTTTTCAACGTTTTCACTTCCACTTCACACCTTCCAAACTCATCCACAGAACCAAACAAACAACAGTAGTATCATGTAATATCAAAGAAACCCATAACAAGCTGTCCAAGACCAAAATTAATGCTCTCTCCGACCTCGACGATGATGTTGAACTTGAACAACACTTGTCTGGGAATTGGCCATCATGGAAGAATCTTCCCCTTAGATACAAACTCATTGGAACTACTTCACTTGCCTTTGTTATCTGTAACATGGACAAGGTGAATTTGAGTATTGCAATAATTCCAATGTCACATCAATTTGGATGGAACTCATCAACAGCAGGGTTGGTTCAGTCTTCATTCTTTTGGGGTTATGCATTGAGTCAATTGCCTGGTGGATGGACATGTCTCTTTCTGAATATCAATCCCGATTTCCATGAAATGGAGGCCAAACTAGAACTGCCATTCCTGAATGTTCTTGTGGTTGGAGTACTGGTATGGTCAGTGGCTACAGCTCTTGTTCCTTTTCTTGCTGGATATATGCCCGGCTTAATATTGACAAGGATTTTGGTGAAGGCTTCTTTTCGCTCCTCCTCTCATCCAAAGTCTTGGTTGGGAATCGGGTTTCAATTTCTTGAAGAAGGTGAAACACAGTTAGCTGCAGAATCTCTTTCACCTGCCCAGGGTAACATGACACAATCATGGCAAACTTCTCTAAAAGAAATGAATGGCTCTTTGAAGGATGTACCATGGAAGGCATTTTTCCAAAGTCGCGCTGTATGGGCAATGATTTACGCTCATTTCTGTGGTAGCTGGGGTCACTATACCTGTCTCTCATGGCTTCCCACATATTTTAGTCAGGAGCTGGACCTAAATCTGACAGAAGCTGCATGGGTCTCTATTCTTCCACCTCTGGCTTCAATATTTGTGACCAGTATTGCATCACAATTAGCCGACAGCTTGATTTCAAAAGGAGTTGAAACCACTACGGTTCGAAAGATCTGCCAATCAATTGCATTTTTATCTCCTGCATTCTGCATGACTCTTGCATCACTTGATCTAGGATTACCGCCTTGGGAGATGGTCGGCCTTCTCACAGGTGGTTTAGCCCTCTCAAGCTTTGCCTTGTCAGGACTTTATTGTACTCATCAAGACATCTCACCAGAATATGCAAGTATACTTCTGGGTATAACCAATACTGTTGGAGCTGTACCTGGAATTGTAGGTGTAGCCCTCACTGGCTATCTTCTTGATATGACTCATTCATGGAGTATATCACTATATGCACCATCAATCTTCTTCTATTTGAGTGGTACCGCCGTATGGTTGGTATTTGCCAGCAGTAAGCCTCAAAACGATGCTGCGTTAGTT

Protein sequence

>Msa1215660

MTIITLKPHNCKSSCFFPQPQTQTQNQRTNSHNPFIKTTFQRFHFHFTPSKLIHRTKQTTVVSCNIKETHNKLSKTKINALSDLDDDVELEQHLSGNWPSWKNLPLRYKLIGTTSLAFVICNMDKVNLSIAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWTCLFLNINPDFHEMEAKLELPFLNVLVVGVLVWSVATALVPFLAGYMPGLILTRILVKASFRSSSHPKSWLGIGFQFLEEGETQLAAESLSPAQGNMTQSWQTSLKEMNGSLKDVPWKAFFQSRAVWAMIYAHFCGSWGHYTCLSWLPTYFSQELDLNLTEAAWVSILPPLASIFVTSIASQLADSLISKGVETTTVRKICQSIAFLSPAFCMTLASLDLGLPPWEMVGLLTGGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDMTHSWSISLYAPSIFFYLSGTAVWLVFASSKPQNDAALV