Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938010 | A0A072U5J3 | 40.816 | 147 | 59 | 2 | 152 | 270 | 55 | 201 | 4.14e-22 | 101 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615580 | Msa0938010 | 0.818319 | 2.085433e-52 | -8.615850e-47 |
| Msa0615680 | Msa0938010 | 0.807056 | 6.090096e-50 | -8.615850e-47 |
| Msa0644030 | Msa0938010 | 0.803864 | 2.843585e-49 | -8.615850e-47 |
| Msa0687230 | Msa0938010 | 0.819573 | 1.081818e-52 | -8.615850e-47 |
| Msa0694990 | Msa0938010 | 0.803508 | 3.372045e-49 | -8.615850e-47 |
| Msa0751010 | Msa0938010 | 0.806465 | 8.117076e-50 | -8.615850e-47 |
| Msa0794050 | Msa0938010 | 0.819684 | 1.020320e-52 | -8.615850e-47 |
| Msa0818770 | Msa0938010 | 0.819347 | 1.218492e-52 | -8.615850e-47 |
| Msa0193600 | Msa0938010 | 0.808184 | 3.508109e-50 | -8.615850e-47 |
| Msa0365860 | Msa0938010 | 0.804617 | 1.982135e-49 | -8.615850e-47 |
| Msa0384670 | Msa0938010 | 0.803527 | 3.340925e-49 | -8.615850e-47 |
| Msa0436200 | Msa0938010 | 0.801751 | 7.765693e-49 | -8.615850e-47 |
| Msa0478580 | Msa0938010 | 0.808050 | 3.745900e-50 | -8.615850e-47 |
| Msa0241830 | Msa0938010 | 0.814267 | 1.680373e-51 | -8.615850e-47 |
| Msa0262480 | Msa0938010 | 0.823580 | 1.282919e-53 | -8.615850e-47 |
| Msa0273650 | Msa0938010 | 0.809386 | 1.941752e-50 | -8.615850e-47 |
| Msa0300350 | Msa0938010 | 0.810456 | 1.142536e-50 | -8.615850e-47 |
| Msa0511770 | Msa0938010 | 0.803024 | 4.245563e-49 | -8.615850e-47 |
| Msa0547990 | Msa0938010 | 0.819030 | 1.438433e-52 | -8.615850e-47 |
| Msa0905990 | Msa0938010 | 0.957637 | 1.676780e-115 | -8.615850e-47 |
| Msa0913240 | Msa0938010 | 0.803833 | 2.886165e-49 | -8.615850e-47 |
| Msa0938010 | Msa1070390 | 0.800242 | 1.579654e-48 | -8.615850e-47 |
| Msa0938010 | Msa1127590 | 0.811574 | 6.539209e-51 | -8.615850e-47 |
| Msa0938010 | Msa1165780 | 0.818706 | 1.703853e-52 | -8.615850e-47 |
| Msa0938010 | Msa1173900 | 0.817194 | 3.742859e-52 | -8.615850e-47 |
| Msa0938010 | Msa1206650 | 0.805777 | 1.133393e-49 | -8.615850e-47 |
| Msa0938010 | Msa1303580 | 0.818379 | 2.021658e-52 | -8.615850e-47 |
| Msa0938010 | Msa1351540 | 0.813104 | 3.030945e-51 | -8.615850e-47 |
| Msa0938010 | Msa1459960 | 0.806443 | 8.207425e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938010 | MtrunA17_Chr6g0468681 | 46.392 | 97 | 36 | 2 | 78 | 158 | 1 | 97 | 1.96e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAACACTCGACTGTTAA+AGG | 0.173463 | 6_3:+9534289 | None:intergenic |
| TCGCCATTGGAACGTGTTTC+CGG | 0.199168 | 6_3:+9534667 | None:intergenic |
| AATTTACCCATCATCATAAA+AGG | 0.231721 | 6_3:+9534436 | None:intergenic |
| TTAAAGGATGGTGGAAGGAG+GGG | 0.305387 | 6_3:-9534714 | Msa0938010:CDS |
| CTCACTGAGGAAAAGGTTAA+AGG | 0.307407 | 6_3:-9534730 | Msa0938010:CDS |
| AACAAATAAGAGATGGATCT+TGG | 0.327273 | 6_3:-9534584 | Msa0938010:CDS |
| GTCAAGAGAAAGCAAATTTA+CGG | 0.332482 | 6_3:-9534495 | Msa0938010:CDS |
| TCAATCAATCCAACCATAAC+TGG | 0.335455 | 6_3:+9534769 | None:intergenic |
| TGTCTCGTGGAGGCCGATCT+TGG | 0.345253 | 6_3:-9537206 | Msa0938010:CDS |
| TTCTCTAGAAAATTGCTTAG+TGG | 0.378289 | 6_3:-9537440 | Msa0938010:CDS |
| GGAATCATGATGAATATCTT+AGG | 0.383926 | 6_3:-9534862 | Msa0938010:CDS |
| CATAACACTCGACTGTTAAA+GGG | 0.389314 | 6_3:+9534290 | None:intergenic |
| TCATATGTTTAATCCAGTTA+TGG | 0.410645 | 6_3:-9534782 | Msa0938010:CDS |
| TAAAGGATGGTGGAAGGAGG+GGG | 0.411581 | 6_3:-9534713 | Msa0938010:CDS |
| GCTTTCTCTTGACTACAATC+TGG | 0.415041 | 6_3:+9534505 | None:intergenic |
| GGTTAAAGGATGGTGGAAGG+AGG | 0.417552 | 6_3:-9534716 | Msa0938010:CDS |
| CTTTCAAATTCACATTGATC+TGG | 0.418861 | 6_3:+9537235 | None:intergenic |
| AGTAGGCTGGATAGATGTTC+CGG | 0.432114 | 6_3:-9534686 | Msa0938010:CDS |
| GATTTCCGGTGGAGTTGGTC+TGG | 0.440575 | 6_3:-9537483 | Msa0938010:CDS |
| TTCAAGGCTCACTGAGGAAA+AGG | 0.447645 | 6_3:-9534737 | Msa0938010:CDS |
| GTTAAAGGATGGTGGAAGGA+GGG | 0.464998 | 6_3:-9534715 | Msa0938010:CDS |
| ATGATGGGTAAATTTAAAGA+TGG | 0.496580 | 6_3:-9534427 | Msa0938010:CDS |
| AAGAGATGGATCTTGGTTGA+AGG | 0.508170 | 6_3:-9534577 | Msa0938010:CDS |
| GATGTGAAATTGTCTTAATG+AGG | 0.509961 | 6_3:+9534458 | None:intergenic |
| TATAAGATTTCCGGTGGAGT+TGG | 0.512269 | 6_3:-9537488 | Msa0938010:CDS |
| ATGTTTAATCCAGTTATGGT+TGG | 0.517438 | 6_3:-9534778 | Msa0938010:CDS |
| CAGATCAATGTGAATTTGAA+AGG | 0.523310 | 6_3:-9537234 | Msa0938010:CDS |
| ATCTTAGGTTGGAATGTCAC+AGG | 0.534537 | 6_3:-9534847 | Msa0938010:CDS |
| TGATTGACACAAAACATTCA+AGG | 0.536208 | 6_3:-9534753 | Msa0938010:CDS |
| TGAATGCTTTCAGATTGTCC+TGG | 0.536322 | 6_3:+9534814 | None:intergenic |
| CTTCAGAAACGTATTGATGT+GGG | 0.540400 | 6_3:-9534547 | Msa0938010:CDS |
| GAAGTTTAACAAATAAGAGA+TGG | 0.544075 | 6_3:-9534591 | Msa0938010:CDS |
| TCATGATGAATATCTTAGGT+TGG | 0.545535 | 6_3:-9534858 | Msa0938010:CDS |
| GCTTCAGAAACGTATTGATG+TGG | 0.565440 | 6_3:-9534548 | Msa0938010:CDS |
| TGGCGAGAAAAGTGAGGGAA+TGG | 0.574001 | 6_3:-9534650 | Msa0938010:CDS |
| TTTGTTTATAAGATTTCCGG+TGG | 0.577268 | 6_3:-9537494 | Msa0938010:CDS |
| AGGAAAAGGTTAAAGGATGG+TGG | 0.583886 | 6_3:-9534723 | Msa0938010:CDS |
| ACGATGTCGGGATTAGAGAC+AGG | 0.585282 | 6_3:-9534328 | Msa0938010:CDS |
| AAAGGTTAAAGGATGGTGGA+AGG | 0.586600 | 6_3:-9534719 | Msa0938010:CDS |
| CTAGACCAGACCAACTCCAC+CGG | 0.593462 | 6_3:+9537478 | None:intergenic |
| GTTCCGGAAACACGTTCCAA+TGG | 0.594759 | 6_3:-9534670 | Msa0938010:CDS |
| TTGAAAGGTGTTGTGTCTCG+TGG | 0.605054 | 6_3:-9537219 | Msa0938010:CDS |
| TCCAATGGCGAGAAAAGTGA+GGG | 0.612722 | 6_3:-9534655 | Msa0938010:CDS |
| TTCCAATGGCGAGAAAAGTG+AGG | 0.630676 | 6_3:-9534656 | Msa0938010:CDS |
| GCTTAGTGGTTGTATCATGT+CGG | 0.635947 | 6_3:-9537426 | Msa0938010:CDS |
| GTGAGGGAATGGTATTCGCG+TGG | 0.647327 | 6_3:-9534639 | Msa0938010:CDS |
| GTCACAGGAATTAATCAACC+AGG | 0.651057 | 6_3:-9534832 | Msa0938010:CDS |
| CTGAGGAAAAGGTTAAAGGA+TGG | 0.658281 | 6_3:-9534726 | Msa0938010:CDS |
| AAAGGTGTTGTGTCTCGTGG+AGG | 0.673823 | 6_3:-9537216 | Msa0938010:CDS |
| AAAACATTCAAGGCTCACTG+AGG | 0.736310 | 6_3:-9534743 | Msa0938010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATAAATTATTTTTGAT+TGG | - | chr6_3:9535758-9535777 | Msa0938010:intron | 10.0% |
| !!! | TTTTGATTTTTATCAATATA+TGG | - | chr6_3:9536579-9536598 | Msa0938010:intron | 10.0% |
| !! | AGTTAAAAAATTAACAGTTA+TGG | - | chr6_3:9534787-9534806 | Msa0938010:CDS | 15.0% |
| !! | GTTAAAAAATTAACAGTTAT+GGG | - | chr6_3:9534788-9534807 | Msa0938010:CDS | 15.0% |
| !! | AATAATTTAAGGACAATATA+GGG | + | chr6_3:9535323-9535342 | None:intergenic | 15.0% |
| !! | ATTGATATTTGTTTGTAATT+CGG | - | chr6_3:9535391-9535410 | Msa0938010:intron | 15.0% |
| !!! | ATGTTTGACATTTTTTTTTA+GGG | + | chr6_3:9535525-9535544 | None:intergenic | 15.0% |
| !!! | TATGTTTGACATTTTTTTTT+AGG | + | chr6_3:9535526-9535545 | None:intergenic | 15.0% |
| !!! | TTTTGATTTTTATCAAGATA+TGG | - | chr6_3:9536510-9536529 | Msa0938010:intron | 15.0% |
| !! | TTGATAAAAATCAAAACTAT+TGG | + | chr6_3:9536575-9536594 | None:intergenic | 15.0% |
| !!! | TCTTTTGTTTATAAGATTTC+CGG | - | chr6_3:9534290-9534309 | Msa0938010:CDS | 20.0% |
| !!! | TTGAAATTCTCTATTTTCAA+AGG | - | chr6_3:9534927-9534946 | Msa0938010:intron | 20.0% |
| !! | TGCAATTCATCTATAAATTA+AGG | + | chr6_3:9535144-9535163 | None:intergenic | 20.0% |
| !! | TTACGAACAATCAATTAAAT+TGG | + | chr6_3:9535215-9535234 | None:intergenic | 20.0% |
| !! | GAATAATTTAAGGACAATAT+AGG | + | chr6_3:9535324-9535343 | None:intergenic | 20.0% |
| !! | TTGATATTTGTTTGTAATTC+GGG | - | chr6_3:9535392-9535411 | Msa0938010:intron | 20.0% |
| !! | ATTTAATGTGTTTGTTTACA+CGG | - | chr6_3:9535545-9535564 | Msa0938010:intron | 20.0% |
| !!! | AATAATTAGTTGATTCAGTT+TGG | + | chr6_3:9535693-9535712 | None:intergenic | 20.0% |
| !! | AATCTAAATCATATCAATTG+AGG | + | chr6_3:9535716-9535735 | None:intergenic | 20.0% |
| !! | AAAACAGAAAATAGAATGAA+GGG | + | chr6_3:9536458-9536477 | None:intergenic | 20.0% |
| !!! | TTTGTTTGATTTCTTTCATT+TGG | - | chr6_3:9536475-9536494 | Msa0938010:intron | 20.0% |
| !!! | TTGTTTGATTTCTTTCATTT+GGG | - | chr6_3:9536476-9536495 | Msa0938010:intron | 20.0% |
| !! | CTTGATAAAAATCAAAACTT+TGG | + | chr6_3:9536507-9536526 | None:intergenic | 20.0% |
| !!! | ATGAACAAAATGTCAATTTT+AGG | - | chr6_3:9537394-9537413 | Msa0938010:CDS | 20.0% |
| !!! | TGAACAAAATGTCAATTTTA+GGG | - | chr6_3:9537395-9537414 | Msa0938010:CDS | 20.0% |
| !!! | TTAAAAAGCTCTGAAAATTT+AGG | + | chr6_3:9537432-9537451 | None:intergenic | 20.0% |
| ! | TAGTCATTTCTTCTTAAACA+AGG | + | chr6_3:9534706-9534725 | None:intergenic | 25.0% |
| ! | TTTGGTTACTCTCATAATAT+TGG | - | chr6_3:9534857-9534876 | Msa0938010:CDS | 25.0% |
| ! | AGTTCCTTATCTTTGATTAA+TGG | - | chr6_3:9534984-9535003 | Msa0938010:intron | 25.0% |
| !!! | TTAAATTGGTTTTGTCAACA+TGG | + | chr6_3:9535201-9535220 | None:intergenic | 25.0% |
| ! | GAAGCTTAAATTTGTAATGT+TGG | + | chr6_3:9535598-9535617 | None:intergenic | 25.0% |
| !! | TTTTTACATTTTCTTTGCCT+TGG | - | chr6_3:9535622-9535641 | Msa0938010:intron | 25.0% |
| !! | TTTTACATTTTCTTTGCCTT+GGG | - | chr6_3:9535623-9535642 | Msa0938010:intron | 25.0% |
| !!! | GTTAAATAGGTCTTTTTCAT+GGG | + | chr6_3:9535917-9535936 | None:intergenic | 25.0% |
| !! | CACTCGTTTTATCAATTTTT+TGG | - | chr6_3:9536247-9536266 | Msa0938010:intron | 25.0% |
| !! | TATGATTTGTAGTGTGATTT+AGG | - | chr6_3:9536288-9536307 | Msa0938010:intron | 25.0% |
| !! | ATGATTTGTAGTGTGATTTA+GGG | - | chr6_3:9536289-9536308 | Msa0938010:intron | 25.0% |
| !!! | TTTTAACTAAAATCGTCATC+TGG | - | chr6_3:9536348-9536367 | Msa0938010:intron | 25.0% |
| ! | TTTAACTAAAATCGTCATCT+GGG | - | chr6_3:9536349-9536368 | Msa0938010:intron | 25.0% |
| !! | TTTTGTCCTAAAAATGCAAA+TGG | - | chr6_3:9536381-9536400 | Msa0938010:intron | 25.0% |
| ! | TTTGTCCTAAAAATGCAAAT+GGG | - | chr6_3:9536382-9536401 | Msa0938010:intron | 25.0% |
| ! | CAAAACAGAAAATAGAATGA+AGG | + | chr6_3:9536459-9536478 | None:intergenic | 25.0% |
| ! | TCATATGTTTAATCCAGTTA+TGG | - | chr6_3:9537005-9537024 | Msa0938010:intron | 25.0% |
| ! | GAAGTTTAACAAATAAGAGA+TGG | - | chr6_3:9537196-9537215 | Msa0938010:intron | 25.0% |
| ! | AATTTACCCATCATCATAAA+AGG | + | chr6_3:9537354-9537373 | None:intergenic | 25.0% |
| !!! | ATGATGGGTAAATTTAAAGA+TGG | - | chr6_3:9537360-9537379 | Msa0938010:intron | 25.0% |
| !! | AAATTGACATTTTGTTCATC+TGG | + | chr6_3:9537393-9537412 | None:intergenic | 25.0% |
| TTTGTTTATAAGATTTCCGG+TGG | - | chr6_3:9534293-9534312 | Msa0938010:CDS | 30.0% | |
| ! | TTCTCTAGAAAATTGCTTAG+TGG | - | chr6_3:9534347-9534366 | Msa0938010:CDS | 30.0% |
| !! | ATACTTTTTGTGATTGTGCT+CGG | - | chr6_3:9534462-9534481 | Msa0938010:CDS | 30.0% |
| CTTTCAAATTCACATTGATC+TGG | + | chr6_3:9534555-9534574 | None:intergenic | 30.0% | |
| CAGATCAATGTGAATTTGAA+AGG | - | chr6_3:9534553-9534572 | Msa0938010:CDS | 30.0% | |
| !! | ATGACTAGATTCTAGTTCAA+TGG | - | chr6_3:9534719-9534738 | Msa0938010:CDS | 30.0% |
| TTGCATGGAAAATTCATGTT+TGG | - | chr6_3:9534839-9534858 | Msa0938010:CDS | 30.0% | |
| ACTGCCATTAATCAAAGATA+AGG | + | chr6_3:9534991-9535010 | None:intergenic | 30.0% | |
| ACTATGAATCTTGAAAACCA+AGG | + | chr6_3:9535039-9535058 | None:intergenic | 30.0% | |
| ATGGCTTGATAAGCAAAATT+AGG | + | chr6_3:9535182-9535201 | None:intergenic | 30.0% | |
| AATATCCTATCGGTATTTGT+CGG | + | chr6_3:9535250-9535269 | None:intergenic | 30.0% | |
| GATACATAGCAATATCCTAT+CGG | + | chr6_3:9535260-9535279 | None:intergenic | 30.0% | |
| TATCCAATCAAATTTCTTCC+TGG | + | chr6_3:9535371-9535390 | None:intergenic | 30.0% | |
| !! | GGTTAAATAGGTCTTTTTCA+TGG | + | chr6_3:9535918-9535937 | None:intergenic | 30.0% |
| AAAAAGACCTATTTAACCCT+AGG | - | chr6_3:9535920-9535939 | Msa0938010:intron | 30.0% | |
| AAAAAGAGTGATCAATCCTA+GGG | + | chr6_3:9535939-9535958 | None:intergenic | 30.0% | |
| AAAAAAGAGTGATCAATCCT+AGG | + | chr6_3:9535940-9535959 | None:intergenic | 30.0% | |
| ! | TCGAAATCGGTAAAGTTTTT+CGG | + | chr6_3:9535982-9536001 | None:intergenic | 30.0% |
| !!! | CAAGCATTGTTTTTGAAGAA+TGG | + | chr6_3:9536150-9536169 | None:intergenic | 30.0% |
| !! | TCATGAATACTGTGTTGTTT+CGG | - | chr6_3:9536187-9536206 | Msa0938010:intron | 30.0% |
| ! | ACAAACCCATTTGCATTTTT+AGG | + | chr6_3:9536390-9536409 | None:intergenic | 30.0% |
| ! | TATGCTATGCTTTGTTCATT+TGG | - | chr6_3:9536543-9536562 | Msa0938010:intron | 30.0% |
| ! | ATGCTATGCTTTGTTCATTT+GGG | - | chr6_3:9536544-9536563 | Msa0938010:intron | 30.0% |
| !! | TCATGAAAACTGTGTTGTTT+CGG | - | chr6_3:9536635-9536654 | Msa0938010:intron | 30.0% |
| GGAATCATGATGAATATCTT+AGG | - | chr6_3:9536925-9536944 | Msa0938010:intron | 30.0% | |
| TCATGATGAATATCTTAGGT+TGG | - | chr6_3:9536929-9536948 | Msa0938010:intron | 30.0% | |
| ATGTTTAATCCAGTTATGGT+TGG | - | chr6_3:9537009-9537028 | Msa0938010:intron | 30.0% | |
| TGATTGACACAAAACATTCA+AGG | - | chr6_3:9537034-9537053 | Msa0938010:intron | 30.0% | |
| AACAAATAAGAGATGGATCT+TGG | - | chr6_3:9537203-9537222 | Msa0938010:intron | 30.0% | |
| ! | TATTGATGTGGGTTTTCTTT+TGG | - | chr6_3:9537251-9537270 | Msa0938010:CDS | 30.0% |
| GTCAAGAGAAAGCAAATTTA+CGG | - | chr6_3:9537292-9537311 | Msa0938010:intron | 30.0% | |
| GATGTGAAATTGTCTTAATG+AGG | + | chr6_3:9537332-9537351 | None:intergenic | 30.0% | |
| ! | TTCACATCCTTTTATGATGA+TGG | - | chr6_3:9537344-9537363 | Msa0938010:intron | 30.0% |
| ! | TCACATCCTTTTATGATGAT+GGG | - | chr6_3:9537345-9537364 | Msa0938010:intron | 30.0% |
| !!! | TTTTAAGTTTTCGACGATGT+CGG | - | chr6_3:9537446-9537465 | Msa0938010:CDS | 30.0% |
| !! | TTTTCTAGAGAAACACATCG+AGG | + | chr6_3:9534339-9534358 | None:intergenic | 35.0% |
| !! | TACTTTTTGTGATTGTGCTC+GGG | - | chr6_3:9534463-9534482 | Msa0938010:CDS | 35.0% |
| ! | ATTAGCCTCCAAAAAGAATG+AGG | + | chr6_3:9534524-9534543 | None:intergenic | 35.0% |
| CAAAAATCTACGTCCAAGAT+CGG | + | chr6_3:9534597-9534616 | None:intergenic | 35.0% | |
| ! | TCAAAGTGCTTGACGTATTA+AGG | - | chr6_3:9534617-9534636 | Msa0938010:CDS | 35.0% |
| !! | ACTAGATTCTAGTTCAATGG+TGG | - | chr6_3:9534722-9534741 | Msa0938010:CDS | 35.0% |
| TTTAACTAATTCACCTCCAG+TGG | + | chr6_3:9534774-9534793 | None:intergenic | 35.0% | |
| ! | TGGTCCTTGCTATGTTATTA+TGG | - | chr6_3:9534877-9534896 | Msa0938010:intron | 35.0% |
| TCTGCCATAATAACATAGCA+AGG | + | chr6_3:9534884-9534903 | None:intergenic | 35.0% | |
| TTAATGGCAGTTGTGATCAA+AGG | - | chr6_3:9535000-9535019 | Msa0938010:intron | 35.0% | |
| TTGAAAACCAAGGAGAAACA+TGG | + | chr6_3:9535029-9535048 | None:intergenic | 35.0% | |
| TAGTTTGACTGAAAAGTTGC+AGG | - | chr6_3:9535055-9535074 | Msa0938010:intron | 35.0% | |
| TGAAAAGTTGCAGGATTTCA+AGG | - | chr6_3:9535064-9535083 | Msa0938010:intron | 35.0% | |
| ! | AAAACTGTTGGCTACCTTAT+TGG | + | chr6_3:9535111-9535130 | None:intergenic | 35.0% |
| !! | AGATGGTGGGGAATAATTTA+AGG | + | chr6_3:9535334-9535353 | None:intergenic | 35.0% |
| AACATTGCTCATACCGATAA+AGG | - | chr6_3:9535436-9535455 | Msa0938010:intron | 35.0% | |
| AGTGTTCAGCTTACCTTTAT+CGG | + | chr6_3:9535452-9535471 | None:intergenic | 35.0% | |
| AATGTGTTTGTTTACACGGT+AGG | - | chr6_3:9535549-9535568 | Msa0938010:intron | 35.0% | |
| TGGTTAACATTGTGTTTCGT+TGG | + | chr6_3:9535673-9535692 | None:intergenic | 35.0% | |
| !! | ATAGGTCTTTTTCATGGGTT+GGG | + | chr6_3:9535912-9535931 | None:intergenic | 35.0% |
| !! | AATAGGTCTTTTTCATGGGT+TGG | + | chr6_3:9535913-9535932 | None:intergenic | 35.0% |
| GATCAATCCTAGGGTTAAAT+AGG | + | chr6_3:9535930-9535949 | None:intergenic | 35.0% | |
| !!! | CTCTCTTTTTTCGTAACTTC+TGG | - | chr6_3:9536044-9536063 | Msa0938010:intron | 35.0% |
| CACCTTTGTAGTATCATCTA+GGG | - | chr6_3:9536084-9536103 | Msa0938010:intron | 35.0% | |
| AACCCTAGATGATACTACAA+AGG | + | chr6_3:9536089-9536108 | None:intergenic | 35.0% | |
| ACAGAAAATAGAATGAAGGG+TGG | + | chr6_3:9536455-9536474 | None:intergenic | 35.0% | |
| TGATGTTTCTTTATGTGCAG+AGG | - | chr6_3:9536904-9536923 | Msa0938010:intron | 35.0% | |
| TCAATCAATCCAACCATAAC+TGG | + | chr6_3:9537021-9537040 | None:intergenic | 35.0% | |
| ! | CTTCAGAAACGTATTGATGT+GGG | - | chr6_3:9537240-9537259 | Msa0938010:CDS | 35.0% |
| ! | TTGACATTTTGTTCATCTGG+TGG | + | chr6_3:9537390-9537409 | None:intergenic | 35.0% |
| !!! | GTCAATTTTAGGGTTTTTGC+AGG | - | chr6_3:9537405-9537424 | Msa0938010:CDS | 35.0% |
| !! | TTTAAGTTTTCGACGATGTC+GGG | - | chr6_3:9537447-9537466 | Msa0938010:CDS | 35.0% |
| CATAACACTCGACTGTTAAA+GGG | + | chr6_3:9537500-9537519 | None:intergenic | 35.0% | |
| TCATAACACTCGACTGTTAA+AGG | + | chr6_3:9537501-9537520 | None:intergenic | 35.0% | |
| TATAAGATTTCCGGTGGAGT+TGG | - | chr6_3:9534299-9534318 | Msa0938010:CDS | 40.0% | |
| GCTTAGTGGTTGTATCATGT+CGG | - | chr6_3:9534361-9534380 | Msa0938010:CDS | 40.0% | |
| ! | GTGTCATGCCTCATTCTTTT+TGG | - | chr6_3:9534513-9534532 | Msa0938010:CDS | 40.0% |
| ! | TCATGCCTCATTCTTTTTGG+AGG | - | chr6_3:9534516-9534535 | Msa0938010:CDS | 40.0% |
| AAGTGCTTGACGTATTAAGG+AGG | - | chr6_3:9534620-9534639 | Msa0938010:CDS | 40.0% | |
| AGTGCTTGACGTATTAAGGA+GGG | - | chr6_3:9534621-9534640 | Msa0938010:CDS | 40.0% | |
| TAACATGTCTTGGTTTCCAC+TGG | - | chr6_3:9534755-9534774 | Msa0938010:CDS | 40.0% | |
| TATGGGACAATCTCATTGAG+TGG | - | chr6_3:9534805-9534824 | Msa0938010:CDS | 40.0% | |
| ATGGGACAATCTCATTGAGT+GGG | - | chr6_3:9534806-9534825 | Msa0938010:CDS | 40.0% | |
| TCTCATTGAGTGGGTGAAAT+AGG | - | chr6_3:9534815-9534834 | Msa0938010:CDS | 40.0% | |
| GTTATTATGGCAGAGATGTG+AGG | - | chr6_3:9534890-9534909 | Msa0938010:intron | 40.0% | |
| ! | AGAGATGTGAGGTATCTTGA+AGG | - | chr6_3:9534901-9534920 | Msa0938010:intron | 40.0% |
| ! | GAGATGTGAGGTATCTTGAA+GGG | - | chr6_3:9534902-9534921 | Msa0938010:intron | 40.0% |
| ! | AGATGTGAGGTATCTTGAAG+GGG | - | chr6_3:9534903-9534922 | Msa0938010:intron | 40.0% |
| TGTGTTGCACAAAGCCAATA+AGG | - | chr6_3:9535094-9535113 | Msa0938010:intron | 40.0% | |
| GGTCAAACTTGCAAAACTGT+TGG | + | chr6_3:9535123-9535142 | None:intergenic | 40.0% | |
| TTCAACCGACAAATACCGAT+AGG | - | chr6_3:9535242-9535261 | Msa0938010:intron | 40.0% | |
| ACAAATCAAGAGAGATGGTG+GGG | + | chr6_3:9535346-9535365 | None:intergenic | 40.0% | |
| CACAAATCAAGAGAGATGGT+GGG | + | chr6_3:9535347-9535366 | None:intergenic | 40.0% | |
| TGGCCAGGAAGAAATTTGAT+TGG | - | chr6_3:9535365-9535384 | Msa0938010:intron | 40.0% | |
| ! | ATGTTGGCTAAAACGCATGT+TGG | + | chr6_3:9535582-9535601 | None:intergenic | 40.0% |
| AGATGATACTACAAAGGTGG+TGG | + | chr6_3:9536083-9536102 | None:intergenic | 40.0% | |
| CCTAGATGATACTACAAAGG+TGG | + | chr6_3:9536086-9536105 | None:intergenic | 40.0% | |
| CCACCTTTGTAGTATCATCT+AGG | - | chr6_3:9536083-9536102 | Msa0938010:intron | 40.0% | |
| !! | ATCTTAGGTTGGAATGTCAC+AGG | - | chr6_3:9536940-9536959 | Msa0938010:intron | 40.0% |
| GTCACAGGAATTAATCAACC+AGG | - | chr6_3:9536955-9536974 | Msa0938010:intron | 40.0% | |
| TGAATGCTTTCAGATTGTCC+TGG | + | chr6_3:9536976-9536995 | None:intergenic | 40.0% | |
| AAAACATTCAAGGCTCACTG+AGG | - | chr6_3:9537044-9537063 | Msa0938010:intron | 40.0% | |
| CTCACTGAGGAAAAGGTTAA+AGG | - | chr6_3:9537057-9537076 | Msa0938010:intron | 40.0% | |
| CTGAGGAAAAGGTTAAAGGA+TGG | - | chr6_3:9537061-9537080 | Msa0938010:intron | 40.0% | |
| AGGAAAAGGTTAAAGGATGG+TGG | - | chr6_3:9537064-9537083 | Msa0938010:intron | 40.0% | |
| !! | AAAGGTTAAAGGATGGTGGA+AGG | - | chr6_3:9537068-9537087 | Msa0938010:intron | 40.0% |
| AAGAGATGGATCTTGGTTGA+AGG | - | chr6_3:9537210-9537229 | Msa0938010:CDS | 40.0% | |
| ! | GCTTCAGAAACGTATTGATG+TGG | - | chr6_3:9537239-9537258 | Msa0938010:CDS | 40.0% |
| GCTTTCTCTTGACTACAATC+TGG | + | chr6_3:9537285-9537304 | None:intergenic | 40.0% | |
| TTTGATGTGCAGTGTGTCGA+TGG | - | chr6_3:9534427-9534446 | Msa0938010:CDS | 45.0% | |
| ! | AGAGATTTGGGTGATGGTTG+AGG | - | chr6_3:9534490-9534509 | Msa0938010:CDS | 45.0% |
| ! | GAGATTTGGGTGATGGTTGA+GGG | - | chr6_3:9534491-9534510 | Msa0938010:CDS | 45.0% |
| !! | TTGAAAGGTGTTGTGTCTCG+TGG | - | chr6_3:9534568-9534587 | Msa0938010:CDS | 45.0% |
| TAGTTCAATGGTGGTTGACG+AGG | - | chr6_3:9534731-9534750 | Msa0938010:CDS | 45.0% | |
| TTGACGAGGCTAACATGTCT+TGG | - | chr6_3:9534745-9534764 | Msa0938010:CDS | 45.0% | |
| GTGGGTGAAATAGGTTTGCA+TGG | - | chr6_3:9534824-9534843 | Msa0938010:CDS | 45.0% | |
| ! | AAGGCATCCATGTTTCTCCT+TGG | - | chr6_3:9535019-9535038 | Msa0938010:intron | 45.0% |
| CCACAAATCAAGAGAGATGG+TGG | + | chr6_3:9535348-9535367 | None:intergenic | 45.0% | |
| ! | CCACCATCTCTCTTGATTTG+TGG | - | chr6_3:9535345-9535364 | Msa0938010:intron | 45.0% |
| TGGCCACAAATCAAGAGAGA+TGG | + | chr6_3:9535351-9535370 | None:intergenic | 45.0% | |
| !! | ATCTCTCTTGATTTGTGGCC+AGG | - | chr6_3:9535350-9535369 | Msa0938010:intron | 45.0% |
| AATTCGGGACAACGTTTCTC+TGG | - | chr6_3:9535407-9535426 | Msa0938010:intron | 45.0% | |
| TGGCTAAAACGCATGTTGGT+GGG | + | chr6_3:9535578-9535597 | None:intergenic | 45.0% | |
| TTGGCTAAAACGCATGTTGG+TGG | + | chr6_3:9535579-9535598 | None:intergenic | 45.0% | |
| ATTCAAAATTGCGCGTCCCA+AGG | + | chr6_3:9535642-9535661 | None:intergenic | 45.0% | |
| !!! | TCTTTTTCATGGGTTGGGCT+AGG | + | chr6_3:9535907-9535926 | None:intergenic | 45.0% |
| ! | GAGTAGAAGTGCGTCGAAAT+CGG | + | chr6_3:9535995-9536014 | None:intergenic | 45.0% |
| TTCAAGGCTCACTGAGGAAA+AGG | - | chr6_3:9537050-9537069 | Msa0938010:intron | 45.0% | |
| !! | GTTAAAGGATGGTGGAAGGA+GGG | - | chr6_3:9537072-9537091 | Msa0938010:intron | 45.0% |
| !! | TTAAAGGATGGTGGAAGGAG+GGG | - | chr6_3:9537073-9537092 | Msa0938010:intron | 45.0% |
| AGTAGGCTGGATAGATGTTC+CGG | - | chr6_3:9537101-9537120 | Msa0938010:intron | 45.0% | |
| TTCCAATGGCGAGAAAAGTG+AGG | - | chr6_3:9537131-9537150 | Msa0938010:intron | 45.0% | |
| TCCAATGGCGAGAAAAGTGA+GGG | - | chr6_3:9537132-9537151 | Msa0938010:intron | 45.0% | |
| TGCTCGGGTGTCAGAGATTT+GGG | - | chr6_3:9534478-9534497 | Msa0938010:CDS | 50.0% | |
| GGTGTCAGAGATTTGGGTGA+TGG | - | chr6_3:9534484-9534503 | Msa0938010:CDS | 50.0% | |
| !! | AAAGGTGTTGTGTCTCGTGG+AGG | - | chr6_3:9534571-9534590 | Msa0938010:CDS | 50.0% |
| TTAAGGAGGGCTCGAACTTG+TGG | - | chr6_3:9534634-9534653 | Msa0938010:CDS | 50.0% | |
| TAAGGAGGGCTCGAACTTGT+GGG | - | chr6_3:9534635-9534654 | Msa0938010:CDS | 50.0% | |
| CATGTCTTGGTTTCCACTGG+AGG | - | chr6_3:9534758-9534777 | Msa0938010:CDS | 50.0% | |
| !! | GGTTAAAGGATGGTGGAAGG+AGG | - | chr6_3:9537071-9537090 | Msa0938010:intron | 50.0% |
| !! | TAAAGGATGGTGGAAGGAGG+GGG | - | chr6_3:9537074-9537093 | Msa0938010:intron | 50.0% |
| GTTCCGGAAACACGTTCCAA+TGG | - | chr6_3:9537117-9537136 | Msa0938010:intron | 50.0% | |
| TCGCCATTGGAACGTGTTTC+CGG | + | chr6_3:9537123-9537142 | None:intergenic | 50.0% | |
| !! | TCCCTCACTTTTCTCGCCAT+TGG | + | chr6_3:9537136-9537155 | None:intergenic | 50.0% |
| TGGCGAGAAAAGTGAGGGAA+TGG | - | chr6_3:9537137-9537156 | Msa0938010:intron | 50.0% | |
| ACGATGTCGGGATTAGAGAC+AGG | - | chr6_3:9537459-9537478 | Msa0938010:CDS | 50.0% | |
| ! | GATTTCCGGTGGAGTTGGTC+TGG | - | chr6_3:9534304-9534323 | Msa0938010:CDS | 55.0% |
| CTAGACCAGACCAACTCCAC+CGG | + | chr6_3:9534312-9534331 | None:intergenic | 55.0% | |
| GTGCTCGGGTGTCAGAGATT+TGG | - | chr6_3:9534477-9534496 | Msa0938010:CDS | 55.0% | |
| AAGGAGGGCTCGAACTTGTG+GGG | - | chr6_3:9534636-9534655 | Msa0938010:CDS | 55.0% | |
| TGGAAGGAGGGGGACAAAGT+AGG | - | chr6_3:9537084-9537103 | Msa0938010:intron | 55.0% | |
| GTGAGGGAATGGTATTCGCG+TGG | - | chr6_3:9537148-9537167 | Msa0938010:intron | 55.0% | |
| TGTCTCGTGGAGGCCGATCT+TGG | - | chr6_3:9534581-9534600 | Msa0938010:CDS | 60.0% | |
| AGGAGGGGGACAAAGTAGGC+TGG | - | chr6_3:9537088-9537107 | Msa0938010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 9534273 | 9537536 | 9534273 | ID=Msa0938010;Name=Msa0938010 |
| chr6_3 | mRNA | 9534273 | 9537536 | 9534273 | ID=Msa0938010-mRNA-1;Parent=Msa0938010;Name=Msa0938010-mRNA-1;_AED=0.35;_eAED=0.38;_QI=0|0|0|0.33|1|1|3|0|277 |
| chr6_3 | exon | 9537384 | 9537536 | 9537384 | ID=Msa0938010-mRNA-1:exon:3093;Parent=Msa0938010-mRNA-1 |
| chr6_3 | exon | 9537204 | 9537271 | 9537204 | ID=Msa0938010-mRNA-1:exon:3092;Parent=Msa0938010-mRNA-1 |
| chr6_3 | exon | 9534273 | 9534885 | 9534273 | ID=Msa0938010-mRNA-1:exon:3091;Parent=Msa0938010-mRNA-1 |
| chr6_3 | CDS | 9537384 | 9537536 | 9537384 | ID=Msa0938010-mRNA-1:cds;Parent=Msa0938010-mRNA-1 |
| chr6_3 | CDS | 9537204 | 9537271 | 9537204 | ID=Msa0938010-mRNA-1:cds;Parent=Msa0938010-mRNA-1 |
| chr6_3 | CDS | 9534273 | 9534885 | 9534273 | ID=Msa0938010-mRNA-1:cds;Parent=Msa0938010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
