AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694990 MtrunA17_Chr4g0046111 94.118 578 4 4 1 549 1 577 0.0 1098
Msa0694990 MtrunA17_Chr4g0002221 53.448 116 34 2 78 192 21 117 1.21e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694990 AT2G34040.3 63.923 571 166 5 1 549 1 553 0.0 686
Msa0694990 AT2G34040.1 63.923 571 166 5 1 549 1 553 0.0 686
Msa0694990 AT1G29030.1 62.921 534 158 8 1 508 1 520 0.0 658
Msa0694990 AT1G29030.2 60.300 534 150 8 1 508 1 498 0.0 619
Msa0694990 AT2G34040.2 65.596 436 123 3 1 415 1 430 0.0 571
Msa0694990 AT3G19515.2 44.922 256 136 3 216 466 76 331 4.67e-60 213
Msa0694990 AT3G19515.2 35.338 133 63 1 12 121 1 133 2.03e-18 89.7
Msa0694990 AT1G23935.1 35.678 398 180 12 80 466 38 370 3.81e-54 198
Msa0694990 AT1G23935.3 35.474 327 148 10 80 403 38 304 2.21e-42 163
Msa0694990 AT1G23935.2 35.474 327 148 10 80 403 38 304 2.26e-42 163

Find 146 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTGTTCACTTTGTTTC+AGG 0.173385 4_4:+64392591 Msa0694990:five_prime_UTR
CTGAAGAGTTTGAGCCTATT+TGG 0.180255 4_4:+64395070 Msa0694990:CDS
TATAGAATTTCGAATGTTTA+TGG 0.180281 4_4:+64395042 Msa0694990:CDS
TGGAGCAAGGGGCCGGGGCC+AGG 0.244195 4_4:+64399829 Msa0694990:CDS
AAGTTCTTTCCTGAACTTTC+CGG 0.262685 4_4:+64393006 Msa0694990:CDS
ATAAGAGAATCAACCTTTCT+TGG 0.268861 4_4:+64399412 Msa0694990:CDS
TGTGGTTACAAAATTGTTAC+TGG 0.293298 4_4:+64398060 Msa0694990:CDS
TTGAAGAAGGGTCGAGGTTC+TGG 0.305212 4_4:+64399722 Msa0694990:CDS
ATTATTGTACTAAAATTCTT+TGG 0.311546 4_4:+64399987 Msa0694990:three_prime_UTR
GTGTCGTTCCATTTCCTCTT+GGG 0.311853 4_4:-64394869 None:intergenic
GCCGGGGCCAGGGCCAAGGC+TGG 0.314504 4_4:+64399840 Msa0694990:CDS
CGGGGCCAGGGCCAAGGCTG+GGG 0.320985 4_4:+64399842 Msa0694990:CDS
ACTCAATACTCATCTTGATT+TGG 0.327382 4_4:+64393035 Msa0694990:CDS
AAGAAGTCCTATTTGTATTC+CGG 0.329262 4_4:-64399963 None:intergenic
TGTTATTCCTGCCAGCTTCC+TGG 0.336157 4_4:+64396132 Msa0694990:intron
CTTCTTCAATGCAATATTGT+TGG 0.340511 4_4:-64399708 None:intergenic
CAAATAGGCTCAAACTCTTC+AGG 0.344533 4_4:-64395069 None:intergenic
CCGGGGCCAGGGCCAAGGCT+GGG 0.349630 4_4:+64399841 Msa0694990:CDS
AGAGGTGGAGCAAGGGGCCG+GGG 0.351067 4_4:+64399824 Msa0694990:CDS
TTTGTAACCACATAAACTAT+TGG 0.362776 4_4:-64398049 None:intergenic
GGCTGAAAACAACAAATCTA+TGG 0.365544 4_4:+64399028 Msa0694990:CDS
CCCAGCCTTGGCCCTGGCCC+CGG 0.369499 4_4:-64399841 None:intergenic
CAGAGTTTAGAAGATGTAAC+TGG 0.369726 4_4:+64395019 Msa0694990:intron
CATCGTCAAAATATTATTGC+AGG 0.371200 4_4:-64399218 None:intergenic
AAAGTACTTACCACAACAAT+TGG 0.378420 4_4:-64395426 None:intergenic
ATCGAGAAGCTCTACCAATA+TGG 0.380527 4_4:+64392776 Msa0694990:CDS
AGAGCACTAGGCGGATTATC+TGG 0.382189 4_4:+64399770 Msa0694990:CDS
TGTGTCGTTCCATTTCCTCT+TGG 0.385006 4_4:-64394870 None:intergenic
GGCCAAGGCTGGGGTGGTCG+CGG 0.386215 4_4:+64399851 Msa0694990:CDS
GGCTGGGGTGGTCGCGGAAG+AGG 0.390669 4_4:+64399857 Msa0694990:CDS
ATAGATAAGATCTAATTTCA+TGG 0.394407 4_4:+64399932 Msa0694990:three_prime_UTR
TTCAACAGTTCAGCTTTGAT+AGG 0.395370 4_4:-64394844 None:intergenic
TTTAACCTGAGATTTGTCTT+TGG 0.398392 4_4:-64392816 None:intergenic
AAGGATACACCTGAGAATAT+TGG 0.399203 4_4:+64393248 Msa0694990:intron
TTCCGCGACCACCCCAGCCT+TGG 0.399520 4_4:-64399853 None:intergenic
AGGGGCCGGGGCCAGGGCCA+AGG 0.400528 4_4:+64399836 Msa0694990:CDS
GTTGAAGCCCCAAGAGGAAA+TGG 0.404679 4_4:+64394861 Msa0694990:CDS
AGTTGAGTTGCTCGCCATAT+TGG 0.407050 4_4:-64392790 None:intergenic
TAGAGGTGGAGCAAGGGGCC+GGG 0.407788 4_4:+64399823 Msa0694990:CDS
TCTTGTGCAACTTCTTTCCT+CGG 0.408538 4_4:+64393286 Msa0694990:CDS
TTCAGCAACTGAACAATAGA+AGG 0.408687 4_4:-64396234 None:intergenic
CTCGATGTAAGCAGCTTCTT+CGG 0.414250 4_4:-64392759 None:intergenic
AATATTGTTGGATCCATTGC+CGG 0.421230 4_4:-64399696 None:intergenic
GTAGAGGTGGAGCAAGGGGC+CGG 0.423455 4_4:+64399822 Msa0694990:CDS
AGTGCAAGACCGGAAAGTTC+AGG 0.423488 4_4:-64393015 None:intergenic
AGAGGAAGTGGAAGAGGTAG+AGG 0.424791 4_4:+64399875 Msa0694990:CDS
GGAGCAAGGGGCCGGGGCCA+GGG 0.425022 4_4:+64399830 Msa0694990:CDS
TCGGAAGGTTCAGTAGTCAT+TGG 0.427839 4_4:-64392740 None:intergenic
GGCCAGGGCCAAGGCTGGGG+TGG 0.428688 4_4:+64399845 Msa0694990:CDS
TGTAAAATTCATCTCTTCTC+CGG 0.428906 4_4:-64397883 None:intergenic
TGCGGTAGTTGATGCAGATT+TGG 0.429378 4_4:-64399445 None:intergenic
GACTGTACCGGAATACAAAT+AGG 0.429536 4_4:+64399956 Msa0694990:three_prime_UTR
CATAAACTATTGGTGGCATT+AGG 0.430397 4_4:-64398039 None:intergenic
GGAGGAAGAGGCAGAGTCTC+TGG 0.433047 4_4:+64399794 Msa0694990:CDS
TTTGAGCCTATTTGGAGAAA+AGG 0.433300 4_4:+64395078 Msa0694990:CDS
AGAGTCTCTGGTGGAGGTAG+AGG 0.435438 4_4:+64399806 Msa0694990:CDS
TACATGACTTGGAAGAAAAC+CGG 0.437540 4_4:+64397864 Msa0694990:CDS
GACCACCCCAGCCTTGGCCC+TGG 0.437792 4_4:-64399847 None:intergenic
GAGGTAGAGGTAGAGGGTAT+TGG 0.448376 4_4:+64399888 Msa0694990:CDS
TGGTTGCTTCTTTCCAAGAA+AGG 0.448903 4_4:-64399425 None:intergenic
AGTGGAAGAGGTAGAGGTAG+AGG 0.449138 4_4:+64399881 Msa0694990:CDS
TTACTGGTCAGCCATCTGAT+AGG 0.452743 4_4:+64398076 Msa0694990:CDS
TGCTAAAACTGATGAAGAAA+AGG 0.453582 4_4:+64399055 Msa0694990:CDS
TGATTCCCGCTTGCATCAAA+AGG 0.455735 4_4:-64400112 None:intergenic
CAACAATATTGCATTGAAGA+AGG 0.456268 4_4:+64399709 Msa0694990:CDS
GGAAAGAACTTGAAGAACTT+AGG 0.456756 4_4:-64392994 None:intergenic
AACATTCTACATATCAGAAA+TGG 0.457489 4_4:-64400206 None:intergenic
ATTTCATCACCTAGCTCAAA+AGG 0.458193 4_4:+64397929 Msa0694990:CDS
TCTGATGTCTCTGCTGAGGC+AGG 0.468867 4_4:+64393433 Msa0694990:CDS
AATGCCACCAATAGTTTATG+TGG 0.470729 4_4:+64398042 Msa0694990:CDS
CGCGGAAGAGGAAGTGGAAG+AGG 0.472771 4_4:+64399869 Msa0694990:CDS
GGTGGTCGCGGAAGAGGAAG+TGG 0.474401 4_4:+64399863 Msa0694990:CDS
TAATGTTGAAGAGCAAAATT+CGG 0.475477 4_4:+64394689 Msa0694990:CDS
CAACTACCGCACCAGCTGTT+GGG 0.480221 4_4:+64399457 Msa0694990:CDS
ATCAAACAGATCATATTCAT+AGG 0.483162 4_4:+64395376 Msa0694990:CDS
AGCTCTTCCATACGCTCAGC+TGG 0.487308 4_4:-64395103 None:intergenic
TTTACTTCTGCAGAGCGAAA+CGG 0.489418 4_4:+64399663 Msa0694990:intron
TAGTTTCTTGATTGTAGCCC+GGG 0.492094 4_4:-64398994 None:intergenic
CTTGTGCAACTTCTTTCCTC+GGG 0.493032 4_4:+64393287 Msa0694990:CDS
GTGGAGGTAGAGGTGGAGCA+AGG 0.494022 4_4:+64399816 Msa0694990:CDS
GGATGACCTTAGTCGTGAAA+AGG 0.497612 4_4:+64394710 Msa0694990:CDS
GTACTAAAATTCTTTGGCAG+AGG 0.500387 4_4:+64399993 Msa0694990:three_prime_UTR
GATCCATTGCCGGTAGTAGC+CGG 0.501494 4_4:-64399686 None:intergenic
GGATTATCTGGTGGAGGAAG+AGG 0.501991 4_4:+64399782 Msa0694990:CDS
ATGAGTATTGAGTGCAAGAC+CGG 0.502685 4_4:-64393025 None:intergenic
TGACAAGTGGATTTATATGA+AGG 0.503577 4_4:+64400183 Msa0694990:three_prime_UTR
TTCTATTGTTCAGTTGCTGA+AGG 0.506926 4_4:+64396236 Msa0694990:CDS
GTAACCACATAAACTATTGG+TGG 0.507469 4_4:-64398046 None:intergenic
ACTTTGTTTAAGCACATTCG+TGG 0.507835 4_4:+64394666 Msa0694990:CDS
GAGCTGCTTGGAATCATTGA+AGG 0.510702 4_4:+64395121 Msa0694990:CDS
TCAACTACCGCACCAGCTGT+TGG 0.511656 4_4:+64399456 Msa0694990:CDS
ACTGAACATCTTATGCCCCT+TGG 0.512771 4_4:+64400139 Msa0694990:three_prime_UTR
GCGAAACGGCCGGCTACTAC+CGG 0.515305 4_4:+64399677 Msa0694990:CDS
GTCTCTGGTGGAGGTAGAGG+TGG 0.515825 4_4:+64399809 Msa0694990:CDS
TGGAGGTAGAGGTGGAGCAA+GGG 0.517601 4_4:+64399817 Msa0694990:CDS
CAACTTGTCAATAGAGCACT+AGG 0.521699 4_4:+64399758 Msa0694990:CDS
TTAGTTTCTTGATTGTAGCC+CGG 0.527233 4_4:-64398995 None:intergenic
TGTCGTTCCATTTCCTCTTG+GGG 0.527654 4_4:-64394868 None:intergenic
AAAGGCTCCAGCTGAGCGTA+TGG 0.527823 4_4:+64395096 Msa0694990:CDS
CTCTTATCTCCAATAAAAGA+AGG 0.529752 4_4:-64399396 None:intergenic
GAGCGTATGGAAGAGCTGCT+TGG 0.531459 4_4:+64395109 Msa0694990:CDS
CAAGAAACTAACTCAAGGAA+TGG 0.535136 4_4:+64399007 Msa0694990:CDS
AACAATATTGCATTGAAGAA+GGG 0.536121 4_4:+64399710 Msa0694990:CDS
CGGCCGGCTACTACCGGCAA+TGG 0.538902 4_4:+64399683 Msa0694990:CDS
TCAACAGTTCAGCTTTGATA+GGG 0.540300 4_4:-64394843 None:intergenic
GGTCAGCCATCTGATAGGCT+TGG 0.540430 4_4:+64398081 Msa0694990:CDS
TATTTCATAATGCTTTAAGC+GGG 0.545838 4_4:-64400230 None:intergenic
CATGGCACTTCCAATTGTTG+TGG 0.547852 4_4:+64395416 Msa0694990:CDS
TAATTTCATGGAGACTGTAC+CGG 0.550058 4_4:+64399944 Msa0694990:three_prime_UTR
CTCTTCCAAAGACAAATCTC+AGG 0.550702 4_4:+64392811 Msa0694990:CDS
CAGAACGTCAAGGATTATCA+AGG 0.554085 4_4:+64392913 Msa0694990:intron
AAAATACAATACCCAACAGC+TGG 0.554529 4_4:-64399468 None:intergenic
GGAGGTAGAGGTGGAGCAAG+GGG 0.554761 4_4:+64399818 Msa0694990:CDS
AGAGGCAGAGTCTCTGGTGG+AGG 0.557524 4_4:+64399800 Msa0694990:CDS
GCATGTAATGTAATGACAAG+TGG 0.567871 4_4:+64400170 Msa0694990:three_prime_UTR
GGAGCGTGATGCTGTGCATA+AGG 0.570343 4_4:+64393409 Msa0694990:CDS
ATATTTCATAATGCTTTAAG+CGG 0.577716 4_4:-64400231 None:intergenic
ATGTAAGCAGCTTCTTCGGA+AGG 0.580643 4_4:-64392755 None:intergenic
AAAACGTTGAGGAGTTCACC+CGG 0.582162 4_4:+64398976 Msa0694990:CDS
GACCTGAAACAAAGTGAACA+AGG 0.591509 4_4:-64392593 None:intergenic
GTGGAAGAGGTAGAGGTAGA+GGG 0.593366 4_4:+64399882 Msa0694990:CDS
ATTGCATTGAAGAAGGGTCG+AGG 0.602060 4_4:+64399716 Msa0694990:CDS
GAATCTTGTGGTGTTGTGAA+AGG 0.604189 4_4:-64396198 None:intergenic
ACAATCAAGAAACTAACTCA+AGG 0.609790 4_4:+64399002 Msa0694990:CDS
CAATTGGAAGTGCCATGTGA+AGG 0.614103 4_4:-64395410 None:intergenic
AAATGAGTAATCACATTGAA+CGG 0.615862 4_4:-64395163 None:intergenic
AAGAAGGGTCGAGGTTCTGG+TGG 0.621072 4_4:+64399725 Msa0694990:CDS
TGAAAGGTGAAAACTCTGCA+AGG 0.622969 4_4:-64396182 None:intergenic
CTAGGCGGATTATCTGGTGG+AGG 0.626238 4_4:+64399776 Msa0694990:CDS
TTACATGCATACATAACCAA+GGG 0.626427 4_4:-64400155 None:intergenic
CTGCTGAGGCAGGATGTGAA+AGG 0.630646 4_4:+64393443 Msa0694990:CDS
ACAATACCCAACAGCTGGTG+CGG 0.630788 4_4:-64399463 None:intergenic
ATTACATGCATACATAACCA+AGG 0.636612 4_4:-64400156 None:intergenic
GTTGATATCATGCCTTCACA+TGG 0.637100 4_4:+64395398 Msa0694990:CDS
AGGCTCTGATGTCTCTGCTG+AGG 0.641155 4_4:+64393429 Msa0694990:CDS
TCTTCTCCAAGCCTATCAGA+TGG 0.644984 4_4:-64398087 None:intergenic
GGAAGAGGCAGAGTCTCTGG+TGG 0.645079 4_4:+64399797 Msa0694990:CDS
AGCATTTGTCGTGAATCTTG+TGG 0.650972 4_4:-64396210 None:intergenic
CATTCTACAGAAACAAACTT+CGG 0.652036 4_4:-64400066 None:intergenic
GCACTAGGCGGATTATCTGG+TGG 0.669386 4_4:+64399773 Msa0694990:CDS
TGAACTGTTGAAGCCCCAAG+AGG 0.674998 4_4:+64394855 Msa0694990:CDS
ACCTGAAACAAAGTGAACAA+GGG 0.682642 4_4:-64392592 None:intergenic
CTTCTGCAGAGCGAAACGGC+CGG 0.693152 4_4:+64399667 Msa0694990:intron
AAACGTTGAGGAGTTCACCC+GGG 0.696711 4_4:+64398977 Msa0694990:CDS
TACATGCATACATAACCAAG+GGG 0.720060 4_4:-64400154 None:intergenic
CTTGTCAATAGAGCACTAGG+CGG 0.775828 4_4:+64399761 Msa0694990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTATATAGAAGAT+AGG - chr4_4:64394181-64394200 None:intergenic 10.0%
!! ATATAAAATAAATTAAAGAG+AGG + chr4_4:64394188-64394207 Msa0694990:intron 10.0%
!! TATAAAATAAATTAAAGAGA+GGG + chr4_4:64394189-64394208 Msa0694990:intron 10.0%
!!! ATAAAACTTTTAATCAATTA+TGG - chr4_4:64395683-64395702 None:intergenic 10.0%
!!! GCTAAATATTTTTTTAAAAA+AGG - chr4_4:64399265-64399284 None:intergenic 10.0%
!!! TTCGTTTTTTCATTTATTTA+GGG + chr4_4:64392846-64392865 Msa0694990:intron 15.0%
!! TTTCAACTTTATTCTAAATT+AGG + chr4_4:64392876-64392895 Msa0694990:intron 15.0%
!! TTCAACTTTATTCTAAATTA+GGG + chr4_4:64392877-64392896 Msa0694990:intron 15.0%
!! TGATTACATTGAATTATTAT+CGG - chr4_4:64393111-64393130 None:intergenic 15.0%
!!! ATTTTTTTTAGATGAATTTG+TGG + chr4_4:64393388-64393407 Msa0694990:intron 15.0%
!!! TATAAATTTTGTTAGAGATA+AGG + chr4_4:64394734-64394753 Msa0694990:CDS 15.0%
!!! GAATACATTTTTTATTAGAT+CGG - chr4_4:64394899-64394918 None:intergenic 15.0%
!!! TGAATATTTTGTAACATAAT+TGG + chr4_4:64394970-64394989 Msa0694990:intron 15.0%
!! AAAATAAAAAAACACAGAAA+AGG - chr4_4:64395196-64395215 None:intergenic 15.0%
!! TGTTATATTGTGTTTAAATT+TGG - chr4_4:64397781-64397800 None:intergenic 15.0%
!! AAATTTAAACACAATATAAC+AGG + chr4_4:64397780-64397799 Msa0694990:intron 15.0%
!! AATTTAAACACAATATAACA+GGG + chr4_4:64397781-64397800 Msa0694990:intron 15.0%
!! AATAATTAAAAGATCAAGAA+GGG - chr4_4:64399334-64399353 None:intergenic 15.0%
!! ATTATTGTACTAAAATTCTT+TGG + chr4_4:64399987-64400006 Msa0694990:three_prime_UTR 15.0%
!!! CTTCGTTTTTTCATTTATTT+AGG + chr4_4:64392845-64392864 Msa0694990:intron 20.0%
!! ATGTCAATTATAGAAGATAT+TGG + chr4_4:64393481-64393500 Msa0694990:intron 20.0%
!!! AATCTTTTTCTTAAGATCAA+AGG + chr4_4:64393667-64393686 Msa0694990:intron 20.0%
!!! ACATAATTCTAAAATGTTTG+AGG - chr4_4:64393736-64393755 None:intergenic 20.0%
!!! ATTTTATATAGAAGATAGGT+TGG - chr4_4:64394177-64394196 None:intergenic 20.0%
!!! ATTGTTTTTGTTGAAGATAT+TGG + chr4_4:64394273-64394292 Msa0694990:intron 20.0%
!! TACAAGAATGTGATTAATTA+TGG + chr4_4:64394483-64394502 Msa0694990:intron 20.0%
!! TTCATAATTACACTACTATA+AGG - chr4_4:64394630-64394649 None:intergenic 20.0%
!! TCTAAATGTCTTCAATATAT+AGG + chr4_4:64394816-64394835 Msa0694990:intron 20.0%
!! TATAGAATTTCGAATGTTTA+TGG + chr4_4:64395042-64395061 Msa0694990:CDS 20.0%
!!! TTATTTAACTGATGATTTGT+AGG + chr4_4:64395341-64395360 Msa0694990:intron 20.0%
!! AAAAAGTAACAATAAGTTTG+TGG + chr4_4:64395738-64395757 Msa0694990:intron 20.0%
!!! ATATCTATGATGATTTTTAC+TGG + chr4_4:64396013-64396032 Msa0694990:intron 20.0%
!! GGTAAACATTTCTTAAAAAA+TGG + chr4_4:64396257-64396276 Msa0694990:intron 20.0%
!! CTATGAATATTAACAATCAA+AGG + chr4_4:64396426-64396445 Msa0694990:intron 20.0%
!!! GAAATCATAACTGATTTTAT+TGG - chr4_4:64396792-64396811 None:intergenic 20.0%
!!! TTAGTTTTTTCATGAAAAAC+CGG + chr4_4:64396861-64396880 Msa0694990:intron 20.0%
!! GTAACAATTTAATACATAAC+TGG - chr4_4:64397656-64397675 None:intergenic 20.0%
!!! ATTGATTTGAAATTAAAGAG+TGG + chr4_4:64397716-64397735 Msa0694990:intron 20.0%
!!! TATTTTTACTGGTCTAAAAA+AGG - chr4_4:64397959-64397978 None:intergenic 20.0%
!!! ATTTAGGATAAAAAATGTTG+AGG + chr4_4:64398239-64398258 Msa0694990:intron 20.0%
!!! TTTAGGATAAAAAATGTTGA+GGG + chr4_4:64398240-64398259 Msa0694990:intron 20.0%
!! TTGTAATAAAATTTCAGTTC+AGG + chr4_4:64398688-64398707 Msa0694990:intron 20.0%
!! TAATTGTTATGTTACATTTC+TGG + chr4_4:64398925-64398944 Msa0694990:intron 20.0%
!! CAATAATTAAAAGATCAAGA+AGG - chr4_4:64399335-64399354 None:intergenic 20.0%
!! ATTGAATTGTTCAATTTGTA+TGG + chr4_4:64399351-64399370 Msa0694990:intron 20.0%
!! ATAGATAAGATCTAATTTCA+TGG + chr4_4:64399932-64399951 Msa0694990:three_prime_UTR 20.0%
!!! ATATTTCATAATGCTTTAAG+CGG - chr4_4:64400234-64400253 None:intergenic 20.0%
!!! TTCGTTTTGATTTGATTTTG+AGG - chr4_4:64392564-64392583 None:intergenic 25.0%
! GAAGCAAAAAAATACAGATA+GGG - chr4_4:64392624-64392643 None:intergenic 25.0%
!!! CTGATTTGAATTTGATTTGA+GGG - chr4_4:64392646-64392665 None:intergenic 25.0%
!!! TCTGATTTGAATTTGATTTG+AGG - chr4_4:64392647-64392666 None:intergenic 25.0%
!! CTATATTTGAAATTACCTGA+AGG + chr4_4:64393514-64393533 Msa0694990:intron 25.0%
!!! TAATTCTAAAATGTTTGAGG+AGG - chr4_4:64393733-64393752 None:intergenic 25.0%
! TAGCTTGAACTAAAAATTTG+GGG - chr4_4:64394079-64394098 None:intergenic 25.0%
! GTAGCTTGAACTAAAAATTT+GGG - chr4_4:64394080-64394099 None:intergenic 25.0%
! TGTAGCTTGAACTAAAAATT+TGG - chr4_4:64394081-64394100 None:intergenic 25.0%
! AAATGTTATGCGCATTAAAT+AGG - chr4_4:64394242-64394261 None:intergenic 25.0%
! GAAAAAAGTTTCAAAGAGTT+TGG - chr4_4:64394538-64394557 None:intergenic 25.0%
! TAATGTTGAAGAGCAAAATT+CGG + chr4_4:64394689-64394708 Msa0694990:CDS 25.0%
! CAATAAAATAACCAATCACA+TGG - chr4_4:64394767-64394786 None:intergenic 25.0%
!!! GTTTTTTACCAGTTCATTTA+CGG + chr4_4:64394935-64394954 Msa0694990:intron 25.0%
! TAATAAATCCGTAAATGAAC+TGG - chr4_4:64394946-64394965 None:intergenic 25.0%
! AAATGAGTAATCACATTGAA+CGG - chr4_4:64395166-64395185 None:intergenic 25.0%
!! TTGATTTTAGACTTCTATTC+TGG + chr4_4:64395264-64395283 Msa0694990:intron 25.0%
! ATCAAACAGATCATATTCAT+AGG + chr4_4:64395376-64395395 Msa0694990:CDS 25.0%
!!! ATTGGAGTTTTCTTGTTTTT+TGG + chr4_4:64395631-64395650 Msa0694990:intron 25.0%
!!! TTGGAGTTTTCTTGTTTTTT+GGG + chr4_4:64395632-64395651 Msa0694990:intron 25.0%
! TTCTTAAAAAATGGCATGAT+TGG + chr4_4:64396266-64396285 Msa0694990:intron 25.0%
! GAATCTATTTGTAACAAGTT+TGG - chr4_4:64396534-64396553 None:intergenic 25.0%
! AAAAACCACTTTAATTCAGA+AGG + chr4_4:64396633-64396652 Msa0694990:intron 25.0%
! ATATTTACTAAGTGTCTGTT+TGG - chr4_4:64396740-64396759 None:intergenic 25.0%
!!! TAGTTTTTTCATGAAAAACC+GGG + chr4_4:64396862-64396881 Msa0694990:intron 25.0%
! TAACTATATAAAGATTGCAC+CGG - chr4_4:64397204-64397223 None:intergenic 25.0%
!!! TTCTAGTTTATGCTGTTATT+TGG + chr4_4:64397490-64397509 Msa0694990:intron 25.0%
! ATCAATGCAAATCCAATATT+TGG - chr4_4:64397572-64397591 None:intergenic 25.0%
!! ATCGATTCAAATGAATTTGT+AGG - chr4_4:64397600-64397619 None:intergenic 25.0%
!!! CAACAGCTTAATATTTTTAC+TGG - chr4_4:64397970-64397989 None:intergenic 25.0%
! TTTGTAACCACATAAACTAT+TGG - chr4_4:64398052-64398071 None:intergenic 25.0%
! TTAGGATAAAAAATGTTGAG+GGG + chr4_4:64398241-64398260 Msa0694990:intron 25.0%
!! ATATTTTACCCTAAACTCAA+AGG - chr4_4:64398356-64398375 None:intergenic 25.0%
! AATTGACTACACTAGAAAAT+AGG + chr4_4:64398547-64398566 Msa0694990:intron 25.0%
! GTTATGTGTCATAGTAATAT+TGG + chr4_4:64398738-64398757 Msa0694990:intron 25.0%
!! ATGAGAAGTGTATTAGTAAA+TGG - chr4_4:64398838-64398857 None:intergenic 25.0%
!!! TAATATTTTGACGATGACAA+AGG + chr4_4:64399225-64399244 Msa0694990:CDS 25.0%
!!! TTAAAGATCTTGTGTTGATT+TGG + chr4_4:64399600-64399619 Msa0694990:intron 25.0%
! AACAATATTGCATTGAAGAA+GGG + chr4_4:64399710-64399729 Msa0694990:CDS 25.0%
! AACATTCTACATATCAGAAA+TGG - chr4_4:64400209-64400228 None:intergenic 25.0%
!! TATTTCATAATGCTTTAAGC+GGG - chr4_4:64400233-64400252 None:intergenic 25.0%
GGAAGCAAAAAAATACAGAT+AGG - chr4_4:64392625-64392644 None:intergenic 30.0%
TTTAACCTGAGATTTGTCTT+TGG - chr4_4:64392819-64392838 None:intergenic 30.0%
ACTCAATACTCATCTTGATT+TGG + chr4_4:64393035-64393054 Msa0694990:CDS 30.0%
TTCAATGTAATCACATGTGT+TGG + chr4_4:64393118-64393137 Msa0694990:intron 30.0%
! GTGTTTTTCTATTACTGTAC+AGG + chr4_4:64393187-64393206 Msa0694990:intron 30.0%
TTTCTATTACTGTACAGGTT+CGG + chr4_4:64393192-64393211 Msa0694990:intron 30.0%
ACCTGAGAATATTGGAAAAA+TGG + chr4_4:64393256-64393275 Msa0694990:CDS 30.0%
!! ACCATTTTTCCAATATTCTC+AGG - chr4_4:64393260-64393279 None:intergenic 30.0%
TTATTGATCAAAGATCCTTC+AGG - chr4_4:64393532-64393551 None:intergenic 30.0%
!!! TGAAGATATTGGTTTTGCAA+TGG + chr4_4:64394284-64394303 Msa0694990:intron 30.0%
!!! GAAGATATTGGTTTTGCAAT+GGG + chr4_4:64394285-64394304 Msa0694990:intron 30.0%
! TTGAGCCTTTTTGATATACA+TGG + chr4_4:64394308-64394327 Msa0694990:intron 30.0%
CAATGCCATGTATATCAAAA+AGG - chr4_4:64394316-64394335 None:intergenic 30.0%
! CAAGTTTTACTACCACTTAA+AGG - chr4_4:64394441-64394460 None:intergenic 30.0%
TTAATCACATTCTTGTACCA+AGG - chr4_4:64394480-64394499 None:intergenic 30.0%
AAAATATGCTTTCCAGATTC+TGG + chr4_4:64394571-64394590 Msa0694990:intron 30.0%
AATCATAAATGTCCAGAATC+TGG - chr4_4:64394586-64394605 None:intergenic 30.0%
! TTATAACCTTTTCACGACTA+AGG - chr4_4:64394719-64394738 None:intergenic 30.0%
AAAACTGTGCAAATAAGTTG+AGG + chr4_4:64395299-64395318 Msa0694990:intron 30.0%
! AAACTGTGCAAATAAGTTGA+GGG + chr4_4:64395300-64395319 Msa0694990:intron 30.0%
! AAAGTACTTACCACAACAAT+TGG - chr4_4:64395429-64395448 None:intergenic 30.0%
CTGCAAGAAAAAAATTGAGT+TGG - chr4_4:64395502-64395521 None:intergenic 30.0%
!!! ACTCAATTTTTTTCTTGCAG+AGG + chr4_4:64395502-64395521 Msa0694990:intron 30.0%
!!! CTCAATTTTTTTCTTGCAGA+GGG + chr4_4:64395503-64395522 Msa0694990:intron 30.0%
!!! TCAATTTTTTTCTTGCAGAG+GGG + chr4_4:64395504-64395523 Msa0694990:intron 30.0%
!!! TATTATACCTGTTTTTGACC+AGG + chr4_4:64395566-64395585 Msa0694990:CDS 30.0%
AAGTAACAATAAGTTTGTGG+TGG + chr4_4:64395741-64395760 Msa0694990:intron 30.0%
! TTAGTCATAAGTTCTGCTTT+TGG + chr4_4:64395780-64395799 Msa0694990:intron 30.0%
TTAAACTAAAGAATCGTAGC+CGG - chr4_4:64395958-64395977 None:intergenic 30.0%
TAATGAATAAGCACTAACCT+AGG + chr4_4:64396391-64396410 Msa0694990:intron 30.0%
AAAGGAAGTTGTACATTGAA+AGG + chr4_4:64396444-64396463 Msa0694990:intron 30.0%
!! GATTTTAAGAAGCTGAGAAT+TGG - chr4_4:64396660-64396679 None:intergenic 30.0%
TTCTCAGCTTCTTAAAATCA+CGG + chr4_4:64396661-64396680 Msa0694990:intron 30.0%
TCAAACTTCAAACGATCAAT+TGG - chr4_4:64396768-64396787 None:intergenic 30.0%
GTAAGAGATAAAGTTCTTTC+AGG - chr4_4:64396816-64396835 None:intergenic 30.0%
TTACTCCAACAACTCAAATT+AGG - chr4_4:64396948-64396967 None:intergenic 30.0%
! GGGTTACTTTATGAAAACAA+AGG - chr4_4:64397176-64397195 None:intergenic 30.0%
AACTATATAAAGATTGCACC+GGG - chr4_4:64397203-64397222 None:intergenic 30.0%
CATGTTCAATCACCAAATAT+TGG + chr4_4:64397557-64397576 Msa0694990:intron 30.0%
! TTATGAACCCAACTTTTTGA+GGG + chr4_4:64397678-64397697 Msa0694990:intron 30.0%
TAGCTGTTGTTAGTAATCAT+TGG + chr4_4:64397745-64397764 Msa0694990:intron 30.0%
! CTTTTCAGAAATACATGACT+TGG + chr4_4:64397853-64397872 Msa0694990:intron 30.0%
TGTAAAATTCATCTCTTCTC+CGG - chr4_4:64397886-64397905 None:intergenic 30.0%
!! ATCAAACTTGGTTGTTTTGT+AGG + chr4_4:64398014-64398033 Msa0694990:intron 30.0%
TGTGGTTACAAAATTGTTAC+TGG + chr4_4:64398060-64398079 Msa0694990:CDS 30.0%
! AATATGATGATTTTACCGAG+AGG + chr4_4:64398121-64398140 Msa0694990:CDS 30.0%
AAAAAAAAGTCCATACCTCT+CGG - chr4_4:64398139-64398158 None:intergenic 30.0%
TAAAGAATTTACCTACTCGT+TGG + chr4_4:64398174-64398193 Msa0694990:intron 30.0%
AAATATACAAACCAACGAGT+AGG - chr4_4:64398188-64398207 None:intergenic 30.0%
AATTCAGACCATACTAATGA+AGG + chr4_4:64398309-64398328 Msa0694990:intron 30.0%
TGAACAAAGTATGTTGTCAA+AGG + chr4_4:64398400-64398419 Msa0694990:intron 30.0%
GAACAAAGTATGTTGTCAAA+GGG + chr4_4:64398401-64398420 Msa0694990:intron 30.0%
AACAAAGTATGTTGTCAAAG+GGG + chr4_4:64398402-64398421 Msa0694990:intron 30.0%
GATTTGAATCATGAATCAGA+AGG - chr4_4:64398573-64398592 None:intergenic 30.0%
TCATGATTCAAATCTCGATT+TGG + chr4_4:64398579-64398598 Msa0694990:intron 30.0%
! TATGGTCTGGTTTACATTTA+TGG + chr4_4:64398612-64398631 Msa0694990:intron 30.0%
TTTGTATCCATCTTTCCTTT+GGG + chr4_4:64398879-64398898 Msa0694990:intron 30.0%
AATTAACAACCCAAAATGAC+CGG - chr4_4:64398910-64398929 None:intergenic 30.0%
ACAATCAAGAAACTAACTCA+AGG + chr4_4:64399002-64399021 Msa0694990:CDS 30.0%
TGCTAAAACTGATGAAGAAA+AGG + chr4_4:64399055-64399074 Msa0694990:CDS 30.0%
! AAATTGTGAGTCTTATCTTG+TGG + chr4_4:64399081-64399100 Msa0694990:intron 30.0%
AAAAAACAGAATGCTACAAC+TGG + chr4_4:64399187-64399206 Msa0694990:CDS 30.0%
AAAAACAGAATGCTACAACT+GGG + chr4_4:64399188-64399207 Msa0694990:CDS 30.0%
CATCGTCAAAATATTATTGC+AGG - chr4_4:64399221-64399240 None:intergenic 30.0%
AATGAGTTATTGCGTATATG+AGG + chr4_4:64399286-64399305 Msa0694990:intron 30.0%
ATGAGTTATTGCGTATATGA+GGG + chr4_4:64399287-64399306 Msa0694990:intron 30.0%
CTCTTATCTCCAATAAAAGA+AGG - chr4_4:64399399-64399418 None:intergenic 30.0%
ATAAGAGAATCAACCTTTCT+TGG + chr4_4:64399412-64399431 Msa0694990:CDS 30.0%
! GATACAAAGTACTCTCAAAA+GGG - chr4_4:64399533-64399552 None:intergenic 30.0%
! TGATACAAAGTACTCTCAAA+AGG - chr4_4:64399534-64399553 None:intergenic 30.0%
CTTCTTCAATGCAATATTGT+TGG - chr4_4:64399711-64399730 None:intergenic 30.0%
CAACAATATTGCATTGAAGA+AGG + chr4_4:64399709-64399728 Msa0694990:CDS 30.0%
AAGAAGTCCTATTTGTATTC+CGG - chr4_4:64399966-64399985 None:intergenic 30.0%
!!! AGAGGAAGTTTTGATTATAG+AGG + chr4_4:64400011-64400030 Msa0694990:three_prime_UTR 30.0%
CATTCTACAGAAACAAACTT+CGG - chr4_4:64400069-64400088 None:intergenic 30.0%
TTACATGCATACATAACCAA+GGG - chr4_4:64400158-64400177 None:intergenic 30.0%
ATTACATGCATACATAACCA+AGG - chr4_4:64400159-64400178 None:intergenic 30.0%
! TGACAAGTGGATTTATATGA+AGG + chr4_4:64400183-64400202 Msa0694990:three_prime_UTR 30.0%
ACCTGAAACAAAGTGAACAA+GGG - chr4_4:64392595-64392614 None:intergenic 35.0%
GGAAAGAACTTGAAGAACTT+AGG - chr4_4:64392997-64393016 None:intergenic 35.0%
AAGTTCTTTCCTGAACTTTC+CGG + chr4_4:64393006-64393025 Msa0694990:CDS 35.0%
!! TACTCATCTTGATTTGGTTG+AGG + chr4_4:64393041-64393060 Msa0694990:intron 35.0%
TTCTATTACTGTACAGGTTC+GGG + chr4_4:64393193-64393212 Msa0694990:intron 35.0%
AAGGATACACCTGAGAATAT+TGG + chr4_4:64393248-64393267 Msa0694990:intron 35.0%
ATTCTTGAGAGTTGAGAACA+TGG + chr4_4:64393336-64393355 Msa0694990:intron 35.0%
TCAAAATTTACCATACTGGC+TGG - chr4_4:64393573-64393592 None:intergenic 35.0%
CAGCTCAAAATTTACCATAC+TGG - chr4_4:64393577-64393596 None:intergenic 35.0%
TTAAGATCAAAGGCAAAGCT+CGG + chr4_4:64393677-64393696 Msa0694990:intron 35.0%
AGAATAAGAAAGACGCCTTT+CGG - chr4_4:64393803-64393822 None:intergenic 35.0%
! GCTCTTTGGTTTCATGAATA+TGG - chr4_4:64393875-64393894 None:intergenic 35.0%
ATGAAACCAAAGAGCTGATA+TGG + chr4_4:64393880-64393899 Msa0694990:intron 35.0%
TACAACTTTGTCCCTTATAG+TGG + chr4_4:64394139-64394158 Msa0694990:intron 35.0%
!!! CGCTAGTTTTACCACTATAA+GGG - chr4_4:64394153-64394172 None:intergenic 35.0%
CCTTATAGTGGTAAAACTAG+CGG + chr4_4:64394151-64394170 Msa0694990:intron 35.0%
!! GAAACATTTGATTTGAGCCT+TGG + chr4_4:64394460-64394479 Msa0694990:intron 35.0%
! ACTTTGTTTAAGCACATTCG+TGG + chr4_4:64394666-64394685 Msa0694990:CDS 35.0%
! TCAACAGTTCAGCTTTGATA+GGG - chr4_4:64394846-64394865 None:intergenic 35.0%
! TTCAACAGTTCAGCTTTGAT+AGG - chr4_4:64394847-64394866 None:intergenic 35.0%
CAGAGTTTAGAAGATGTAAC+TGG + chr4_4:64395019-64395038 Msa0694990:intron 35.0%
TTTGAGCCTATTTGGAGAAA+AGG + chr4_4:64395078-64395097 Msa0694990:CDS 35.0%
CTAATTACCTGGTCAAAAAC+AGG - chr4_4:64395576-64395595 None:intergenic 35.0%
AACCAAACGATCTAATTACC+TGG - chr4_4:64395587-64395606 None:intergenic 35.0%
!! GATCGTTTGGTTTGAATTGT+TGG + chr4_4:64395595-64395614 Msa0694990:intron 35.0%
!! GTTGGTTTGTGCTTGAATAT+TGG + chr4_4:64395613-64395632 Msa0694990:intron 35.0%
!! TACAATTTTGACACGATTCC+AGG - chr4_4:64395919-64395938 None:intergenic 35.0%
AATCGTGTCAAAATTGTAGC+TGG + chr4_4:64395921-64395940 Msa0694990:intron 35.0%
TAAACTAAAGAATCGTAGCC+GGG - chr4_4:64395957-64395976 None:intergenic 35.0%
CTGGTTAACTTCATAGATCT+TGG + chr4_4:64396032-64396051 Msa0694990:intron 35.0%
TTCATAGATCTTGGATTGAC+TGG + chr4_4:64396041-64396060 Msa0694990:intron 35.0%
!! AAATCTACTTTTCGTTCTCC+AGG - chr4_4:64396153-64396172 None:intergenic 35.0%
TTCAGCAACTGAACAATAGA+AGG - chr4_4:64396237-64396256 None:intergenic 35.0%
TTCTATTGTTCAGTTGCTGA+AGG + chr4_4:64396236-64396255 Msa0694990:CDS 35.0%
TAAAAAATGGCATGATTGGC+AGG + chr4_4:64396270-64396289 Msa0694990:intron 35.0%
CATAGAGTATACAACTTCCT+AGG - chr4_4:64396411-64396430 None:intergenic 35.0%
TTACAAATAGATTCAACCCG+AGG + chr4_4:64396540-64396559 Msa0694990:intron 35.0%
TTGGACCTTCTGAATTAAAG+TGG - chr4_4:64396641-64396660 None:intergenic 35.0%
! TTTTTCATGAAAAACCGGGT+TGG + chr4_4:64396866-64396885 Msa0694990:intron 35.0%
AGAAACAGAACATAGTTGCA+AGG - chr4_4:64397037-64397056 None:intergenic 35.0%
TTGGAGGAAATTTGATCTCA+TGG - chr4_4:64397067-64397086 None:intergenic 35.0%
AGATCAAATTTCCTCCAATG+AGG + chr4_4:64397069-64397088 Msa0694990:intron 35.0%
ATCAGAATAACCCACAACTT+GGG + chr4_4:64397145-64397164 Msa0694990:intron 35.0%
TCATAAAGTAACCCTTAACC+CGG + chr4_4:64397182-64397201 Msa0694990:intron 35.0%
AATGTGAATCAGTGTTCCAA+AGG + chr4_4:64397226-64397245 Msa0694990:intron 35.0%
!! CATTACTTTTGTTGTCAGTG+TGG - chr4_4:64397283-64397302 None:intergenic 35.0%
CTGACAACAAAAGTAATGTC+CGG + chr4_4:64397285-64397304 Msa0694990:intron 35.0%
CTTGATATACTTGAGGAAAC+TGG - chr4_4:64397447-64397466 None:intergenic 35.0%
TAGCTAGATGACAATGTTCT+CGG - chr4_4:64397521-64397540 None:intergenic 35.0%
! GTTATGAACCCAACTTTTTG+AGG + chr4_4:64397677-64397696 Msa0694990:intron 35.0%
AATGTTGCCCTCAAAAAGTT+GGG - chr4_4:64397688-64397707 None:intergenic 35.0%
CTGTTGTTAGTAATCATTGG+AGG + chr4_4:64397748-64397767 Msa0694990:intron 35.0%
! TACATGACTTGGAAGAAAAC+CGG + chr4_4:64397864-64397883 Msa0694990:CDS 35.0%
ATTTCATCACCTAGCTCAAA+AGG + chr4_4:64397929-64397948 Msa0694990:CDS 35.0%
! AAAGGTTTACCTTTTGAGCT+AGG - chr4_4:64397941-64397960 None:intergenic 35.0%
ATGCAGCACATAATCAAACT+TGG + chr4_4:64398002-64398021 Msa0694990:intron 35.0%
! CATAAACTATTGGTGGCATT+AGG - chr4_4:64398042-64398061 None:intergenic 35.0%
AATGCCACCAATAGTTTATG+TGG + chr4_4:64398042-64398061 Msa0694990:CDS 35.0%
GTAACCACATAAACTATTGG+TGG - chr4_4:64398049-64398068 None:intergenic 35.0%
! ATTCCAAGACCTTTGAGTTT+AGG + chr4_4:64398344-64398363 Msa0694990:intron 35.0%
! TTCCAAGACCTTTGAGTTTA+GGG + chr4_4:64398345-64398364 Msa0694990:intron 35.0%
ACATACTTTGTTCAACTTGC+TGG - chr4_4:64398394-64398413 None:intergenic 35.0%
TTAAGATTTGAGCATAGCAG+TGG + chr4_4:64398437-64398456 Msa0694990:intron 35.0%
TAAGATTTGAGCATAGCAGT+GGG + chr4_4:64398438-64398457 Msa0694990:intron 35.0%
!! AATCTCGATTTGGTAACCTT+TGG + chr4_4:64398589-64398608 Msa0694990:intron 35.0%
TCGTAAGTGTACAGTAGTTT+GGG + chr4_4:64398779-64398798 Msa0694990:intron 35.0%
GTTTGTATCCATCTTTCCTT+TGG + chr4_4:64398878-64398897 Msa0694990:intron 35.0%
TTAGTTTCTTGATTGTAGCC+CGG - chr4_4:64398998-64399017 None:intergenic 35.0%
CAAGAAACTAACTCAAGGAA+TGG + chr4_4:64399007-64399026 Msa0694990:CDS 35.0%
GGCTGAAAACAACAAATCTA+TGG + chr4_4:64399028-64399047 Msa0694990:CDS 35.0%
!!! GCAAAAGCACCTTCTTTTAT+TGG + chr4_4:64399387-64399406 Msa0694990:CDS 35.0%
AAAATACAATACCCAACAGC+TGG - chr4_4:64399471-64399490 None:intergenic 35.0%
AATATTGTTGGATCCATTGC+CGG - chr4_4:64399699-64399718 None:intergenic 35.0%
TAATTTCATGGAGACTGTAC+CGG + chr4_4:64399944-64399963 Msa0694990:three_prime_UTR 35.0%
GTACTAAAATTCTTTGGCAG+AGG + chr4_4:64399993-64400012 Msa0694990:three_prime_UTR 35.0%
! TCTTATCCTTTTGATGCAAG+CGG + chr4_4:64400106-64400125 Msa0694990:three_prime_UTR 35.0%
TACATGCATACATAACCAAG+GGG - chr4_4:64400157-64400176 None:intergenic 35.0%
GCATGTAATGTAATGACAAG+TGG + chr4_4:64400170-64400189 Msa0694990:three_prime_UTR 35.0%
! ACCCTTGTTCACTTTGTTTC+AGG + chr4_4:64392591-64392610 Msa0694990:five_prime_UTR 40.0%
GACCTGAAACAAAGTGAACA+AGG - chr4_4:64392596-64392615 None:intergenic 40.0%
TCCTCTATCGCATGCTTATT+TGG + chr4_4:64392676-64392695 Msa0694990:intron 40.0%
ACCAAATAAGCATGCGATAG+AGG - chr4_4:64392680-64392699 None:intergenic 40.0%
ATCGAGAAGCTCTACCAATA+TGG + chr4_4:64392776-64392795 Msa0694990:CDS 40.0%
CTCTTCCAAAGACAAATCTC+AGG + chr4_4:64392811-64392830 Msa0694990:CDS 40.0%
! TCAATTTTCGCAGAACGTCA+AGG + chr4_4:64392903-64392922 Msa0694990:intron 40.0%
CAGAACGTCAAGGATTATCA+AGG + chr4_4:64392913-64392932 Msa0694990:intron 40.0%
!! ATGAGTATTGAGTGCAAGAC+CGG - chr4_4:64393028-64393047 None:intergenic 40.0%
TCTTGTGCAACTTCTTTCCT+CGG + chr4_4:64393286-64393305 Msa0694990:CDS 40.0%
AATAAACCACAACTTACCCG+AGG - chr4_4:64393306-64393325 None:intergenic 40.0%
GATTTCATTACCAGCCAGTA+TGG + chr4_4:64393560-64393579 Msa0694990:intron 40.0%
AAATGTTTGAGGAGGTCTTC+CGG - chr4_4:64393725-64393744 None:intergenic 40.0%
AATAAGAAAGACGCCTTTCG+GGG - chr4_4:64393801-64393820 None:intergenic 40.0%
GAATAAGAAAGACGCCTTTC+GGG - chr4_4:64393802-64393821 None:intergenic 40.0%
!!! CCGCTAGTTTTACCACTATA+AGG - chr4_4:64394154-64394173 None:intergenic 40.0%
CTGCAAGAGATCATCTATAC+TGG - chr4_4:64394391-64394410 None:intergenic 40.0%
!! TCTCTTGCAGCTTGTTAATG+TGG + chr4_4:64394401-64394420 Msa0694990:intron 40.0%
AAGGTGAGAAACCATGTGAT+TGG + chr4_4:64394753-64394772 Msa0694990:intron 40.0%
ATTGGAGTTTATGCATGCTG+TGG + chr4_4:64394988-64395007 Msa0694990:intron 40.0%
CAAATAGGCTCAAACTCTTC+AGG - chr4_4:64395072-64395091 None:intergenic 40.0%
CTGAAGAGTTTGAGCCTATT+TGG + chr4_4:64395070-64395089 Msa0694990:CDS 40.0%
GTTGATATCATGCCTTCACA+TGG + chr4_4:64395398-64395417 Msa0694990:CDS 40.0%
GACCAGGTAATTAGATCGTT+TGG + chr4_4:64395582-64395601 Msa0694990:intron 40.0%
CTTGGATTGACTGGTAAATG+TGG + chr4_4:64396050-64396069 Msa0694990:intron 40.0%
TGAAAGGTGAAAACTCTGCA+AGG - chr4_4:64396185-64396204 None:intergenic 40.0%
!! GAATCTTGTGGTGTTGTGAA+AGG - chr4_4:64396201-64396220 None:intergenic 40.0%
AGCATTTGTCGTGAATCTTG+TGG - chr4_4:64396213-64396232 None:intergenic 40.0%
TACTAAGTGTCTGTTTGGAG+TGG - chr4_4:64396735-64396754 None:intergenic 40.0%
ACTCAAATTAGGAGACGTCA+AGG - chr4_4:64396937-64396956 None:intergenic 40.0%
!! CGTCTCCTAATTTGAGTTGT+TGG + chr4_4:64396940-64396959 Msa0694990:intron 40.0%
AGAAGCAGAATGTTGTGCTA+TGG - chr4_4:64397006-64397025 None:intergenic 40.0%
! GGGTTATTCTGATGCTGATT+GGG - chr4_4:64397138-64397157 None:intergenic 40.0%
TGGGTTATTCTGATGCTGAT+TGG - chr4_4:64397139-64397158 None:intergenic 40.0%
CATCAGAATAACCCACAACT+TGG + chr4_4:64397144-64397163 Msa0694990:intron 40.0%
AAAGGTAACACCCAAGTTGT+GGG - chr4_4:64397158-64397177 None:intergenic 40.0%
TAAAGATTGCACCGGGTTAA+GGG - chr4_4:64397196-64397215 None:intergenic 40.0%
ATAAAGATTGCACCGGGTTA+AGG - chr4_4:64397197-64397216 None:intergenic 40.0%
TTAATTACCTCACAGTGACC+AGG - chr4_4:64397311-64397330 None:intergenic 40.0%
TCAAGCTACTACTAGGTCAA+GGG - chr4_4:64397380-64397399 None:intergenic 40.0%
GAACATTGTCATCTAGCTAG+TGG + chr4_4:64397522-64397541 Msa0694990:intron 40.0%
CAATGTTGCCCTCAAAAAGT+TGG - chr4_4:64397689-64397708 None:intergenic 40.0%
! GATGATTTTACCGAGAGGTA+TGG + chr4_4:64398126-64398145 Msa0694990:intron 40.0%
! GTAGTACGCACATGTCATTT+AGG + chr4_4:64398223-64398242 Msa0694990:intron 40.0%
GGATAAAAAATGTTGAGGGG+AGG + chr4_4:64398244-64398263 Msa0694990:intron 40.0%
AAAAATGTTGAGGGGAGGTT+AGG + chr4_4:64398249-64398268 Msa0694990:intron 40.0%
GAAGCCTTTGTGAAGGTTTA+CGG + chr4_4:64398279-64398298 Msa0694990:intron 40.0%
ACAACCGTAAACCTTCACAA+AGG - chr4_4:64398286-64398305 None:intergenic 40.0%
ACTCAAAGGTCTTGGAATCT+TGG - chr4_4:64398342-64398361 None:intergenic 40.0%
TACCCTAAACTCAAAGGTCT+TGG - chr4_4:64398350-64398369 None:intergenic 40.0%
TCAAATCTTAAGCCCTTGTC+CGG - chr4_4:64398428-64398447 None:intergenic 40.0%
TTGCAGATCGCGAAAATTAG+AGG - chr4_4:64398529-64398548 None:intergenic 40.0%
!! CGATTTGGTAACCTTTGGTA+TGG + chr4_4:64398594-64398613 Msa0694990:intron 40.0%
TGTAAACCAGACCATACCAA+AGG - chr4_4:64398608-64398627 None:intergenic 40.0%
!!! AATGCCGACACTTGTTTTTG+AGG + chr4_4:64398712-64398731 Msa0694990:intron 40.0%
!!! ATGCCGACACTTGTTTTTGA+GGG + chr4_4:64398713-64398732 Msa0694990:intron 40.0%
CTCGTAAGTGTACAGTAGTT+TGG + chr4_4:64398778-64398797 Msa0694990:intron 40.0%
AAGTGTACAGTAGTTTGGGA+TGG + chr4_4:64398783-64398802 Msa0694990:intron 40.0%
GATGGTGAAAGCTCTTGATT+TGG + chr4_4:64398801-64398820 Msa0694990:intron 40.0%
AGGAAAGATGGATACAAACG+AGG - chr4_4:64398877-64398896 None:intergenic 40.0%
!! ATCTTTCCTTTGGGATTTGC+CGG + chr4_4:64398888-64398907 Msa0694990:intron 40.0%
CTCCAGATTGAAAAACGTTG+AGG + chr4_4:64398965-64398984 Msa0694990:intron 40.0%
!! CTCCTCAACGTTTTTCAATC+TGG - chr4_4:64398970-64398989 None:intergenic 40.0%
TAGTTTCTTGATTGTAGCCC+GGG - chr4_4:64398997-64399016 None:intergenic 40.0%
TGGTTGCTTCTTTCCAAGAA+AGG - chr4_4:64399428-64399447 None:intergenic 40.0%
TTTACTTCTGCAGAGCGAAA+CGG + chr4_4:64399663-64399682 Msa0694990:intron 40.0%
! CAACTTGTCAATAGAGCACT+AGG + chr4_4:64399758-64399777 Msa0694990:CDS 40.0%
GACTGTACCGGAATACAAAT+AGG + chr4_4:64399956-64399975 Msa0694990:three_prime_UTR 40.0%
! CTTATCCTTTTGATGCAAGC+GGG + chr4_4:64400107-64400126 Msa0694990:three_prime_UTR 40.0%
CATTGGAAGCTTCTTCGTTC+TGG - chr4_4:64392726-64392745 None:intergenic 45.0%
TCGGAAGGTTCAGTAGTCAT+TGG - chr4_4:64392743-64392762 None:intergenic 45.0%
ATGTAAGCAGCTTCTTCGGA+AGG - chr4_4:64392758-64392777 None:intergenic 45.0%
CTCGATGTAAGCAGCTTCTT+CGG - chr4_4:64392762-64392781 None:intergenic 45.0%
! AGTTGAGTTGCTCGCCATAT+TGG - chr4_4:64392793-64392812 None:intergenic 45.0%
TTGGTTGAGGCTGATGAACT+CGG + chr4_4:64393054-64393073 Msa0694990:intron 45.0%
GGTGTATCCTTGCAGAAAAG+AGG - chr4_4:64393239-64393258 None:intergenic 45.0%
CTTGTGCAACTTCTTTCCTC+GGG + chr4_4:64393287-64393306 Msa0694990:CDS 45.0%
TTCTTTCCTCGGGTAAGTTG+TGG + chr4_4:64393297-64393316 Msa0694990:intron 45.0%
CAAAGCTCGGTTGTTGCATA+GGG + chr4_4:64393690-64393709 Msa0694990:intron 45.0%
AACCAAAGAGCTGATATGGC+TGG + chr4_4:64393884-64393903 Msa0694990:intron 45.0%
TGTTAATGTGGTGACTGCCA+AGG + chr4_4:64394413-64394432 Msa0694990:intron 45.0%
ACTACCACTTAAAGGCTCCT+TGG - chr4_4:64394433-64394452 None:intergenic 45.0%
GGATGACCTTAGTCGTGAAA+AGG + chr4_4:64394710-64394729 Msa0694990:CDS 45.0%
TGTCGTTCCATTTCCTCTTG+GGG - chr4_4:64394871-64394890 None:intergenic 45.0%
! GTGTCGTTCCATTTCCTCTT+GGG - chr4_4:64394872-64394891 None:intergenic 45.0%
! TGTGTCGTTCCATTTCCTCT+TGG - chr4_4:64394873-64394892 None:intergenic 45.0%
! CTGGAGCCTTTTCTCCAAAT+AGG - chr4_4:64395087-64395106 None:intergenic 45.0%
GAGCTGCTTGGAATCATTGA+AGG + chr4_4:64395121-64395140 Msa0694990:CDS 45.0%
!! CAATTGGAAGTGCCATGTGA+AGG - chr4_4:64395413-64395432 None:intergenic 45.0%
CATGGCACTTCCAATTGTTG+TGG + chr4_4:64395416-64395435 Msa0694990:CDS 45.0%
TGTCGATAGCGACACTATTG+CGG + chr4_4:64395822-64395841 Msa0694990:intron 45.0%
ACTATTGCGGAATAGCGTGA+CGG + chr4_4:64395835-64395854 Msa0694990:intron 45.0%
TTCAACAGTCTTGGCAGTTG+CGG + chr4_4:64395893-64395912 Msa0694990:intron 45.0%
TAAAGAATCGTAGCCGGGAA+AGG - chr4_4:64395952-64395971 None:intergenic 45.0%
!! TAAGGGACTTGGTGTCTGTT+TGG + chr4_4:64396568-64396587 Msa0694990:intron 45.0%
!! GACTTGGTGTCTGTTTGGAT+GGG + chr4_4:64396573-64396592 Msa0694990:intron 45.0%
! TTCATGAAAAACCGGGTTGG+AGG + chr4_4:64396869-64396888 Msa0694990:intron 45.0%
ACTACATATTGCCTCCAACC+CGG - chr4_4:64396883-64396902 None:intergenic 45.0%
CAGATAGAAGGTCCACTTAC+GGG - chr4_4:64397103-64397122 None:intergenic 45.0%
GCAGATAGAAGGTCCACTTA+CGG - chr4_4:64397104-64397123 None:intergenic 45.0%
TAAGTGGACCTTCTATCTGC+TGG + chr4_4:64397104-64397123 Msa0694990:intron 45.0%
! TATTCTGATGCTGATTGGGC+AGG - chr4_4:64397134-64397153 None:intergenic 45.0%
CAAAGGTAACACCCAAGTTG+TGG - chr4_4:64397159-64397178 None:intergenic 45.0%
GTGTTCCAAAGGTCATCACA+TGG + chr4_4:64397237-64397256 Msa0694990:intron 45.0%
ATGCTCCATGTGATGACCTT+TGG - chr4_4:64397245-64397264 None:intergenic 45.0%
AACAAAAGTAATGTCCGGCC+TGG + chr4_4:64397290-64397309 Msa0694990:intron 45.0%
GGTCAATATCGACGTCTAGT+TGG - chr4_4:64397339-64397358 None:intergenic 45.0%
ACTAGACGTCGATATTGACC+AGG + chr4_4:64397339-64397358 Msa0694990:intron 45.0%
CTAGACGTCGATATTGACCA+GGG + chr4_4:64397340-64397359 Msa0694990:intron 45.0%
TATTGACCAGGGTCGTTCAA+TGG + chr4_4:64397351-64397370 Msa0694990:intron 45.0%
CAAGCTACTACTAGGTCAAG+GGG - chr4_4:64397379-64397398 None:intergenic 45.0%
GTCAAGCTACTACTAGGTCA+AGG - chr4_4:64397381-64397400 None:intergenic 45.0%
ACCTAGTAGTAGCTTGACGT+TGG + chr4_4:64397383-64397402 Msa0694990:intron 45.0%
CCTAGTAGTAGCTTGACGTT+GGG + chr4_4:64397384-64397403 Msa0694990:intron 45.0%
TTGACCTAGTGACACTCCTA+TGG - chr4_4:64397412-64397431 None:intergenic 45.0%
TTACTGGTCAGCCATCTGAT+AGG + chr4_4:64398076-64398095 Msa0694990:CDS 45.0%
TCTTCTCCAAGCCTATCAGA+TGG - chr4_4:64398090-64398109 None:intergenic 45.0%
TCATGCAGAAGCCTTTGTGA+AGG + chr4_4:64398272-64398291 Msa0694990:intron 45.0%
CAAAGGTCTTGGAATCTTGG+CGG - chr4_4:64398339-64398358 None:intergenic 45.0%
AAGTATGTTGTCAAAGGGGC+CGG + chr4_4:64398406-64398425 Msa0694990:intron 45.0%
CAGTGGGTAGTACTAAGTGT+TGG + chr4_4:64398454-64398473 Msa0694990:intron 45.0%
TGGTAACCTTTGGTATGGTC+TGG + chr4_4:64398599-64398618 Msa0694990:intron 45.0%
CGACCCTCAAAAACAAGTGT+CGG - chr4_4:64398719-64398738 None:intergenic 45.0%
CTACTGTACACTTACGAGAC+AGG - chr4_4:64398776-64398795 None:intergenic 45.0%
GGCAAATCCCAAAGGAAAGA+TGG - chr4_4:64398889-64398908 None:intergenic 45.0%
AAATGACCGGCAAATCCCAA+AGG - chr4_4:64398897-64398916 None:intergenic 45.0%
! TTGGGATTTGCCGGTCATTT+TGG + chr4_4:64398897-64398916 Msa0694990:intron 45.0%
!! TGGGATTTGCCGGTCATTTT+GGG + chr4_4:64398898-64398917 Msa0694990:intron 45.0%
AAAACGTTGAGGAGTTCACC+CGG + chr4_4:64398976-64398995 Msa0694990:CDS 45.0%
! TGCGGTAGTTGATGCAGATT+TGG - chr4_4:64399448-64399467 None:intergenic 45.0%
ATTGCATTGAAGAAGGGTCG+AGG + chr4_4:64399716-64399735 Msa0694990:CDS 45.0%
! CTTGTCAATAGAGCACTAGG+CGG + chr4_4:64399761-64399780 Msa0694990:CDS 45.0%
TGATTCCCGCTTGCATCAAA+AGG - chr4_4:64400115-64400134 None:intergenic 45.0%
ACTGAACATCTTATGCCCCT+TGG + chr4_4:64400139-64400158 Msa0694990:three_prime_UTR 45.0%
!!! TTTGTATTTTTTTTTTTTTT+TGG + chr4_4:64393165-64393184 Msa0694990:intron 5.0%
!! AACATATAATTTATATTATA+CGG - chr4_4:64394348-64394367 None:intergenic 5.0%
!!! TTTAATCTTTTATTTTATTA+TGG + chr4_4:64399124-64399143 Msa0694990:intron 5.0%
!!! TTAATCTTTTATTTTATTAT+GGG + chr4_4:64399125-64399144 Msa0694990:intron 5.0%
AGTGCAAGACCGGAAAGTTC+AGG - chr4_4:64393018-64393037 None:intergenic 50.0%
TGGTTGAGGCTGATGAACTC+GGG + chr4_4:64393055-64393074 Msa0694990:intron 50.0%
! AGGACTGCCTCTTTTCTGCA+AGG + chr4_4:64393229-64393248 Msa0694990:intron 50.0%
GCAAAGCTCGGTTGTTGCAT+AGG + chr4_4:64393689-64393708 Msa0694990:intron 50.0%
TGCCAGCCATATCAGCTCTT+TGG - chr4_4:64393889-64393908 None:intergenic 50.0%
ACTGCCAAGGAGCCTTTAAG+TGG + chr4_4:64394426-64394445 Msa0694990:intron 50.0%
TGAACTGTTGAAGCCCCAAG+AGG + chr4_4:64394855-64394874 Msa0694990:CDS 50.0%
GTTGAAGCCCCAAGAGGAAA+TGG + chr4_4:64394861-64394880 Msa0694990:CDS 50.0%
CTATTGCGGAATAGCGTGAC+GGG + chr4_4:64395836-64395855 Msa0694990:intron 50.0%
! CAGGCATAAGGTGTCCCAAT+GGG - chr4_4:64395864-64395883 None:intergenic 50.0%
CTAGGCGTCTTCAACAGTCT+TGG + chr4_4:64395884-64395903 Msa0694990:intron 50.0%
GTAGCTGGAAAGACCTTTCC+CGG + chr4_4:64395936-64395955 Msa0694990:intron 50.0%
TGTTATTCCTGCCAGCTTCC+TGG + chr4_4:64396132-64396151 Msa0694990:intron 50.0%
! CTTTTCGTTCTCCAGGAAGC+TGG - chr4_4:64396146-64396165 None:intergenic 50.0%
TCTAACACTCCTCCTCAAGC+TGG + chr4_4:64396489-64396508 Msa0694990:intron 50.0%
ATGTATGCTCCAGCTTGAGG+AGG - chr4_4:64396501-64396520 None:intergenic 50.0%
GACATGTATGCTCCAGCTTG+AGG - chr4_4:64396504-64396523 None:intergenic 50.0%
ATTCAACCCGAGGTCCTCTA+AGG + chr4_4:64396550-64396569 Msa0694990:intron 50.0%
TTCAACCCGAGGTCCTCTAA+GGG + chr4_4:64396551-64396570 Msa0694990:intron 50.0%
ACAGACACCAAGTCCCTTAG+AGG - chr4_4:64396567-64396586 None:intergenic 50.0%
!! GGACTTGGTGTCTGTTTGGA+TGG + chr4_4:64396572-64396591 Msa0694990:intron 50.0%
! TTGGTGTCTGTTTGGATGGG+TGG + chr4_4:64396576-64396595 Msa0694990:intron 50.0%
! TACGGGTGTTGTGTCCTCAT+TGG - chr4_4:64397086-64397105 None:intergenic 50.0%
CAGGTTCACCAGCAGATAGA+AGG - chr4_4:64397115-64397134 None:intergenic 50.0%
CCCAACGTCAAGCTACTACT+AGG - chr4_4:64397387-64397406 None:intergenic 50.0%
AGCTTGACGTTGGGATCCAT+AGG + chr4_4:64397393-64397412 Msa0694990:intron 50.0%
!! GGATCCATAGGAGTGTCACT+AGG + chr4_4:64397405-64397424 Msa0694990:intron 50.0%
GCGGTGGTCCTTCATTAGTA+TGG - chr4_4:64398320-64398339 None:intergenic 50.0%
! TGCCATAGTGCTGCTGCTAT+TGG - chr4_4:64398480-64398499 None:intergenic 50.0%
AAACGTTGAGGAGTTCACCC+GGG + chr4_4:64398977-64398996 Msa0694990:CDS 50.0%
!!! GAAGGTGCTTTTGCGTGCAA+TGG - chr4_4:64399381-64399400 None:intergenic 50.0%
ACAATACCCAACAGCTGGTG+CGG - chr4_4:64399466-64399485 None:intergenic 50.0%
TTGAAGAAGGGTCGAGGTTC+TGG + chr4_4:64399722-64399741 Msa0694990:CDS 50.0%
!! AGAGCACTAGGCGGATTATC+TGG + chr4_4:64399770-64399789 Msa0694990:CDS 50.0%
GGATTATCTGGTGGAGGAAG+AGG + chr4_4:64399782-64399801 Msa0694990:CDS 50.0%
AGAGGAAGTGGAAGAGGTAG+AGG + chr4_4:64399875-64399894 Msa0694990:CDS 50.0%
AGTGGAAGAGGTAGAGGTAG+AGG + chr4_4:64399881-64399900 Msa0694990:CDS 50.0%
GTGGAAGAGGTAGAGGTAGA+GGG + chr4_4:64399882-64399901 Msa0694990:CDS 50.0%
! GAGGTAGAGGTAGAGGGTAT+TGG + chr4_4:64399888-64399907 Msa0694990:CDS 50.0%
GGTTGAGGCTGATGAACTCG+GGG + chr4_4:64393056-64393075 Msa0694990:intron 55.0%
GTTCGGGTGCAAGCGATAAG+AGG + chr4_4:64393209-64393228 Msa0694990:intron 55.0%
GGAGCGTGATGCTGTGCATA+AGG + chr4_4:64393409-64393428 Msa0694990:CDS 55.0%
! AGGCTCTGATGTCTCTGCTG+AGG + chr4_4:64393429-64393448 Msa0694990:CDS 55.0%
TCTGATGTCTCTGCTGAGGC+AGG + chr4_4:64393433-64393452 Msa0694990:CDS 55.0%
CTGCTGAGGCAGGATGTGAA+AGG + chr4_4:64393443-64393462 Msa0694990:CDS 55.0%
TTGCATAGGGATGCCACAGC+CGG + chr4_4:64393703-64393722 Msa0694990:intron 55.0%
AGAAAGACGCCTTTCGGGGT+GGG - chr4_4:64393797-64393816 None:intergenic 55.0%
AAGAAAGACGCCTTTCGGGG+TGG - chr4_4:64393798-64393817 None:intergenic 55.0%
AAAGGCTCCAGCTGAGCGTA+TGG + chr4_4:64395096-64395115 Msa0694990:CDS 55.0%
AGCTCTTCCATACGCTCAGC+TGG - chr4_4:64395106-64395125 None:intergenic 55.0%
GAGCGTATGGAAGAGCTGCT+TGG + chr4_4:64395109-64395128 Msa0694990:CDS 55.0%
! GCAGGCATAAGGTGTCCCAA+TGG - chr4_4:64395865-64395884 None:intergenic 55.0%
TGGGACACCTTATGCCTGCT+AGG + chr4_4:64395866-64395885 Msa0694990:intron 55.0%
GAAGACGCCTAGCAGGCATA+AGG - chr4_4:64395876-64395895 None:intergenic 55.0%
GACTGTTGAAGACGCCTAGC+AGG - chr4_4:64395883-64395902 None:intergenic 55.0%
CAAGTCCCTTAGAGGACCTC+GGG - chr4_4:64396559-64396578 None:intergenic 55.0%
CCAAGTCCCTTAGAGGACCT+CGG - chr4_4:64396560-64396579 None:intergenic 55.0%
! GGGTGTTGTGTCCTCATTGG+AGG - chr4_4:64397083-64397102 None:intergenic 55.0%
GAGGACACAACACCCGTAAG+TGG + chr4_4:64397088-64397107 Msa0694990:intron 55.0%
TTACCTCACAGTGACCAGGC+CGG - chr4_4:64397307-64397326 None:intergenic 55.0%
GGTCAGCCATCTGATAGGCT+TGG + chr4_4:64398081-64398100 Msa0694990:CDS 55.0%
AGGTCTTGGAATCTTGGCGG+TGG - chr4_4:64398336-64398355 None:intergenic 55.0%
TTGTCAAAGGGGCCGGACAA+GGG + chr4_4:64398413-64398432 Msa0694990:intron 55.0%
GGCCAATAGCAGCAGCACTA+TGG + chr4_4:64398475-64398494 Msa0694990:intron 55.0%
! GTGCTTTTGCGTGCAATGGC+TGG - chr4_4:64399377-64399396 None:intergenic 55.0%
TCAACTACCGCACCAGCTGT+TGG + chr4_4:64399456-64399475 Msa0694990:CDS 55.0%
CAACTACCGCACCAGCTGTT+GGG + chr4_4:64399457-64399476 Msa0694990:CDS 55.0%
GATCCATTGCCGGTAGTAGC+CGG - chr4_4:64399689-64399708 None:intergenic 55.0%
! AAGAAGGGTCGAGGTTCTGG+TGG + chr4_4:64399725-64399744 Msa0694990:CDS 55.0%
!! GCACTAGGCGGATTATCTGG+TGG + chr4_4:64399773-64399792 Msa0694990:CDS 55.0%
!! CTAGGCGGATTATCTGGTGG+AGG + chr4_4:64399776-64399795 Msa0694990:CDS 55.0%
AGAGTCTCTGGTGGAGGTAG+AGG + chr4_4:64399806-64399825 Msa0694990:CDS 55.0%
TGGAGGTAGAGGTGGAGCAA+GGG + chr4_4:64399817-64399836 Msa0694990:CDS 55.0%
TTGAGGAGGTCTTCCGGCTG+TGG - chr4_4:64393719-64393738 None:intergenic 60.0%
GGGGAGCTAGCACTCGTGAT+TGG - chr4_4:64393760-64393779 None:intergenic 60.0%
AAAGACGCCTTTCGGGGTGG+GGG - chr4_4:64393795-64393814 None:intergenic 60.0%
GAAAGACGCCTTTCGGGGTG+GGG - chr4_4:64393796-64393815 None:intergenic 60.0%
!! ATAGCGTGACGGGCTCCCAT+TGG + chr4_4:64395846-64395865 Msa0694990:intron 60.0%
!! TAGCGTGACGGGCTCCCATT+GGG + chr4_4:64395847-64395866 Msa0694990:intron 60.0%
TCGTTCTCCAGGAAGCTGGC+AGG - chr4_4:64396142-64396161 None:intergenic 60.0%
! CCGAGGTCCTCTAAGGGACT+TGG + chr4_4:64396557-64396576 Msa0694990:intron 60.0%
GTTGTCAAAGGGGCCGGACA+AGG + chr4_4:64398412-64398431 Msa0694990:intron 60.0%
CTTCTGCAGAGCGAAACGGC+CGG + chr4_4:64399667-64399686 Msa0694990:intron 60.0%
GGAGGAAGAGGCAGAGTCTC+TGG + chr4_4:64399794-64399813 Msa0694990:CDS 60.0%
GGAAGAGGCAGAGTCTCTGG+TGG + chr4_4:64399797-64399816 Msa0694990:CDS 60.0%
AGAGGCAGAGTCTCTGGTGG+AGG + chr4_4:64399800-64399819 Msa0694990:CDS 60.0%
GTCTCTGGTGGAGGTAGAGG+TGG + chr4_4:64399809-64399828 Msa0694990:CDS 60.0%
GTGGAGGTAGAGGTGGAGCA+AGG + chr4_4:64399816-64399835 Msa0694990:CDS 60.0%
GGAGGTAGAGGTGGAGCAAG+GGG + chr4_4:64399818-64399837 Msa0694990:CDS 60.0%
CGCGGAAGAGGAAGTGGAAG+AGG + chr4_4:64399869-64399888 Msa0694990:CDS 60.0%
!! GTGGGGGGGCTTTGGCTTTG+GGG - chr4_4:64393779-64393798 None:intergenic 65.0%
!! GGTGGGGGGGCTTTGGCTTT+GGG - chr4_4:64393780-64393799 None:intergenic 65.0%
AAGACGCCTTTCGGGGTGGG+GGG - chr4_4:64393794-64393813 None:intergenic 65.0%
CAGTCTTGGCAGTTGCGGCC+TGG + chr4_4:64395898-64395917 Msa0694990:intron 65.0%
TGTCCGGCCTGGTCACTGTG+AGG + chr4_4:64397301-64397320 Msa0694990:intron 65.0%
GGGGAGCCATTGAACGACCC+TGG - chr4_4:64397360-64397379 None:intergenic 65.0%
GCGAAACGGCCGGCTACTAC+CGG + chr4_4:64399677-64399696 Msa0694990:CDS 65.0%
GTAGAGGTGGAGCAAGGGGC+CGG + chr4_4:64399822-64399841 Msa0694990:CDS 65.0%
TAGAGGTGGAGCAAGGGGCC+GGG + chr4_4:64399823-64399842 Msa0694990:CDS 65.0%
GGTGGTCGCGGAAGAGGAAG+TGG + chr4_4:64399863-64399882 Msa0694990:CDS 65.0%
! GGGTGGGGGGGCTTTGGCTT+TGG - chr4_4:64393781-64393800 None:intergenic 70.0%
CTTTCGGGGTGGGGGGGCTT+TGG - chr4_4:64393787-64393806 None:intergenic 70.0%
CAAAGCCCCCCCACCCCGAA+AGG + chr4_4:64393785-64393804 Msa0694990:intron 70.0%
AGACGCCTTTCGGGGTGGGG+GGG - chr4_4:64393793-64393812 None:intergenic 70.0%
CGGCCGGCTACTACCGGCAA+TGG + chr4_4:64399683-64399702 Msa0694990:CDS 70.0%
AGAGGTGGAGCAAGGGGCCG+GGG + chr4_4:64399824-64399843 Msa0694990:CDS 70.0%
TTCCGCGACCACCCCAGCCT+TGG - chr4_4:64399856-64399875 None:intergenic 70.0%
GACCACCCCAGCCTTGGCCC+TGG - chr4_4:64399850-64399869 None:intergenic 75.0%
GGCCAAGGCTGGGGTGGTCG+CGG + chr4_4:64399851-64399870 Msa0694990:CDS 75.0%
GGCTGGGGTGGTCGCGGAAG+AGG + chr4_4:64399857-64399876 Msa0694990:CDS 75.0%
! TGGAGCAAGGGGCCGGGGCC+AGG + chr4_4:64399829-64399848 Msa0694990:CDS 80.0%
! GGAGCAAGGGGCCGGGGCCA+GGG + chr4_4:64399830-64399849 Msa0694990:CDS 80.0%
! CCCAGCCTTGGCCCTGGCCC+CGG - chr4_4:64399844-64399863 None:intergenic 80.0%
! CCGGGGCCAGGGCCAAGGCT+GGG + chr4_4:64399841-64399860 Msa0694990:CDS 80.0%
! CGGGGCCAGGGCCAAGGCTG+GGG + chr4_4:64399842-64399861 Msa0694990:CDS 80.0%
! GGCCAGGGCCAAGGCTGGGG+TGG + chr4_4:64399845-64399864 Msa0694990:CDS 80.0%
! AGGGGCCGGGGCCAGGGCCA+AGG + chr4_4:64399836-64399855 Msa0694990:CDS 85.0%
! GCCGGGGCCAGGGCCAAGGC+TGG + chr4_4:64399840-64399859 Msa0694990:CDS 85.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 64392470 64400269 64392470 ID=Msa0694990;Name=Msa0694990
chr4_4 mRNA 64392470 64400269 64392470 ID=Msa0694990-mRNA-1;Parent=Msa0694990;Name=Msa0694990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=159|0.93|0.88|1|0.93|0.88|17|356|549
chr4_4 exon 64392470 64392612 64392470 ID=Msa0694990-mRNA-1:exon:18430;Parent=Msa0694990-mRNA-1
chr4_4 exon 64392727 64392832 64392727 ID=Msa0694990-mRNA-1:exon:18431;Parent=Msa0694990-mRNA-1
chr4_4 exon 64392916 64393056 64392916 ID=Msa0694990-mRNA-1:exon:18432;Parent=Msa0694990-mRNA-1
chr4_4 exon 64393251 64393308 64393251 ID=Msa0694990-mRNA-1:exon:18433;Parent=Msa0694990-mRNA-1
chr4_4 exon 64393399 64393464 64393399 ID=Msa0694990-mRNA-1:exon:18434;Parent=Msa0694990-mRNA-1
chr4_4 exon 64394655 64394755 64394655 ID=Msa0694990-mRNA-1:exon:18435;Parent=Msa0694990-mRNA-1
chr4_4 exon 64394838 64394912 64394838 ID=Msa0694990-mRNA-1:exon:18436;Parent=Msa0694990-mRNA-1
chr4_4 exon 64395022 64395171 64395022 ID=Msa0694990-mRNA-1:exon:18437;Parent=Msa0694990-mRNA-1
chr4_4 exon 64395363 64395437 64395363 ID=Msa0694990-mRNA-1:exon:18438;Parent=Msa0694990-mRNA-1
chr4_4 exon 64395522 64395587 64395522 ID=Msa0694990-mRNA-1:exon:18439;Parent=Msa0694990-mRNA-1
chr4_4 exon 64396147 64396257 64396147 ID=Msa0694990-mRNA-1:exon:18440;Parent=Msa0694990-mRNA-1
chr4_4 exon 64397861 64397950 64397861 ID=Msa0694990-mRNA-1:exon:18441;Parent=Msa0694990-mRNA-1
chr4_4 exon 64398036 64398142 64398036 ID=Msa0694990-mRNA-1:exon:18442;Parent=Msa0694990-mRNA-1
chr4_4 exon 64398971 64399085 64398971 ID=Msa0694990-mRNA-1:exon:18443;Parent=Msa0694990-mRNA-1
chr4_4 exon 64399181 64399246 64399181 ID=Msa0694990-mRNA-1:exon:18444;Parent=Msa0694990-mRNA-1
chr4_4 exon 64399378 64399478 64399378 ID=Msa0694990-mRNA-1:exon:18445;Parent=Msa0694990-mRNA-1
chr4_4 exon 64399676 64400269 64399676 ID=Msa0694990-mRNA-1:exon:18446;Parent=Msa0694990-mRNA-1
chr4_4 five_prime_UTR 64392470 64392612 64392470 ID=Msa0694990-mRNA-1:five_prime_utr;Parent=Msa0694990-mRNA-1
chr4_4 five_prime_UTR 64392727 64392742 64392727 ID=Msa0694990-mRNA-1:five_prime_utr;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64392743 64392832 64392743 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64392916 64393056 64392916 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64393251 64393308 64393251 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64393399 64393464 64393399 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64394655 64394755 64394655 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64394838 64394912 64394838 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64395022 64395171 64395022 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64395363 64395437 64395363 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64395522 64395587 64395522 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64396147 64396257 64396147 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64397861 64397950 64397861 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64398036 64398142 64398036 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64398971 64399085 64398971 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64399181 64399246 64399181 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64399378 64399478 64399378 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 CDS 64399676 64399913 64399676 ID=Msa0694990-mRNA-1:cds;Parent=Msa0694990-mRNA-1
chr4_4 three_prime_UTR 64399914 64400269 64399914 ID=Msa0694990-mRNA-1:three_prime_utr;Parent=Msa0694990-mRNA-1
Gene Sequence

>Msa0694990

ATGACTACTGAACCTTCCGAAGAAGCTGCTTACATCGAGAAGCTCTACCAATATGGCGAGCAACTCAACTCTTCCAAAGACAAATCTCAGAACGTCAAGGATTATCAAGGAATCATAGATACAGCTAACACTAGTGTTAAAGCTAAACAACTCGCTGCACAGCTTATTCCTAAGTTCTTCAAGTTCTTTCCTGAACTTTCCGGTCTTGCACTCAATACTCATCTTGATTTGGATACACCTGAGAATATTGGAAAAATGGTTGATATTCTTGTGCAACTTCTTTCCTCGGATGAATTTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCTCTGCTGAGGCAGGATGTGAAAGCTTCGTTGACGACTTTGTTTAAGCACATTCGTGGTAATGTTGAAGAGCAAAATTCGGATGACCTTAGTCGTGAAAAGGTTATAAATTTTGTTAGAGATAAGGTCTTCCCTATCAAAGCTGAACTGTTGAAGCCCCAAGAGGAAATGGAACGACACATAACCGATCTAATAAAAAATAGTTTAGAAGATGTAACTGGTATAGAATTTCGAATGTTTATGGATTTCCTGAAGAGTTTGAGCCTATTTGGAGAAAAGGCTCCAGCTGAGCGTATGGAAGAGCTGCTTGGAATCATTGAAGGACAAGCTGATTTAGATCTACCGTTCAATGTTGCTGATGCAAATCAAACAGATCATATTCATAGGTTGATATCATGCCTTCACATGGCACTTCCAATTGTTGTGAGGGGTGCATCTAGCAGCAAATTTATTAACTTCATAAACGACTATATTATACCTGTTTTTGACCAGCTTCCTGGAGAACGAAAAGTAGATTTGCTCAGAAACCTTGCAGAGTTTTCACCTTTCACAACACCACAAGATTCACGACAAATGCTTCCTTCTATTGTTCAGTTGCTGAAGAAATACATGACTTGGAAGAAAACCGGAGAAGAGATGAATTTTACATATGTTGAGTGCTTGTTGTACACATTTCATCACCTAGCTCAAAAGGTTCCTAATGCCACCAATAGTTTATGTGGTTACAAAATTGTTACTGGTCAGCCATCTGATAGGCTTGGAGAAGACTTCTCAGAGCAATATGATGATTTTACCGAGAGATTGAAAAACGTTGAGGAGTTCACCCGGGCTACAATCAAGAAACTAACTCAAGGAATGGCTGAAAACAACAAATCTATGGCAGATGCTAAAACTGATGAAGAAAAGGAAAAAATTAAAACTAAAAAACAGAATGCTACAACTGGGCTGCGTACCTGCAATAATATTTTGACGATGACAAAGCCATTGCACGCAAAAGCACCTTCTTTTATTGGAGATAAGAGAATCAACCTTTCTTGGAAAGAAGCAACCAAATCTGCATCAACTACCGCACCAGCTGTTGGAGCGAAACGGCCGGCTACTACCGGCAATGGATCCAACAATATTGCATTGAAGAAGGGTCGAGGTTCTGGTGGTATGCAAAATCAACTTGTCAATAGAGCACTAGGCGGATTATCTGGTGGAGGAAGAGGCAGAGTCTCTGGTGGAGGTAGAGGTGGAGCAAGGGGCCGGGGCCAGGGCCAAGGCTGGGGTGGTCGCGGAAGAGGAAGTGGAAGAGGTAGAGGTAGAGGGTATTGGTGA
Protein sequence

>Msa0694990

MTTEPSEEAAYIEKLYQYGEQLNSSKDKSQNVKDYQGIIDTANTSVKAKQLAAQLIPKFFKFFPELSGLALNTHLDLDTPENIGKMVDILVQLLSSDEFVERDAVHKALMSLLRQDVKASLTTLFKHIRGNVEEQNSDDLSREKVINFVRDKVFPIKAELLKPQEEMERHITDLIKNSLEDVTGIEFRMFMDFLKSLSLFGEKAPAERMEELLGIIEGQADLDLPFNVADANQTDHIHRLISCLHMALPIVVRGASSSKFINFINDYIIPVFDQLPGERKVDLLRNLAEFSPFTTPQDSRQMLPSIVQLLKKYMTWKKTGEEMNFTYVECLLYTFHHLAQKVPNATNSLCGYKIVTGQPSDRLGEDFSEQYDDFTERLKNVEEFTRATIKKLTQGMAENNKSMADAKTDEEKEKIKTKKQNATTGLRTCNNILTMTKPLHAKAPSFIGDKRINLSWKEATKSASTTAPAVGAKRPATTGNGSNNIALKKGRGSGGMQNQLVNRALGGLSGGGRGRVSGGGRGGARGRGQGQGWGGRGRGSGRGRGRGYW*