AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303580 MtrunA17_Chr4g0071751 98.077 52 1 0 2 53 325 376 7.11e-28 108
Msa1303580 MtrunA17_Chr5g0393501 31.795 195 109 4 57 227 45 239 9.17e-27 103
Msa1303580 MtrunA17_Chr4g0044671 26.667 180 111 2 57 215 28 207 7.56e-13 65.5
Msa1303580 MtrunA17_Chr4g0034781 26.111 180 112 2 57 215 22 201 2.83e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303580 AT2G19270.1 66.667 54 16 1 2 53 305 358 1.35e-14 72.4

Find 50 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCCCTTTGCCGAAAC+AGG 0.276144 8_3:-66763583 None:intergenic
AGGAATTTGCCGAAAGTATC+AGG 0.335653 8_3:-66766028 None:intergenic
AATCGTGATGTTTCACTCTA+AGG 0.341127 8_3:-66766048 None:intergenic
GCTGAAACTCAAGCGAAATA+TGG 0.358968 8_3:+66763712 Msa1303580:CDS
CTTAAGAGGAAGCATCAAAT+TGG 0.363500 8_3:+66763616 Msa1303580:CDS
CGGTTGACTAACTGATTTGT+TGG 0.375323 8_3:-66765674 None:intergenic
TTCCTCTTAAGCAGCTTTGA+AGG 0.393506 8_3:-66763604 None:intergenic
TAGGAACTACCTGATACTTT+CGG 0.400617 8_3:+66766019 Msa1303580:intron
TCCGAACATCACATTTGGTA+TGG 0.417548 8_3:-66766134 None:intergenic
ATCTACTTCCACCAAGGTAC+TGG 0.428620 8_3:-66765765 None:intergenic
TTGTAGCCTGTTTCGGCAAA+GGG 0.441001 8_3:+66763577 Msa1303580:intron
CCGAACATCACATTTGGTAT+GGG 0.451435 8_3:-66766133 None:intergenic
GAGCAATGGCACTTGCTAGA+TGG 0.455163 8_3:+66765625 Msa1303580:CDS
AGCCTTCAAAGCTGCTTAAG+AGG 0.459188 8_3:+66763602 Msa1303580:CDS
TGCCGCACTCATGGAATGAT+AGG 0.462626 8_3:-66765836 None:intergenic
TTGTGCTGCCAATGGTATTG+AGG 0.463000 8_3:+66766174 Msa1303580:CDS
CCAAATGTGATGTTCGGAAA+AGG 0.475440 8_3:+66766139 Msa1303580:CDS
TAAATATTTGTACGAGCTAC+CGG 0.476243 8_3:+66765603 Msa1303580:CDS
CCCATACCAAATGTGATGTT+CGG 0.477035 8_3:+66766133 Msa1303580:CDS
ACACGATGCTGCCGCACTCA+TGG 0.487735 8_3:-66765845 None:intergenic
CTTGCGGAACGACGTGCAAA+GGG 0.500101 8_3:+66763676 Msa1303580:CDS
TGTGCTGCCAATGGTATTGA+GGG 0.501205 8_3:+66766175 Msa1303580:CDS
ATTATTGCTTTCCAGTACCT+TGG 0.503165 8_3:+66765754 Msa1303580:CDS
ATTGTAGCCTGTTTCGGCAA+AGG 0.506313 8_3:+66763576 Msa1303580:intron
ACGGAAATGATATTGTCATA+AGG 0.522697 8_3:-66766088 None:intergenic
TCTAGCAAGTGCCATTGCTC+CGG 0.534587 8_3:-66765622 None:intergenic
AACCGTTGTTGACAGATGGT+TGG 0.540648 8_3:+66765692 Msa1303580:CDS
TGATAGGGTGGATAATCAGC+TGG 0.541144 8_3:-66765820 None:intergenic
ATTGCTTTCCAGTACCTTGG+TGG 0.549152 8_3:+66765757 Msa1303580:CDS
ACTTGCGGAACGACGTGCAA+AGG 0.550967 8_3:+66763675 Msa1303580:CDS
CGAACATCACATTTGGTATG+GGG 0.552019 8_3:-66766132 None:intergenic
AGTCAACCGTTGTTGACAGA+TGG 0.554695 8_3:+66765688 Msa1303580:CDS
TTTCGCTTGAGTTTCAGCCT+TGG 0.562366 8_3:-66763707 None:intergenic
TTTCAAGTGCAAGTGCGTCA+TGG 0.567746 8_3:+66766213 Msa1303580:CDS
GTCTCCGCCCTCAATACCAT+TGG 0.581950 8_3:-66766182 None:intergenic
GTCTGTATATTTGAGTCTCA+CGG 0.587084 8_3:-66766107 None:intergenic
TGGCACTTGCTAGATGGTGA+TGG 0.587936 8_3:+66765631 Msa1303580:CDS
TATCCAGATAGGAACTTCAA+AGG 0.596572 8_3:-66765875 None:intergenic
ATGTGATGTTCGGAAAAGGT+TGG 0.606400 8_3:+66766143 Msa1303580:CDS
GGCACTTGCTAGATGGTGAT+GGG 0.608333 8_3:+66765632 Msa1303580:CDS
TGTACGAGCTACCGGAGCAA+TGG 0.612121 8_3:+66765611 Msa1303580:CDS
AAACTCAAGCGAAATATGGA+TGG 0.616650 8_3:+66763716 Msa1303580:CDS
ACAAAATGAAATGAAACTTG+CGG 0.616913 8_3:+66763660 Msa1303580:CDS
GCCGCACTCATGGAATGATA+GGG 0.629158 8_3:-66765835 None:intergenic
TGCAAAGGGCATGCTTACCA+AGG 0.636531 8_3:+66763690 Msa1303580:CDS
ACCCTATCATTCCATGAGTG+CGG 0.640367 8_3:+66765834 Msa1303580:CDS
GCACTCATGGAATGATAGGG+TGG 0.649652 8_3:-66765832 None:intergenic
CTCCAACCATCTGTCAACAA+CGG 0.673689 8_3:-66765694 None:intergenic
TTTGAAATCTACTTCCACCA+AGG 0.681040 8_3:-66765771 None:intergenic
GCTGCCAATGGTATTGAGGG+CGG 0.739556 8_3:+66766178 Msa1303580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATCATAAAAACATATA+AGG + chr8_3:66764630-66764649 Msa1303580:intron 10.0%
!!! TGCATTTTTTAAAAAGAATT+TGG - chr8_3:66762467-66762486 None:intergenic 15.0%
!! AAAAAATGCAAAATTGAATT+TGG + chr8_3:66762477-66762496 Msa1303580:intron 15.0%
!! ATGTATTATAATGAATTGTT+CGG - chr8_3:66763189-66763208 None:intergenic 15.0%
!! TATAATATATAATGTTACTG+TGG + chr8_3:66763904-66763923 Msa1303580:intron 15.0%
!!! AAACTTTTTAATACGAAATT+TGG - chr8_3:66764093-66764112 None:intergenic 15.0%
!!! ACTTTGTTTTTTAAATAGAA+CGG + chr8_3:66764561-66764580 Msa1303580:intron 15.0%
!! AAAAAACAATAAACAATCTT+CGG - chr8_3:66765917-66765936 None:intergenic 15.0%
!!! TATTTTTGTGATTTACAGAA+GGG + chr8_3:66762151-66762170 Msa1303580:intron 20.0%
!! GAATTATGCTATAATATTGT+TGG + chr8_3:66762783-66762802 Msa1303580:intron 20.0%
!! GGCTAATATTATCTTATATA+GGG - chr8_3:66762856-66762875 None:intergenic 20.0%
!! TGGCTAATATTATCTTATAT+AGG - chr8_3:66762857-66762876 None:intergenic 20.0%
!!! ACATGTTGATAATTTTGTAA+TGG - chr8_3:66762877-66762896 None:intergenic 20.0%
!!! TTTTTTTTTTTGCATGCATA+TGG - chr8_3:66762963-66762982 None:intergenic 20.0%
!! AAAAAAAAAAAACCTATGTG+AGG + chr8_3:66762972-66762991 Msa1303580:intron 20.0%
!! TGTATTATAATGAATTGTTC+GGG - chr8_3:66763188-66763207 None:intergenic 20.0%
!! ACTGTTGACAAAAAAATTAA+AGG + chr8_3:66763364-66763383 Msa1303580:intron 20.0%
!! CTTGATAAATCATGTTATAT+TGG - chr8_3:66763785-66763804 None:intergenic 20.0%
!!! TGAACCTTTCATTTTTTTTT+TGG + chr8_3:66764035-66764054 Msa1303580:intron 20.0%
!!! GAACCTTTCATTTTTTTTTT+GGG + chr8_3:66764036-66764055 Msa1303580:intron 20.0%
!! ATGAAAAACAAAGATATTGT+CGG - chr8_3:66764432-66764451 None:intergenic 20.0%
!! TATGCAAGACAAAAAAAAAA+TGG - chr8_3:66764504-66764523 None:intergenic 20.0%
!!! GTTTTCTTTTTCAACATATT+TGG - chr8_3:66764712-66764731 None:intergenic 20.0%
!!! AAGTCTAGCTTTTATAATAA+AGG - chr8_3:66764893-66764912 None:intergenic 20.0%
!! ATATCAAATGCAATTAAAGT+CGG + chr8_3:66765101-66765120 Msa1303580:intron 20.0%
!! TTAACTTTAGTGGTAAAATT+TGG - chr8_3:66765348-66765367 None:intergenic 20.0%
!! TTTCTATTTAAATACGATGA+AGG + chr8_3:66765429-66765448 Msa1303580:intron 20.0%
!! TTCTATTTAAATACGATGAA+GGG + chr8_3:66765430-66765449 Msa1303580:intron 20.0%
!! TTAGACAGTGTATTAAAAAA+AGG - chr8_3:66765545-66765564 None:intergenic 20.0%
!! GGTTTATATATGCTATAATA+AGG + chr8_3:66765958-66765977 Msa1303580:intron 20.0%
!!! GTATTTTTGTGATTTACAGA+AGG + chr8_3:66762150-66762169 Msa1303580:intron 25.0%
!! TTTTGATATGCTATCACATT+TGG + chr8_3:66762187-66762206 Msa1303580:intron 25.0%
! TTTAAAAAGAATTTGGACAG+AGG - chr8_3:66762460-66762479 None:intergenic 25.0%
! AGACGTTTAAAAATATAAGC+AGG - chr8_3:66762673-66762692 None:intergenic 25.0%
! TGTTAATTCATCCTTAAATG+TGG + chr8_3:66763038-66763057 Msa1303580:intron 25.0%
! GTATTATAATGAATTGTTCG+GGG - chr8_3:66763187-66763206 None:intergenic 25.0%
!!! TCTTGAAGATTTGAGTTTTA+TGG - chr8_3:66763440-66763459 None:intergenic 25.0%
! AACTCAAATCTTCAAGAAAT+AGG + chr8_3:66763443-66763462 Msa1303580:intron 25.0%
! ACAAAATGAAATGAAACTTG+CGG + chr8_3:66763660-66763679 Msa1303580:CDS 25.0%
!! ATGCAATTTTATTCATCACA+AGG - chr8_3:66763952-66763971 None:intergenic 25.0%
!!! TTTTTTTTGGGCGTAAAAAA+TGG + chr8_3:66764048-66764067 Msa1303580:intron 25.0%
!!! TTTTTTTGGGCGTAAAAAAT+GGG + chr8_3:66764049-66764068 Msa1303580:intron 25.0%
! AAACAAACTAAGGCTTATAT+AGG - chr8_3:66764155-66764174 None:intergenic 25.0%
! GAAAATGAACAAACAAACTA+AGG - chr8_3:66764165-66764184 None:intergenic 25.0%
! TTTAAAAGTGGATATAGCAA+AGG + chr8_3:66764244-66764263 Msa1303580:intron 25.0%
! TTAAAAGTGGATATAGCAAA+GGG + chr8_3:66764245-66764264 Msa1303580:intron 25.0%
!!! TCTTGGTATATCAGTTTTTT+TGG - chr8_3:66764274-66764293 None:intergenic 25.0%
! ATATACCAAGATATATTCGA+TGG + chr8_3:66764283-66764302 Msa1303580:intron 25.0%
! TTAGTCATTAGTACATGTTT+AGG - chr8_3:66764978-66764997 None:intergenic 25.0%
! TTTGATTAGCAATTAGTGTA+GGG - chr8_3:66765136-66765155 None:intergenic 25.0%
!!! TTTTGATTAGCAATTAGTGT+AGG - chr8_3:66765137-66765156 None:intergenic 25.0%
! TCATGCACATAATAAGTTAA+CGG - chr8_3:66765459-66765478 None:intergenic 25.0%
!! ATGTGCATGAAAATTACTTT+TGG + chr8_3:66765469-66765488 Msa1303580:intron 25.0%
!! TTTTGATGCTATTCATTTAG+AGG + chr8_3:66765937-66765956 Msa1303580:intron 25.0%
TCATTGCTGTGATTGTAATT+TGG + chr8_3:66762047-66762066 Msa1303580:intron 30.0%
ATTATTCAGCAGAATATGCA+TGG + chr8_3:66762371-66762390 Msa1303580:intron 30.0%
TTATTCAGCAGAATATGCAT+GGG + chr8_3:66762372-66762391 Msa1303580:intron 30.0%
TGCAAAATTGAATTTGGAGA+TGG + chr8_3:66762483-66762502 Msa1303580:intron 30.0%
AAAATTGAATTTGGAGATGG+AGG + chr8_3:66762486-66762505 Msa1303580:intron 30.0%
TGATATCAGTTACACTTACA+TGG - chr8_3:66762599-66762618 None:intergenic 30.0%
TGTAACTGATATCATCTAGT+AGG + chr8_3:66762605-66762624 Msa1303580:intron 30.0%
TCATCTAGTAGGAAAAAACA+TGG + chr8_3:66762616-66762635 Msa1303580:intron 30.0%
!! ATTCTTTTGACTGTTGTAAG+AGG - chr8_3:66762767-66762786 None:intergenic 30.0%
ACTGTTCTATAATGCATTGT+TGG + chr8_3:66762806-66762825 Msa1303580:intron 30.0%
TGTCAACAGTAACAATTAGT+TGG - chr8_3:66763354-66763373 None:intergenic 30.0%
! CTTCAAGAAATAGGAGATTT+TGG + chr8_3:66763452-66763471 Msa1303580:intron 30.0%
!!! AAATAGGAGATTTTGGTTAG+TGG + chr8_3:66763459-66763478 Msa1303580:intron 30.0%
AATATGAACATACTCTTCAG+GGG - chr8_3:66763526-66763545 None:intergenic 30.0%
CAATATGAACATACTCTTCA+GGG - chr8_3:66763527-66763546 None:intergenic 30.0%
ACAATATGAACATACTCTTC+AGG - chr8_3:66763528-66763547 None:intergenic 30.0%
! TTTTCTATTGTAGCCTGTTT+CGG + chr8_3:66763570-66763589 Msa1303580:intron 30.0%
TACAGAACAGTAAAACACAA+GGG - chr8_3:66763836-66763855 None:intergenic 30.0%
ATACAGAACAGTAAAACACA+AGG - chr8_3:66763837-66763856 None:intergenic 30.0%
!! TTCTTTTGAATCAGCTTTAG+AGG + chr8_3:66763976-66763995 Msa1303580:intron 30.0%
TGAAAGGTTCAAAGAGTAAA+TGG - chr8_3:66764026-66764045 None:intergenic 30.0%
ACGCCCAAAAAAAAAATGAA+AGG - chr8_3:66764042-66764061 None:intergenic 30.0%
!! TGTTAGGCAGTTTTTAAAAG+TGG + chr8_3:66764232-66764251 Msa1303580:intron 30.0%
ACAAATGGTACTTTAGACAA+GGG - chr8_3:66764342-66764361 None:intergenic 30.0%
AACTCTATTTGTAGGACAAA+TGG - chr8_3:66764357-66764376 None:intergenic 30.0%
ATTTGTCCTACAAATAGAGT+TGG + chr8_3:66764356-66764375 Msa1303580:intron 30.0%
TAGTATCCAACTCTATTTGT+AGG - chr8_3:66764365-66764384 None:intergenic 30.0%
AATCTATCATGTATGCTGTT+TGG - chr8_3:66764534-66764553 None:intergenic 30.0%
AAAACATATAAGGAGTGATG+TGG + chr8_3:66764640-66764659 Msa1303580:intron 30.0%
! TTATAAAAGCTAGACTTGCT+TGG + chr8_3:66764896-66764915 Msa1303580:intron 30.0%
TCATTAGTACATGTTTAGGA+GGG - chr8_3:66764974-66764993 None:intergenic 30.0%
!! ATTGTTAGGCTTTGAATCAA+CGG - chr8_3:66765045-66765064 None:intergenic 30.0%
!! TATTATGAGAGAGCATTGTT+AGG - chr8_3:66765059-66765078 None:intergenic 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr8_3:66765135-66765154 None:intergenic 30.0%
!!! GTACGAAGAACACTTTTTTA+AGG - chr8_3:66765229-66765248 None:intergenic 30.0%
ATCTTCCTATCACTCTATTT+CGG - chr8_3:66765301-66765320 None:intergenic 30.0%
ATAGGAAGATATGCGTTTAA+AGG + chr8_3:66765311-66765330 Msa1303580:intron 30.0%
! GAACGAACATTTAACTTTAG+TGG - chr8_3:66765358-66765377 None:intergenic 30.0%
!! GCATGAAAATTACTTTTGGT+TGG + chr8_3:66765473-66765492 Msa1303580:intron 30.0%
TAATACACTGTCTAACTTCT+TGG + chr8_3:66765550-66765569 Msa1303580:intron 30.0%
TAAATATTTGTACGAGCTAC+CGG + chr8_3:66765603-66765622 Msa1303580:CDS 30.0%
ACGGAAATGATATTGTCATA+AGG - chr8_3:66766091-66766110 None:intergenic 30.0%
TTGCTGTGATTGTAATTTGG+TGG + chr8_3:66762050-66762069 Msa1303580:intron 35.0%
ATGCTTGAGCATTAGAATTC+TGG + chr8_3:66762416-66762435 Msa1303580:intron 35.0%
! GATAATGTGACCCTTTTAGT+TGG + chr8_3:66762541-66762560 Msa1303580:intron 35.0%
TTGCATAGGCATCCAAAATA+TGG - chr8_3:66762706-66762725 None:intergenic 35.0%
!! TCAACATGTGTCGATTTAAG+TGG + chr8_3:66762888-66762907 Msa1303580:intron 35.0%
AAAAAACCTATGTGAGGAGT+AGG + chr8_3:66762978-66762997 Msa1303580:intron 35.0%
AAAAACCTATGTGAGGAGTA+GGG + chr8_3:66762979-66762998 Msa1303580:intron 35.0%
TGACATCACATAATACTGCT+AGG - chr8_3:66763417-66763436 None:intergenic 35.0%
!! CTTAAGAGGAAGCATCAAAT+TGG + chr8_3:66763616-66763635 Msa1303580:CDS 35.0%
AAACTCAAGCGAAATATGGA+TGG + chr8_3:66763716-66763735 Msa1303580:CDS 35.0%
! GAAATATGGATGGTGATGTA+GGG + chr8_3:66763726-66763745 Msa1303580:intron 35.0%
! AAATATGGATGGTGATGTAG+GGG + chr8_3:66763727-66763746 Msa1303580:intron 35.0%
AAAATGCTCTCGAGTAGAAA+GGG + chr8_3:66764203-66764222 Msa1303580:intron 35.0%
TGTTGCCATCGAATATATCT+TGG - chr8_3:66764291-66764310 None:intergenic 35.0%
GACAAATGGTACTTTAGACA+AGG - chr8_3:66764343-66764362 None:intergenic 35.0%
TTTAGGAGGGAAAAATGCTA+GGG - chr8_3:66764961-66764980 None:intergenic 35.0%
GTCATTAGTACATGTTTAGG+AGG - chr8_3:66764975-66764994 None:intergenic 35.0%
GTGTGAAAATAGAGGTTGAA+CGG - chr8_3:66765012-66765031 None:intergenic 35.0%
GTGATCAAGTGTGAAAATAG+AGG - chr8_3:66765020-66765039 None:intergenic 35.0%
!! TTGTTAGGCTTTGAATCAAC+GGG - chr8_3:66765044-66765063 None:intergenic 35.0%
TCTCGGATAACACTTTCTAA+GGG - chr8_3:66765173-66765192 None:intergenic 35.0%
ATCTCGGATAACACTTTCTA+AGG - chr8_3:66765174-66765193 None:intergenic 35.0%
ATTATTGCTTTCCAGTACCT+TGG + chr8_3:66765754-66765773 Msa1303580:CDS 35.0%
! TTTGAAATCTACTTCCACCA+AGG - chr8_3:66765774-66765793 None:intergenic 35.0%
TATCCAGATAGGAACTTCAA+AGG - chr8_3:66765878-66765897 None:intergenic 35.0%
TTGAAGTTCCTATCTGGATA+TGG + chr8_3:66765878-66765897 Msa1303580:intron 35.0%
TAGGAACTACCTGATACTTT+CGG + chr8_3:66766019-66766038 Msa1303580:intron 35.0%
AATCGTGATGTTTCACTCTA+AGG - chr8_3:66766051-66766070 None:intergenic 35.0%
GTCTGTATATTTGAGTCTCA+CGG - chr8_3:66766110-66766129 None:intergenic 35.0%
GATATGCTATCACATTTGGC+TGG + chr8_3:66762191-66762210 Msa1303580:intron 40.0%
! CCTTTTGTCTATTGTCCTAG+TGG - chr8_3:66762338-66762357 None:intergenic 40.0%
CCACTAGGACAATAGACAAA+AGG + chr8_3:66762335-66762354 Msa1303580:intron 40.0%
TTTCCAACACTAGCTGAAGA+GGG - chr8_3:66762516-66762535 None:intergenic 40.0%
ATTTCCAACACTAGCTGAAG+AGG - chr8_3:66762517-66762536 None:intergenic 40.0%
TGCTCACTCTCCAACTAAAA+GGG - chr8_3:66762554-66762573 None:intergenic 40.0%
ATGCTCACTCTCCAACTAAA+AGG - chr8_3:66762555-66762574 None:intergenic 40.0%
! CTATGCGTGTTGCCATATTT+TGG + chr8_3:66762691-66762710 Msa1303580:intron 40.0%
GATTTCCTCTGTTGTTGCAT+AGG - chr8_3:66762720-66762739 None:intergenic 40.0%
!! CATGTGTCGATTTAAGTGGT+AGG + chr8_3:66762892-66762911 Msa1303580:intron 40.0%
TTAACATCCCTACTCCCAAT+TGG - chr8_3:66763024-66763043 None:intergenic 40.0%
CAGGGGAGAAGAAAAATTAC+AGG - chr8_3:66763509-66763528 None:intergenic 40.0%
! TTCCTCTTAAGCAGCTTTGA+AGG - chr8_3:66763607-66763626 None:intergenic 40.0%
GCTGAAACTCAAGCGAAATA+TGG + chr8_3:66763712-66763731 Msa1303580:CDS 40.0%
! CGAAATATGGATGGTGATGT+AGG + chr8_3:66763725-66763744 Msa1303580:intron 40.0%
!! ACTCTGTTTTTCAGTGCAGA+GGG + chr8_3:66763875-66763894 Msa1303580:intron 40.0%
!! TTGAATCAGCTTTAGAGGTC+AGG + chr8_3:66763981-66764000 Msa1303580:intron 40.0%
!! AGCTTTAGAGGTCAGGTTTA+TGG + chr8_3:66763988-66764007 Msa1303580:intron 40.0%
AGAGGTCAGGTTTATGGATA+TGG + chr8_3:66763994-66764013 Msa1303580:intron 40.0%
TAGGTGCCAGAAATGGTAAA+GGG - chr8_3:66764136-66764155 None:intergenic 40.0%
ATAGGTGCCAGAAATGGTAA+AGG - chr8_3:66764137-66764156 None:intergenic 40.0%
GCTTATATAGGTGCCAGAAA+TGG - chr8_3:66764143-66764162 None:intergenic 40.0%
CAAAATGCTCTCGAGTAGAA+AGG + chr8_3:66764202-66764221 Msa1303580:intron 40.0%
TAATAGAAGCAAGCAACACG+TGG + chr8_3:66764740-66764759 Msa1303580:intron 40.0%
!!! CGTGGTGTGCTTTTTTCTAA+TGG + chr8_3:66764758-66764777 Msa1303580:intron 40.0%
ATGTACCAACGTCATTGACA+TGG + chr8_3:66764837-66764856 Msa1303580:intron 40.0%
GGGAAAAATGCTAGGGATTA+GGG - chr8_3:66764954-66764973 None:intergenic 40.0%
AGGGAAAAATGCTAGGGATT+AGG - chr8_3:66764955-66764974 None:intergenic 40.0%
GTTTAGGAGGGAAAAATGCT+AGG - chr8_3:66764962-66764981 None:intergenic 40.0%
GTTATCCGAGATAGAGTGAT+AGG + chr8_3:66765182-66765201 Msa1303580:intron 40.0%
TTCCTCCTATCACTCTATCT+CGG - chr8_3:66765190-66765209 None:intergenic 40.0%
GCTATCCGAAATAGAGTGAT+AGG + chr8_3:66765293-66765312 Msa1303580:intron 40.0%
CACAGTGCATGTAGAAAATC+AGG + chr8_3:66765380-66765399 Msa1303580:intron 40.0%
!! CGGTTGACTAACTGATTTGT+TGG - chr8_3:66765677-66765696 None:intergenic 40.0%
!! GTACCTTTGAAGTTCCTATC+TGG + chr8_3:66765872-66765891 Msa1303580:intron 40.0%
!! AGGAATTTGCCGAAAGTATC+AGG - chr8_3:66766031-66766050 None:intergenic 40.0%
CGAACATCACATTTGGTATG+GGG - chr8_3:66766135-66766154 None:intergenic 40.0%
CCGAACATCACATTTGGTAT+GGG - chr8_3:66766136-66766155 None:intergenic 40.0%
CCCATACCAAATGTGATGTT+CGG + chr8_3:66766133-66766152 Msa1303580:CDS 40.0%
TCCGAACATCACATTTGGTA+TGG - chr8_3:66766137-66766156 None:intergenic 40.0%
! CCTTTTCCGAACATCACATT+TGG - chr8_3:66766142-66766161 None:intergenic 40.0%
CCAAATGTGATGTTCGGAAA+AGG + chr8_3:66766139-66766158 Msa1303580:CDS 40.0%
ATGTGATGTTCGGAAAAGGT+TGG + chr8_3:66766143-66766162 Msa1303580:CDS 40.0%
!! AATTTGGTGGTGACCAGTTC+TGG + chr8_3:66762063-66762082 Msa1303580:intron 45.0%
!! AAGCGTTGGGTACTCTATCT+TGG + chr8_3:66762110-66762129 Msa1303580:intron 45.0%
! TATGTTGAGGGGTTAGCATC+TGG + chr8_3:66762258-66762277 Msa1303580:intron 45.0%
TGTCTATTGTCCTAGTGGCT+AGG - chr8_3:66762333-66762352 None:intergenic 45.0%
ATCATCCCTACTCCTCACAT+AGG - chr8_3:66762987-66763006 None:intergenic 45.0%
TCCTTAAATGTGGATCCACG+CGG + chr8_3:66763048-66763067 Msa1303580:intron 45.0%
ATTGTAGCCTGTTTCGGCAA+AGG + chr8_3:66763576-66763595 Msa1303580:intron 45.0%
TTGTAGCCTGTTTCGGCAAA+GGG + chr8_3:66763577-66763596 Msa1303580:intron 45.0%
AGCCTTCAAAGCTGCTTAAG+AGG + chr8_3:66763602-66763621 Msa1303580:CDS 45.0%
TTTCGCTTGAGTTTCAGCCT+TGG - chr8_3:66763710-66763729 None:intergenic 45.0%
!! CACTCTGTTTTTCAGTGCAG+AGG + chr8_3:66763874-66763893 Msa1303580:intron 45.0%
AGGTGCCAGAAATGGTAAAG+GGG - chr8_3:66764135-66764154 None:intergenic 45.0%
! GTAGAAAGGGCGTAACTGTT+AGG + chr8_3:66764216-66764235 Msa1303580:intron 45.0%
CTCAACCATGTCAATGACGT+TGG - chr8_3:66764845-66764864 None:intergenic 45.0%
GGGCAAAGAAGGGTGAATTA+GGG - chr8_3:66764934-66764953 None:intergenic 45.0%
AGGGCAAAGAAGGGTGAATT+AGG - chr8_3:66764935-66764954 None:intergenic 45.0%
CTAGGGATTAGGGCAAAGAA+GGG - chr8_3:66764944-66764963 None:intergenic 45.0%
ATCCGAGATAGAGTGATAGG+AGG + chr8_3:66765185-66765204 Msa1303580:intron 45.0%
AGTCAACCGTTGTTGACAGA+TGG + chr8_3:66765688-66765707 Msa1303580:CDS 45.0%
AACCGTTGTTGACAGATGGT+TGG + chr8_3:66765692-66765711 Msa1303580:CDS 45.0%
CTCCAACCATCTGTCAACAA+CGG - chr8_3:66765697-66765716 None:intergenic 45.0%
ATTGCTTTCCAGTACCTTGG+TGG + chr8_3:66765757-66765776 Msa1303580:CDS 45.0%
ATCTACTTCCACCAAGGTAC+TGG - chr8_3:66765768-66765787 None:intergenic 45.0%
TGATAGGGTGGATAATCAGC+TGG - chr8_3:66765823-66765842 None:intergenic 45.0%
ACCCTATCATTCCATGAGTG+CGG + chr8_3:66765834-66765853 Msa1303580:CDS 45.0%
TCGTCGATCCATATCCAGAT+AGG - chr8_3:66765889-66765908 None:intergenic 45.0%
! ACGAGTTTTTGTGCTGCCAA+TGG + chr8_3:66766166-66766185 Msa1303580:CDS 45.0%
TTGTGCTGCCAATGGTATTG+AGG + chr8_3:66766174-66766193 Msa1303580:CDS 45.0%
! TGTGCTGCCAATGGTATTGA+GGG + chr8_3:66766175-66766194 Msa1303580:CDS 45.0%
! TTTCAAGTGCAAGTGCGTCA+TGG + chr8_3:66766213-66766232 Msa1303580:CDS 45.0%
!!! ATATTTTTTTTCTTTTTTTT+AGG + chr8_3:66766000-66766019 Msa1303580:intron 5.0%
CTTAACTGCCTCCAGGAACA+AGG - chr8_3:66762093-66762112 None:intergenic 50.0%
ACGCAATGGTCAGGAAGCTA+AGG + chr8_3:66762220-66762239 Msa1303580:intron 50.0%
CGCAATGGTCAGGAAGCTAA+GGG + chr8_3:66762221-66762240 Msa1303580:intron 50.0%
AAGCCACGCGCTATATGTTG+AGG + chr8_3:66762245-66762264 Msa1303580:intron 50.0%
AGCCACGCGCTATATGTTGA+GGG + chr8_3:66762246-66762265 Msa1303580:intron 50.0%
! TTGAGGGGTTAGCATCTGGT+AGG + chr8_3:66762262-66762281 Msa1303580:intron 50.0%
! GGTAGGAAGCACAGTGTTAC+TGG + chr8_3:66762279-66762298 Msa1303580:intron 50.0%
CTATTGTCCTAGTGGCTAGG+AGG - chr8_3:66762330-66762349 None:intergenic 50.0%
GTTCCCTCTTCAGCTAGTGT+TGG + chr8_3:66762510-66762529 Msa1303580:intron 50.0%
GGATGCCTATGCAACAACAG+AGG + chr8_3:66762712-66762731 Msa1303580:intron 50.0%
TCGCATGCCAATTGGGAGTA+GGG + chr8_3:66763014-66763033 Msa1303580:intron 50.0%
CCTTAAATGTGGATCCACGC+GGG + chr8_3:66763049-66763068 Msa1303580:intron 50.0%
TCTGTTTGGAGATCCACAGC+CGG + chr8_3:66763078-66763097 Msa1303580:intron 50.0%
! TGCAAAGGGCATGCTTACCA+AGG + chr8_3:66763690-66763709 Msa1303580:CDS 50.0%
! GATGGTGATGTAGGGGATGA+TGG + chr8_3:66763734-66763753 Msa1303580:intron 50.0%
AGAGCCCCCTTTACCATTTC+TGG + chr8_3:66764127-66764146 Msa1303580:intron 50.0%
GGTGCCAGAAATGGTAAAGG+GGG - chr8_3:66764134-66764153 None:intergenic 50.0%
GCTAGGGATTAGGGCAAAGA+AGG - chr8_3:66764945-66764964 None:intergenic 50.0%
! TCTAGCAAGTGCCATTGCTC+CGG - chr8_3:66765625-66765644 None:intergenic 50.0%
! GAGCAATGGCACTTGCTAGA+TGG + chr8_3:66765625-66765644 Msa1303580:CDS 50.0%
! TGGCACTTGCTAGATGGTGA+TGG + chr8_3:66765631-66765650 Msa1303580:CDS 50.0%
! GGCACTTGCTAGATGGTGAT+GGG + chr8_3:66765632-66765651 Msa1303580:CDS 50.0%
GCACTCATGGAATGATAGGG+TGG - chr8_3:66765835-66765854 None:intergenic 50.0%
GCCGCACTCATGGAATGATA+GGG - chr8_3:66765838-66765857 None:intergenic 50.0%
TGCCGCACTCATGGAATGAT+AGG - chr8_3:66765839-66765858 None:intergenic 50.0%
GGAACAAGGAGGACCAGAAC+TGG - chr8_3:66762079-66762098 None:intergenic 55.0%
GTTCTGGTCCTCCTTGTTCC+TGG + chr8_3:66762079-66762098 Msa1303580:intron 55.0%
AACTGCCTCCAGGAACAAGG+AGG - chr8_3:66762090-66762109 None:intergenic 55.0%
TCCTGGAGGCAGTTAAGCGT+TGG + chr8_3:66762096-66762115 Msa1303580:intron 55.0%
CCTGGAGGCAGTTAAGCGTT+GGG + chr8_3:66762097-66762116 Msa1303580:intron 55.0%
TTGGCTGGTGCGTAACGCAA+TGG + chr8_3:66762206-66762225 Msa1303580:intron 55.0%
TGGTGCGTAACGCAATGGTC+AGG + chr8_3:66762211-66762230 Msa1303580:intron 55.0%
GCCACGCGCTATATGTTGAG+GGG + chr8_3:66762247-66762266 Msa1303580:intron 55.0%
ACCCCTCAACATATAGCGCG+TGG - chr8_3:66762251-66762270 None:intergenic 55.0%
TGGCTAGGAGGATTGGAGAC+AGG - chr8_3:66762318-66762337 None:intergenic 55.0%
CTCCAATCCTCCTAGCCACT+AGG + chr8_3:66762320-66762339 Msa1303580:intron 55.0%
GTCCTAGTGGCTAGGAGGAT+TGG - chr8_3:66762325-66762344 None:intergenic 55.0%
TCAGCCTCTCGCATGCCAAT+TGG + chr8_3:66763006-66763025 Msa1303580:intron 55.0%
CAGCCTCTCGCATGCCAATT+GGG + chr8_3:66763007-66763026 Msa1303580:intron 55.0%
ACTCCCAATTGGCATGCGAG+AGG - chr8_3:66763013-66763032 None:intergenic 55.0%
CTCGCATGCCAATTGGGAGT+AGG + chr8_3:66763013-66763032 Msa1303580:intron 55.0%
CCCGCGTGGATCCACATTTA+AGG - chr8_3:66763052-66763071 None:intergenic 55.0%
CTGTTTGGAGATCCACAGCC+GGG + chr8_3:66763079-66763098 Msa1303580:intron 55.0%
TGTTTGGAGATCCACAGCCG+GGG + chr8_3:66763080-66763099 Msa1303580:intron 55.0%
GGGGATGAGGGAGAAAGTGA+GGG + chr8_3:66763122-66763141 Msa1303580:intron 55.0%
GGGAGAAAGTGAGGGTAGTG+CGG + chr8_3:66763130-66763149 Msa1303580:intron 55.0%
GGAGAAAGTGAGGGTAGTGC+GGG + chr8_3:66763131-66763150 Msa1303580:intron 55.0%
GAGAAAGTGAGGGTAGTGCG+GGG + chr8_3:66763132-66763151 Msa1303580:intron 55.0%
GATTATACCCTCCGCCCTGT+GGG + chr8_3:66763154-66763173 Msa1303580:intron 55.0%
ATTATACCCTCCGCCCTGTG+GGG + chr8_3:66763155-66763174 Msa1303580:intron 55.0%
GGCTTTCCCTTTGCCGAAAC+AGG - chr8_3:66763586-66763605 None:intergenic 55.0%
ACTTGCGGAACGACGTGCAA+AGG + chr8_3:66763675-66763694 Msa1303580:CDS 55.0%
CTTGCGGAACGACGTGCAAA+GGG + chr8_3:66763676-66763695 Msa1303580:CDS 55.0%
TGTACGAGCTACCGGAGCAA+TGG + chr8_3:66765611-66765630 Msa1303580:CDS 55.0%
! GCTGCCAATGGTATTGAGGG+CGG + chr8_3:66766178-66766197 Msa1303580:CDS 55.0%
GTCTCCGCCCTCAATACCAT+TGG - chr8_3:66766185-66766204 None:intergenic 55.0%
CTGGTCCTCCTTGTTCCTGG+AGG + chr8_3:66762082-66762101 Msa1303580:intron 60.0%
CCCAACGCTTAACTGCCTCC+AGG - chr8_3:66762100-66762119 None:intergenic 60.0%
CAAACAGAGCAGTTCCCGCG+TGG - chr8_3:66763066-66763085 None:intergenic 60.0%
CACGCGGGAACTGCTCTGTT+TGG + chr8_3:66763064-66763083 Msa1303580:intron 60.0%
! GGAATTTTCCCCCGTGGGGA+CGG + chr8_3:66763101-66763120 Msa1303580:intron 60.0%
! GAATTTTCCCCCGTGGGGAC+GGG + chr8_3:66763102-66763121 Msa1303580:intron 60.0%
! AATTTTCCCCCGTGGGGACG+GGG + chr8_3:66763103-66763122 Msa1303580:intron 60.0%
CGGGGATGAGGGAGAAAGTG+AGG + chr8_3:66763121-66763140 Msa1303580:intron 60.0%
GGATTATACCCTCCGCCCTG+TGG + chr8_3:66763153-66763172 Msa1303580:intron 60.0%
ACACGATGCTGCCGCACTCA+TGG - chr8_3:66765848-66765867 None:intergenic 60.0%
GGGGGAAAATTCCCCGGCTG+TGG - chr8_3:66763094-66763113 None:intergenic 65.0%
! AGCCGGGGAATTTTCCCCCG+TGG + chr8_3:66763095-66763114 Msa1303580:intron 65.0%
! GCCGGGGAATTTTCCCCCGT+GGG + chr8_3:66763096-66763115 Msa1303580:intron 65.0%
CCCCACGGGGGAAAATTCCC+CGG - chr8_3:66763100-66763119 None:intergenic 65.0%
! CCGGGGAATTTTCCCCCGTG+GGG + chr8_3:66763097-66763116 Msa1303580:intron 65.0%
TTCGGGGACGCATCCCCACA+GGG - chr8_3:66763171-66763190 None:intergenic 65.0%
TCCCTCATCCCCGTCCCCAC+GGG - chr8_3:66763114-66763133 None:intergenic 70.0%
CTCCCTCATCCCCGTCCCCA+CGG - chr8_3:66763115-66763134 None:intergenic 70.0%
ACGCATCCCCACAGGGCGGA+GGG - chr8_3:66763164-66763183 None:intergenic 70.0%
GTTCGGGGACGCATCCCCAC+AGG - chr8_3:66763172-66763191 None:intergenic 70.0%
CCTCATCCCCGTCCCCACGG+GGG - chr8_3:66763112-66763131 None:intergenic 75.0%
CCCTCATCCCCGTCCCCACG+GGG - chr8_3:66763113-66763132 None:intergenic 75.0%
CCCCGTGGGGACGGGGATGA+GGG + chr8_3:66763110-66763129 Msa1303580:intron 75.0%
GACGCATCCCCACAGGGCGG+AGG - chr8_3:66763165-66763184 None:intergenic 75.0%
GGGGACGCATCCCCACAGGG+CGG - chr8_3:66763168-66763187 None:intergenic 75.0%
! CCCCCGTGGGGACGGGGATG+AGG + chr8_3:66763109-66763128 Msa1303580:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 66762008 66766261 66762008 ID=Msa1303580;Name=Msa1303580
chr8_3 mRNA 66762008 66766261 66762008 ID=Msa1303580-mRNA-1;Parent=Msa1303580;Name=Msa1303580-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.5|0.4|0.5|6|0|228
chr8_3 exon 66762008 66762013 66762008 ID=Msa1303580-mRNA-1:exon:20293;Parent=Msa1303580-mRNA-1
chr8_3 exon 66763583 66763737 66763583 ID=Msa1303580-mRNA-1:exon:20294;Parent=Msa1303580-mRNA-1
chr8_3 exon 66763990 66763997 66763990 ID=Msa1303580-mRNA-1:exon:20295;Parent=Msa1303580-mRNA-1
chr8_3 exon 66765581 66765722 66765581 ID=Msa1303580-mRNA-1:exon:20296;Parent=Msa1303580-mRNA-1
chr8_3 exon 66765747 66765882 66765747 ID=Msa1303580-mRNA-1:exon:20297;Parent=Msa1303580-mRNA-1
chr8_3 exon 66766022 66766261 66766022 ID=Msa1303580-mRNA-1:exon:20298;Parent=Msa1303580-mRNA-1
chr8_3 CDS 66762008 66762013 66762008 ID=Msa1303580-mRNA-1:cds;Parent=Msa1303580-mRNA-1
chr8_3 CDS 66763583 66763737 66763583 ID=Msa1303580-mRNA-1:cds;Parent=Msa1303580-mRNA-1
chr8_3 CDS 66763990 66763997 66763990 ID=Msa1303580-mRNA-1:cds;Parent=Msa1303580-mRNA-1
chr8_3 CDS 66765581 66765722 66765581 ID=Msa1303580-mRNA-1:cds;Parent=Msa1303580-mRNA-1
chr8_3 CDS 66765747 66765882 66765747 ID=Msa1303580-mRNA-1:cds;Parent=Msa1303580-mRNA-1
chr8_3 CDS 66766022 66766261 66766022 ID=Msa1303580-mRNA-1:cds;Parent=Msa1303580-mRNA-1
Gene Sequence

>Msa1303580

ATGGAACCTGTTTCGGCAAAGGGAAAGCCTTCAAAGCTGCTTAAGAGGAAGCATCAAATTGGTTCATTGTACTTTGATATGAAACAAAATGAAATGAAACTTGCGGAACGACGTGCAAAGGGCATGCTTACCAAGGCTGAAACTCAAGCGAAATATGGATGCTTTAGAGAACTACAACAATTATTCGTTGCTAAATATTTGTACGAGCTACCGGAGCAATGGCACTTGCTAGATGGTGATGGGAATACTCATAACGTCATGTCCAACAAATCAGTTAGTCAACCGTTGTTGACAGATGGTTGGAGTGCATTAAGTAAGATTATTGCTTTCCAGTACCTTGGTGGAAGTAGATTTCAAATCTTTGTTTTTGCTCATAACATTGCTCCAGCTGATTATCCACCCTATCATTCCATGAGTGCGGCAGCATCGTGTTATTGTACCTTTGAAGAACTACCTGATACTTTCGGCAAATTCCTTAGAGTGAAACATCACGATTACGTCATGTTGTGCAGACCTTATGACAATATCATTTCCGTGAGACTCAAATATACAGACGACCCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCATGGACAAAAAATATGTTATCGTATCCTAG

Protein sequence

>Msa1303580

MEPVSAKGKPSKLLKRKHQIGSLYFDMKQNEMKLAERRAKGMLTKAETQAKYGCFRELQQLFVAKYLYELPEQWHLLDGDGNTHNVMSNKSVSQPLLTDGWSALSKIIAFQYLGGSRFQIFVFAHNIAPADYPPYHSMSAAASCYCTFEELPDTFGKFLRVKHHDYVMLCRPYDNIISVRLKYTDDPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVMDKKYVIVS*