AlfalfaGEDB | Msa0972860

M. sativa cultivar zhongmu-4 / Msa0972860

KEGG: -
GO: GO:0000372 GO:0000373 GO:0000375 GO:0000376 GO:0000377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF01985.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972860	XP_003618343.2	91.753	679	26	3	1	652	1	676	0.0	1157

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972860	sp\|Q8L7C2\|CFM2_ARATH	55.490	683	249	7	18	651	21	697	0.0	731

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972860	G7KJD3	91.753	679	26	3	1	652	1	676	0.0	1157

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0972860	-0.837348	5.480091e-57	-8.615850e-47
Msa0198440	Msa0972860	0.803262	3.791597e-49	-8.615850e-47
Msa0223100	Msa0972860	0.805918	1.058296e-49	-8.615850e-47
Msa0223290	Msa0972860	0.823295	1.495819e-53	-8.615850e-47
Msa0223380	Msa0972860	0.819976	8.750389e-53	-8.615850e-47
Msa0265210	Msa0972860	0.821606	3.692644e-53	-8.615850e-47
Msa0302650	Msa0972860	0.807034	6.156633e-50	-8.615850e-47
Msa0318070	Msa0972860	0.801866	7.354918e-49	-8.615850e-47
Msa0340550	Msa0972860	0.800401	1.466764e-48	-8.615850e-47
Msa0377530	Msa0972860	0.816907	4.341026e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972860	MtrunA17_Chr6g0451621	91.753	679	26	3	1	652	1	676	0.0	1157
Msa0972860	MtrunA17_Chr1g0187011	37.568	740	341	17	4	653	42	750	2.17e-141	434
Msa0972860	MtrunA17_Chr4g0071101	40.101	596	285	7	110	653	135	710	6.33e-128	396
Msa0972860	MtrunA17_Chr6g0484411	38.742	604	292	10	135	682	194	775	4.14e-124	388
Msa0972860	MtrunA17_Chr8g0391141	34.649	684	317	15	13	652	5	602	1.85e-111	350
Msa0972860	MtrunA17_Chr2g0330811	36.634	606	297	12	118	650	123	714	3.14e-102	329
Msa0972860	MtrunA17_Chr8g0366041	37.991	229	127	3	165	392	1	215	1.32e-44	159
Msa0972860	MtrunA17_Chr4g0067911	40.491	163	91	3	485	644	149	308	1.12e-24	105
Msa0972860	MtrunA17_Chr8g0391361	40.136	147	82	3	498	641	8	151	1.27e-23	98.2
Msa0972860	MtrunA17_Chr1g0171521	38.255	149	84	4	500	643	123	268	2.13e-22	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972860	AT3G01370.1	55.490	683	249	7	18	651	21	697	0.0	731
Msa0972860	AT3G18390.1	42.274	563	258	7	140	653	229	773	6.94e-139	428
Msa0972860	AT4G14510.1	41.107	596	251	10	148	661	216	793	1.52e-132	413
Msa0972860	AT3G23070.1	39.367	663	324	10	46	652	117	757	4.82e-126	395
Msa0972860	AT4G29750.2	40.000	565	255	9	143	653	233	767	2.81e-122	384
Msa0972860	AT4G29750.1	40.000	565	255	9	143	653	233	767	5.60e-122	384
Msa0972860	AT5G16180.1	33.392	566	256	14	139	650	192	690	1.55e-69	241
Msa0972860	AT5G16180.2	30.861	337	136	8	139	445	192	461	5.08e-33	134
Msa0972860	AT4G13070.1	43.226	155	73	5	498	644	144	291	1.30e-24	106
Msa0972860	AT2G28480.1	39.103	156	87	3	492	645	124	273	1.55e-21	97.4

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Find 186 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCGTCCATCAAAAG+AGG	0.522473	6_4:+5175950	None:intergenic
AAACTCAACTCCGCTAACGT+CGG	0.679018	6_4:+5181294	None:intergenic
AAACTGGAGGACTTGTTGTT+TGG	0.357673	6_4:-5179515	Msa0972860:CDS
AAAGTCACCTAGCAACAAGA+AGG	0.528235	6_4:+5177109	None:intergenic
AAATGAAAAGGGAAGAAGAA+TGG	0.521022	6_4:+5181684	None:intergenic
AACAATCCCTTCCGTCACAC+CGG	0.572149	6_4:+5181200	None:intergenic
AACATTTCATGGATAATGGA+GGG	0.595579	6_4:+5181750	None:intergenic
AAGAAGAAGAGGAAGAGGAT+TGG	0.487390	6_4:+5181535	None:intergenic
AAGAAGAGAGATACATGTTG+CGG	0.658097	6_4:-5177154	Msa0972860:CDS
AAGATTAAGGTTGGAAAAGC+CGG	0.471265	6_4:-5181219	Msa0972860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAACATTTCATGGATAA+TGG	+	chr6_4:5175570-5175589	None:intergenic	30.0%
AAATGAAAAGGGAAGAAGAA+TGG	+	chr6_4:5175632-5175651	None:intergenic	30.0%
TGCGAATAGTGAATTTAGAA+GGG	+	chr6_4:5175664-5175683	None:intergenic	30.0%
TTTGTAGGATTAACATGAAG+AGG	-	chr6_4:5176194-5176213	Msa0972860:intron	30.0%
GCTATAAGTTATAAGCTACT+TGG	-	chr6_4:5176661-5176680	Msa0972860:CDS	30.0%
ATAAGTGTGTGAGAAAATGA+CGG	-	chr6_4:5176726-5176745	Msa0972860:CDS	30.0%
GTTCGCTTCATATTTACTTA+GGG	+	chr6_4:5176824-5176843	None:intergenic	30.0%
TGTTCGCTTCATATTTACTT+AGG	+	chr6_4:5176825-5176844	None:intergenic	30.0%
GGTATCATATATATCTGTGT+TGG	-	chr6_4:5177033-5177052	Msa0972860:intron	30.0%
TATATATCTGTGTTGGAAGT+AGG	-	chr6_4:5177040-5177059	Msa0972860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	5175549	5181786	5175549	ID=Msa0972860;Name=Msa0972860
chr6_4	mRNA	5175549	5181786	5175549	ID=Msa0972860-mRNA-1;Parent=Msa0972860;Name=Msa0972860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=32\|0.57\|0.62\|1\|1\|1\|8\|0\|684
chr6_4	exon	5175549	5175573	5175549	ID=Msa0972860-mRNA-1:exon:2220;Parent=Msa0972860-mRNA-1
chr6_4	exon	5175926	5175977	5175926	ID=Msa0972860-mRNA-1:exon:2219;Parent=Msa0972860-mRNA-1
chr6_4	exon	5176656	5176970	5176656	ID=Msa0972860-mRNA-1:exon:2218;Parent=Msa0972860-mRNA-1
chr6_4	exon	5177117	5177273	5177117	ID=Msa0972860-mRNA-1:exon:2217;Parent=Msa0972860-mRNA-1
chr6_4	exon	5177356	5177631	5177356	ID=Msa0972860-mRNA-1:exon:2216;Parent=Msa0972860-mRNA-1
chr6_4	exon	5178577	5178629	5178577	ID=Msa0972860-mRNA-1:exon:2215;Parent=Msa0972860-mRNA-1
chr6_4	exon	5179019	5179541	5179019	ID=Msa0972860-mRNA-1:exon:2214;Parent=Msa0972860-mRNA-1
chr6_4	exon	5181101	5181786	5181101	ID=Msa0972860-mRNA-1:exon:2213;Parent=Msa0972860-mRNA-1
chr6_4	five_prime_UTR	5181755	5181786	5181755	ID=Msa0972860-mRNA-1:five_prime_utr;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5181101	5181754	5181101	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5179019	5179541	5179019	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5178577	5178629	5178577	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5177356	5177631	5177356	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5177117	5177273	5177117	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5176656	5176970	5176656	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5175926	5175977	5175926	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1
chr6_4	CDS	5175549	5175573	5175549	ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1

Gene Sequence

>Msa0972860

ATGTTGCTTCCAACTACCAACTTCAACACCTTCTTCACTCCCTCTTCTCCATTCTTCTTCCCTTTTCATTTCCCCAAAACCCCTTCTAAATTCACTATTCGCACCTCCTCTTCTAATTCCCACACCCTCCCTGATTCCGCCATTCAACGCATCGCCGATAAACTCCATTCCCTAGGCATCACCACCACCACCACCGACCAATCCTCTTCCTCTTCTTCTTCCTCCACAACCTCCACCACCTCCGCCGGTGAAATCTTCCTTCCATTACCACACACACTCCCAAAACACCGCGTCGGTCACACACTCGACCTCAGCTGGAGCACACCGGAGAATCCAGTTCCTCTAGTTGGCGCAGGACTCGAAAAATTGAGCGAGAATGAAGTTGAGAGAGCGCGATTGGCGAAGGAGAAGGAGAGGAAGGAGAAGAGGAAGAGAGTACCGACGTTAGCGGAGTTGAGTTTGACAGATGGGGAGATATTGAGGTTGAGGGAATTAGGGTTTGAGATGAAGCAGAAGATTAAGGTTGGAAAAGCCGGTGTGACGGAAGGGATTGTTAATGGAATTCATGAACGGTGGCGAAGATCGGAAGTTGTTAGGGTTGTTTGTGAGGATCTTTGTAGGATTAACATGAAGAGGACTCATGATATTTTGGAGAGAAAAACTGGAGGACTTGTTGTTTGGAGATCTGGAAGTAAAATAATATTGTACAGAGGGATTGATTATAAGTATCCTTACTTCCTATCAGATGAAGTTTTGAGAGAAGAAAAAAGTGCTTTGCAACATATGGACAGTGATGATGAAAATATTGATGAAAGAGAGACCCATTCATCTGAAATGAGTTCAGCCACACATGCTGGACAAAGTTCAAACATCAAAACCGTAAAACCAGCTTTGGTACAAGGAGTCGGTACTCCCAATAGAGTGAGATTTCAACTGCCAGGTGAAGCAGAGCTTTTAGAAGAAGTAGACAGCTTGTTAGAGGGTCTTGGGCCTCGATTTACGTATTGGTGGGGGTATGACCCTGTGCCTGTTGATGCTGATCTTCTACCTGCCGTTATTCCTGGATTTAGGCCGCCTTTTCGCCTACTTCCATATGGTGTGCAGTCTAAGCTAACGGATGATGAAATGACCACATTGAAGAGACTTGGCAGACATTTACCATGCCATTTTGCATTGGTAAAAAGAGGTGTGCAGAATACTAGCAATAAGAAAATGGCTGAAGAGATTAAGTATCTGACTGGAGGAACTCTCCTTTCTCGGAATAAAGAAGTTATTGTCATTTATAGAGGAAAGGACTTCTTACCTGCTGCAGTTTCTTCAGCAATTAAACAGAGATGGAAAGCTGTAAAAAATAAAGTAAATGCTGAAAACAGATCAGCAGTTACAGCTTCTTCAGATTCTGAAAGAAAGCATATGGCATTCATTAAAGATAAAGAAACCATTGAAAAACCATTATTGATGAAGGCTAAAGCAGCTATTCAAAGGACTAGCATCAAATTGGCACAGGCACTAGAGAAGAAAGAGAAAGCTGAAAAGCTTCTAGAAAGTCTGGAAAAAGACGAGAGTCTTCAAGAACAAGAAATAGATAAAGAGGGTATTACTGAAGAAGAGAGATACATGTTGCGGAGAATTGGCTTGAAGATGAAGCCCTTCTTGTTGCTAGGAAGACGAGGGGTTTTTGATGGGACAGTGGAAAATATGCATCTTCATTGGAAATATCGGGAACTTGTGAAGATAATATGTAATCAAGAAAGCGTGGAATATGCCCACGAGACAGCTCGGACCTTAGAGTCAGAAAGTGGTGGAATATTAGTAGCAGTAGAGAGAGTGAACAAGGGCTACGCAATCATTGTTTATCGTGGAAAGAATTATAGTAGGCCTGATAGTTTGAGGCCGCGAACACTTCTAAATAAAAAGCAAGCATTGAAGCGTTCAATAGAGGCACAACGCCGTGAGGTAAAATTGTCACCGTTGACTAAGATTCCTCTTTTGATGGACGAAGGTTTAAGTGTAAAGGAGAACACAGGAAGGAAATGTAAAGAAAATGGAGGGTAA

Protein sequence

>Msa0972860

MLLPTTNFNTFFTPSSPFFFPFHFPKTPSKFTIRTSSSNSHTLPDSAIQRIADKLHSLGITTTTTDQSSSSSSSSTTSTTSAGEIFLPLPHTLPKHRVGHTLDLSWSTPENPVPLVGAGLEKLSENEVERARLAKEKERKEKRKRVPTLAELSLTDGEILRLRELGFEMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDEVLREEKSALQHMDSDDENIDERETHSSEMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGEAELLEEVDSLLEGLGPRFTYWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRHLPCHFALVKRGVQNTSNKKMAEEIKYLTGGTLLSRNKEVIVIYRGKDFLPAAVSSAIKQRWKAVKNKVNAENRSAVTASSDSERKHMAFIKDKETIEKPLLMKAKAAIQRTSIKLAQALEKKEKAEKLLESLEKDESLQEQEIDKEGITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHETARTLESESGGILVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIEAQRREVKLSPLTKIPLLMDEGLSVKENTGRKCKENGG*