Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972860 | XP_003618343.2 | 91.753 | 679 | 26 | 3 | 1 | 652 | 1 | 676 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972860 | sp|Q8L7C2|CFM2_ARATH | 55.490 | 683 | 249 | 7 | 18 | 651 | 21 | 697 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972860 | G7KJD3 | 91.753 | 679 | 26 | 3 | 1 | 652 | 1 | 676 | 0.0 | 1157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0972860 | -0.837348 | 5.480091e-57 | -8.615850e-47 |
| Msa0617830 | Msa0972860 | 0.800350 | 1.501990e-48 | -8.615850e-47 |
| Msa0638280 | Msa0972860 | 0.832977 | 6.947081e-56 | -8.615850e-47 |
| Msa0638320 | Msa0972860 | 0.825610 | 4.268508e-54 | -8.615850e-47 |
| Msa0677270 | Msa0972860 | 0.825416 | 4.743527e-54 | -8.615850e-47 |
| Msa0743650 | Msa0972860 | 0.809603 | 1.743812e-50 | -8.615850e-47 |
| Msa0198440 | Msa0972860 | 0.803262 | 3.791597e-49 | -8.615850e-47 |
| Msa0223100 | Msa0972860 | 0.805918 | 1.058296e-49 | -8.615850e-47 |
| Msa0223290 | Msa0972860 | 0.823295 | 1.495819e-53 | -8.615850e-47 |
| Msa0223380 | Msa0972860 | 0.819976 | 8.750389e-53 | -8.615850e-47 |
| Msa0377530 | Msa0972860 | 0.816907 | 4.341026e-52 | -8.615850e-47 |
| Msa0419620 | Msa0972860 | -0.830477 | 2.873530e-55 | -8.615850e-47 |
| Msa0431830 | Msa0972860 | 0.819987 | 8.701224e-53 | -8.615850e-47 |
| Msa0468160 | Msa0972860 | 0.804748 | 1.861269e-49 | -8.615850e-47 |
| Msa0265210 | Msa0972860 | 0.821606 | 3.692644e-53 | -8.615850e-47 |
| Msa0302650 | Msa0972860 | 0.807034 | 6.156633e-50 | -8.615850e-47 |
| Msa0318070 | Msa0972860 | 0.801866 | 7.354918e-49 | -8.615850e-47 |
| Msa0340550 | Msa0972860 | 0.800401 | 1.466764e-48 | -8.615850e-47 |
| Msa0511720 | Msa0972860 | -0.824528 | 7.686905e-54 | -8.615850e-47 |
| Msa0517490 | Msa0972860 | 0.811049 | 8.503353e-51 | -8.615850e-47 |
| Msa0520220 | Msa0972860 | 0.803538 | 3.323675e-49 | -8.615850e-47 |
| Msa0598460 | Msa0972860 | 0.814576 | 1.436327e-51 | -8.615850e-47 |
| Msa0863770 | Msa0972860 | 0.811772 | 5.922538e-51 | -8.615850e-47 |
| Msa0870150 | Msa0972860 | 0.824110 | 9.639485e-54 | -8.615850e-47 |
| Msa0903400 | Msa0972860 | 0.841458 | 4.694398e-58 | -8.615850e-47 |
| Msa0935850 | Msa0972860 | 0.804019 | 2.641007e-49 | -8.615850e-47 |
| Msa0972860 | Msa0993530 | 0.810287 | 1.242359e-50 | -8.615850e-47 |
| Msa0972860 | Msa1037700 | -0.815090 | 1.104903e-51 | -8.615850e-47 |
| Msa0972860 | Msa1130210 | -0.829853 | 4.079423e-55 | -8.615850e-47 |
| Msa0972860 | Msa1206020 | 0.813885 | 2.040490e-51 | -8.615850e-47 |
| Msa0972860 | Msa1217830 | 0.812904 | 3.351776e-51 | -8.615850e-47 |
| Msa0972860 | Msa1282920 | 0.816508 | 5.335106e-52 | -8.615850e-47 |
| Msa0972860 | Msa1328850 | 0.808174 | 3.525035e-50 | -8.615850e-47 |
| Msa0972860 | Msa1355950 | 0.805540 | 1.270559e-49 | -8.615850e-47 |
| Msa0972860 | Msa1362510 | 0.813189 | 2.902680e-51 | -8.615850e-47 |
| Msa0972860 | Msa1369530 | 0.800900 | 1.160222e-48 | -8.615850e-47 |
| Msa0972860 | Msa1427830 | 0.869599 | 2.744239e-66 | -8.615850e-47 |
| Msa0972860 | Msa1452470 | 0.817946 | 2.532751e-52 | -8.615850e-47 |
| Msa0972860 | Msa1454110 | 0.868702 | 5.366075e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972860 | MtrunA17_Chr6g0451621 | 91.753 | 679 | 26 | 3 | 1 | 652 | 1 | 676 | 0.0 | 1157 |
| Msa0972860 | MtrunA17_Chr1g0187011 | 37.568 | 740 | 341 | 17 | 4 | 653 | 42 | 750 | 2.17e-141 | 434 |
| Msa0972860 | MtrunA17_Chr4g0071101 | 40.101 | 596 | 285 | 7 | 110 | 653 | 135 | 710 | 6.33e-128 | 396 |
| Msa0972860 | MtrunA17_Chr6g0484411 | 38.742 | 604 | 292 | 10 | 135 | 682 | 194 | 775 | 4.14e-124 | 388 |
| Msa0972860 | MtrunA17_Chr8g0391141 | 34.649 | 684 | 317 | 15 | 13 | 652 | 5 | 602 | 1.85e-111 | 350 |
| Msa0972860 | MtrunA17_Chr2g0330811 | 36.634 | 606 | 297 | 12 | 118 | 650 | 123 | 714 | 3.14e-102 | 329 |
| Msa0972860 | MtrunA17_Chr8g0366041 | 37.991 | 229 | 127 | 3 | 165 | 392 | 1 | 215 | 1.32e-44 | 159 |
| Msa0972860 | MtrunA17_Chr4g0067911 | 40.491 | 163 | 91 | 3 | 485 | 644 | 149 | 308 | 1.12e-24 | 105 |
| Msa0972860 | MtrunA17_Chr8g0391361 | 40.136 | 147 | 82 | 3 | 498 | 641 | 8 | 151 | 1.27e-23 | 98.2 |
| Msa0972860 | MtrunA17_Chr1g0171521 | 38.255 | 149 | 84 | 4 | 500 | 643 | 123 | 268 | 2.13e-22 | 97.8 |
| Msa0972860 | MtrunA17_Chr4g0033621 | 38.411 | 151 | 83 | 3 | 513 | 656 | 151 | 298 | 2.19e-22 | 100 |
| Msa0972860 | MtrunA17_Chr6g0449261 | 38.065 | 155 | 86 | 3 | 507 | 654 | 124 | 275 | 6.22e-14 | 75.1 |
| Msa0972860 | MtrunA17_Chr7g0246441 | 35.849 | 106 | 67 | 1 | 136 | 241 | 146 | 250 | 5.02e-11 | 65.5 |
| Msa0972860 | MtrunA17_Chr0c01g0489491 | 28.169 | 142 | 80 | 3 | 102 | 241 | 87 | 208 | 6.14e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972860 | AT3G01370.1 | 55.490 | 683 | 249 | 7 | 18 | 651 | 21 | 697 | 0.0 | 731 |
| Msa0972860 | AT3G18390.1 | 42.274 | 563 | 258 | 7 | 140 | 653 | 229 | 773 | 6.94e-139 | 428 |
| Msa0972860 | AT4G14510.1 | 41.107 | 596 | 251 | 10 | 148 | 661 | 216 | 793 | 1.52e-132 | 413 |
| Msa0972860 | AT3G23070.1 | 39.367 | 663 | 324 | 10 | 46 | 652 | 117 | 757 | 4.82e-126 | 395 |
| Msa0972860 | AT4G29750.2 | 40.000 | 565 | 255 | 9 | 143 | 653 | 233 | 767 | 2.81e-122 | 384 |
| Msa0972860 | AT4G29750.1 | 40.000 | 565 | 255 | 9 | 143 | 653 | 233 | 767 | 5.60e-122 | 384 |
| Msa0972860 | AT5G16180.1 | 33.392 | 566 | 256 | 14 | 139 | 650 | 192 | 690 | 1.55e-69 | 241 |
| Msa0972860 | AT5G16180.2 | 30.861 | 337 | 136 | 8 | 139 | 445 | 192 | 461 | 5.08e-33 | 134 |
| Msa0972860 | AT4G13070.1 | 43.226 | 155 | 73 | 5 | 498 | 644 | 144 | 291 | 1.30e-24 | 106 |
| Msa0972860 | AT2G28480.1 | 39.103 | 156 | 87 | 3 | 492 | 645 | 124 | 273 | 1.55e-21 | 97.4 |
| Msa0972860 | AT3G25440.1 | 36.364 | 143 | 84 | 3 | 507 | 645 | 149 | 288 | 6.08e-20 | 93.6 |
| Msa0972860 | AT3G25440.2 | 36.364 | 143 | 84 | 3 | 507 | 645 | 85 | 224 | 6.93e-20 | 92.8 |
| Msa0972860 | AT3G25440.4 | 37.815 | 119 | 69 | 2 | 529 | 645 | 18 | 133 | 9.76e-19 | 87.8 |
| Msa0972860 | AT3G25440.3 | 37.815 | 119 | 69 | 2 | 529 | 645 | 18 | 133 | 9.76e-19 | 87.8 |
| Msa0972860 | AT3G25440.5 | 37.815 | 119 | 69 | 2 | 529 | 645 | 18 | 133 | 9.76e-19 | 87.8 |
| Msa0972860 | AT3G27550.2 | 35.878 | 131 | 76 | 2 | 529 | 654 | 144 | 271 | 1.29e-13 | 74.3 |
| Msa0972860 | AT3G27550.3 | 35.878 | 131 | 76 | 2 | 529 | 654 | 88 | 215 | 2.16e-13 | 73.6 |
| Msa0972860 | AT3G27550.1 | 35.878 | 131 | 76 | 2 | 529 | 654 | 88 | 215 | 2.16e-13 | 73.6 |
| Msa0972860 | AT2G20020.1 | 31.111 | 90 | 62 | 0 | 154 | 243 | 243 | 332 | 4.84e-12 | 69.7 |
| Msa0972860 | AT5G54890.1 | 30.159 | 126 | 77 | 3 | 118 | 241 | 116 | 232 | 6.15e-11 | 65.1 |
Find 186 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGAGGTTGAGGGAATT+AGG | 0.168833 | 6_4:-5181258 | Msa0972860:CDS |
| GAAGAGGACTCATGATATTT+TGG | 0.219236 | 6_4:-5181103 | Msa0972860:CDS |
| TGCATCTTCATTGGAAATAT+CGG | 0.239449 | 6_4:-5176912 | Msa0972860:CDS |
| CTTCTACCTGCCGTTATTCC+TGG | 0.240780 | 6_4:-5179132 | Msa0972860:CDS |
| AGTGAATTTAGAAGGGGTTT+TGG | 0.243972 | 6_4:+5181659 | None:intergenic |
| GGCGAAGATCGGAAGTTGTT+AGG | 0.257970 | 6_4:-5181158 | Msa0972860:CDS |
| TGCAGGAAATGTAAAGAAAA+TGG | 0.259990 | 6_4:-5175556 | Msa0972860:intron |
| TGAGATGAAGCAGAAGATTA+AGG | 0.274310 | 6_4:-5181232 | Msa0972860:CDS |
| TATTGAGGTTGAGGGAATTA+GGG | 0.304969 | 6_4:-5181257 | Msa0972860:CDS |
| CTGCCGTTATTCCTGGATTT+AGG | 0.310245 | 6_4:-5179125 | Msa0972860:CDS |
| GCTTTAGCCTTCATCAATAA+TGG | 0.310457 | 6_4:+5177390 | None:intergenic |
| AAGCAACATTTCATGGATAA+TGG | 0.317792 | 6_4:+5181746 | None:intergenic |
| ATGCGTTGAATGGCGGAATC+AGG | 0.330238 | 6_4:+5181603 | None:intergenic |
| GTGACGGAAGGGATTGTTAA+TGG | 0.333318 | 6_4:-5181195 | Msa0972860:CDS |
| GAATACTAGCAATAAGAAAA+TGG | 0.340852 | 6_4:-5178591 | Msa0972860:CDS |
| TTGGGCCTCGATTTACGTAT+TGG | 0.345329 | 6_4:-5179188 | Msa0972860:CDS |
| TCCACCACTTTCTGACTCTA+AGG | 0.346039 | 6_4:+5176828 | None:intergenic |
| GAAAATGGCTGAAGAGATTA+AGG | 0.347940 | 6_4:-5178576 | Msa0972860:intron |
| AAACTGGAGGACTTGTTGTT+TGG | 0.357673 | 6_4:-5179515 | Msa0972860:CDS |
| TCAAAGGACTAGCATCAAAT+TGG | 0.359072 | 6_4:-5177361 | Msa0972860:CDS |
| GTGTGACCGACGCGGTGTTT+TGG | 0.361433 | 6_4:+5181453 | None:intergenic |
| AGATACATGTTGCGGAGAAT+TGG | 0.365846 | 6_4:-5177146 | Msa0972860:CDS |
| GGACTTGTTGTTTGGAGATC+TGG | 0.366719 | 6_4:-5179507 | Msa0972860:CDS |
| CAAACTGACCCAATGCAAAA+TGG | 0.366798 | 6_4:+5179010 | None:intergenic |
| GTGCGAATAGTGAATTTAGA+AGG | 0.368749 | 6_4:+5181651 | None:intergenic |
| TAGTTGGAAGCAACATTTCA+TGG | 0.369674 | 6_4:+5181739 | None:intergenic |
| TTTGGGAGTGTGTGTGGTAA+TGG | 0.369886 | 6_4:+5181471 | None:intergenic |
| GGCGGAGGTGGTGGAGGTTG+TGG | 0.381067 | 6_4:+5181509 | None:intergenic |
| GAAGTTATTGTCATTTATAG+AGG | 0.384386 | 6_4:-5177573 | Msa0972860:CDS |
| TGGTGGTGGTGGTGATGCCT+AGG | 0.389843 | 6_4:+5181562 | None:intergenic |
| TGACAGATGGGGAGATATTG+AGG | 0.390110 | 6_4:-5181272 | Msa0972860:CDS |
| ACAGCTTGTTAGAGGGTCTT+GGG | 0.397641 | 6_4:-5179206 | Msa0972860:CDS |
| AGAGGATTGGTCGGTGGTGG+TGG | 0.398243 | 6_4:+5181548 | None:intergenic |
| GATTTCACCGGCGGAGGTGG+TGG | 0.399871 | 6_4:+5181500 | None:intergenic |
| TGGCGGAATCAGGGAGGGTG+TGG | 0.399987 | 6_4:+5181613 | None:intergenic |
| GGGAAGAAGAATGGAGAAGA+GGG | 0.400255 | 6_4:+5181693 | None:intergenic |
| TGGAGAAGAGGGAGTGAAGA+AGG | 0.404129 | 6_4:+5181704 | None:intergenic |
| GACAGCTTGTTAGAGGGTCT+TGG | 0.404713 | 6_4:-5179207 | Msa0972860:CDS |
| CTGAACTCATTTCAGATGAA+TGG | 0.405516 | 6_4:+5179352 | None:intergenic |
| GCCTCGATTTACGTATTGGT+GGG | 0.405901 | 6_4:-5179184 | Msa0972860:CDS |
| CTGGAGGAACTCTCCTTTCT+CGG | 0.406258 | 6_4:-5177602 | Msa0972860:CDS |
| TAACTTCTTTATTCCGAGAA+AGG | 0.417396 | 6_4:+5177589 | None:intergenic |
| TGGAAAATATGCATCTTCAT+TGG | 0.418682 | 6_4:-5176921 | Msa0972860:CDS |
| GTTCGCGGCCTCAAACTATC+AGG | 0.418831 | 6_4:+5176733 | None:intergenic |
| AGTTGAAATCTCACTCTATT+GGG | 0.420829 | 6_4:+5179261 | None:intergenic |
| ATGGGGAGATATTGAGGTTG+AGG | 0.421278 | 6_4:-5181266 | Msa0972860:CDS |
| TGAAAAGCTTCTAGAAAGTC+TGG | 0.422252 | 6_4:-5177228 | Msa0972860:CDS |
| CAGTTGAAATCTCACTCTAT+TGG | 0.422620 | 6_4:+5179260 | None:intergenic |
| TTGTTTGTGAGGATCTTTGT+AGG | 0.425480 | 6_4:-5181134 | Msa0972860:CDS |
| GGAGGAAGAAGAAGAGGAAG+AGG | 0.431041 | 6_4:+5181530 | None:intergenic |
| AAGGTGTTGAAGTTGGTAGT+TGG | 0.432073 | 6_4:+5181723 | None:intergenic |
| AGAAGTAGACAGCTTGTTAG+AGG | 0.433202 | 6_4:-5179214 | Msa0972860:CDS |
| GGATTGGTCGGTGGTGGTGG+TGG | 0.434453 | 6_4:+5181551 | None:intergenic |
| ACTTCATCTGATAGGAAGTA+AGG | 0.436466 | 6_4:+5179444 | None:intergenic |
| CCTGCGCCAACTAGAGGAAC+TGG | 0.442152 | 6_4:+5181399 | None:intergenic |
| TGAAGTTGAGAGAGCGCGAT+TGG | 0.453856 | 6_4:-5181355 | Msa0972860:CDS |
| ATGAAGCAGAAGATTAAGGT+TGG | 0.456164 | 6_4:-5181228 | Msa0972860:CDS |
| AGCTTAGACTGCACACCATA+TGG | 0.457604 | 6_4:+5179084 | None:intergenic |
| TTCACCGGCGGAGGTGGTGG+AGG | 0.459447 | 6_4:+5181503 | None:intergenic |
| AGTGAAGAAGGTGTTGAAGT+TGG | 0.459854 | 6_4:+5181716 | None:intergenic |
| CAAAACCGTAAAACCAGCTT+TGG | 0.460882 | 6_4:-5179301 | Msa0972860:CDS |
| CTCTCAAAACTTCATCTGAT+AGG | 0.461751 | 6_4:+5179436 | None:intergenic |
| TGAACTCATTTCAGATGAAT+GGG | 0.464393 | 6_4:+5179353 | None:intergenic |
| GGAAGAGGATTGGTCGGTGG+TGG | 0.464476 | 6_4:+5181545 | None:intergenic |
| GCGAAGATCGGAAGTTGTTA+GGG | 0.464610 | 6_4:-5181157 | Msa0972860:CDS |
| CGGAGTTGAGTTTGACAGAT+GGG | 0.470097 | 6_4:-5181284 | Msa0972860:CDS |
| AAGATTAAGGTTGGAAAAGC+CGG | 0.471265 | 6_4:-5181219 | Msa0972860:CDS |
| GGCCTCGATTTACGTATTGG+TGG | 0.472172 | 6_4:-5179185 | Msa0972860:CDS |
| GCCTAGGGAATGGAGTTTAT+CGG | 0.475475 | 6_4:+5181578 | None:intergenic |
| AGAACAAGAAATAGATAAAG+AGG | 0.476169 | 6_4:-5177186 | Msa0972860:CDS |
| GGCGAAGGAGAAGGAGAGGA+AGG | 0.479267 | 6_4:-5181334 | Msa0972860:CDS |
| GTCACACACTCGACCTCAGC+TGG | 0.480545 | 6_4:-5181437 | Msa0972860:CDS |
| GAAGATTTCACCGGCGGAGG+TGG | 0.482280 | 6_4:+5181497 | None:intergenic |
| TCATGAACGGTGGCGAAGAT+CGG | 0.483198 | 6_4:-5181169 | Msa0972860:CDS |
| CTTCAGCAATTAAACAGAGA+TGG | 0.483872 | 6_4:-5177524 | Msa0972860:CDS |
| AGAAGGAGAGGAAGGAGAAG+AGG | 0.485180 | 6_4:-5181326 | Msa0972860:CDS |
| GGTAGAAGATCAGCATCAAC+AGG | 0.486170 | 6_4:+5179147 | None:intergenic |
| AGAAGAGGAAGAGGATTGGT+CGG | 0.486235 | 6_4:+5181539 | None:intergenic |
| AAGAAGAAGAGGAAGAGGAT+TGG | 0.487390 | 6_4:+5181535 | None:intergenic |
| TGGGGAGATATTGAGGTTGA+GGG | 0.487480 | 6_4:-5181265 | Msa0972860:CDS |
| GGTTGTGGAGGAAGAAGAAG+AGG | 0.490383 | 6_4:+5181524 | None:intergenic |
| ATGAGTTCAGCCACACATGC+TGG | 0.496048 | 6_4:-5179339 | Msa0972860:CDS |
| TGAGAGAGCGCGATTGGCGA+AGG | 0.496079 | 6_4:-5181349 | Msa0972860:CDS |
| AGGGAAGAAGAATGGAGAAG+AGG | 0.496737 | 6_4:+5181692 | None:intergenic |
| GCATCTTCATTGGAAATATC+GGG | 0.497692 | 6_4:-5176911 | Msa0972860:CDS |
| AGATTCTGAAAGAAAGCATA+TGG | 0.497996 | 6_4:-5177445 | Msa0972860:CDS |
| TCTAAAAGCTCTGCTTCACC+TGG | 0.499634 | 6_4:+5179237 | None:intergenic |
| TTTATCGGCGATGCGTTGAA+TGG | 0.515612 | 6_4:+5181593 | None:intergenic |
| AGCATTGAAGCGTTCAATAG+AGG | 0.519294 | 6_4:-5176692 | Msa0972860:CDS |
| TGCGAATAGTGAATTTAGAA+GGG | 0.519533 | 6_4:+5181652 | None:intergenic |
| AAATGAAAAGGGAAGAAGAA+TGG | 0.521022 | 6_4:+5181684 | None:intergenic |
| GTAAAATAATATTGTACAGA+GGG | 0.522135 | 6_4:-5179482 | Msa0972860:CDS |
| AAACCTTCGTCCATCAAAAG+AGG | 0.522473 | 6_4:+5175950 | None:intergenic |
| CGGCCTAAATCCAGGAATAA+CGG | 0.522622 | 6_4:+5179122 | None:intergenic |
| GGACGAAGGTTTAAGTGTAA+AGG | 0.523281 | 6_4:-5175939 | Msa0972860:CDS |
| GAAGAGAGTACCGACGTTAG+CGG | 0.523379 | 6_4:-5181304 | Msa0972860:CDS |
| AGATCAGCATCAACAGGCAC+AGG | 0.523762 | 6_4:+5179153 | None:intergenic |
| GTAAAACCAGCTTTGGTACA+AGG | 0.526612 | 6_4:-5179294 | Msa0972860:CDS |
| CCGACTCCTTGTACCAAAGC+TGG | 0.527389 | 6_4:+5179288 | None:intergenic |
| AAAGTCACCTAGCAACAAGA+AGG | 0.528235 | 6_4:+5177109 | None:intergenic |
| AGTAAAATAATATTGTACAG+AGG | 0.529007 | 6_4:-5179483 | Msa0972860:CDS |
| CCATATGGAAGTAGGCGAAA+AGG | 0.529103 | 6_4:+5179099 | None:intergenic |
| TTTGTAGGATTAACATGAAG+AGG | 0.531830 | 6_4:-5181119 | Msa0972860:CDS |
| GAGAATCCAGTTCCTCTAGT+TGG | 0.535200 | 6_4:-5181405 | Msa0972860:CDS |
| GGTGGTGGTGGTGATGCCTA+GGG | 0.535950 | 6_4:+5181563 | None:intergenic |
| AGCGCGATTGGCGAAGGAGA+AGG | 0.537283 | 6_4:-5181343 | Msa0972860:CDS |
| GGAAAAGCCGGTGTGACGGA+AGG | 0.537939 | 6_4:-5181207 | Msa0972860:CDS |
| CTCGATTTACGTATTGGTGG+GGG | 0.538562 | 6_4:-5179182 | Msa0972860:CDS |
| ACTAGAGGAACTGGATTCTC+CGG | 0.538677 | 6_4:+5181408 | None:intergenic |
| TGGTGGTGATGCCTAGGGAA+TGG | 0.539028 | 6_4:+5181568 | None:intergenic |
| TGCGTTGAATGGCGGAATCA+GGG | 0.541195 | 6_4:+5181604 | None:intergenic |
| AGTTGTTAGGGTTGTTTGTG+AGG | 0.543015 | 6_4:-5181145 | Msa0972860:CDS |
| TATTGTCATTTATAGAGGAA+AGG | 0.543212 | 6_4:-5177568 | Msa0972860:CDS |
| AGCAGTAGAGAGAGTGAACA+AGG | 0.546860 | 6_4:-5176797 | Msa0972860:CDS |
| ACTTCTCTGCAGTATCTGAC+TGG | 0.549377 | 6_4:-5177621 | Msa0972860:intron |
| CCTCGATTTACGTATTGGTG+GGG | 0.550909 | 6_4:-5179183 | Msa0972860:CDS |
| GGAGGTGGTGGAGGTTGTGG+AGG | 0.552258 | 6_4:+5181512 | None:intergenic |
| ATTGCTGAAGAAACTGCAGC+AGG | 0.553692 | 6_4:+5177537 | None:intergenic |
| AGAGTGAGATTTCAACTGCC+AGG | 0.554712 | 6_4:-5179255 | Msa0972860:CDS |
| CCAGTTCCTCTAGTTGGCGC+AGG | 0.554852 | 6_4:-5181399 | Msa0972860:CDS |
| AAGGAAGATTTCACCGGCGG+AGG | 0.555607 | 6_4:+5181494 | None:intergenic |
| TCGAGTCCTGCGCCAACTAG+AGG | 0.558107 | 6_4:+5181393 | None:intergenic |
| ACAACCTCCACCACCTCCGC+CGG | 0.559900 | 6_4:-5181507 | Msa0972860:CDS |
| ATCGGCGATGCGTTGAATGG+CGG | 0.560791 | 6_4:+5181596 | None:intergenic |
| GACTAGCATCAAATTGGCAC+AGG | 0.563794 | 6_4:-5177355 | Msa0972860:intron |
| ATGAAGCCCTTCTTGTTGCT+AGG | 0.564414 | 6_4:-5177116 | Msa0972860:intron |
| CTAAGGTCCGAGCTGTCTCG+TGG | 0.565873 | 6_4:+5176845 | None:intergenic |
| TGAACTTTGTCCAGCATGTG+TGG | 0.567125 | 6_4:+5179329 | None:intergenic |
| CTTAATTATCAGGAAGACGA+GGG | 0.570502 | 6_4:-5176960 | Msa0972860:intron |
| AACAATCCCTTCCGTCACAC+CGG | 0.572149 | 6_4:+5181200 | None:intergenic |
| ATAGTAGGCCTGATAGTTTG+AGG | 0.572925 | 6_4:-5176741 | Msa0972860:CDS |
| AGGCTAAAGCAGCTATTCAA+AGG | 0.574781 | 6_4:-5177377 | Msa0972860:CDS |
| GAGGGTGTGGGAATTAGAAG+AGG | 0.578823 | 6_4:+5181626 | None:intergenic |
| ATGACCACATTGAAGAGACT+TGG | 0.585752 | 6_4:-5179048 | Msa0972860:CDS |
| AGGAAATGTAAAGAAAATGG+AGG | 0.586490 | 6_4:-5175553 | Msa0972860:CDS |
| TCTCCGGTGTGCTCCAGCTG+AGG | 0.587807 | 6_4:+5181424 | None:intergenic |
| GGTTGGAAAAGCCGGTGTGA+CGG | 0.588444 | 6_4:-5181211 | Msa0972860:CDS |
| CTAAATCCAGGAATAACGGC+AGG | 0.590887 | 6_4:+5179126 | None:intergenic |
| CAACATTTCATGGATAATGG+AGG | 0.590890 | 6_4:+5181749 | None:intergenic |
| GGCGGAATCAGGGAGGGTGT+GGG | 0.593012 | 6_4:+5181614 | None:intergenic |
| GAAGTAGACAGCTTGTTAGA+GGG | 0.594691 | 6_4:-5179213 | Msa0972860:CDS |
| AACATTTCATGGATAATGGA+GGG | 0.595579 | 6_4:+5181750 | None:intergenic |
| GAAAAGCCGGTGTGACGGAA+GGG | 0.596106 | 6_4:-5181206 | Msa0972860:CDS |
| TACGCAATCATTGTTTATCG+TGG | 0.599696 | 6_4:-5176772 | Msa0972860:CDS |
| GGTGTGGGAATTAGAAGAGG+AGG | 0.604178 | 6_4:+5181629 | None:intergenic |
| ACTGCACACCATATGGAAGT+AGG | 0.605649 | 6_4:+5179091 | None:intergenic |
| AAGTCACCTAGCAACAAGAA+GGG | 0.606277 | 6_4:+5177110 | None:intergenic |
| TTGTTAATGGAATTCATGAA+CGG | 0.606981 | 6_4:-5181182 | Msa0972860:CDS |
| AGAGGAAGAGGATTGGTCGG+TGG | 0.608643 | 6_4:+5181542 | None:intergenic |
| GGAAATGTAAAGAAAATGGA+GGG | 0.609054 | 6_4:-5175552 | Msa0972860:CDS |
| AATATGTAATCAAGAAAGCG+TGG | 0.609190 | 6_4:-5176875 | Msa0972860:CDS |
| GATTGGCGAAGGAGAAGGAG+AGG | 0.610415 | 6_4:-5181338 | Msa0972860:CDS |
| CGGACCTTAGAGTCAGAAAG+TGG | 0.610700 | 6_4:-5176832 | Msa0972860:CDS |
| GAACAAGAAATAGATAAAGA+GGG | 0.613399 | 6_4:-5177185 | Msa0972860:CDS |
| TAATGGAAGGAAGATTTCAC+CGG | 0.614501 | 6_4:+5181488 | None:intergenic |
| TGGTGTGCAGTCTAAGCTAA+CGG | 0.614716 | 6_4:-5179079 | Msa0972860:CDS |
| GCGAATAGTGAATTTAGAAG+GGG | 0.614784 | 6_4:+5181653 | None:intergenic |
| GCGGAGTTGAGTTTGACAGA+TGG | 0.615920 | 6_4:-5181285 | Msa0972860:CDS |
| GCCGATAAACTCCATTCCCT+AGG | 0.618108 | 6_4:-5181579 | Msa0972860:CDS |
| GGAGTTGAGTTTGACAGATG+GGG | 0.620692 | 6_4:-5181283 | Msa0972860:CDS |
| AATATGCCCACGAGACAGCT+CGG | 0.621653 | 6_4:-5176852 | Msa0972860:CDS |
| ATCGTGGAAAGAATTATAGT+AGG | 0.621723 | 6_4:-5176756 | Msa0972860:CDS |
| CGACCTCAGCTGGAGCACAC+CGG | 0.626838 | 6_4:-5181427 | Msa0972860:CDS |
| ACCTTAGAGTCAGAAAGTGG+TGG | 0.632040 | 6_4:-5176829 | Msa0972860:CDS |
| TTGAATGGCGGAATCAGGGA+GGG | 0.632430 | 6_4:+5181608 | None:intergenic |
| TGACCCAATGCAAAATGGCA+TGG | 0.633048 | 6_4:+5179015 | None:intergenic |
| TCTTAATTATCAGGAAGACG+AGG | 0.640344 | 6_4:-5176961 | Msa0972860:intron |
| AATAGTCAAATACTAGTCAA+CGG | 0.640546 | 6_4:+5176643 | None:intergenic |
| TTAAGTGTAAAGGAGAACAC+AGG | 0.652570 | 6_4:-5175929 | Msa0972860:CDS |
| GATCAGCATCAACAGGCACA+GGG | 0.653119 | 6_4:+5179154 | None:intergenic |
| AAGAAGAGAGATACATGTTG+CGG | 0.658097 | 6_4:-5177154 | Msa0972860:CDS |
| TTAATGGAATTCATGAACGG+TGG | 0.663120 | 6_4:-5181179 | Msa0972860:CDS |
| GGAGTGTGTGTGGTAATGGA+AGG | 0.664230 | 6_4:+5181475 | None:intergenic |
| CCAGCTTTGGTACAAGGAGT+CGG | 0.664643 | 6_4:-5179288 | Msa0972860:CDS |
| TATGGAAGTAGGCGAAAAGG+CGG | 0.665566 | 6_4:+5179102 | None:intergenic |
| CCCCACCAATACGTAAATCG+AGG | 0.669627 | 6_4:+5179183 | None:intergenic |
| TGGAAGGAAGATTTCACCGG+CGG | 0.678409 | 6_4:+5181491 | None:intergenic |
| AAACTCAACTCCGCTAACGT+CGG | 0.679018 | 6_4:+5181294 | None:intergenic |
| AATAGAGGCACAACGCCGTG+AGG | 0.680846 | 6_4:-5176677 | Msa0972860:CDS |
| TTAATTATCAGGAAGACGAG+GGG | 0.682549 | 6_4:-5176959 | Msa0972860:intron |
| TCTCTGCAGTATCTGACTGG+AGG | 0.686060 | 6_4:-5177618 | Msa0972860:intron |
| ACACTCCCAAAACACCGCGT+CGG | 0.694080 | 6_4:-5181459 | Msa0972860:CDS |
| TCTGCCAAGTCTCTTCAATG+TGG | 0.705419 | 6_4:+5179044 | None:intergenic |
| GCAGTAGAGAGAGTGAACAA+GGG | 0.707352 | 6_4:-5176796 | Msa0972860:CDS |
| GTGTAAAGGAGAACACAGGA+AGG | 0.712017 | 6_4:-5175925 | Msa0972860:intron |
| GTTGAATGGCGGAATCAGGG+AGG | 0.715019 | 6_4:+5181607 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAATCTTAATTGAAT+TGG | + | chr6_4:5179176-5179195 | None:intergenic | 10.0% |
| !! | TTCAATTAAGATTTAAATAA+TGG | - | chr6_4:5179177-5179196 | Msa0972860:CDS | 10.0% |
| !!! | ATTAAATTTAAAACTGATTA+TGG | + | chr6_4:5179472-5179491 | None:intergenic | 10.0% |
| !! | AACAATGTTAAAATTATAAT+AGG | - | chr6_4:5180788-5180807 | Msa0972860:intron | 10.0% |
| !!! | TTCTAAGTTTTTGAATTTTT+TGG | - | chr6_4:5176281-5176300 | Msa0972860:intron | 15.0% |
| !!! | TTTATGAAATTTTGTACTTA+TGG | - | chr6_4:5178791-5178810 | Msa0972860:intron | 15.0% |
| !! | TACTTATGGTTTAAATATAA+TGG | - | chr6_4:5178805-5178824 | Msa0972860:intron | 15.0% |
| !!! | ATGTCGTTTATAAAATTATT+TGG | - | chr6_4:5178924-5178943 | Msa0972860:intron | 15.0% |
| !! | TATTATAAAACAGATTTGTA+GGG | + | chr6_4:5179412-5179431 | None:intergenic | 15.0% |
| !! | AACATTTACAAAATATATAG+AGG | + | chr6_4:5179568-5179587 | None:intergenic | 15.0% |
| !! | ATAGTTGATTATTCTAAATA+TGG | - | chr6_4:5180255-5180274 | Msa0972860:intron | 15.0% |
| !!! | ATATTTTAAATAGCTTTTGA+AGG | + | chr6_4:5180297-5180316 | None:intergenic | 15.0% |
| !! | ACTAATATAAAATTTATTCC+TGG | - | chr6_4:5180320-5180339 | Msa0972860:intron | 15.0% |
| !! | TATCTCTTATAATATAAGAA+AGG | - | chr6_4:5180956-5180975 | Msa0972860:intron | 15.0% |
| !!! | TAAGTTTTGAAATTCAAATT+TGG | + | chr6_4:5181145-5181164 | None:intergenic | 15.0% |
| !! | ATTGAAATAAAAATAAGAAC+AGG | + | chr6_4:5181294-5181313 | None:intergenic | 15.0% |
| !! | ATTTCAAAACAAAAAATGAA+GGG | + | chr6_4:5181616-5181635 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTTTGATTTTAGT+TGG | - | chr6_4:5176296-5176315 | Msa0972860:intron | 20.0% |
| !!! | AATCAATTTTGTGTTGATTA+AGG | - | chr6_4:5176380-5176399 | Msa0972860:intron | 20.0% |
| !!! | ATCAATTTTGTGTTGATTAA+GGG | - | chr6_4:5176381-5176400 | Msa0972860:intron | 20.0% |
| !! | TTTATTCAATGAAGATTATC+AGG | - | chr6_4:5176615-5176634 | Msa0972860:intron | 20.0% |
| !! | ATAACAAAAAAAGACATGTT+TGG | + | chr6_4:5176755-5176774 | None:intergenic | 20.0% |
| !!! | AGTGAAATAAAGTGATATTT+TGG | + | chr6_4:5177611-5177630 | None:intergenic | 20.0% |
| !!! | TCTGTTTTCAAAGTTTTATA+TGG | - | chr6_4:5177637-5177656 | Msa0972860:intron | 20.0% |
| !!! | AACAGAAATTATTGCTTTTT+TGG | - | chr6_4:5177663-5177682 | Msa0972860:intron | 20.0% |
| !! | AAATCATATTGGACAAATTA+AGG | + | chr6_4:5177719-5177738 | None:intergenic | 20.0% |
| !!! | TTAATTTGTCCAATATGATT+TGG | - | chr6_4:5177718-5177737 | Msa0972860:intron | 20.0% |
| !!! | TAATTTGTCCAATATGATTT+GGG | - | chr6_4:5177719-5177738 | Msa0972860:intron | 20.0% |
| !! | ATAATCAGATTATTGTACAT+GGG | + | chr6_4:5177748-5177767 | None:intergenic | 20.0% |
| !! | TATAATCAGATTATTGTACA+TGG | + | chr6_4:5177749-5177768 | None:intergenic | 20.0% |
| !! | AGTAAAATAATATTGTACAG+AGG | - | chr6_4:5177830-5177849 | Msa0972860:intron | 20.0% |
| !! | GTAAAATAATATTGTACAGA+GGG | - | chr6_4:5177831-5177850 | Msa0972860:intron | 20.0% |
| !! | ATTTCTTAACTTACCAAATA+TGG | - | chr6_4:5178332-5178351 | Msa0972860:intron | 20.0% |
| !! | TTTCTTAACTTACCAAATAT+GGG | - | chr6_4:5178333-5178352 | Msa0972860:intron | 20.0% |
| !!! | TTGTTTCGGTAAATTATTTT+AGG | + | chr6_4:5178468-5178487 | None:intergenic | 20.0% |
| !! | ATATATGCAATAAGTTGTTT+CGG | + | chr6_4:5178482-5178501 | None:intergenic | 20.0% |
| !! | ATAAACTATTTCAATAACTG+AGG | + | chr6_4:5178529-5178548 | None:intergenic | 20.0% |
| !! | CAGTTATTGAAATAGTTTAT+AGG | - | chr6_4:5178529-5178548 | Msa0972860:intron | 20.0% |
| !!! | ATATTTTGTATCTTAGCATT+TGG | - | chr6_4:5179057-5179076 | Msa0972860:CDS | 20.0% |
| !! | GTATTATAAAACAGATTTGT+AGG | + | chr6_4:5179413-5179432 | None:intergenic | 20.0% |
| !!! | GTTTTATAATACCACAATTA+AGG | - | chr6_4:5179421-5179440 | Msa0972860:CDS | 20.0% |
| !! | TTAATTCTCTCTTAATTATC+AGG | - | chr6_4:5180343-5180362 | Msa0972860:intron | 20.0% |
| !! | ATGTTAAAATTATAATAGGC+TGG | - | chr6_4:5180792-5180811 | Msa0972860:intron | 20.0% |
| !!! | ATCTTTCTAAAATTTCTTTG+TGG | - | chr6_4:5180861-5180880 | Msa0972860:intron | 20.0% |
| !!! | TACTTTTTCCTCATTTTTAT+TGG | - | chr6_4:5181565-5181584 | Msa0972860:CDS | 20.0% |
| !!! | TTTTTCTTCCAATAAAAATG+AGG | + | chr6_4:5181576-5181595 | None:intergenic | 20.0% |
| !! | CATTTCAAAACAAAAAATGA+AGG | + | chr6_4:5181617-5181636 | None:intergenic | 20.0% |
| !!! | TTTTTCCTATTGCAATTTAT+TGG | + | chr6_4:5181664-5181683 | None:intergenic | 20.0% |
| !!! | TAATCATTTTCTTATTTTGC+AGG | - | chr6_4:5181740-5181759 | Msa0972860:exon | 20.0% |
| ! | TTGTTAATGGAATTCATGAA+CGG | - | chr6_4:5176131-5176150 | Msa0972860:intron | 25.0% |
| !!! | TTGATTTTAGTTGGTTGAAT+TGG | - | chr6_4:5176305-5176324 | Msa0972860:intron | 25.0% |
| ! | TATATGAGCTTGTAAGATAT+AGG | - | chr6_4:5176772-5176791 | Msa0972860:CDS | 25.0% |
| !! | ATATTTACTTAGGGTTTGTT+TGG | + | chr6_4:5176815-5176834 | None:intergenic | 25.0% |
| !!! | TTTTGAACTTTGAAGTTATC+TGG | - | chr6_4:5177012-5177031 | Msa0972860:intron | 25.0% |
| !! | TTACAAACTTGTTTACATGA+AGG | + | chr6_4:5177144-5177163 | None:intergenic | 25.0% |
| ! | TGATTTACAGTTTGATAAGT+TGG | - | chr6_4:5177424-5177443 | Msa0972860:CDS | 25.0% |
| !! | TTCATATTACTTTGTTTCCT+AGG | - | chr6_4:5177533-5177552 | Msa0972860:CDS | 25.0% |
| !!! | TATTTTGGCAATTAGAAAGA+AGG | + | chr6_4:5177596-5177615 | None:intergenic | 25.0% |
| ! | TTTGGTAAGTTAAGAAATGT+AGG | + | chr6_4:5178330-5178349 | None:intergenic | 25.0% |
| ! | ATTTATCTGAGCTTATCTTA+TGG | - | chr6_4:5178387-5178406 | Msa0972860:intron | 25.0% |
| !!! | TTATTTTAGGAACATGTCAT+GGG | + | chr6_4:5178455-5178474 | None:intergenic | 25.0% |
| !!! | ATTATTTTAGGAACATGTCA+TGG | + | chr6_4:5178456-5178475 | None:intergenic | 25.0% |
| ! | TTACATGACAAACTCTTATT+CGG | - | chr6_4:5178564-5178583 | Msa0972860:intron | 25.0% |
| !!! | TTTGTTTTACAGGTAGAAAT+AGG | - | chr6_4:5178616-5178635 | Msa0972860:intron | 25.0% |
| ! | GAATACTAGCAATAAGAAAA+TGG | - | chr6_4:5178722-5178741 | Msa0972860:intron | 25.0% |
| ! | GGTTTAAATATAATGGTAAG+AGG | - | chr6_4:5178812-5178831 | Msa0972860:intron | 25.0% |
| ! | AGAAAAGAAACTCAATTCAA+AGG | + | chr6_4:5178998-5179017 | None:intergenic | 25.0% |
| ! | TAATGGTGTAATACAACAAT+CGG | + | chr6_4:5179084-5179103 | None:intergenic | 25.0% |
| !! | CAAGTATTGCATTATATAGA+AGG | - | chr6_4:5179320-5179339 | Msa0972860:CDS | 25.0% |
| ! | TTATAATACCACAATTAAGG+TGG | - | chr6_4:5179424-5179443 | Msa0972860:CDS | 25.0% |
| !!! | TTTTGAGTGAACTTAAGTAA+CGG | - | chr6_4:5179598-5179617 | Msa0972860:intron | 25.0% |
| !! | GAAGTTATTGTCATTTATAG+AGG | - | chr6_4:5179740-5179759 | Msa0972860:intron | 25.0% |
| !! | TATTGTCATTTATAGAGGAA+AGG | - | chr6_4:5179745-5179764 | Msa0972860:intron | 25.0% |
| !!! | CATCAATAATGGTTTTTCAA+TGG | + | chr6_4:5179915-5179934 | None:intergenic | 25.0% |
| ! | TGAAAAACCATTATTGATGA+AGG | - | chr6_4:5179916-5179935 | Msa0972860:intron | 25.0% |
| ! | AGAACAAGAAATAGATAAAG+AGG | - | chr6_4:5180127-5180146 | Msa0972860:intron | 25.0% |
| ! | GAACAAGAAATAGATAAAGA+GGG | - | chr6_4:5180128-5180147 | Msa0972860:intron | 25.0% |
| ! | TAATTAAGAGAGAATTAACC+AGG | + | chr6_4:5180341-5180360 | None:intergenic | 25.0% |
| !!! | TTTTTATTTAGAAGTGTTCG+CGG | + | chr6_4:5180598-5180617 | None:intergenic | 25.0% |
| ! | AATAGTCAAATACTAGTCAA+CGG | + | chr6_4:5180673-5180692 | None:intergenic | 25.0% |
| ! | TAGTATTTGACTATTTGTGT+TGG | - | chr6_4:5180678-5180697 | Msa0972860:intron | 25.0% |
| !!! | TTGTGTTTTGAAAAGCTTTT+GGG | + | chr6_4:5181097-5181116 | None:intergenic | 25.0% |
| !!! | TTTGTGTTTTGAAAAGCTTT+TGG | + | chr6_4:5181098-5181117 | None:intergenic | 25.0% |
| ! | TTGAAATTCAAATTTGGAAG+AGG | + | chr6_4:5181139-5181158 | None:intergenic | 25.0% |
| !! | ATTGCTTTAGTACAAACTTT+TGG | - | chr6_4:5181164-5181183 | Msa0972860:CDS | 25.0% |
| !! | GAAAGATCAATGTTTGAAAT+GGG | + | chr6_4:5181264-5181283 | None:intergenic | 25.0% |
| ! | AGAAAGATCAATGTTTGAAA+TGG | + | chr6_4:5181265-5181284 | None:intergenic | 25.0% |
| ! | GAAAATGAAGATTAGAAACA+GGG | + | chr6_4:5181322-5181341 | None:intergenic | 25.0% |
| ! | AGAAAATGAAGATTAGAAAC+AGG | + | chr6_4:5181323-5181342 | None:intergenic | 25.0% |
| ! | AAATGAGGAAAAAGTAATAG+TGG | + | chr6_4:5181561-5181580 | None:intergenic | 25.0% |
| !! | AACATTTCATGGATAATGGA+GGG | + | chr6_4:5175566-5175585 | None:intergenic | 30.0% |
| AAGCAACATTTCATGGATAA+TGG | + | chr6_4:5175570-5175589 | None:intergenic | 30.0% | |
| AAATGAAAAGGGAAGAAGAA+TGG | + | chr6_4:5175632-5175651 | None:intergenic | 30.0% | |
| TGCGAATAGTGAATTTAGAA+GGG | + | chr6_4:5175664-5175683 | None:intergenic | 30.0% | |
| TTTGTAGGATTAACATGAAG+AGG | - | chr6_4:5176194-5176213 | Msa0972860:intron | 30.0% | |
| GCTATAAGTTATAAGCTACT+TGG | - | chr6_4:5176661-5176680 | Msa0972860:CDS | 30.0% | |
| ATAAGTGTGTGAGAAAATGA+CGG | - | chr6_4:5176726-5176745 | Msa0972860:CDS | 30.0% | |
| GTTCGCTTCATATTTACTTA+GGG | + | chr6_4:5176824-5176843 | None:intergenic | 30.0% | |
| TGTTCGCTTCATATTTACTT+AGG | + | chr6_4:5176825-5176844 | None:intergenic | 30.0% | |
| GGTATCATATATATCTGTGT+TGG | - | chr6_4:5177033-5177052 | Msa0972860:intron | 30.0% | |
| TATATATCTGTGTTGGAAGT+AGG | - | chr6_4:5177040-5177059 | Msa0972860:intron | 30.0% | |
| TTTCATTTCAGACATGAATC+TGG | + | chr6_4:5177069-5177088 | None:intergenic | 30.0% | |
| AATTCCAAAACTCATTTCCA+CGG | + | chr6_4:5177177-5177196 | None:intergenic | 30.0% | |
| ACCAGCTGCTTATATAAAAA+AGG | - | chr6_4:5177260-5177279 | Msa0972860:intron | 30.0% | |
| !!! | ACCTTTTTTATATAAGCAGC+TGG | + | chr6_4:5177264-5177283 | None:intergenic | 30.0% |
| ! | TTTACAGTTTGATAAGTTGG+AGG | - | chr6_4:5177427-5177446 | Msa0972860:CDS | 30.0% |
| AAACGCATCACTTGAAAATT+GGG | + | chr6_4:5177481-5177500 | None:intergenic | 30.0% | |
| AAAACGCATCACTTGAAAAT+TGG | + | chr6_4:5177482-5177501 | None:intergenic | 30.0% | |
| !! | AAAAAGTGCTTTGCAACATA+TGG | - | chr6_4:5177904-5177923 | Msa0972860:intron | 30.0% |
| TGAACTCATTTCAGATGAAT+GGG | + | chr6_4:5177963-5177982 | None:intergenic | 30.0% | |
| AGTTGAAATCTCACTCTATT+GGG | + | chr6_4:5178055-5178074 | None:intergenic | 30.0% | |
| ! | AAGTTATTTCAAATGCATCC+TGG | + | chr6_4:5178360-5178379 | None:intergenic | 30.0% |
| ! | TGAGTACTTTTGTAAGTGTT+TGG | - | chr6_4:5178412-5178431 | Msa0972860:intron | 30.0% |
| ! | GAGTACTTTTGTAAGTGTTT+GGG | - | chr6_4:5178413-5178432 | Msa0972860:intron | 30.0% |
| ACTATTTCAATAACTGAGGA+TGG | + | chr6_4:5178525-5178544 | None:intergenic | 30.0% | |
| !!! | CTGTAGTTCTTTTGTTTTAC+AGG | - | chr6_4:5178606-5178625 | Msa0972860:CDS | 30.0% |
| GTCAATATTGCAGTAAAAAG+AGG | - | chr6_4:5178693-5178712 | Msa0972860:intron | 30.0% | |
| ! | ATTTGGAATATTGAGTAGCA+AGG | - | chr6_4:5178941-5178960 | Msa0972860:intron | 30.0% |
| TAAAACAGATTTGTAGGGTT+AGG | + | chr6_4:5179407-5179426 | None:intergenic | 30.0% | |
| ATTTAATTGCATTGCTGATC+TGG | - | chr6_4:5179485-5179504 | Msa0972860:CDS | 30.0% | |
| !!! | AAGTAACGGTCTTATTTTAC+AGG | - | chr6_4:5179612-5179631 | Msa0972860:intron | 30.0% |
| AGACTGATGTTGAGATATAA+TGG | + | chr6_4:5179659-5179678 | None:intergenic | 30.0% | |
| TAACTTCTTTATTCCGAGAA+AGG | + | chr6_4:5179727-5179746 | None:intergenic | 30.0% | |
| ! | AGATTCTGAAAGAAAGCATA+TGG | - | chr6_4:5179868-5179887 | Msa0972860:intron | 30.0% |
| !! | ACTTGTTACTTTAGAGTTAC+TGG | - | chr6_4:5180018-5180037 | Msa0972860:intron | 30.0% |
| TGGAAAATATGCATCTTCAT+TGG | - | chr6_4:5180392-5180411 | Msa0972860:intron | 30.0% | |
| TGCATCTTCATTGGAAATAT+CGG | - | chr6_4:5180401-5180420 | Msa0972860:intron | 30.0% | |
| AATATGTAATCAAGAAAGCG+TGG | - | chr6_4:5180438-5180457 | Msa0972860:intron | 30.0% | |
| ATCGTGGAAAGAATTATAGT+AGG | - | chr6_4:5180557-5180576 | Msa0972860:intron | 30.0% | |
| TCCTTTGTGAAAAGAGAATA+AGG | - | chr6_4:5180728-5180747 | Msa0972860:intron | 30.0% | |
| CCTTTGTGAAAAGAGAATAA+GGG | - | chr6_4:5180729-5180748 | Msa0972860:intron | 30.0% | |
| TGAAAAGAGAATAAGGGTAA+GGG | - | chr6_4:5180735-5180754 | Msa0972860:intron | 30.0% | |
| AAATGACTATGACATCATCA+AGG | - | chr6_4:5181504-5181523 | Msa0972860:CDS | 30.0% | |
| CAAAGCCAATAAATTGCAAT+AGG | - | chr6_4:5181656-5181675 | Msa0972860:CDS | 30.0% | |
| TGCAGGAAATGTAAAGAAAA+TGG | - | chr6_4:5181757-5181776 | Msa0972860:five_prime_UTR | 30.0% | |
| AGGAAATGTAAAGAAAATGG+AGG | - | chr6_4:5181760-5181779 | Msa0972860:five_prime_UTR | 30.0% | |
| GGAAATGTAAAGAAAATGGA+GGG | - | chr6_4:5181761-5181780 | Msa0972860:five_prime_UTR | 30.0% | |
| ! | CAACATTTCATGGATAATGG+AGG | + | chr6_4:5175567-5175586 | None:intergenic | 35.0% |
| TAGTTGGAAGCAACATTTCA+TGG | + | chr6_4:5175577-5175596 | None:intergenic | 35.0% | |
| ! | TGAATTTAGAAGGGGTTTTG+GGG | + | chr6_4:5175655-5175674 | None:intergenic | 35.0% |
| ! | GTGAATTTAGAAGGGGTTTT+GGG | + | chr6_4:5175656-5175675 | None:intergenic | 35.0% |
| ! | AGTGAATTTAGAAGGGGTTT+TGG | + | chr6_4:5175657-5175676 | None:intergenic | 35.0% |
| GCGAATAGTGAATTTAGAAG+GGG | + | chr6_4:5175663-5175682 | None:intergenic | 35.0% | |
| GTGCGAATAGTGAATTTAGA+AGG | + | chr6_4:5175665-5175684 | None:intergenic | 35.0% | |
| TAATGGAAGGAAGATTTCAC+CGG | + | chr6_4:5175828-5175847 | None:intergenic | 35.0% | |
| ATATTGAGGTTGAGGGAATT+AGG | - | chr6_4:5176055-5176074 | Msa0972860:intron | 35.0% | |
| TATTGAGGTTGAGGGAATTA+GGG | - | chr6_4:5176056-5176075 | Msa0972860:intron | 35.0% | |
| TGAGATGAAGCAGAAGATTA+AGG | - | chr6_4:5176081-5176100 | Msa0972860:intron | 35.0% | |
| ATGAAGCAGAAGATTAAGGT+TGG | - | chr6_4:5176085-5176104 | Msa0972860:intron | 35.0% | |
| AAGATTAAGGTTGGAAAAGC+CGG | - | chr6_4:5176094-5176113 | Msa0972860:intron | 35.0% | |
| TTAATGGAATTCATGAACGG+TGG | - | chr6_4:5176134-5176153 | Msa0972860:intron | 35.0% | |
| TTGTTTGTGAGGATCTTTGT+AGG | - | chr6_4:5176179-5176198 | Msa0972860:intron | 35.0% | |
| ! | GAAGAGGACTCATGATATTT+TGG | - | chr6_4:5176210-5176229 | Msa0972860:intron | 35.0% |
| CAGCAGATAATTGATAAGCT+AGG | - | chr6_4:5176407-5176426 | Msa0972860:intron | 35.0% | |
| TAGCAGATAATTGATACGCT+AGG | - | chr6_4:5176450-5176469 | Msa0972860:intron | 35.0% | |
| TAAATATGAAGCGAACACAG+CGG | - | chr6_4:5176828-5176847 | Msa0972860:CDS | 35.0% | |
| TTTGTAAAATTTCGCTACCG+TGG | - | chr6_4:5177157-5177176 | Msa0972860:CDS | 35.0% | |
| ! | TCAATCGTATTTTACCAGCT+TGG | + | chr6_4:5177215-5177234 | None:intergenic | 35.0% |
| ! | GTTTTCACACGTGACTTTTT+TGG | - | chr6_4:5177282-5177301 | Msa0972860:intron | 35.0% |
| !! | CCAATTCTTAAGAAGTGTCA+TGG | + | chr6_4:5177318-5177337 | None:intergenic | 35.0% |
| CCATGACACTTCTTAAGAAT+TGG | - | chr6_4:5177315-5177334 | Msa0972860:intron | 35.0% | |
| CAATTTAATCGCTTGTGCAT+GGG | + | chr6_4:5177400-5177419 | None:intergenic | 35.0% | |
| TCAATTTAATCGCTTGTGCA+TGG | + | chr6_4:5177401-5177420 | None:intergenic | 35.0% | |
| AACGCATCACTTGAAAATTG+GGG | + | chr6_4:5177480-5177499 | None:intergenic | 35.0% | |
| TTGTCATGTCAGAGAAAAAC+TGG | - | chr6_4:5177782-5177801 | Msa0972860:intron | 35.0% | |
| ACTTCATCTGATAGGAAGTA+AGG | + | chr6_4:5177872-5177891 | None:intergenic | 35.0% | |
| CTCTCAAAACTTCATCTGAT+AGG | + | chr6_4:5177880-5177899 | None:intergenic | 35.0% | |
| CTGAACTCATTTCAGATGAA+TGG | + | chr6_4:5177964-5177983 | None:intergenic | 35.0% | |
| !!! | TTGTACCAAAGCTGGTTTTA+CGG | + | chr6_4:5178020-5178039 | None:intergenic | 35.0% |
| CAGTTGAAATCTCACTCTAT+TGG | + | chr6_4:5178056-5178075 | None:intergenic | 35.0% | |
| !!! | TTTACCATGCCATTTTGCAT+TGG | - | chr6_4:5178294-5178313 | Msa0972860:intron | 35.0% |
| !!! | TTACCATGCCATTTTGCATT+GGG | - | chr6_4:5178295-5178314 | Msa0972860:intron | 35.0% |
| CAATAACTGAGGATGGAATT+AGG | + | chr6_4:5178518-5178537 | None:intergenic | 35.0% | |
| GGTAGAAATAGGAAACTTCA+AGG | - | chr6_4:5178627-5178646 | Msa0972860:intron | 35.0% | |
| AAATAGGAAACTTCAAGGAG+TGG | - | chr6_4:5178632-5178651 | Msa0972860:intron | 35.0% | |
| TGCTGCAATTATCAAGTTCT+GGG | - | chr6_4:5178656-5178675 | Msa0972860:intron | 35.0% | |
| GAAAATGGCTGAAGAGATTA+AGG | - | chr6_4:5178737-5178756 | Msa0972860:intron | 35.0% | |
| TAACTCTCATCAACCATTGA+AGG | + | chr6_4:5178975-5178994 | None:intergenic | 35.0% | |
| TTGAACCTGTGACCTATTAT+GGG | - | chr6_4:5179238-5179257 | Msa0972860:CDS | 35.0% | |
| ACAACAACTTCACCCATAAT+AGG | + | chr6_4:5179253-5179272 | None:intergenic | 35.0% | |
| TATTATGGGTGAAGTTGTTG+TGG | - | chr6_4:5179252-5179271 | Msa0972860:CDS | 35.0% | |
| !!! | GTGGTGATACTTTTTTTACG+AGG | - | chr6_4:5179286-5179305 | Msa0972860:CDS | 35.0% |
| !!! | TTTTTTTACGAGGCCTAACT+TGG | - | chr6_4:5179296-5179315 | Msa0972860:CDS | 35.0% |
| ATGCAATACTTGTCCAAGTT+AGG | + | chr6_4:5179312-5179331 | None:intergenic | 35.0% | |
| CTTCAGCAATTAAACAGAGA+TGG | - | chr6_4:5179789-5179808 | Msa0972860:intron | 35.0% | |
| ! | GCTTTAGCCTTCATCAATAA+TGG | + | chr6_4:5179926-5179945 | None:intergenic | 35.0% |
| ! | TCAAAGGACTAGCATCAAAT+TGG | - | chr6_4:5179952-5179971 | Msa0972860:intron | 35.0% |
| !! | TGTTACTTTAGAGTTACTGG+TGG | - | chr6_4:5180021-5180040 | Msa0972860:intron | 35.0% |
| ! | GTGGTATAGCTTTTACATAC+AGG | - | chr6_4:5180040-5180059 | Msa0972860:intron | 35.0% |
| ! | TGAAAAGCTTCTAGAAAGTC+TGG | - | chr6_4:5180085-5180104 | Msa0972860:intron | 35.0% |
| AAGAAGAGAGATACATGTTG+CGG | - | chr6_4:5180159-5180178 | Msa0972860:intron | 35.0% | |
| TCTTAATTATCAGGAAGACG+AGG | - | chr6_4:5180352-5180371 | Msa0972860:intron | 35.0% | |
| CTTAATTATCAGGAAGACGA+GGG | - | chr6_4:5180353-5180372 | Msa0972860:intron | 35.0% | |
| TTAATTATCAGGAAGACGAG+GGG | - | chr6_4:5180354-5180373 | Msa0972860:intron | 35.0% | |
| GCATCTTCATTGGAAATATC+GGG | - | chr6_4:5180402-5180421 | Msa0972860:intron | 35.0% | |
| TACGCAATCATTGTTTATCG+TGG | - | chr6_4:5180541-5180560 | Msa0972860:intron | 35.0% | |
| ! | TGTTGGAGTGTCAGATAATT+TGG | - | chr6_4:5180695-5180714 | Msa0972860:intron | 35.0% |
| ! | CCCTTATTCTCTTTTCACAA+AGG | + | chr6_4:5180732-5180751 | None:intergenic | 35.0% |
| GTGAAAAGAGAATAAGGGTA+AGG | - | chr6_4:5180734-5180753 | Msa0972860:intron | 35.0% | |
| ! | TTCGTTTTGTGTTTGACAAG+TGG | - | chr6_4:5181057-5181076 | Msa0972860:intron | 35.0% |
| TTAAGTGTAAAGGAGAACAC+AGG | - | chr6_4:5181384-5181403 | Msa0972860:CDS | 35.0% | |
| !! | AAGGTGTTGAAGTTGGTAGT+TGG | + | chr6_4:5175593-5175612 | None:intergenic | 40.0% |
| !! | AGTGAAGAAGGTGTTGAAGT+TGG | + | chr6_4:5175600-5175619 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGGGAAATGAAAA+GGG | + | chr6_4:5175643-5175662 | None:intergenic | 40.0% |
| AAGAAGAAGAGGAAGAGGAT+TGG | + | chr6_4:5175781-5175800 | None:intergenic | 40.0% | |
| AGTTGTTAGGGTTGTTTGTG+AGG | - | chr6_4:5176168-5176187 | Msa0972860:intron | 40.0% | |
| !! | GAGGACTCATGATATTTTGG+AGG | - | chr6_4:5176213-5176232 | Msa0972860:intron | 40.0% |
| AGCTAGGTGATAGCAGATTA+AGG | - | chr6_4:5176423-5176442 | Msa0972860:intron | 40.0% | |
| GCTAGGTGATAGCAGATTAA+GGG | - | chr6_4:5176424-5176443 | Msa0972860:intron | 40.0% | |
| CAGTGTCTACGTATCAATGT+TGG | + | chr6_4:5176862-5176881 | None:intergenic | 40.0% | |
| CTCACGTCTTTAGTCTGATA+GGG | - | chr6_4:5176945-5176964 | Msa0972860:CDS | 40.0% | |
| TCACGTCTTTAGTCTGATAG+GGG | - | chr6_4:5176946-5176965 | Msa0972860:CDS | 40.0% | |
| AACATCATAATGTGCCAAGC+TGG | - | chr6_4:5177198-5177217 | Msa0972860:CDS | 40.0% | |
| !!! | TTCACACGTGACTTTTTTGG+TGG | - | chr6_4:5177285-5177304 | Msa0972860:intron | 40.0% |
| AACCTTGTAAGCAACACCTA+TGG | - | chr6_4:5177347-5177366 | Msa0972860:intron | 40.0% | |
| ACCTTGTAAGCAACACCTAT+GGG | - | chr6_4:5177348-5177367 | Msa0972860:intron | 40.0% | |
| !! | TTGGAGGTGTCAAGTTGATA+GGG | - | chr6_4:5177443-5177462 | Msa0972860:CDS | 40.0% |
| TCCTAGGCTAGATATTCTGA+AGG | - | chr6_4:5177549-5177568 | Msa0972860:CDS | 40.0% | |
| TCCTTCAGAATATCTAGCCT+AGG | + | chr6_4:5177553-5177572 | None:intergenic | 40.0% | |
| ATGGGACACCCAAATCATAT+TGG | + | chr6_4:5177730-5177749 | None:intergenic | 40.0% | |
| TCATGTCAGAGAAAAACTGG+AGG | - | chr6_4:5177785-5177804 | Msa0972860:intron | 40.0% | |
| !! | AAACTGGAGGACTTGTTGTT+TGG | - | chr6_4:5177798-5177817 | Msa0972860:intron | 40.0% |
| CAAAACCGTAAAACCAGCTT+TGG | - | chr6_4:5178012-5178031 | Msa0972860:intron | 40.0% | |
| ! | GTAAAACCAGCTTTGGTACA+AGG | - | chr6_4:5178019-5178038 | Msa0972860:intron | 40.0% |
| !! | AGAAGTAGACAGCTTGTTAG+AGG | - | chr6_4:5178099-5178118 | Msa0972860:intron | 40.0% |
| !! | GAAGTAGACAGCTTGTTAGA+GGG | - | chr6_4:5178100-5178119 | Msa0972860:intron | 40.0% |
| ATGACCACATTGAAGAGACT+TGG | - | chr6_4:5178265-5178284 | Msa0972860:intron | 40.0% | |
| CAAACTGACCCAATGCAAAA+TGG | + | chr6_4:5178306-5178325 | None:intergenic | 40.0% | |
| AACTTACCAAATATGGGTCC+AGG | - | chr6_4:5178339-5178358 | Msa0972860:intron | 40.0% | |
| CTGCTGCAATTATCAAGTTC+TGG | - | chr6_4:5178655-5178674 | Msa0972860:intron | 40.0% | |
| CACATAACACCAAAAAGAGC+AGG | + | chr6_4:5178864-5178883 | None:intergenic | 40.0% | |
| CAAGGATATGTCACCTTCAA+TGG | - | chr6_4:5178959-5178978 | Msa0972860:intron | 40.0% | |
| !! | TTTTGGGTGACAAGAGGTAA+TGG | + | chr6_4:5179101-5179120 | None:intergenic | 40.0% |
| ! | TTGTCACCCAAAATGATGGA+CGG | - | chr6_4:5179108-5179127 | Msa0972860:CDS | 40.0% |
| ! | TCAACACCGTCCATCATTTT+GGG | + | chr6_4:5179117-5179136 | None:intergenic | 40.0% |
| ! | TTCAACACCGTCCATCATTT+TGG | + | chr6_4:5179118-5179137 | None:intergenic | 40.0% |
| ! | GAAACGAAAGTATGCTGTGT+TGG | - | chr6_4:5179144-5179163 | Msa0972860:CDS | 40.0% |
| GTTGAACCTGTGACCTATTA+TGG | - | chr6_4:5179237-5179256 | Msa0972860:CDS | 40.0% | |
| AGGTCAACACTATCGAACAT+TGG | + | chr6_4:5179354-5179373 | None:intergenic | 40.0% | |
| CAGATTTGTAGGGTTAGGTT+AGG | + | chr6_4:5179402-5179421 | None:intergenic | 40.0% | |
| TTCGAAAGCCACCTTAATTG+TGG | + | chr6_4:5179435-5179454 | None:intergenic | 40.0% | |
| AGGCTAAAGCAGCTATTCAA+AGG | - | chr6_4:5179936-5179955 | Msa0972860:intron | 40.0% | |
| AGATACATGTTGCGGAGAAT+TGG | - | chr6_4:5180167-5180186 | Msa0972860:intron | 40.0% | |
| AAGTCACCTAGCAACAAGAA+GGG | + | chr6_4:5180206-5180225 | None:intergenic | 40.0% | |
| AAAGTCACCTAGCAACAAGA+AGG | + | chr6_4:5180207-5180226 | None:intergenic | 40.0% | |
| ATAGTAGGCCTGATAGTTTG+AGG | - | chr6_4:5180572-5180591 | Msa0972860:intron | 40.0% | |
| ! | AGCATTGAAGCGTTCAATAG+AGG | - | chr6_4:5180621-5180640 | Msa0972860:intron | 40.0% |
| ! | ACGGTGACAATTTTACCTCA+CGG | + | chr6_4:5180654-5180673 | None:intergenic | 40.0% |
| AAAGAGAATAAGGGTAAGGG+TGG | - | chr6_4:5180738-5180757 | Msa0972860:intron | 40.0% | |
| AAGAGAATAAGGGTAAGGGT+GGG | - | chr6_4:5180739-5180758 | Msa0972860:intron | 40.0% | |
| !! | GAGAGTATTGTTTGCATGGT+TGG | - | chr6_4:5180763-5180782 | Msa0972860:intron | 40.0% |
| ! | TGGAAGAGGAAAGAAAGTGT+GGG | + | chr6_4:5181125-5181144 | None:intergenic | 40.0% |
| TTGGAAGAGGAAAGAAAGTG+TGG | + | chr6_4:5181126-5181145 | None:intergenic | 40.0% | |
| ! | TGCAGAGATTCCTCTTTTGA+TGG | - | chr6_4:5181353-5181372 | Msa0972860:CDS | 40.0% |
| !! | ATTCCTCTTTTGATGGACGA+AGG | - | chr6_4:5181360-5181379 | Msa0972860:CDS | 40.0% |
| AAACCTTCGTCCATCAAAAG+AGG | + | chr6_4:5181366-5181385 | None:intergenic | 40.0% | |
| GGACGAAGGTTTAAGTGTAA+AGG | - | chr6_4:5181374-5181393 | Msa0972860:CDS | 40.0% | |
| GGGAAGAAGAATGGAGAAGA+GGG | + | chr6_4:5175623-5175642 | None:intergenic | 45.0% | |
| AGGGAAGAAGAATGGAGAAG+AGG | + | chr6_4:5175624-5175643 | None:intergenic | 45.0% | |
| !!! | GGGGTTTTGGGGAAATGAAA+AGG | + | chr6_4:5175644-5175663 | None:intergenic | 45.0% |
| TTTATCGGCGATGCGTTGAA+TGG | + | chr6_4:5175723-5175742 | None:intergenic | 45.0% | |
| GCCTAGGGAATGGAGTTTAT+CGG | + | chr6_4:5175738-5175757 | None:intergenic | 45.0% | |
| ! | AGAAGAGGAAGAGGATTGGT+CGG | + | chr6_4:5175777-5175796 | None:intergenic | 45.0% |
| ! | TTTGGGAGTGTGTGTGGTAA+TGG | + | chr6_4:5175845-5175864 | None:intergenic | 45.0% |
| ACTAGAGGAACTGGATTCTC+CGG | + | chr6_4:5175908-5175927 | None:intergenic | 45.0% | |
| GAGAATCCAGTTCCTCTAGT+TGG | - | chr6_4:5175908-5175927 | Msa0972860:intron | 45.0% | |
| AAACTCAACTCCGCTAACGT+CGG | + | chr6_4:5176022-5176041 | None:intergenic | 45.0% | |
| CGGAGTTGAGTTTGACAGAT+GGG | - | chr6_4:5176029-5176048 | Msa0972860:intron | 45.0% | |
| GGAGTTGAGTTTGACAGATG+GGG | - | chr6_4:5176030-5176049 | Msa0972860:intron | 45.0% | |
| TGACAGATGGGGAGATATTG+AGG | - | chr6_4:5176041-5176060 | Msa0972860:intron | 45.0% | |
| ATGGGGAGATATTGAGGTTG+AGG | - | chr6_4:5176047-5176066 | Msa0972860:intron | 45.0% | |
| TGGGGAGATATTGAGGTTGA+GGG | - | chr6_4:5176048-5176067 | Msa0972860:intron | 45.0% | |
| ! | GTGACGGAAGGGATTGTTAA+TGG | - | chr6_4:5176118-5176137 | Msa0972860:intron | 45.0% |
| GCGAAGATCGGAAGTTGTTA+GGG | - | chr6_4:5176156-5176175 | Msa0972860:intron | 45.0% | |
| TGCGTGTAGCAGATAGTTGA+TGG | - | chr6_4:5176497-5176516 | Msa0972860:intron | 45.0% | |
| GCTCACGTCTTTAGTCTGAT+AGG | - | chr6_4:5176944-5176963 | Msa0972860:CDS | 45.0% | |
| ! | GCTACCGTGGAAATGAGTTT+TGG | - | chr6_4:5177170-5177189 | Msa0972860:CDS | 45.0% |
| !! | TCCCATAGGTGTTGCTTACA+AGG | + | chr6_4:5177352-5177371 | None:intergenic | 45.0% |
| ACCTATGGGAGATGCTCTTA+TGG | - | chr6_4:5177362-5177381 | Msa0972860:CDS | 45.0% | |
| CCTATGGGAGATGCTCTTAT+GGG | - | chr6_4:5177363-5177382 | Msa0972860:CDS | 45.0% | |
| !! | GTTGGAGGTGTCAAGTTGAT+AGG | - | chr6_4:5177442-5177461 | Msa0972860:CDS | 45.0% |
| !! | GGACTTGTTGTTTGGAGATC+TGG | - | chr6_4:5177806-5177825 | Msa0972860:intron | 45.0% |
| TGAACTTTGTCCAGCATGTG+TGG | + | chr6_4:5177987-5178006 | None:intergenic | 45.0% | |
| AGAGTGAGATTTCAACTGCC+AGG | - | chr6_4:5178058-5178077 | Msa0972860:intron | 45.0% | |
| TCTAAAAGCTCTGCTTCACC+TGG | + | chr6_4:5178079-5178098 | None:intergenic | 45.0% | |
| !! | ACAGCTTGTTAGAGGGTCTT+GGG | - | chr6_4:5178107-5178126 | Msa0972860:intron | 45.0% |
| TTGGGCCTCGATTTACGTAT+TGG | - | chr6_4:5178125-5178144 | Msa0972860:intron | 45.0% | |
| ! | GCCTCGATTTACGTATTGGT+GGG | - | chr6_4:5178129-5178148 | Msa0972860:intron | 45.0% |
| ! | CCTCGATTTACGTATTGGTG+GGG | - | chr6_4:5178130-5178149 | Msa0972860:intron | 45.0% |
| ! | CTCGATTTACGTATTGGTGG+GGG | - | chr6_4:5178131-5178150 | Msa0972860:intron | 45.0% |
| GGTAGAAGATCAGCATCAAC+AGG | + | chr6_4:5178169-5178188 | None:intergenic | 45.0% | |
| CTAAATCCAGGAATAACGGC+AGG | + | chr6_4:5178190-5178209 | None:intergenic | 45.0% | |
| CTGCCGTTATTCCTGGATTT+AGG | - | chr6_4:5178188-5178207 | Msa0972860:intron | 45.0% | |
| CGGCCTAAATCCAGGAATAA+CGG | + | chr6_4:5178194-5178213 | None:intergenic | 45.0% | |
| TATGGAAGTAGGCGAAAAGG+CGG | + | chr6_4:5178214-5178233 | None:intergenic | 45.0% | |
| CCATATGGAAGTAGGCGAAA+AGG | + | chr6_4:5178217-5178236 | None:intergenic | 45.0% | |
| ! | CCTTTTCGCCTACTTCCATA+TGG | - | chr6_4:5178214-5178233 | Msa0972860:intron | 45.0% |
| ACTGCACACCATATGGAAGT+AGG | + | chr6_4:5178225-5178244 | None:intergenic | 45.0% | |
| AGCTTAGACTGCACACCATA+TGG | + | chr6_4:5178232-5178251 | None:intergenic | 45.0% | |
| TGGTGTGCAGTCTAAGCTAA+CGG | - | chr6_4:5178234-5178253 | Msa0972860:intron | 45.0% | |
| TCTGCCAAGTCTCTTCAATG+TGG | + | chr6_4:5178272-5178291 | None:intergenic | 45.0% | |
| TGACCCAATGCAAAATGGCA+TGG | + | chr6_4:5178301-5178320 | None:intergenic | 45.0% | |
| ATGCATCCTGGACCCATATT+TGG | + | chr6_4:5178348-5178367 | None:intergenic | 45.0% | |
| TGGCTGAAGAGATTAAGGTC+AGG | - | chr6_4:5178742-5178761 | Msa0972860:intron | 45.0% | |
| ! | AAGCCTGTACCTGCTCTTTT+TGG | - | chr6_4:5178852-5178871 | Msa0972860:intron | 45.0% |
| ACACCAAAAAGAGCAGGTAC+AGG | + | chr6_4:5178858-5178877 | None:intergenic | 45.0% | |
| !! | CCATCATTTTGGGTGACAAG+AGG | + | chr6_4:5179107-5179126 | None:intergenic | 45.0% |
| CCTCTTGTCACCCAAAATGA+TGG | - | chr6_4:5179104-5179123 | Msa0972860:CDS | 45.0% | |
| CTTCACCCATAATAGGTCAC+AGG | + | chr6_4:5179246-5179265 | None:intergenic | 45.0% | |
| !! | TCGATAGTGTTGACCTGTAG+AGG | - | chr6_4:5179358-5179377 | Msa0972860:CDS | 45.0% |
| !! | TAGTGTTGACCTGTAGAGGA+TGG | - | chr6_4:5179362-5179381 | Msa0972860:CDS | 45.0% |
| AGTCAGATACTGCAGAGAAG+TGG | + | chr6_4:5179693-5179712 | None:intergenic | 45.0% | |
| ACTTCTCTGCAGTATCTGAC+TGG | - | chr6_4:5179692-5179711 | Msa0972860:intron | 45.0% | |
| ATTGCTGAAGAAACTGCAGC+AGG | + | chr6_4:5179779-5179798 | None:intergenic | 45.0% | |
| GACTAGCATCAAATTGGCAC+AGG | - | chr6_4:5179958-5179977 | Msa0972860:intron | 45.0% | |
| ATGAAGCCCTTCTTGTTGCT+AGG | - | chr6_4:5180197-5180216 | Msa0972860:intron | 45.0% | |
| ! | GAAGACGAGGGGTTTTTGAT+GGG | - | chr6_4:5180365-5180384 | Msa0972860:intron | 45.0% |
| ACCTTAGAGTCAGAAAGTGG+TGG | - | chr6_4:5180484-5180503 | Msa0972860:intron | 45.0% | |
| TCCACCACTTTCTGACTCTA+AGG | + | chr6_4:5180488-5180507 | None:intergenic | 45.0% | |
| AGCAGTAGAGAGAGTGAACA+AGG | - | chr6_4:5180516-5180535 | Msa0972860:intron | 45.0% | |
| GCAGTAGAGAGAGTGAACAA+GGG | - | chr6_4:5180517-5180536 | Msa0972860:intron | 45.0% | |
| !! | GGGAGAGAGTATTGTTTGCA+TGG | - | chr6_4:5180759-5180778 | Msa0972860:intron | 45.0% |
| TGCAGCTTTGCTTGACAAGT+GGG | - | chr6_4:5181034-5181053 | Msa0972860:intron | 45.0% | |
| GTGTAAAGGAGAACACAGGA+AGG | - | chr6_4:5181388-5181407 | Msa0972860:CDS | 45.0% | |
| TGGAGAAGAGGGAGTGAAGA+AGG | + | chr6_4:5175612-5175631 | None:intergenic | 50.0% | |
| GGTGTGGGAATTAGAAGAGG+AGG | + | chr6_4:5175687-5175706 | None:intergenic | 50.0% | |
| ! | GAGGGTGTGGGAATTAGAAG+AGG | + | chr6_4:5175690-5175709 | None:intergenic | 50.0% |
| ! | TTGAATGGCGGAATCAGGGA+GGG | + | chr6_4:5175708-5175727 | None:intergenic | 50.0% |
| ! | TGCGTTGAATGGCGGAATCA+GGG | + | chr6_4:5175712-5175731 | None:intergenic | 50.0% |
| ! | ATGCGTTGAATGGCGGAATC+AGG | + | chr6_4:5175713-5175732 | None:intergenic | 50.0% |
| GCCGATAAACTCCATTCCCT+AGG | - | chr6_4:5175734-5175753 | Msa0972860:intron | 50.0% | |
| GGAGGAAGAAGAAGAGGAAG+AGG | + | chr6_4:5175786-5175805 | None:intergenic | 50.0% | |
| GGTTGTGGAGGAAGAAGAAG+AGG | + | chr6_4:5175792-5175811 | None:intergenic | 50.0% | |
| TGGAAGGAAGATTTCACCGG+CGG | + | chr6_4:5175825-5175844 | None:intergenic | 50.0% | |
| !! | GGAGTGTGTGTGGTAATGGA+AGG | + | chr6_4:5175841-5175860 | None:intergenic | 50.0% |
| ! | TGAAGTTGAGAGAGCGCGAT+TGG | - | chr6_4:5175958-5175977 | Msa0972860:CDS | 50.0% |
| AGAAGGAGAGGAAGGAGAAG+AGG | - | chr6_4:5175987-5176006 | Msa0972860:intron | 50.0% | |
| !! | GAAGAGAGTACCGACGTTAG+CGG | - | chr6_4:5176009-5176028 | Msa0972860:intron | 50.0% |
| GCGGAGTTGAGTTTGACAGA+TGG | - | chr6_4:5176028-5176047 | Msa0972860:intron | 50.0% | |
| AACAATCCCTTCCGTCACAC+CGG | + | chr6_4:5176116-5176135 | None:intergenic | 50.0% | |
| TCATGAACGGTGGCGAAGAT+CGG | - | chr6_4:5176144-5176163 | Msa0972860:intron | 50.0% | |
| GGCGAAGATCGGAAGTTGTT+AGG | - | chr6_4:5176155-5176174 | Msa0972860:intron | 50.0% | |
| GACGTGAGCAGTGTCTCATA+CGG | + | chr6_4:5176933-5176952 | None:intergenic | 50.0% | |
| CGTCTTTAGTCTGATAGGGG+TGG | - | chr6_4:5176949-5176968 | Msa0972860:CDS | 50.0% | |
| !! | CCCATAAGAGCATCTCCCAT+AGG | + | chr6_4:5177366-5177385 | None:intergenic | 50.0% |
| ATGAGTTCAGCCACACATGC+TGG | - | chr6_4:5177974-5177993 | Msa0972860:intron | 50.0% | |
| ! | CCAGCTTTGGTACAAGGAGT+CGG | - | chr6_4:5178025-5178044 | Msa0972860:intron | 50.0% |
| !! | GACAGCTTGTTAGAGGGTCT+TGG | - | chr6_4:5178106-5178125 | Msa0972860:intron | 50.0% |
| GGCCTCGATTTACGTATTGG+TGG | - | chr6_4:5178128-5178147 | Msa0972860:intron | 50.0% | |
| CCCCACCAATACGTAAATCG+AGG | + | chr6_4:5178133-5178152 | None:intergenic | 50.0% | |
| GATCAGCATCAACAGGCACA+GGG | + | chr6_4:5178162-5178181 | None:intergenic | 50.0% | |
| AGATCAGCATCAACAGGCAC+AGG | + | chr6_4:5178163-5178182 | None:intergenic | 50.0% | |
| CTTCTACCTGCCGTTATTCC+TGG | - | chr6_4:5178181-5178200 | Msa0972860:intron | 50.0% | |
| !! | AAAAGTATCACCACCGCTCG+AGG | + | chr6_4:5179280-5179299 | None:intergenic | 50.0% |
| AGCTCAACACCATCCTCTAC+AGG | + | chr6_4:5179374-5179393 | None:intergenic | 50.0% | |
| ! | AGAGGATGGTGTTGAGCTGT+AGG | - | chr6_4:5179376-5179395 | Msa0972860:CDS | 50.0% |
| TGATCTGGCACAACTGTTCG+AGG | - | chr6_4:5179500-5179519 | Msa0972860:CDS | 50.0% | |
| GATCTGGCACAACTGTTCGA+GGG | - | chr6_4:5179501-5179520 | Msa0972860:CDS | 50.0% | |
| GAGGGAAGCTAGTCAAACAC+TGG | - | chr6_4:5179519-5179538 | Msa0972860:CDS | 50.0% | |
| TCTCTGCAGTATCTGACTGG+AGG | - | chr6_4:5179695-5179714 | Msa0972860:intron | 50.0% | |
| CTGGAGGAACTCTCCTTTCT+CGG | - | chr6_4:5179711-5179730 | Msa0972860:intron | 50.0% | |
| ! | GGAAGACGAGGGGTTTTTGA+TGG | - | chr6_4:5180364-5180383 | Msa0972860:intron | 50.0% |
| ! | AGGGGTTTTTGATGGGACAG+TGG | - | chr6_4:5180372-5180391 | Msa0972860:intron | 50.0% |
| AATATGCCCACGAGACAGCT+CGG | - | chr6_4:5180461-5180480 | Msa0972860:intron | 50.0% | |
| CGGACCTTAGAGTCAGAAAG+TGG | - | chr6_4:5180481-5180500 | Msa0972860:intron | 50.0% | |
| CTGCATGTGAGCTTGACATC+TGG | - | chr6_4:5180987-5181006 | Msa0972860:intron | 50.0% | |
| CAAGCAAAGCTGCAGCCAAA+TGG | + | chr6_4:5181028-5181047 | None:intergenic | 50.0% | |
| CTGCAGCTTTGCTTGACAAG+TGG | - | chr6_4:5181033-5181052 | Msa0972860:intron | 50.0% | |
| ! | GTTGAATGGCGGAATCAGGG+AGG | + | chr6_4:5175709-5175728 | None:intergenic | 55.0% |
| ATCGGCGATGCGTTGAATGG+CGG | + | chr6_4:5175720-5175739 | None:intergenic | 55.0% | |
| ! | TGGTGGTGATGCCTAGGGAA+TGG | + | chr6_4:5175748-5175767 | None:intergenic | 55.0% |
| !! | AGAGGAAGAGGATTGGTCGG+TGG | + | chr6_4:5175774-5175793 | None:intergenic | 55.0% |
| AAGGAAGATTTCACCGGCGG+AGG | + | chr6_4:5175822-5175841 | None:intergenic | 55.0% | |
| !!! | CGGTGTTTTGGGAGTGTGTG+TGG | + | chr6_4:5175851-5175870 | None:intergenic | 55.0% |
| ACACTCCCAAAACACCGCGT+CGG | - | chr6_4:5175854-5175873 | Msa0972860:intron | 55.0% | |
| ! | TGTGACCGACGCGGTGTTTT+GGG | + | chr6_4:5175862-5175881 | None:intergenic | 55.0% |
| GATTGGCGAAGGAGAAGGAG+AGG | - | chr6_4:5175975-5175994 | Msa0972860:intron | 55.0% | |
| GGTTGGAAAAGCCGGTGTGA+CGG | - | chr6_4:5176102-5176121 | Msa0972860:intron | 55.0% | |
| ! | GAAAAGCCGGTGTGACGGAA+GGG | - | chr6_4:5176107-5176126 | Msa0972860:intron | 55.0% |
| GGCGCTACTGCTACATACTG+AGG | - | chr6_4:5176970-5176989 | Msa0972860:intron | 55.0% | |
| CCGACTCCTTGTACCAAAGC+TGG | + | chr6_4:5178028-5178047 | None:intergenic | 55.0% | |
| CGAAAAGGCGGCCTAAATCC+AGG | + | chr6_4:5178202-5178221 | None:intergenic | 55.0% | |
| ! | GAGCAGGTACAGGCTTTGAC+AGG | + | chr6_4:5178848-5178867 | None:intergenic | 55.0% |
| AGTTGTTGTGGCACCTCGAG+CGG | - | chr6_4:5179264-5179283 | Msa0972860:CDS | 55.0% | |
| TAAGGTCCGAGCTGTCTCGT+GGG | + | chr6_4:5180470-5180489 | None:intergenic | 55.0% | |
| GTTCGCGGCCTCAAACTATC+AGG | + | chr6_4:5180583-5180602 | None:intergenic | 55.0% | |
| ! | AATAGAGGCACAACGCCGTG+AGG | - | chr6_4:5180636-5180655 | Msa0972860:intron | 55.0% |
| ! | CTGCCTGTGTGTGTGCCATT+TGG | - | chr6_4:5181010-5181029 | Msa0972860:intron | 55.0% |
| CAGCCAAATGGCACACACAC+AGG | + | chr6_4:5181016-5181035 | None:intergenic | 55.0% | |
| !! | GGTGGTGGTGGTGATGCCTA+GGG | + | chr6_4:5175753-5175772 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGTGATGCCT+AGG | + | chr6_4:5175754-5175773 | None:intergenic | 60.0% |
| !! | AGAGGATTGGTCGGTGGTGG+TGG | + | chr6_4:5175768-5175787 | None:intergenic | 60.0% |
| !! | GGAAGAGGATTGGTCGGTGG+TGG | + | chr6_4:5175771-5175790 | None:intergenic | 60.0% |
| GAAGATTTCACCGGCGGAGG+TGG | + | chr6_4:5175819-5175838 | None:intergenic | 60.0% | |
| ! | GTGTGACCGACGCGGTGTTT+TGG | + | chr6_4:5175863-5175882 | None:intergenic | 60.0% |
| GTCACACACTCGACCTCAGC+TGG | - | chr6_4:5175876-5175895 | Msa0972860:intron | 60.0% | |
| CCTGCGCCAACTAGAGGAAC+TGG | + | chr6_4:5175917-5175936 | None:intergenic | 60.0% | |
| CCAGTTCCTCTAGTTGGCGC+AGG | - | chr6_4:5175914-5175933 | Msa0972860:intron | 60.0% | |
| TCGAGTCCTGCGCCAACTAG+AGG | + | chr6_4:5175923-5175942 | None:intergenic | 60.0% | |
| ! | TGAGAGAGCGCGATTGGCGA+AGG | - | chr6_4:5175964-5175983 | Msa0972860:intron | 60.0% |
| AGCGCGATTGGCGAAGGAGA+AGG | - | chr6_4:5175970-5175989 | Msa0972860:intron | 60.0% | |
| GGCGAAGGAGAAGGAGAGGA+AGG | - | chr6_4:5175979-5175998 | Msa0972860:intron | 60.0% | |
| ! | GGAAAAGCCGGTGTGACGGA+AGG | - | chr6_4:5176106-5176125 | Msa0972860:intron | 60.0% |
| CTAAGGTCCGAGCTGTCTCG+TGG | + | chr6_4:5180471-5180490 | None:intergenic | 60.0% | |
| ! | GGCGGAATCAGGGAGGGTGT+GGG | + | chr6_4:5175702-5175721 | None:intergenic | 65.0% |
| TGGCGGAATCAGGGAGGGTG+TGG | + | chr6_4:5175703-5175722 | None:intergenic | 65.0% | |
| !! | GGATTGGTCGGTGGTGGTGG+TGG | + | chr6_4:5175765-5175784 | None:intergenic | 65.0% |
| !! | GGAGGTGGTGGAGGTTGTGG+AGG | + | chr6_4:5175804-5175823 | None:intergenic | 65.0% |
| ACAACCTCCACCACCTCCGC+CGG | - | chr6_4:5175806-5175825 | Msa0972860:intron | 65.0% | |
| GATTTCACCGGCGGAGGTGG+TGG | + | chr6_4:5175816-5175835 | None:intergenic | 65.0% | |
| GGTCGAGTGTGTGACCGACG+CGG | + | chr6_4:5175871-5175890 | None:intergenic | 65.0% | |
| CGACCTCAGCTGGAGCACAC+CGG | - | chr6_4:5175886-5175905 | Msa0972860:intron | 65.0% | |
| TCTCCGGTGTGCTCCAGCTG+AGG | + | chr6_4:5175892-5175911 | None:intergenic | 65.0% | |
| TGTTGTGGCACCTCGAGCGG+TGG | - | chr6_4:5179267-5179286 | Msa0972860:CDS | 65.0% | |
| !! | GGCGGAGGTGGTGGAGGTTG+TGG | + | chr6_4:5175807-5175826 | None:intergenic | 70.0% |
| ! | TTCACCGGCGGAGGTGGTGG+AGG | + | chr6_4:5175813-5175832 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 5175549 | 5181786 | 5175549 | ID=Msa0972860;Name=Msa0972860 |
| chr6_4 | mRNA | 5175549 | 5181786 | 5175549 | ID=Msa0972860-mRNA-1;Parent=Msa0972860;Name=Msa0972860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=32|0.57|0.62|1|1|1|8|0|684 |
| chr6_4 | exon | 5175549 | 5175573 | 5175549 | ID=Msa0972860-mRNA-1:exon:2220;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5175926 | 5175977 | 5175926 | ID=Msa0972860-mRNA-1:exon:2219;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5176656 | 5176970 | 5176656 | ID=Msa0972860-mRNA-1:exon:2218;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5177117 | 5177273 | 5177117 | ID=Msa0972860-mRNA-1:exon:2217;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5177356 | 5177631 | 5177356 | ID=Msa0972860-mRNA-1:exon:2216;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5178577 | 5178629 | 5178577 | ID=Msa0972860-mRNA-1:exon:2215;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5179019 | 5179541 | 5179019 | ID=Msa0972860-mRNA-1:exon:2214;Parent=Msa0972860-mRNA-1 |
| chr6_4 | exon | 5181101 | 5181786 | 5181101 | ID=Msa0972860-mRNA-1:exon:2213;Parent=Msa0972860-mRNA-1 |
| chr6_4 | five_prime_UTR | 5181755 | 5181786 | 5181755 | ID=Msa0972860-mRNA-1:five_prime_utr;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5181101 | 5181754 | 5181101 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5179019 | 5179541 | 5179019 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5178577 | 5178629 | 5178577 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5177356 | 5177631 | 5177356 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5177117 | 5177273 | 5177117 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5176656 | 5176970 | 5176656 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5175926 | 5175977 | 5175926 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| chr6_4 | CDS | 5175549 | 5175573 | 5175549 | ID=Msa0972860-mRNA-1:cds;Parent=Msa0972860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
