AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0743650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743650 MtrunA17_Chr5g0445491 95.825 503 8 3 1 490 1 503 0.0 964
Msa0743650 MtrunA17_Chr2g0294671 32.456 228 139 7 217 438 215 433 2.72e-26 111
Msa0743650 MtrunA17_Chr2g0294671 30.256 195 125 5 246 436 208 395 2.21e-17 84.7
Msa0743650 MtrunA17_Chr2g0294671 27.556 225 134 6 172 390 277 478 2.60e-17 84.3
Msa0743650 MtrunA17_Chr5g0428941 24.924 329 202 7 178 468 171 492 1.32e-25 110
Msa0743650 MtrunA17_Chr5g0428941 25.263 190 136 3 208 397 134 317 2.32e-11 65.9
Msa0743650 MtrunA17_Chr2g0311181 26.639 244 161 6 214 456 70 296 2.17e-25 106
Msa0743650 MtrunA17_Chr4g0043941 28.571 266 176 6 175 435 42 298 2.38e-24 103
Msa0743650 MtrunA17_Chr4g0043941 27.948 229 161 2 213 438 41 268 2.74e-19 89.0
Msa0743650 MtrunA17_Chr5g0417641 29.319 191 132 1 248 438 88 275 2.83e-21 94.4
Msa0743650 MtrunA17_Chr6g0448821 26.804 291 175 4 180 435 49 336 7.22e-21 94.4
Msa0743650 MtrunA17_Chr4g0034981 23.630 292 185 5 181 436 277 566 1.24e-19 92.0
Msa0743650 MtrunA17_Chr4g0034981 24.476 286 198 7 163 437 184 462 8.12e-13 70.9
Msa0743650 MtrunA17_Chr1g0212691 22.526 293 216 7 145 433 143 428 8.17e-18 86.3
Msa0743650 MtrunA17_Chr1g0212691 24.681 235 167 6 214 444 108 336 3.12e-15 78.2
Msa0743650 MtrunA17_Chr8g0391881 27.064 218 152 4 217 432 162 374 2.96e-17 83.6
Msa0743650 MtrunA17_Chr8g0391881 25.683 183 133 3 214 395 86 266 1.32e-13 72.4
Msa0743650 MtrunA17_Chr7g0250261 25.984 254 173 7 212 462 42 283 2.59e-16 79.3
Msa0743650 MtrunA17_Chr0c29g0494001 25.984 254 173 7 212 462 42 283 2.59e-16 79.3
Msa0743650 MtrunA17_Chr2g0304101 23.767 223 155 4 214 432 70 281 3.31e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743650 AT5G55580.1 61.753 502 164 6 6 489 4 495 0.0 577
Msa0743650 AT5G55580.2 73.950 357 89 1 133 489 37 389 0.0 554
Msa0743650 AT5G55580.3 57.357 401 143 6 6 388 4 394 1.96e-140 409
Msa0743650 AT2G21710.1 26.148 283 199 5 182 461 320 595 1.82e-26 113
Msa0743650 AT2G21710.1 23.256 387 271 11 93 468 127 498 1.98e-13 73.2
Msa0743650 AT4G02990.2 24.242 330 203 6 178 468 179 500 3.13e-24 106
Msa0743650 AT4G02990.1 24.242 330 203 6 178 468 179 500 3.13e-24 106
Msa0743650 AT4G38160.4 27.068 266 180 6 176 435 43 300 3.37e-23 100
Msa0743650 AT4G38160.4 29.741 232 155 6 213 438 41 270 4.54e-21 94.7
Msa0743650 AT4G38160.1 27.068 266 180 6 176 435 43 300 3.37e-23 100
Msa0743650 AT4G38160.1 29.741 232 155 6 213 438 41 270 4.54e-21 94.7
Msa0743650 AT4G38160.2 27.068 266 180 6 176 435 43 300 4.20e-23 100
Msa0743650 AT4G38160.2 29.741 232 155 6 213 438 41 270 5.59e-21 94.7
Msa0743650 AT4G38160.3 27.068 266 180 6 176 435 43 300 1.17e-22 100
Msa0743650 AT4G38160.3 29.741 232 155 6 213 438 41 270 1.18e-20 94.0
Msa0743650 AT1G78930.1 27.650 217 153 3 219 435 342 554 1.39e-22 101
Msa0743650 AT1G78930.1 28.485 165 110 3 207 368 397 556 2.26e-14 76.3
Msa0743650 AT2G03050.2 26.339 224 155 5 214 435 34 249 1.07e-20 92.4
Msa0743650 AT2G03050.1 26.339 224 155 5 214 435 33 248 1.09e-20 92.4
Msa0743650 AT2G44020.1 25.424 295 182 5 179 437 145 437 3.96e-20 93.6
Msa0743650 AT2G44020.1 25.957 235 152 8 207 438 83 298 8.88e-12 67.8
Msa0743650 AT2G21710.2 24.481 241 175 4 182 419 320 556 4.19e-20 94.0
Msa0743650 AT2G21710.2 23.256 387 271 11 93 468 127 498 3.86e-13 72.0
Msa0743650 AT4G14605.2 26.484 219 154 5 217 435 236 447 4.94e-20 93.2
Msa0743650 AT4G14605.2 26.222 225 137 6 172 390 262 463 4.47e-14 74.7
Msa0743650 AT4G14605.1 26.484 219 154 5 217 435 236 447 4.94e-20 93.2
Msa0743650 AT4G14605.1 26.222 225 137 6 172 390 262 463 4.47e-14 74.7
Msa0743650 AT2G34620.1 26.389 216 145 4 247 458 85 290 9.21e-20 90.1
Msa0743650 AT2G21710.3 24.268 239 174 4 182 417 320 554 1.45e-19 92.0
Msa0743650 AT2G21710.3 23.256 387 271 11 93 468 127 498 2.58e-13 72.8
Msa0743650 AT2G36000.2 27.200 250 158 8 214 457 74 305 6.04e-19 88.2
Msa0743650 AT2G36000.1 27.200 250 158 8 214 457 74 305 7.11e-19 88.2
Msa0743650 AT3G18870.1 25.591 254 131 8 217 462 69 272 1.46e-16 80.5

Find 98 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGCACCTTTGGAATTA+AGG 0.140140 5_1:+64131450 Msa0743650:CDS
AGCAATAATTTGCCCTATTT+TGG 0.169836 5_1:-64131689 None:intergenic
GACTCACGTTGCTTTCTTAA+TGG 0.188627 5_1:+64131648 Msa0743650:CDS
CATGTGGTACAAATTGTTTC+AGG 0.204396 5_1:-64133067 None:intergenic
CATCTTCACAATGCTCTCTT+TGG 0.219102 5_1:-64131905 None:intergenic
TGACTTCAATCTCTTGTCTT+TGG 0.225373 5_1:-64130584 None:intergenic
CGTTGCTTTCTTAATGGGCT+TGG 0.237557 5_1:+64131654 Msa0743650:CDS
GGATGCTATTCTCTGACTTT+TGG 0.242258 5_1:-64130952 None:intergenic
ACATGTGCCTCTCATAAATT+TGG 0.244120 5_1:-64131486 None:intergenic
TAAACTTAAGAGCCAACTTA+TGG 0.283678 5_1:+64132875 Msa0743650:three_prime_UTR
CTCCTTAGGAAATTTATTCT+TGG 0.307382 5_1:-64131979 None:intergenic
TCCAACGTATTGACATTTCA+TGG 0.312784 5_1:+64131842 Msa0743650:CDS
ATCTTCACAATGCTCTCTTT+GGG 0.327138 5_1:-64131904 None:intergenic
AGAATATTCATATTCATTCA+TGG 0.328307 5_1:+64129906 Msa0743650:exon
ACTAAACAAGCTCACCTTTC+AGG 0.329385 5_1:-64132759 None:intergenic
GCTAAGGTACATCGGGTATT+TGG 0.329609 5_1:-64132303 None:intergenic
CCAAGAGGAAATGGTCCTTT+TGG 0.331786 5_1:-64132386 None:intergenic
CTTGATTACTTAAGCACCTT+TGG 0.335021 5_1:+64131442 Msa0743650:CDS
TCGTCCTCGTCATAAGTTCT+TGG 0.344950 5_1:+64132346 Msa0743650:CDS
ACTCACGTTGCTTTCTTAAT+GGG 0.345489 5_1:+64131649 Msa0743650:CDS
GATGTACCTTAGCTTGTCTT+TGG 0.348758 5_1:+64132313 Msa0743650:CDS
GGCGTACCTAGTACCAAAAT+AGG 0.359195 5_1:+64131676 Msa0743650:CDS
TAGATTACTTGATGAGTCTT+GGG 0.360371 5_1:+64131548 Msa0743650:CDS
GTTGCTTTCTTAATGGGCTT+GGG 0.365837 5_1:+64131655 Msa0743650:CDS
GTTGTCTGAAGAGATTCTTT+TGG 0.368169 5_1:+64131399 Msa0743650:CDS
GCATGATTAGAGGAAGGAAT+TGG 0.374741 5_1:-64129976 None:intergenic
TTGAAGTCAAAGACAGTTGC+AGG 0.386479 5_1:+64130598 Msa0743650:CDS
CAATCAACTTGCACGAGTAC+TGG 0.402183 5_1:+64132559 Msa0743650:three_prime_UTR
AGAAGCAGAAGCATGATTAG+AGG 0.407915 5_1:-64129986 None:intergenic
TGATGATGAAGATGAAGAAA+TGG 0.419929 5_1:+64130131 Msa0743650:CDS
GAATTTGTGGTTGCCTCAAA+AGG 0.421558 5_1:-64131597 None:intergenic
ATAGATTACTTGATGAGTCT+TGG 0.425881 5_1:+64131547 Msa0743650:CDS
CTGCATTACAGTATTGATGA+TGG 0.426933 5_1:+64131949 Msa0743650:CDS
ACCGTGTATTCTAGAATTTG+TGG 0.436537 5_1:-64131610 None:intergenic
AGATATTTAATTGAGGAAGT+TGG 0.438021 5_1:+64131766 Msa0743650:CDS
AGAATGTTGAAAGGATTGTA+AGG 0.447642 5_1:-64129952 None:intergenic
GCAGGTGCTATCTCTGTCCT+TGG 0.454121 5_1:+64132214 Msa0743650:intron
CAAAGAGAGCATTGTGAAGA+TGG 0.456446 5_1:+64131906 Msa0743650:CDS
ACTAGAGATCCAAGAGGAAA+TGG 0.462060 5_1:-64132395 None:intergenic
TTTATCATTGCTGTTTCAGT+TGG 0.462519 5_1:+64132736 Msa0743650:three_prime_UTR
TAGACAACAAGAAAAGGAAA+AGG 0.464265 5_1:+64130890 Msa0743650:CDS
CCAAAAGGACCATTTCCTCT+TGG 0.467379 5_1:+64132386 Msa0743650:CDS
TGACAAAAGGATTCATCAGT+TGG 0.470816 5_1:-64132419 None:intergenic
TTCGATGGAGAAAAGATATC+CGG 0.473213 5_1:+64131375 Msa0743650:CDS
AATTGTCCATGTATCATGTA+TGG 0.474000 5_1:-64133035 None:intergenic
TATGACGAGGACGAATTCTC+TGG 0.474277 5_1:-64132337 None:intergenic
TCCAGCCCATCGTTGACAAA+AGG 0.483266 5_1:-64132432 None:intergenic
AATTGAGGAAGTTGGCATCA+AGG 0.486070 5_1:+64131774 Msa0743650:CDS
TCAATTAAATATCTTACTGT+TGG 0.487640 5_1:-64131757 None:intergenic
GATGTTTCTTAACAAAGAGT+TGG 0.488384 5_1:+64131876 Msa0743650:CDS
TACAGATAGACAACAAGAAA+AGG 0.490910 5_1:+64130884 Msa0743650:intron
TTCCAAGAATAAATTTCCTA+AGG 0.495242 5_1:+64131977 Msa0743650:CDS
ATTATACAGTTCATCAATGA+AGG 0.506760 5_1:-64132917 None:intergenic
AAAGCCGAAGTATTTGTACT+TGG 0.508230 5_1:+64132247 Msa0743650:CDS
GCGTACCTAGTACCAAAATA+GGG 0.510052 5_1:+64131677 Msa0743650:CDS
AACAGTAAGATATTTAATTG+AGG 0.516231 5_1:+64131759 Msa0743650:CDS
TTGTGATTCCTTAATTCCAA+AGG 0.518718 5_1:-64131458 None:intergenic
ACCAATCGAAAATCACCCTA+TGG 0.522397 5_1:+64130084 Msa0743650:CDS
TCTTTGGCATTAAGATCAGT+AGG 0.525087 5_1:-64130568 None:intergenic
ATGTGGTACAAATTGTTTCA+GGG 0.525874 5_1:-64133066 None:intergenic
AATAAATGTATGTTCTGCAC+AGG 0.526298 5_1:+64131519 Msa0743650:CDS
CGGCTTTAGATTAGCTTCCA+AGG 0.526666 5_1:-64132231 None:intergenic
ATAAATTTCCTAAGGAGCAT+AGG 0.526985 5_1:+64131985 Msa0743650:CDS
AAATGAGAGAATCCATAAGT+TGG 0.528482 5_1:-64132887 None:intergenic
TTTACCAAGTACAAATACTT+CGG 0.532246 5_1:-64132251 None:intergenic
AAGACAAGCTAAGGTACATC+GGG 0.535136 5_1:-64132310 None:intergenic
GCTGTTTCAGTTGGCCTGAA+AGG 0.536391 5_1:+64132745 Msa0743650:three_prime_UTR
GTAGTTTCGTAGAAATTCGA+TGG 0.537172 5_1:+64131360 Msa0743650:intron
GTACATCGGGTATTTGGTCA+AGG 0.541793 5_1:-64132297 None:intergenic
GGAATTGGAAGAATGTTGAA+AGG 0.542797 5_1:-64129961 None:intergenic
TCCCTAAAGAAAGCTCCAAA+AGG 0.551170 5_1:+64132371 Msa0743650:CDS
TCTGGTCCAAAGACAAGCTA+AGG 0.551617 5_1:-64132319 None:intergenic
AGACAACAAGAAAAGGAAAA+GGG 0.551962 5_1:+64130891 Msa0743650:CDS
TTGTGACCATACATGATACA+TGG 0.557384 5_1:+64133029 Msa0743650:three_prime_UTR
ATACGTTGGACAAGAATTTG+AGG 0.570242 5_1:-64131829 None:intergenic
CACGAGTACTGGAAAATGAT+CGG 0.571795 5_1:+64132570 Msa0743650:three_prime_UTR
AAATATTGTGCATATAGAGT+AGG 0.577021 5_1:-64132652 None:intergenic
ATGTATGTTCTGCACAGGAA+AGG 0.582720 5_1:+64131524 Msa0743650:CDS
AGATTACTTGATGAGTCTTG+GGG 0.589186 5_1:+64131549 Msa0743650:CDS
AAAGACAAGCTAAGGTACAT+CGG 0.593674 5_1:-64132311 None:intergenic
TTTATTTCAACTCGTACATG+TGG 0.598013 5_1:-64133083 None:intergenic
AGAATCTCTTCAGACAACTC+CGG 0.598051 5_1:-64131394 None:intergenic
GTGCTTAAGTAATCAAGAAG+TGG 0.598694 5_1:-64131436 None:intergenic
GCAGAAGCATGATTAGAGGA+AGG 0.598929 5_1:-64129982 None:intergenic
TCTTCATCATCAGAGTCATA+CGG 0.598960 5_1:-64130120 None:intergenic
CATCAGAGTCATACGGAGAG+AGG 0.602302 5_1:-64130113 None:intergenic
ATACTGTAATGCAGAAGCTG+AGG 0.609678 5_1:-64131940 None:intergenic
ACAAGAAAATAACAGTGCAA+AGG 0.615006 5_1:+64130977 Msa0743650:CDS
TACTGTAATGCAGAAGCTGA+GGG 0.620289 5_1:-64131939 None:intergenic
TCCATGAAATGTCAATACGT+TGG 0.626915 5_1:-64131843 None:intergenic
GGTAAATGAGCTTCACAATG+AGG 0.633064 5_1:+64132268 Msa0743650:CDS
AATTCATCCAAATTTATGAG+AGG 0.636805 5_1:+64131479 Msa0743650:CDS
GAATGTTGAAAGGATTGTAA+GGG 0.639767 5_1:-64129951 None:intergenic
ACCACAAATTCTAGAATACA+CGG 0.657650 5_1:+64131609 Msa0743650:CDS
TATAGAGTAGGCACATCACA+TGG 0.663477 5_1:-64132640 None:intergenic
GTTGGAACTAGAGATCCAAG+AGG 0.745944 5_1:-64132401 None:intergenic
GAAACCAAGAACTTATGACG+AGG 0.752928 5_1:-64132350 None:intergenic
ACAAATTCTAGAATACACGG+TGG 0.791192 5_1:+64131612 Msa0743650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTACTAAAATTAAAAAT+TGG - chr5_1:64130286-64130305 None:intergenic 10.0%
!! AAAATACTAAAATTTCATCA+TGG - chr5_1:64130238-64130257 None:intergenic 15.0%
!! ATATATTTGAATTGAAGTAA+TGG + chr5_1:64130366-64130385 Msa0743650:intron 15.0%
!! TATATTTGAATTGAAGTAAT+GGG + chr5_1:64130367-64130386 Msa0743650:intron 15.0%
!! TAGTAGTATATTATGTTATT+AGG + chr5_1:64131069-64131088 Msa0743650:intron 15.0%
!! CATTGTAATTATATGTATTT+AGG + chr5_1:64131253-64131272 Msa0743650:intron 15.0%
!!! ATGGATTAAGATAATTTTCA+GGG + chr5_1:64129877-64129896 Msa0743650:five_prime_UTR 20.0%
!! AGAATATTCATATTCATTCA+TGG + chr5_1:64129906-64129925 Msa0743650:exon 20.0%
!!! TTTTAGTAGAAAATTTGAAG+TGG + chr5_1:64130294-64130313 Msa0743650:intron 20.0%
!!! TTTAGTAGAAAATTTGAAGT+GGG + chr5_1:64130295-64130314 Msa0743650:intron 20.0%
!!! CTTGGTAGTTTTAATTTTAA+GGG + chr5_1:64130642-64130661 Msa0743650:intron 20.0%
!!! TTGGTAGTTTTAATTTTAAG+GGG + chr5_1:64130643-64130662 Msa0743650:intron 20.0%
!! CATAATATACTACTAATAAG+AGG - chr5_1:64131064-64131083 None:intergenic 20.0%
!! TCAATTAAATATCTTACTGT+TGG - chr5_1:64131760-64131779 None:intergenic 20.0%
!! AACAGTAAGATATTTAATTG+AGG + chr5_1:64131759-64131778 Msa0743650:CDS 20.0%
!!! GAATATACAACTTTTAATGA+AGG - chr5_1:64132964-64132983 None:intergenic 20.0%
!!! CATGGATTAAGATAATTTTC+AGG + chr5_1:64129876-64129895 Msa0743650:five_prime_UTR 25.0%
! GTTTGAATTGGAGAAATAAA+TGG + chr5_1:64130448-64130467 Msa0743650:intron 25.0%
!! ATGTTTGAAAAAGTTTTGCT+TGG + chr5_1:64130624-64130643 Msa0743650:intron 25.0%
!!! GCTTGGTAGTTTTAATTTTA+AGG + chr5_1:64130641-64130660 Msa0743650:intron 25.0%
!! ATAAAGTGTCTATGCTATAT+AGG - chr5_1:64130678-64130697 None:intergenic 25.0%
! CTTTATATTGTAGGTGTATT+TGG + chr5_1:64130692-64130711 Msa0743650:intron 25.0%
! AAAGCAATTATAAGATTCCA+TGG - chr5_1:64131326-64131345 None:intergenic 25.0%
! AATTCATCCAAATTTATGAG+AGG + chr5_1:64131479-64131498 Msa0743650:CDS 25.0%
!! ATATAAGAAGAATCCTTTTG+AGG + chr5_1:64131584-64131603 Msa0743650:CDS 25.0%
! AGATATTTAATTGAGGAAGT+TGG + chr5_1:64131766-64131785 Msa0743650:CDS 25.0%
! TTCCAAGAATAAATTTCCTA+AGG + chr5_1:64131977-64131996 Msa0743650:CDS 25.0%
! TTTACCAAGTACAAATACTT+CGG - chr5_1:64132254-64132273 None:intergenic 25.0%
! AAATATTGTGCATATAGAGT+AGG - chr5_1:64132655-64132674 None:intergenic 25.0%
! ATTATACAGTTCATCAATGA+AGG - chr5_1:64132920-64132939 None:intergenic 25.0%
GAATGTTGAAAGGATTGTAA+GGG - chr5_1:64129954-64129973 None:intergenic 30.0%
AGAATGTTGAAAGGATTGTA+AGG - chr5_1:64129955-64129974 None:intergenic 30.0%
!!! CGATTGGTTTTGAGAATTTT+GGG - chr5_1:64130072-64130091 None:intergenic 30.0%
!!! TCGATTGGTTTTGAGAATTT+TGG - chr5_1:64130073-64130092 None:intergenic 30.0%
! TGATGATGAAGATGAAGAAA+TGG + chr5_1:64130131-64130150 Msa0743650:CDS 30.0%
TTGTGAAGTTGTGTTTGAAT+TGG + chr5_1:64130436-64130455 Msa0743650:intron 30.0%
ATTGAACTTGTGTTGTATCT+AGG + chr5_1:64130531-64130550 Msa0743650:intron 30.0%
GCATAGACACTTTATATTGT+AGG + chr5_1:64130683-64130702 Msa0743650:intron 30.0%
TACAGATAGACAACAAGAAA+AGG + chr5_1:64130884-64130903 Msa0743650:intron 30.0%
TAGACAACAAGAAAAGGAAA+AGG + chr5_1:64130890-64130909 Msa0743650:CDS 30.0%
AGACAACAAGAAAAGGAAAA+GGG + chr5_1:64130891-64130910 Msa0743650:CDS 30.0%
!!! TGCACTGTTATTTTCTTGTA+AGG - chr5_1:64130976-64130995 None:intergenic 30.0%
ACAAGAAAATAACAGTGCAA+AGG + chr5_1:64130977-64130996 Msa0743650:CDS 30.0%
!! AACAGTGCAAAGGTATTAAA+TGG + chr5_1:64130987-64131006 Msa0743650:intron 30.0%
ACTAATAAGAGGTCTAACAA+TGG - chr5_1:64131053-64131072 None:intergenic 30.0%
!!! TTTTGGGACTGAATATTGAT+TGG + chr5_1:64131167-64131186 Msa0743650:intron 30.0%
! TTTGGGACTGAATATTGATT+GGG + chr5_1:64131168-64131187 Msa0743650:intron 30.0%
TTTCAAGAATTTCGAGAGTT+TGG - chr5_1:64131199-64131218 None:intergenic 30.0%
AAACTCTCGAAATTCTTGAA+AGG + chr5_1:64131198-64131217 Msa0743650:intron 30.0%
AACTCTCGAAATTCTTGAAA+GGG + chr5_1:64131199-64131218 Msa0743650:intron 30.0%
! AGATTCTTTTGGATGAGAAA+TGG + chr5_1:64131410-64131429 Msa0743650:CDS 30.0%
TTGTGATTCCTTAATTCCAA+AGG - chr5_1:64131461-64131480 None:intergenic 30.0%
AATAAATGTATGTTCTGCAC+AGG + chr5_1:64131519-64131538 Msa0743650:CDS 30.0%
ATAGATTACTTGATGAGTCT+TGG + chr5_1:64131547-64131566 Msa0743650:CDS 30.0%
TAGATTACTTGATGAGTCTT+GGG + chr5_1:64131548-64131567 Msa0743650:CDS 30.0%
!! ACCACAAATTCTAGAATACA+CGG + chr5_1:64131609-64131628 Msa0743650:CDS 30.0%
!! AGCAATAATTTGCCCTATTT+TGG - chr5_1:64131692-64131711 None:intergenic 30.0%
CTCAACACTGTAAGAAAAAA+GGG - chr5_1:64131725-64131744 None:intergenic 30.0%
TCTCAACACTGTAAGAAAAA+AGG - chr5_1:64131726-64131745 None:intergenic 30.0%
GATGTTTCTTAACAAAGAGT+TGG + chr5_1:64131876-64131895 Msa0743650:CDS 30.0%
CTCCTTAGGAAATTTATTCT+TGG - chr5_1:64131982-64132001 None:intergenic 30.0%
! ATAAATTTCCTAAGGAGCAT+AGG + chr5_1:64131985-64132004 Msa0743650:CDS 30.0%
ATGCAAAAATAACCTGTGTA+AGG - chr5_1:64132047-64132066 None:intergenic 30.0%
AAGGAAACGATGTTATGTAA+TGG + chr5_1:64132113-64132132 Msa0743650:intron 30.0%
CGTTATAAGGATCAAACAAA+AGG - chr5_1:64132156-64132175 None:intergenic 30.0%
!! TTTATCATTGCTGTTTCAGT+TGG + chr5_1:64132736-64132755 Msa0743650:three_prime_UTR 30.0%
TAAACTTAAGAGCCAACTTA+TGG + chr5_1:64132875-64132894 Msa0743650:three_prime_UTR 30.0%
AAATGAGAGAATCCATAAGT+TGG - chr5_1:64132890-64132909 None:intergenic 30.0%
AATTGTCCATGTATCATGTA+TGG - chr5_1:64133038-64133057 None:intergenic 30.0%
ATGTGGTACAAATTGTTTCA+GGG - chr5_1:64133069-64133088 None:intergenic 30.0%
TTTATTTCAACTCGTACATG+TGG - chr5_1:64133086-64133105 None:intergenic 30.0%
GGAATTGGAAGAATGTTGAA+AGG - chr5_1:64129964-64129983 None:intergenic 35.0%
!!! GGTTTTGAGAATTTTGGGAT+TGG - chr5_1:64130067-64130086 None:intergenic 35.0%
TCTTCATCATCAGAGTCATA+CGG - chr5_1:64130123-64130142 None:intergenic 35.0%
AACTTGTGTTGTATCTAGGA+CGG + chr5_1:64130535-64130554 Msa0743650:intron 35.0%
TCTTTGGCATTAAGATCAGT+AGG - chr5_1:64130571-64130590 None:intergenic 35.0%
TGACTTCAATCTCTTGTCTT+TGG - chr5_1:64130587-64130606 None:intergenic 35.0%
ACTAATTCACACACTGACAA+TGG - chr5_1:64130822-64130841 None:intergenic 35.0%
! GGTGTGAGATCTTTTAACAA+TGG + chr5_1:64130912-64130931 Msa0743650:CDS 35.0%
! GATGCTATTCTCTGACTTTT+GGG - chr5_1:64130954-64130973 None:intergenic 35.0%
TTATTGAATGCCCAAAAGTC+AGG + chr5_1:64131135-64131154 Msa0743650:intron 35.0%
TATTGAATGCCCAAAAGTCA+GGG + chr5_1:64131136-64131155 Msa0743650:intron 35.0%
! ATAAAATGCCCCTGACTTTT+GGG - chr5_1:64131148-64131167 None:intergenic 35.0%
! AATAAAATGCCCCTGACTTT+TGG - chr5_1:64131149-64131168 None:intergenic 35.0%
!!! AAGTCAGGGGCATTTTATTT+TGG + chr5_1:64131150-64131169 Msa0743650:intron 35.0%
!!! AGTCAGGGGCATTTTATTTT+GGG + chr5_1:64131151-64131170 Msa0743650:intron 35.0%
GTAGTTTCGTAGAAATTCGA+TGG + chr5_1:64131360-64131379 Msa0743650:intron 35.0%
TTCGATGGAGAAAAGATATC+CGG + chr5_1:64131375-64131394 Msa0743650:CDS 35.0%
! GTTGTCTGAAGAGATTCTTT+TGG + chr5_1:64131399-64131418 Msa0743650:CDS 35.0%
GTGCTTAAGTAATCAAGAAG+TGG - chr5_1:64131439-64131458 None:intergenic 35.0%
CTTGATTACTTAAGCACCTT+TGG + chr5_1:64131442-64131461 Msa0743650:CDS 35.0%
!! CTTAAGCACCTTTGGAATTA+AGG + chr5_1:64131450-64131469 Msa0743650:CDS 35.0%
ACATGTGCCTCTCATAAATT+TGG - chr5_1:64131489-64131508 None:intergenic 35.0%
AGATTACTTGATGAGTCTTG+GGG + chr5_1:64131549-64131568 Msa0743650:CDS 35.0%
!! ACCGTGTATTCTAGAATTTG+TGG - chr5_1:64131613-64131632 None:intergenic 35.0%
!! ACAAATTCTAGAATACACGG+TGG + chr5_1:64131612-64131631 Msa0743650:CDS 35.0%
! ACTCACGTTGCTTTCTTAAT+GGG + chr5_1:64131649-64131668 Msa0743650:CDS 35.0%
!!! ATTTGCCCTATTTTGGTACT+AGG - chr5_1:64131685-64131704 None:intergenic 35.0%
ACACTGTAAGAAAAAAGGGA+CGG - chr5_1:64131721-64131740 None:intergenic 35.0%
TGGCATCAAGGAAAAAGATT+TGG + chr5_1:64131786-64131805 Msa0743650:CDS 35.0%
GGCATCAAGGAAAAAGATTT+GGG + chr5_1:64131787-64131806 Msa0743650:CDS 35.0%
ATACGTTGGACAAGAATTTG+AGG - chr5_1:64131832-64131851 None:intergenic 35.0%
! TCCAACGTATTGACATTTCA+TGG + chr5_1:64131842-64131861 Msa0743650:CDS 35.0%
TCCATGAAATGTCAATACGT+TGG - chr5_1:64131846-64131865 None:intergenic 35.0%
ATCTTCACAATGCTCTCTTT+GGG - chr5_1:64131907-64131926 None:intergenic 35.0%
!! CTGCATTACAGTATTGATGA+TGG + chr5_1:64131949-64131968 Msa0743650:CDS 35.0%
! TTTTCATTCCTATGCTCCTT+AGG - chr5_1:64131996-64132015 None:intergenic 35.0%
GAGCATAGGAATGAAAAATG+CGG + chr5_1:64131999-64132018 Msa0743650:CDS 35.0%
!!! AATTTTGACTAGCCTTACAC+AGG + chr5_1:64132032-64132051 Msa0743650:CDS 35.0%
TTATTCTCCCTTTGCACAAA+AGG + chr5_1:64132081-64132100 Msa0743650:intron 35.0%
TAACTGAGTGTCACGTTATA+AGG - chr5_1:64132169-64132188 None:intergenic 35.0%
! AAAGCCGAAGTATTTGTACT+TGG + chr5_1:64132247-64132266 Msa0743650:CDS 35.0%
AAAGACAAGCTAAGGTACAT+CGG - chr5_1:64132314-64132333 None:intergenic 35.0%
!!! TCCTTTTGGAGCTTTCTTTA+GGG - chr5_1:64132375-64132394 None:intergenic 35.0%
TGACAAAAGGATTCATCAGT+TGG - chr5_1:64132422-64132441 None:intergenic 35.0%
! ATGAATCCTTTTGTCAACGA+TGG + chr5_1:64132426-64132445 Msa0743650:CDS 35.0%
! TGAATCCTTTTGTCAACGAT+GGG + chr5_1:64132427-64132446 Msa0743650:CDS 35.0%
! ATTAATCCCTGTCTTATTGC+AGG + chr5_1:64132816-64132835 Msa0743650:intron 35.0%
GTCACAAGTGTAACAAAAAG+TGG - chr5_1:64133016-64133035 None:intergenic 35.0%
TTGTGACCATACATGATACA+TGG + chr5_1:64133029-64133048 Msa0743650:three_prime_UTR 35.0%
CATGTGGTACAAATTGTTTC+AGG - chr5_1:64133070-64133089 None:intergenic 35.0%
GCATGATTAGAGGAAGGAAT+TGG - chr5_1:64129979-64129998 None:intergenic 40.0%
! AGAAGCAGAAGCATGATTAG+AGG - chr5_1:64129989-64130008 None:intergenic 40.0%
ACCAATCGAAAATCACCCTA+TGG + chr5_1:64130084-64130103 Msa0743650:CDS 40.0%
! TCCATAGGGTGATTTTCGAT+TGG - chr5_1:64130088-64130107 None:intergenic 40.0%
! GGAGAGAGGAATTTTCCATA+GGG - chr5_1:64130102-64130121 None:intergenic 40.0%
TTGAAGTCAAAGACAGTTGC+AGG + chr5_1:64130598-64130617 Msa0743650:CDS 40.0%
TGTCAGACACTAACACGTTA+TGG - chr5_1:64130721-64130740 None:intergenic 40.0%
TTGAATGTAACCACACGAGT+CGG - chr5_1:64130749-64130768 None:intergenic 40.0%
! GGATGCTATTCTCTGACTTT+TGG - chr5_1:64130955-64130974 None:intergenic 40.0%
GCTGCAGTTATTGTGTGATT+AGG + chr5_1:64131091-64131110 Msa0743650:intron 40.0%
TTATTGTGTGATTAGGCAGC+AGG + chr5_1:64131098-64131117 Msa0743650:intron 40.0%
ATTGAATGCCCAAAAGTCAG+GGG + chr5_1:64131137-64131156 Msa0743650:intron 40.0%
!!! ACCCACAACTCGAGTTTTTT+GGG + chr5_1:64131226-64131245 Msa0743650:intron 40.0%
AGAATCTCTTCAGACAACTC+CGG - chr5_1:64131397-64131416 None:intergenic 40.0%
ATGTATGTTCTGCACAGGAA+AGG + chr5_1:64131524-64131543 Msa0743650:CDS 40.0%
GAATTTGTGGTTGCCTCAAA+AGG - chr5_1:64131600-64131619 None:intergenic 40.0%
! GACTCACGTTGCTTTCTTAA+TGG + chr5_1:64131648-64131667 Msa0743650:CDS 40.0%
!! GTTGCTTTCTTAATGGGCTT+GGG + chr5_1:64131655-64131674 Msa0743650:CDS 40.0%
GCGTACCTAGTACCAAAATA+GGG + chr5_1:64131677-64131696 Msa0743650:CDS 40.0%
AATTGAGGAAGTTGGCATCA+AGG + chr5_1:64131774-64131793 Msa0743650:CDS 40.0%
CATCTTCACAATGCTCTCTT+TGG - chr5_1:64131908-64131927 None:intergenic 40.0%
!! CAAAGAGAGCATTGTGAAGA+TGG + chr5_1:64131906-64131925 Msa0743650:CDS 40.0%
TACTGTAATGCAGAAGCTGA+GGG - chr5_1:64131942-64131961 None:intergenic 40.0%
ATACTGTAATGCAGAAGCTG+AGG - chr5_1:64131943-64131962 None:intergenic 40.0%
! CCTTGTTCCTTTTGTGCAAA+GGG - chr5_1:64132091-64132110 None:intergenic 40.0%
! TCCTTGTTCCTTTTGTGCAA+AGG - chr5_1:64132092-64132111 None:intergenic 40.0%
GCACAAAAGGAACAAGGAAA+AGG + chr5_1:64132094-64132113 Msa0743650:intron 40.0%
GGTAAATGAGCTTCACAATG+AGG + chr5_1:64132268-64132287 Msa0743650:CDS 40.0%
AAGACAAGCTAAGGTACATC+GGG - chr5_1:64132313-64132332 None:intergenic 40.0%
!! GATGTACCTTAGCTTGTCTT+TGG + chr5_1:64132313-64132332 Msa0743650:CDS 40.0%
GAAACCAAGAACTTATGACG+AGG - chr5_1:64132353-64132372 None:intergenic 40.0%
TCCCTAAAGAAAGCTCCAAA+AGG + chr5_1:64132371-64132390 Msa0743650:CDS 40.0%
!!! GTCCTTTTGGAGCTTTCTTT+AGG - chr5_1:64132376-64132395 None:intergenic 40.0%
ACTAGAGATCCAAGAGGAAA+TGG - chr5_1:64132398-64132417 None:intergenic 40.0%
!! CACGAGTACTGGAAAATGAT+CGG + chr5_1:64132570-64132589 Msa0743650:three_prime_UTR 40.0%
TATAGAGTAGGCACATCACA+TGG - chr5_1:64132643-64132662 None:intergenic 40.0%
ACTAAACAAGCTCACCTTTC+AGG - chr5_1:64132762-64132781 None:intergenic 40.0%
! GCAGAAGCATGATTAGAGGA+AGG - chr5_1:64129985-64130004 None:intergenic 45.0%
! CGGAGAGAGGAATTTTCCAT+AGG - chr5_1:64130103-64130122 None:intergenic 45.0%
!!! GACCCACAACTCGAGTTTTT+TGG + chr5_1:64131225-64131244 Msa0743650:intron 45.0%
! CCCCAAAAAACTCGAGTTGT+GGG - chr5_1:64131230-64131249 None:intergenic 45.0%
!!! CCCACAACTCGAGTTTTTTG+GGG + chr5_1:64131227-64131246 Msa0743650:intron 45.0%
! TCCCCAAAAAACTCGAGTTG+TGG - chr5_1:64131231-64131250 None:intergenic 45.0%
GCAGCCAATTAATGTACCTG+TGG + chr5_1:64131298-64131317 Msa0743650:intron 45.0%
GGCACCACAGGTACATTAAT+TGG - chr5_1:64131305-64131324 None:intergenic 45.0%
! TTAATGTACCTGTGGTGCCA+TGG + chr5_1:64131306-64131325 Msa0743650:intron 45.0%
ATAAGATTCCATGGCACCAC+AGG - chr5_1:64131317-64131336 None:intergenic 45.0%
!! CGTTGCTTTCTTAATGGGCT+TGG + chr5_1:64131654-64131673 Msa0743650:CDS 45.0%
GGCGTACCTAGTACCAAAAT+AGG + chr5_1:64131676-64131695 Msa0743650:CDS 45.0%
CCCTTTGCACAAAAGGAACA+AGG + chr5_1:64132088-64132107 Msa0743650:intron 45.0%
!! CGGCTTTAGATTAGCTTCCA+AGG - chr5_1:64132234-64132253 None:intergenic 45.0%
GTACATCGGGTATTTGGTCA+AGG - chr5_1:64132300-64132319 None:intergenic 45.0%
GCTAAGGTACATCGGGTATT+TGG - chr5_1:64132306-64132325 None:intergenic 45.0%
TCTGGTCCAAAGACAAGCTA+AGG - chr5_1:64132322-64132341 None:intergenic 45.0%
TATGACGAGGACGAATTCTC+TGG - chr5_1:64132340-64132359 None:intergenic 45.0%
TCGTCCTCGTCATAAGTTCT+TGG + chr5_1:64132346-64132365 Msa0743650:CDS 45.0%
! CCAAGAGGAAATGGTCCTTT+TGG - chr5_1:64132389-64132408 None:intergenic 45.0%
CCAAAAGGACCATTTCCTCT+TGG + chr5_1:64132386-64132405 Msa0743650:CDS 45.0%
GTTGGAACTAGAGATCCAAG+AGG - chr5_1:64132404-64132423 None:intergenic 45.0%
CAATCAACTTGCACGAGTAC+TGG + chr5_1:64132559-64132578 Msa0743650:three_prime_UTR 45.0%
CCACAACCTGCAATAAGACA+GGG - chr5_1:64132825-64132844 None:intergenic 45.0%
ACCACAACCTGCAATAAGAC+AGG - chr5_1:64132826-64132845 None:intergenic 45.0%
CATCAGAGTCATACGGAGAG+AGG - chr5_1:64130116-64130135 None:intergenic 50.0%
CTGCAGGCACAGTAGTCAAT+AGG - chr5_1:64132198-64132217 None:intergenic 50.0%
! CTATTGACTACTGTGCCTGC+AGG + chr5_1:64132196-64132215 Msa0743650:intron 50.0%
! TCCTTTTGTCAACGATGGGC+TGG + chr5_1:64132431-64132450 Msa0743650:CDS 50.0%
TCCAGCCCATCGTTGACAAA+AGG - chr5_1:64132435-64132454 None:intergenic 50.0%
! GCTGTTTCAGTTGGCCTGAA+AGG + chr5_1:64132745-64132764 Msa0743650:three_prime_UTR 50.0%
! CCCTGTCTTATTGCAGGTTG+TGG + chr5_1:64132822-64132841 Msa0743650:intron 50.0%
!! TGACACAACACCGACTCGTG+TGG + chr5_1:64130736-64130755 Msa0743650:intron 55.0%
AGGACAGAGATAGCACCTGC+AGG - chr5_1:64132214-64132233 None:intergenic 55.0%
! GCAGGTGCTATCTCTGTCCT+TGG + chr5_1:64132214-64132233 Msa0743650:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64129874 64133114 64129874 ID=Msa0743650;Name=Msa0743650
chr5_1 mRNA 64129874 64133114 64129874 ID=Msa0743650-mRNA-1;Parent=Msa0743650;Name=Msa0743650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|0.8|0.83|6|508|490
chr5_1 exon 64129874 64130212 64129874 ID=Msa0743650-mRNA-1:exon:18937;Parent=Msa0743650-mRNA-1
chr5_1 exon 64130553 64130619 64130553 ID=Msa0743650-mRNA-1:exon:18938;Parent=Msa0743650-mRNA-1
chr5_1 exon 64130889 64130998 64130889 ID=Msa0743650-mRNA-1:exon:18939;Parent=Msa0743650-mRNA-1
chr5_1 exon 64131364 64132053 64131364 ID=Msa0743650-mRNA-1:exon:18940;Parent=Msa0743650-mRNA-1
chr5_1 exon 64132218 64132766 64132218 ID=Msa0743650-mRNA-1:exon:18941;Parent=Msa0743650-mRNA-1
chr5_1 exon 64132838 64133114 64132838 ID=Msa0743650-mRNA-1:exon:18942;Parent=Msa0743650-mRNA-1
chr5_1 five_prime_UTR 64129874 64129924 64129874 ID=Msa0743650-mRNA-1:five_prime_utr;Parent=Msa0743650-mRNA-1
chr5_1 CDS 64129925 64130212 64129925 ID=Msa0743650-mRNA-1:cds;Parent=Msa0743650-mRNA-1
chr5_1 CDS 64130553 64130619 64130553 ID=Msa0743650-mRNA-1:cds;Parent=Msa0743650-mRNA-1
chr5_1 CDS 64130889 64130998 64130889 ID=Msa0743650-mRNA-1:cds;Parent=Msa0743650-mRNA-1
chr5_1 CDS 64131364 64132053 64131364 ID=Msa0743650-mRNA-1:cds;Parent=Msa0743650-mRNA-1
chr5_1 CDS 64132218 64132535 64132218 ID=Msa0743650-mRNA-1:cds;Parent=Msa0743650-mRNA-1
chr5_1 three_prime_UTR 64132536 64132766 64132536 ID=Msa0743650-mRNA-1:three_prime_utr;Parent=Msa0743650-mRNA-1
chr5_1 three_prime_UTR 64132838 64133114 64132838 ID=Msa0743650-mRNA-1:three_prime_utr;Parent=Msa0743650-mRNA-1
Gene Sequence

>Msa0743650

ATGGCTACTACATTTTTATCACTTTACCCTTACAATCCTTTCAACATTCTTCCAATTCCTTCCTCTAATCATGCTTCTGCTTCTTCTTCTTCTTCTTCATTTCTCAAACGAAGAAAATTCACTGTTCTTTCTGCTCATTCCAATCCCAAAATTCTCAAAACCAATCGAAAATCACCCTATGGAAAATTCCTCTCTCCGTATGACTCTGATGATGAAGATGAAGAAATGGACTTTGAAGACGATGAAGATGAAGATGAAGATGAAGATGATGAAGATGATGATGATGATGACGGATTTGCTGAGCCTACTGATCTTAATGCCAAAGACAAGAGATTGAAGTCAAAGACAGTTGCAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTTTTAACAATGGACAGAGCAAAAGATTGCCCAAAAGTCAGAGAATAGCATCCTTACAAGAAAATAACAGTGCAAAGTTTCGTAGAAATTCGATGGAGAAAAGATATCCGGAGTTGTCTGAAGAGATTCTTTTGGATGAGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTCATCCAAATTTATGAGAGGCACATGTCGTCATTTCAAATAAATGTATGTTCTGCACAGGAAAGGATAGATTACTTGATGAGTCTTGGGGTTAAACATAAAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTAGAATACACGGTGGAGAACAATTTGAAGACTCACGTTGCTTTCTTAATGGGCTTGGGCGTACCTAGTACCAAAATAGGGCAAATTATTGCTTCTACTCCGTCCCTTTTTTCTTACAGTGTTGAGAAATCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTGATGTTTCTTAACAAAGAGTTGGATGCACCCAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTGCATTACAGTATTGATGATGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCGGACATCTTGAAAATTTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAAGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAGCTTCACAATGAGGTGCAAACCTTGACCAAATACCCGATGTACCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCATAAGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAACGATGGGCTGGAACTACTCTTGATGAATATGCTGCATTTCGACAGAGATTATTGCTCAAAAAACTTGCTGAGAAATATGACAGAAAAATGTGA

Protein sequence

>Msa0743650

MATTFLSLYPYNPFNILPIPSSNHASASSSSSSFLKRRKFTVLSAHSNPKILKTNRKSPYGKFLSPYDSDDEDEEMDFEDDEDEDEDEDDEDDDDDDGFAEPTDLNAKDKRLKSKTVADRQQEKEKGVRSFNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKRYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAFRQRLLLKKLAEKYDRKM*