AlfalfaGEDB | Msa1355950

M. sativa cultivar zhongmu-4 / Msa1355950

KEGG: K05387
GO: GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701
PFAM: PF01094.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355950	XP_003603256.1	83.708	356	29	2	3	329	4	359	0.0	596

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355950	sp\|Q9SHV1\|GLR22_ARATH	46.749	323	134	6	27	321	22	334	4.42e-88	286

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355950	G7J966	83.708	356	29	2	3	329	4	359	0.0	596

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa1355950	0.820227	7.667398e-53	-8.615850e-47
Msa0008850	Msa1355950	0.824168	9.340008e-54	-8.615850e-47
Msa0011720	Msa1355950	0.833404	5.438145e-56	-8.615850e-47
Msa0044710	Msa1355950	0.803787	2.950303e-49	-8.615850e-47
Msa0047470	Msa1355950	0.810850	9.388923e-51	-8.615850e-47
Msa0047940	Msa1355950	0.812294	4.557369e-51	-8.615850e-47
Msa0050720	Msa1355950	0.815688	8.131742e-52	-8.615850e-47
Msa0050770	Msa1355950	0.808890	2.480174e-50	-8.615850e-47
Msa0055280	Msa1355950	0.831973	1.231886e-55	-8.615850e-47
Msa0060600	Msa1355950	0.827638	1.400565e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355950	MtrunA17_Chr3g0136621	83.708	356	29	2	3	329	4	359	0.0	596
Msa1355950	MtrunA17_Chr3g0136611	83.380	355	31	1	3	329	2	356	0.0	595
Msa1355950	MtrunA17_Chr2g0322681	29.096	354	207	10	7	327	5	347	6.58e-40	149
Msa1355950	MtrunA17_Chr8g0370281	32.751	229	142	5	95	312	24	251	1.36e-33	130
Msa1355950	MtrunA17_Chr8g0370261	29.508	305	195	8	24	312	36	336	5.25e-33	129
Msa1355950	MtrunA17_Chr2g0322691	34.746	236	140	7	93	321	119	347	2.75e-32	127
Msa1355950	MtrunA17_Chr5g0407171	32.456	228	135	4	95	312	117	335	2.18e-31	124
Msa1355950	MtrunA17_Chr2g0283231	26.364	330	204	11	21	314	26	352	2.00e-30	121
Msa1355950	MtrunA17_Chr4g0046101	25.893	336	209	10	21	318	26	359	5.06e-30	120
Msa1355950	MtrunA17_Chr3g0144141	30.396	227	144	5	93	313	157	375	9.68e-30	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355950	AT2G24720.1	46.749	323	134	6	27	321	22	334	4.50e-89	286
Msa1355950	AT5G27100.1	43.429	350	153	6	1	321	1	334	1.32e-87	281
Msa1355950	AT5G11180.1	42.210	353	161	7	8	329	7	347	2.55e-85	275
Msa1355950	AT5G11210.2	44.277	332	146	5	26	329	27	347	3.23e-85	273
Msa1355950	AT5G11210.4	44.277	332	146	5	26	329	27	347	3.23e-85	273
Msa1355950	AT5G11210.10	44.277	332	146	5	26	329	27	347	3.86e-85	273
Msa1355950	AT5G11180.2	42.210	353	161	7	8	329	7	347	1.08e-84	275
Msa1355950	AT5G11210.5	44.277	332	146	5	26	329	27	347	1.33e-84	274
Msa1355950	AT2G29120.1	42.571	350	163	6	3	323	8	348	7.14e-83	270
Msa1355950	AT2G29110.1	43.258	356	158	9	3	329	5	345	3.45e-81	265

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Find 60 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATTGTCTACATAAA+TGG	0.116036	tig0015258:+550	Msa1355950:intergenic
AAAAGTTTAGAGCCTAGAAT+TGG	0.410550	tig0015258:+362	Msa1355950:intergenic
AAAATAGGGATGATGAGTCA+AGG	0.626352	tig0015258:-326	Msa1355950:CDS
AAACTATTGTCTACATAAAT+GGG	0.309910	tig0015258:+551	Msa1355950:intergenic
AAATACTCTAGTGGGTATAG+TGG	0.546761	tig0015258:+400	Msa1355950:intergenic
AAATTTGTGTCAACAAGTGT+TGG	0.461667	tig0015258:+137	Msa1355950:intergenic
AACTATTGTCTACATAAATG+GGG	0.625124	tig0015258:+552	Msa1355950:intergenic
AAGAGAAATTGCACTTAGAT+AGG	0.330576	tig0015258:+469	Msa1355950:intergenic
AATGGAACTGTTGGGAAGAT+AGG	0.385537	tig0015258:-2818	Msa1355950:CDS
ACCATGAATTTCAGAATTAT+TGG	0.177272	tig0015258:+2944	Msa1355950:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATTCATGGTTACTTGT+TGG	-	tig0015258:86-105	Msa1355950:CDS	30.0%
GAGTAATATTGTAGTGAAAG+TGG	-	tig0015258:156-175	Msa1355950:CDS	30.0%
GTAATTGATGTTAGCAGTAA+TGG	-	tig0015258:184-203	Msa1355950:CDS	30.0%
CATTGTAGATTTGAAGACTT+AGG	+	tig0015258:905-924	Msa1355950:intergenic	30.0%
ATAATGTTGTAAAAGACGAC+GGG	-	tig0015258:1018-1037	Msa1355950:intron	30.0%
AAAAAGATAGAGATGAGTAG+AGG	-	tig0015258:1258-1277	Msa1355950:intron	30.0%
AAAAGATAGAGATGAGTAGA+GGG	-	tig0015258:1259-1278	Msa1355950:intron	30.0%
AAGAAAGAAACAGAAAACCA+TGG	-	tig0015258:1501-1520	Msa1355950:intron	30.0%
ATACTAAATACACACGTCTT+TGG	+	tig0015258:1594-1613	Msa1355950:intergenic	30.0%
CGTTCAATTCAATTAAATGG+CGG	-	tig0015258:1678-1697	Msa1355950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0015258	gene	28	3014	28	ID=Msa1355950;Name=Msa1355950
tig0015258	mRNA	28	3014	28	ID=Msa1355950-mRNA-1;Parent=Msa1355950;Name=Msa1355950-mRNA-1;_AED=0.38;_eAED=0.38;_QI=33\|0\|0.5\|1\|1\|1\|2\|0\|329
tig0015258	exon	28	731	28	ID=Msa1355950-mRNA-1:exon:9666;Parent=Msa1355950-mRNA-1
tig0015258	exon	2699	3014	2699	ID=Msa1355950-mRNA-1:exon:9665;Parent=Msa1355950-mRNA-1
tig0015258	five_prime_UTR	2982	3014	2982	ID=Msa1355950-mRNA-1:five_prime_utr;Parent=Msa1355950-mRNA-1
tig0015258	CDS	2699	2981	2699	ID=Msa1355950-mRNA-1:cds;Parent=Msa1355950-mRNA-1
tig0015258	CDS	28	731	28	ID=Msa1355950-mRNA-1:cds;Parent=Msa1355950-mRNA-1

Gene Sequence

>Msa1355950

ATGGATAAGCATAATCCAATAATTCTGAAATTCATGGTTACTTGTTGGTGTCTAGTTAATCTTTTGGGTGGAATATTAGCACAAACTAAAAATGAGAGTAATATTGTAGTGAAAGTGGGAGCTGTAATTGATGTTAGCAGTAATGGAACTGTTGGGAAGATAGGAATGAGCTGCATAAACATGTCACTCTCTGATTTCTATCTCTCTCATTCTCATTACCAAACTAGAATCCAACTCATCGTAAGGGATTCTCATAGGGACGTCGTCACTGCAGCTGCACACGGAGACAAAGCTCATGTACCCATTGTAACCTTTTCAGCAACAAGCCCTTCACTTGCATCACTTCAAAGTCCATACTTCTTCCAAATATCACAAACTGATTCAGCTCAAGTAAAAGCCATCACCTCAACTATCCTAGCTTTTGGATGGAAACAAGTGGTCCCCATTTATGTAGACAATAGTTTTGGTGAAGGACTCATTCCATGTTTAACCAATTTTCTTCAACATGCCTACATTCAAGTTCCCTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCTATCACTCAAGAGCTTTATAAAATAATGACCACTATACCCACTAGAGTATTTGTTGTGCACATGTCACCAATTCTAGGCTCTAAACTTTTTACCTTAGCAAAAAAAATAGGGATGATGAGTCAAGGCTATGTTTGGATAGTAACCGATGGTATGGCTAATTTATTCAATTCATTGAGTTTTGATGTGAGGGAATCAATGGAAGGAGTGTTGGGTGTTAGGACTTATATTCCTAGAACAAAGAAACTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTTGTAAGTGATAATCCAACACTTGTTGACACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGAAAGTTGGAATTGGAAACACCAAATTTGATTACAATGAGAGTAATACATCA

Protein sequence

>Msa1355950

MDKHNPIILKFMVTCWCLVNLLGGILAQTKNESNIVVKVGAVIDVSSNGTVGKIGMSCINMSLSDFYLSHSHYQTRIQLIVRDSHRDVVTAAAHGDKAHVPIVTFSATSPSLASLQSPYFFQISQTDSAQVKAITSTILAFGWKQVVPIYVDNSFGEGLIPCLTNFLQHAYIQVPYLSAISLSATDDAITQELYKIMTTIPTRVFVVHMSPILGSKLFTLAKKIGMMSQGYVWIVTDGMANLFNSLSFDVRESMEGVLGVRTYIPRTKKLDDFRVRWKRKFVSDNPTLVDTNLNIFGIWAYDATIALAMAIEKVGIGNTKFDYNESNTS