Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355950 | XP_003603256.1 | 83.708 | 356 | 29 | 2 | 3 | 329 | 4 | 359 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355950 | sp|Q9SHV1|GLR22_ARATH | 46.749 | 323 | 134 | 6 | 27 | 321 | 22 | 334 | 4.42e-88 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355950 | G7J966 | 83.708 | 356 | 29 | 2 | 3 | 329 | 4 | 359 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa1355950 | 0.820227 | 7.667398e-53 | -8.615850e-47 |
| Msa0008850 | Msa1355950 | 0.824168 | 9.340008e-54 | -8.615850e-47 |
| Msa0011720 | Msa1355950 | 0.833404 | 5.438145e-56 | -8.615850e-47 |
| Msa0044710 | Msa1355950 | 0.803787 | 2.950303e-49 | -8.615850e-47 |
| Msa0047470 | Msa1355950 | 0.810850 | 9.388923e-51 | -8.615850e-47 |
| Msa0047940 | Msa1355950 | 0.812294 | 4.557369e-51 | -8.615850e-47 |
| Msa0050720 | Msa1355950 | 0.815688 | 8.131742e-52 | -8.615850e-47 |
| Msa0050770 | Msa1355950 | 0.808890 | 2.480174e-50 | -8.615850e-47 |
| Msa0055280 | Msa1355950 | 0.831973 | 1.231886e-55 | -8.615850e-47 |
| Msa0060600 | Msa1355950 | 0.827638 | 1.400565e-54 | -8.615850e-47 |
| Msa0068410 | Msa1355950 | 0.822468 | 2.330984e-53 | -8.615850e-47 |
| Msa0074230 | Msa1355950 | 0.812316 | 4.507920e-51 | -8.615850e-47 |
| Msa0083160 | Msa1355950 | 0.827142 | 1.842012e-54 | -8.615850e-47 |
| Msa0094100 | Msa1355950 | 0.829316 | 5.511379e-55 | -8.615850e-47 |
| Msa0101060 | Msa1355950 | 0.838889 | 2.198597e-57 | -8.615850e-47 |
| Msa0105340 | Msa1355950 | 0.824404 | 8.221422e-54 | -8.615850e-47 |
| Msa1349360 | Msa1355950 | 0.822040 | 2.929526e-53 | -8.615850e-47 |
| Msa1355950 | Msa1358870 | -0.803486 | 3.407700e-49 | -8.615850e-47 |
| Msa1355950 | Msa1362510 | 0.801597 | 8.353353e-49 | -8.615850e-47 |
| Msa1355950 | Msa1369530 | 0.800963 | 1.126308e-48 | -8.615850e-47 |
| Msa1355950 | Msa1397540 | 0.801299 | 9.611659e-49 | -8.615850e-47 |
| Msa1355950 | Msa1397970 | 0.852325 | 4.971014e-61 | -8.615850e-47 |
| Msa1355950 | Msa1421870 | 0.801282 | 9.691164e-49 | -8.615850e-47 |
| Msa1355950 | Msa1427830 | 0.838098 | 3.518374e-57 | -8.615850e-47 |
| Msa1355950 | Msa1431730 | 0.817137 | 3.853439e-52 | -8.615850e-47 |
| Msa1355950 | Msa1440180 | 0.807412 | 5.118105e-50 | -8.615850e-47 |
| Msa1355950 | Msa1440610 | 0.817347 | 3.457024e-52 | -8.615850e-47 |
| Msa1355950 | Msa1445790 | 0.815317 | 9.834060e-52 | -8.615850e-47 |
| Msa1355950 | Msa1449740 | 0.807921 | 3.990239e-50 | -8.615850e-47 |
| Msa1355950 | Msa1450020 | 0.823250 | 1.532715e-53 | -8.615850e-47 |
| Msa1355950 | Msa1454110 | 0.842850 | 2.009444e-58 | -8.615850e-47 |
| Msa0607280 | Msa1355950 | 0.820766 | 5.765501e-53 | -8.615850e-47 |
| Msa0617370 | Msa1355950 | 0.807015 | 6.213136e-50 | -8.615850e-47 |
| Msa0617830 | Msa1355950 | 0.800175 | 1.630306e-48 | -8.615850e-47 |
| Msa0620640 | Msa1355950 | 0.842258 | 2.886625e-58 | -8.615850e-47 |
| Msa0620750 | Msa1355950 | 0.817358 | 3.437138e-52 | -8.615850e-47 |
| Msa0621890 | Msa1355950 | 0.822163 | 2.744434e-53 | -8.615850e-47 |
| Msa0626230 | Msa1355950 | 0.805509 | 1.290018e-49 | -8.615850e-47 |
| Msa0628100 | Msa1355950 | 0.800990 | 1.112000e-48 | -8.615850e-47 |
| Msa0638280 | Msa1355950 | 0.800488 | 1.407515e-48 | -8.615850e-47 |
| Msa0638320 | Msa1355950 | 0.800052 | 1.726713e-48 | -8.615850e-47 |
| Msa0646390 | Msa1355950 | 0.842991 | 1.844027e-58 | -8.615850e-47 |
| Msa0651790 | Msa1355950 | 0.817881 | 2.619996e-52 | -8.615850e-47 |
| Msa0652980 | Msa1355950 | 0.828066 | 1.105128e-54 | -8.615850e-47 |
| Msa0653710 | Msa1355950 | 0.806987 | 6.298756e-50 | -8.615850e-47 |
| Msa0654060 | Msa1355950 | 0.848978 | 4.341324e-60 | -8.615850e-47 |
| Msa0656270 | Msa1355950 | 0.814405 | 1.566968e-51 | -8.615850e-47 |
| Msa0669200 | Msa1355950 | 0.802310 | 5.961960e-49 | -8.615850e-47 |
| Msa0690350 | Msa1355950 | 0.805529 | 1.277324e-49 | -8.615850e-47 |
| Msa0694250 | Msa1355950 | 0.833818 | 4.286053e-56 | -8.615850e-47 |
| Msa0697140 | Msa1355950 | 0.806719 | 7.176195e-50 | -8.615850e-47 |
| Msa0700070 | Msa1355950 | 0.828768 | 7.483731e-55 | -8.615850e-47 |
| Msa0707780 | Msa1355950 | 0.804625 | 1.974638e-49 | -8.615850e-47 |
| Msa0714340 | Msa1355950 | 0.829757 | 4.304788e-55 | -8.615850e-47 |
| Msa0714380 | Msa1355950 | 0.812193 | 4.795337e-51 | -8.615850e-47 |
| Msa0714600 | Msa1355950 | 0.803385 | 3.574970e-49 | -8.615850e-47 |
| Msa0719340 | Msa1355950 | 0.802217 | 6.230602e-49 | -8.615850e-47 |
| Msa0720270 | Msa1355950 | 0.805892 | 1.071656e-49 | -8.615850e-47 |
| Msa0722930 | Msa1355950 | 0.821137 | 4.737683e-53 | -8.615850e-47 |
| Msa0724050 | Msa1355950 | 0.831626 | 1.500650e-55 | -8.615850e-47 |
| Msa0726610 | Msa1355950 | 0.829949 | 3.866135e-55 | -8.615850e-47 |
| Msa0730180 | Msa1355950 | 0.804551 | 2.045700e-49 | -8.615850e-47 |
| Msa0731710 | Msa1355950 | 0.816294 | 5.954661e-52 | -8.615850e-47 |
| Msa0739610 | Msa1355950 | 0.828704 | 7.753714e-55 | -8.615850e-47 |
| Msa0743640 | Msa1355950 | 0.838147 | 3.416742e-57 | -8.615850e-47 |
| Msa0743650 | Msa1355950 | 0.807671 | 4.510721e-50 | -8.615850e-47 |
| Msa0750380 | Msa1355950 | 0.824786 | 6.682516e-54 | -8.615850e-47 |
| Msa0756310 | Msa1355950 | 0.816387 | 5.677018e-52 | -8.615850e-47 |
| Msa0760890 | Msa1355950 | 0.829951 | 3.860522e-55 | -8.615850e-47 |
| Msa0763880 | Msa1355950 | 0.836326 | 9.993908e-57 | -8.615850e-47 |
| Msa0763910 | Msa1355950 | 0.840387 | 8.963835e-58 | -8.615850e-47 |
| Msa0769800 | Msa1355950 | 0.804385 | 2.216258e-49 | -8.615850e-47 |
| Msa0771960 | Msa1355950 | 0.803810 | 2.917832e-49 | -8.615850e-47 |
| Msa0772150 | Msa1355950 | 0.811448 | 6.964374e-51 | -8.615850e-47 |
| Msa0775260 | Msa1355950 | 0.807432 | 5.068797e-50 | -8.615850e-47 |
| Msa0787720 | Msa1355950 | 0.840426 | 8.758422e-58 | -8.615850e-47 |
| Msa0789270 | Msa1355950 | 0.815325 | 9.793960e-52 | -8.615850e-47 |
| Msa0789280 | Msa1355950 | 0.818523 | 1.874885e-52 | -8.615850e-47 |
| Msa0789290 | Msa1355950 | 0.820644 | 6.150417e-53 | -8.615850e-47 |
| Msa0789300 | Msa1355950 | 0.820545 | 6.483562e-53 | -8.615850e-47 |
| Msa0807730 | Msa1355950 | 0.818516 | 1.882282e-52 | -8.615850e-47 |
| Msa0830720 | Msa1355950 | 0.832423 | 9.535403e-56 | -8.615850e-47 |
| Msa0835730 | Msa1355950 | 0.814359 | 1.604041e-51 | -8.615850e-47 |
| Msa0140910 | Msa1355950 | 0.808449 | 3.080507e-50 | -8.615850e-47 |
| Msa0151690 | Msa1355950 | 0.832942 | 7.087927e-56 | -8.615850e-47 |
| Msa0153430 | Msa1355950 | 0.806926 | 6.486966e-50 | -8.615850e-47 |
| Msa0162030 | Msa1355950 | 0.804339 | 2.265089e-49 | -8.615850e-47 |
| Msa0162050 | Msa1355950 | 0.804952 | 1.686919e-49 | -8.615850e-47 |
| Msa0168100 | Msa1355950 | 0.816218 | 6.194693e-52 | -8.615850e-47 |
| Msa0169620 | Msa1355950 | 0.805187 | 1.507027e-49 | -8.615850e-47 |
| Msa0182930 | Msa1355950 | 0.807091 | 5.986876e-50 | -8.615850e-47 |
| Msa0183610 | Msa1355950 | 0.800276 | 1.555255e-48 | -8.615850e-47 |
| Msa0193760 | Msa1355950 | 0.849594 | 2.925602e-60 | -8.615850e-47 |
| Msa0198440 | Msa1355950 | 0.823945 | 1.053611e-53 | -8.615850e-47 |
| Msa0203180 | Msa1355950 | 0.808255 | 3.388183e-50 | -8.615850e-47 |
| Msa0208630 | Msa1355950 | 0.823447 | 1.378142e-53 | -8.615850e-47 |
| Msa0223100 | Msa1355950 | 0.831359 | 1.745628e-55 | -8.615850e-47 |
| Msa0223290 | Msa1355950 | 0.835243 | 1.879413e-56 | -8.615850e-47 |
| Msa0223380 | Msa1355950 | 0.839070 | 1.974582e-57 | -8.615850e-47 |
| Msa0223960 | Msa1355950 | 0.803966 | 2.708598e-49 | -8.615850e-47 |
| Msa0235550 | Msa1355950 | 0.818726 | 1.686557e-52 | -8.615850e-47 |
| Msa1272130 | Msa1355950 | 0.806431 | 8.254304e-50 | -8.615850e-47 |
| Msa1272480 | Msa1355950 | 0.812857 | 3.432353e-51 | -8.615850e-47 |
| Msa1272960 | Msa1355950 | 0.831232 | 1.876098e-55 | -8.615850e-47 |
| Msa1292730 | Msa1355950 | 0.809833 | 1.556462e-50 | -8.615850e-47 |
| Msa1328850 | Msa1355950 | 0.826997 | 1.994946e-54 | -8.615850e-47 |
| Msa1335720 | Msa1355950 | 0.800798 | 1.216841e-48 | -8.615850e-47 |
| Msa0371420 | Msa1355950 | -0.803321 | 3.685632e-49 | -8.615850e-47 |
| Msa0371540 | Msa1355950 | 0.809477 | 1.855637e-50 | -8.615850e-47 |
| Msa0380920 | Msa1355950 | 0.816881 | 4.398897e-52 | -8.615850e-47 |
| Msa0411000 | Msa1355950 | 0.822653 | 2.111280e-53 | -8.615850e-47 |
| Msa0414070 | Msa1355950 | 0.801206 | 1.004340e-48 | -8.615850e-47 |
| Msa0418430 | Msa1355950 | 0.800771 | 1.232554e-48 | -8.615850e-47 |
| Msa0419620 | Msa1355950 | -0.860181 | 2.470455e-63 | -8.615850e-47 |
| Msa0430820 | Msa1355950 | 0.816164 | 6.368322e-52 | -8.615850e-47 |
| Msa0431520 | Msa1355950 | 0.884680 | 1.559143e-71 | -8.615850e-47 |
| Msa0431830 | Msa1355950 | 0.926193 | 6.562033e-91 | -8.615850e-47 |
| Msa0448080 | Msa1355950 | 0.801293 | 9.640566e-49 | -8.615850e-47 |
| Msa0455230 | Msa1355950 | 0.802294 | 6.005710e-49 | -8.615850e-47 |
| Msa0462590 | Msa1355950 | 0.800139 | 1.658217e-48 | -8.615850e-47 |
| Msa0465680 | Msa1355950 | -0.802904 | 4.496607e-49 | -8.615850e-47 |
| Msa0466060 | Msa1355950 | 0.804015 | 2.645952e-49 | -8.615850e-47 |
| Msa0467800 | Msa1355950 | 0.806246 | 9.027640e-50 | -8.615850e-47 |
| Msa0467880 | Msa1355950 | 0.807883 | 4.066690e-50 | -8.615850e-47 |
| Msa0993530 | Msa1355950 | 0.808028 | 3.788023e-50 | -8.615850e-47 |
| Msa1015060 | Msa1355950 | 0.804796 | 1.818972e-49 | -8.615850e-47 |
| Msa1016110 | Msa1355950 | 0.829937 | 3.892077e-55 | -8.615850e-47 |
| Msa1026760 | Msa1355950 | 0.831133 | 1.983483e-55 | -8.615850e-47 |
| Msa1026790 | Msa1355950 | 0.824745 | 6.832636e-54 | -8.615850e-47 |
| Msa1032350 | Msa1355950 | 0.806599 | 7.605186e-50 | -8.615850e-47 |
| Msa1037700 | Msa1355950 | -0.817193 | 3.744390e-52 | -8.615850e-47 |
| Msa1044040 | Msa1355950 | 0.813414 | 2.590825e-51 | -8.615850e-47 |
| Msa1046610 | Msa1355950 | 0.804960 | 1.680422e-49 | -8.615850e-47 |
| Msa1069300 | Msa1355950 | 0.807853 | 4.127233e-50 | -8.615850e-47 |
| Msa1072350 | Msa1355950 | 0.816882 | 4.398105e-52 | -8.615850e-47 |
| Msa1078740 | Msa1355950 | 0.806818 | 6.839772e-50 | -8.615850e-47 |
| Msa1080470 | Msa1355950 | 0.808394 | 3.164828e-50 | -8.615850e-47 |
| Msa1100490 | Msa1355950 | 0.805704 | 1.173852e-49 | -8.615850e-47 |
| Msa0240780 | Msa1355950 | 0.819200 | 1.315916e-52 | -8.615850e-47 |
| Msa0252180 | Msa1355950 | 0.812768 | 3.591083e-51 | -8.615850e-47 |
| Msa0265210 | Msa1355950 | 0.831683 | 1.452615e-55 | -8.615850e-47 |
| Msa0265820 | Msa1355950 | 0.827205 | 1.778937e-54 | -8.615850e-47 |
| Msa0274520 | Msa1355950 | 0.831231 | 1.876530e-55 | -8.615850e-47 |
| Msa0277530 | Msa1355950 | 0.814109 | 1.821534e-51 | -8.615850e-47 |
| Msa0278670 | Msa1355950 | 0.823263 | 1.521795e-53 | -8.615850e-47 |
| Msa0281940 | Msa1355950 | 0.815316 | 9.839865e-52 | -8.615850e-47 |
| Msa0282170 | Msa1355950 | 0.830870 | 2.301757e-55 | -8.615850e-47 |
| Msa0284870 | Msa1355950 | 0.829844 | 4.100910e-55 | -8.615850e-47 |
| Msa0288320 | Msa1355950 | 0.807834 | 4.165133e-50 | -8.615850e-47 |
| Msa0292180 | Msa1355950 | 0.813811 | 2.118610e-51 | -8.615850e-47 |
| Msa0302650 | Msa1355950 | 0.819239 | 1.289374e-52 | -8.615850e-47 |
| Msa0318070 | Msa1355950 | 0.814573 | 1.438257e-51 | -8.615850e-47 |
| Msa0326670 | Msa1355950 | 0.818534 | 1.864630e-52 | -8.615850e-47 |
| Msa0339870 | Msa1355950 | 0.803321 | 3.685732e-49 | -8.615850e-47 |
| Msa0340550 | Msa1355950 | 0.801998 | 6.909641e-49 | -8.615850e-47 |
| Msa0349050 | Msa1355950 | 0.813051 | 3.113235e-51 | -8.615850e-47 |
| Msa0350670 | Msa1355950 | 0.800868 | 1.177816e-48 | -8.615850e-47 |
| Msa1118140 | Msa1355950 | 0.830766 | 2.440890e-55 | -8.615850e-47 |
| Msa1130210 | Msa1355950 | -0.830290 | 3.191897e-55 | -8.615850e-47 |
| Msa1130650 | Msa1355950 | 0.817846 | 2.667626e-52 | -8.615850e-47 |
| Msa1154160 | Msa1355950 | 0.823650 | 1.235670e-53 | -8.615850e-47 |
| Msa1159360 | Msa1355950 | 0.817145 | 3.838913e-52 | -8.615850e-47 |
| Msa1169970 | Msa1355950 | 0.805624 | 1.220232e-49 | -8.615850e-47 |
| Msa1182830 | Msa1355950 | 0.801082 | 1.064791e-48 | -8.615850e-47 |
| Msa1184580 | Msa1355950 | 0.810968 | 8.851541e-51 | -8.615850e-47 |
| Msa1206020 | Msa1355950 | 0.829923 | 3.923057e-55 | -8.615850e-47 |
| Msa1220230 | Msa1355950 | 0.803640 | 3.166076e-49 | -8.615850e-47 |
| Msa1223160 | Msa1355950 | -0.801547 | 8.553404e-49 | -8.615850e-47 |
| Msa0490300 | Msa1355950 | 0.818998 | 1.462789e-52 | -8.615850e-47 |
| Msa0502910 | Msa1355950 | 0.811535 | 6.668623e-51 | -8.615850e-47 |
| Msa0511720 | Msa1355950 | -0.836844 | 7.375578e-57 | -8.615850e-47 |
| Msa0517340 | Msa1355950 | 0.804822 | 1.796468e-49 | -8.615850e-47 |
| Msa0520220 | Msa1355950 | 0.839133 | 1.901511e-57 | -8.615850e-47 |
| Msa0524970 | Msa1355950 | -0.806991 | 6.285919e-50 | -8.615850e-47 |
| Msa0530950 | Msa1355950 | 0.814642 | 1.388574e-51 | -8.615850e-47 |
| Msa0542040 | Msa1355950 | 0.802202 | 6.275555e-49 | -8.615850e-47 |
| Msa0549740 | Msa1355950 | 0.842994 | 1.839696e-58 | -8.615850e-47 |
| Msa0553520 | Msa1355950 | 0.818000 | 2.463182e-52 | -8.615850e-47 |
| Msa0557630 | Msa1355950 | 0.810811 | 9.574789e-51 | -8.615850e-47 |
| Msa0558890 | Msa1355950 | 0.804308 | 2.298906e-49 | -8.615850e-47 |
| Msa0576600 | Msa1355950 | 0.815184 | 1.052561e-51 | -8.615850e-47 |
| Msa0577230 | Msa1355950 | 0.827790 | 1.288003e-54 | -8.615850e-47 |
| Msa0590660 | Msa1355950 | 0.833496 | 5.158635e-56 | -8.615850e-47 |
| Msa0844100 | Msa1355950 | 0.832627 | 8.485449e-56 | -8.615850e-47 |
| Msa0847200 | Msa1355950 | 0.820937 | 5.267037e-53 | -8.615850e-47 |
| Msa0853170 | Msa1355950 | 0.810738 | 9.930364e-51 | -8.615850e-47 |
| Msa0863760 | Msa1355950 | 0.835808 | 1.352896e-56 | -8.615850e-47 |
| Msa0863770 | Msa1355950 | 0.804631 | 1.969214e-49 | -8.615850e-47 |
| Msa0887070 | Msa1355950 | 0.847482 | 1.124885e-59 | -8.615850e-47 |
| Msa0899700 | Msa1355950 | 0.808285 | 3.337963e-50 | -8.615850e-47 |
| Msa0903730 | Msa1355950 | 0.820238 | 7.622462e-53 | -8.615850e-47 |
| Msa0908170 | Msa1355950 | 0.824444 | 8.047032e-54 | -8.615850e-47 |
| Msa0934830 | Msa1355950 | 0.808374 | 3.196723e-50 | -8.615850e-47 |
| Msa0950410 | Msa1355950 | 0.842918 | 1.928252e-58 | -8.615850e-47 |
| Msa0950620 | Msa1355950 | 0.839648 | 1.397764e-57 | -8.615850e-47 |
| Msa0961420 | Msa1355950 | -0.809032 | 2.312574e-50 | -8.615850e-47 |
| Msa0964680 | Msa1355950 | 0.832998 | 6.865573e-56 | -8.615850e-47 |
| Msa0971860 | Msa1355950 | 0.819897 | 9.123751e-53 | -8.615850e-47 |
| Msa0972860 | Msa1355950 | 0.805540 | 1.270559e-49 | -8.615850e-47 |
| Msa0973230 | Msa1355950 | 0.812067 | 5.108552e-51 | -8.615850e-47 |
| Msa0978000 | Msa1355950 | 0.827791 | 1.287358e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355950 | MtrunA17_Chr3g0136621 | 83.708 | 356 | 29 | 2 | 3 | 329 | 4 | 359 | 0.0 | 596 |
| Msa1355950 | MtrunA17_Chr3g0136611 | 83.380 | 355 | 31 | 1 | 3 | 329 | 2 | 356 | 0.0 | 595 |
| Msa1355950 | MtrunA17_Chr2g0322681 | 29.096 | 354 | 207 | 10 | 7 | 327 | 5 | 347 | 6.58e-40 | 149 |
| Msa1355950 | MtrunA17_Chr8g0370281 | 32.751 | 229 | 142 | 5 | 95 | 312 | 24 | 251 | 1.36e-33 | 130 |
| Msa1355950 | MtrunA17_Chr8g0370261 | 29.508 | 305 | 195 | 8 | 24 | 312 | 36 | 336 | 5.25e-33 | 129 |
| Msa1355950 | MtrunA17_Chr2g0322691 | 34.746 | 236 | 140 | 7 | 93 | 321 | 119 | 347 | 2.75e-32 | 127 |
| Msa1355950 | MtrunA17_Chr5g0407171 | 32.456 | 228 | 135 | 4 | 95 | 312 | 117 | 335 | 2.18e-31 | 124 |
| Msa1355950 | MtrunA17_Chr2g0283231 | 26.364 | 330 | 204 | 11 | 21 | 314 | 26 | 352 | 2.00e-30 | 121 |
| Msa1355950 | MtrunA17_Chr4g0046101 | 25.893 | 336 | 209 | 10 | 21 | 318 | 26 | 359 | 5.06e-30 | 120 |
| Msa1355950 | MtrunA17_Chr3g0144141 | 30.396 | 227 | 144 | 5 | 93 | 313 | 157 | 375 | 9.68e-30 | 119 |
| Msa1355950 | MtrunA17_Chr5g0424621 | 28.622 | 283 | 175 | 9 | 47 | 314 | 83 | 353 | 4.58e-22 | 96.7 |
| Msa1355950 | MtrunA17_Chr5g0424541 | 29.528 | 254 | 161 | 8 | 84 | 322 | 111 | 361 | 6.05e-22 | 96.7 |
| Msa1355950 | MtrunA17_Chr5g0424521 | 29.565 | 230 | 144 | 8 | 84 | 298 | 17 | 243 | 8.58e-19 | 87.4 |
| Msa1355950 | MtrunA17_Chr2g0283241 | 25.080 | 311 | 188 | 9 | 39 | 312 | 39 | 341 | 5.20e-17 | 82.0 |
| Msa1355950 | MtrunA17_Chr2g0283251 | 23.620 | 326 | 204 | 10 | 31 | 319 | 32 | 349 | 2.01e-16 | 80.1 |
| Msa1355950 | MtrunA17_Chr2g0283261 | 22.492 | 329 | 206 | 9 | 31 | 321 | 33 | 350 | 5.21e-14 | 73.2 |
| Msa1355950 | MtrunA17_Chr7g0230081 | 25.382 | 327 | 197 | 12 | 37 | 322 | 52 | 372 | 1.48e-13 | 71.6 |
| Msa1355950 | MtrunA17_Chr2g0283211 | 28.667 | 150 | 101 | 5 | 167 | 314 | 16 | 161 | 4.55e-13 | 69.7 |
| Msa1355950 | MtrunA17_Chr7g0230091 | 31.068 | 103 | 70 | 1 | 221 | 322 | 6 | 108 | 7.62e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355950 | AT2G24720.1 | 46.749 | 323 | 134 | 6 | 27 | 321 | 22 | 334 | 4.50e-89 | 286 |
| Msa1355950 | AT5G27100.1 | 43.429 | 350 | 153 | 6 | 1 | 321 | 1 | 334 | 1.32e-87 | 281 |
| Msa1355950 | AT5G11180.1 | 42.210 | 353 | 161 | 7 | 8 | 329 | 7 | 347 | 2.55e-85 | 275 |
| Msa1355950 | AT5G11210.2 | 44.277 | 332 | 146 | 5 | 26 | 329 | 27 | 347 | 3.23e-85 | 273 |
| Msa1355950 | AT5G11210.4 | 44.277 | 332 | 146 | 5 | 26 | 329 | 27 | 347 | 3.23e-85 | 273 |
| Msa1355950 | AT5G11210.10 | 44.277 | 332 | 146 | 5 | 26 | 329 | 27 | 347 | 3.86e-85 | 273 |
| Msa1355950 | AT5G11180.2 | 42.210 | 353 | 161 | 7 | 8 | 329 | 7 | 347 | 1.08e-84 | 275 |
| Msa1355950 | AT5G11210.5 | 44.277 | 332 | 146 | 5 | 26 | 329 | 27 | 347 | 1.33e-84 | 274 |
| Msa1355950 | AT2G29120.1 | 42.571 | 350 | 163 | 6 | 3 | 323 | 8 | 348 | 7.14e-83 | 270 |
| Msa1355950 | AT2G29110.1 | 43.258 | 356 | 158 | 9 | 3 | 329 | 5 | 345 | 3.45e-81 | 265 |
| Msa1355950 | AT2G29110.2 | 43.258 | 356 | 158 | 9 | 3 | 329 | 6 | 346 | 3.49e-81 | 265 |
| Msa1355950 | AT5G11210.1 | 45.455 | 297 | 126 | 3 | 61 | 329 | 1 | 289 | 2.11e-79 | 259 |
| Msa1355950 | AT2G24710.2 | 45.118 | 297 | 127 | 4 | 53 | 321 | 69 | 357 | 6.53e-79 | 256 |
| Msa1355950 | AT2G24710.1 | 45.118 | 297 | 127 | 4 | 53 | 321 | 45 | 333 | 1.86e-78 | 257 |
| Msa1355950 | AT2G24710.3 | 45.118 | 297 | 127 | 4 | 53 | 321 | 69 | 357 | 2.43e-78 | 257 |
| Msa1355950 | AT2G29100.2 | 41.026 | 351 | 165 | 8 | 1 | 322 | 2 | 339 | 3.60e-76 | 251 |
| Msa1355950 | AT2G29100.1 | 41.193 | 352 | 159 | 9 | 3 | 322 | 2 | 337 | 6.76e-76 | 251 |
| Msa1355950 | AT4G31710.1 | 42.286 | 350 | 157 | 7 | 1 | 321 | 1 | 334 | 1.89e-75 | 249 |
| Msa1355950 | AT4G31710.2 | 42.286 | 350 | 157 | 7 | 1 | 321 | 24 | 357 | 3.35e-75 | 248 |
| Msa1355950 | AT5G11210.8 | 48.936 | 235 | 112 | 2 | 95 | 329 | 39 | 265 | 2.29e-72 | 237 |
| Msa1355950 | AT5G11210.7 | 48.936 | 235 | 112 | 2 | 95 | 329 | 39 | 265 | 2.33e-72 | 238 |
| Msa1355950 | AT5G11210.6 | 48.936 | 235 | 112 | 2 | 95 | 329 | 39 | 265 | 2.33e-72 | 238 |
| Msa1355950 | AT5G11210.3 | 48.936 | 235 | 112 | 2 | 95 | 329 | 47 | 273 | 2.99e-72 | 237 |
| Msa1355950 | AT5G11210.9 | 48.936 | 235 | 112 | 2 | 95 | 329 | 39 | 265 | 7.18e-72 | 238 |
| Msa1355950 | AT3G07520.1 | 32.131 | 305 | 171 | 6 | 37 | 312 | 46 | 343 | 3.48e-46 | 167 |
| Msa1355950 | AT5G48400.1 | 31.529 | 314 | 178 | 7 | 31 | 312 | 34 | 342 | 1.44e-43 | 159 |
| Msa1355950 | AT5G48400.2 | 31.529 | 314 | 178 | 7 | 31 | 312 | 34 | 342 | 2.33e-43 | 159 |
| Msa1355950 | AT5G48410.3 | 30.183 | 328 | 187 | 8 | 26 | 318 | 26 | 346 | 1.50e-39 | 148 |
| Msa1355950 | AT5G48410.2 | 30.183 | 328 | 187 | 8 | 26 | 318 | 26 | 346 | 1.50e-39 | 148 |
| Msa1355950 | AT5G48410.4 | 30.183 | 328 | 187 | 8 | 26 | 318 | 26 | 346 | 1.69e-39 | 148 |
| Msa1355950 | AT5G48410.1 | 30.183 | 328 | 187 | 8 | 26 | 318 | 26 | 346 | 2.03e-39 | 148 |
| Msa1355950 | AT2G32390.6 | 34.091 | 220 | 140 | 4 | 96 | 312 | 133 | 350 | 4.14e-37 | 140 |
| Msa1355950 | AT2G32390.7 | 34.091 | 220 | 140 | 4 | 96 | 312 | 133 | 350 | 5.06e-37 | 140 |
| Msa1355950 | AT2G32390.2 | 33.937 | 221 | 141 | 4 | 95 | 312 | 30 | 248 | 5.37e-37 | 141 |
| Msa1355950 | AT2G32390.5 | 33.937 | 221 | 141 | 4 | 95 | 312 | 132 | 350 | 5.47e-37 | 141 |
| Msa1355950 | AT2G32390.4 | 33.937 | 221 | 141 | 4 | 95 | 312 | 132 | 350 | 5.99e-37 | 140 |
| Msa1355950 | AT2G32390.3 | 33.937 | 221 | 141 | 4 | 95 | 312 | 132 | 350 | 5.99e-37 | 140 |
| Msa1355950 | AT2G32390.1 | 33.937 | 221 | 141 | 4 | 95 | 312 | 74 | 292 | 6.42e-37 | 141 |
| Msa1355950 | AT1G42540.3 | 28.107 | 338 | 201 | 9 | 9 | 313 | 1 | 329 | 3.48e-36 | 138 |
| Msa1355950 | AT1G42540.1 | 28.107 | 338 | 201 | 9 | 9 | 313 | 1 | 329 | 4.61e-36 | 138 |
| Msa1355950 | AT1G42540.4 | 28.107 | 338 | 201 | 9 | 9 | 313 | 1 | 329 | 4.61e-36 | 138 |
| Msa1355950 | AT1G42540.2 | 28.107 | 338 | 201 | 9 | 9 | 313 | 1 | 329 | 4.61e-36 | 138 |
| Msa1355950 | AT3G51480.4 | 33.766 | 231 | 137 | 5 | 100 | 324 | 119 | 339 | 7.79e-35 | 135 |
| Msa1355950 | AT3G51480.1 | 33.766 | 231 | 137 | 5 | 100 | 324 | 119 | 339 | 7.79e-35 | 135 |
| Msa1355950 | AT3G51480.2 | 33.766 | 231 | 137 | 5 | 100 | 324 | 29 | 249 | 8.25e-35 | 134 |
| Msa1355950 | AT3G51480.3 | 33.766 | 231 | 137 | 5 | 100 | 324 | 119 | 339 | 9.63e-35 | 134 |
| Msa1355950 | AT1G05200.5 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 2.72e-34 | 133 |
| Msa1355950 | AT1G05200.4 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 3.03e-34 | 132 |
| Msa1355950 | AT1G05200.6 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 3.90e-34 | 133 |
| Msa1355950 | AT1G05200.2 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 3.90e-34 | 133 |
| Msa1355950 | AT1G05200.1 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 3.90e-34 | 133 |
| Msa1355950 | AT1G05200.7 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 4.18e-34 | 132 |
| Msa1355950 | AT1G05200.3 | 33.484 | 221 | 136 | 3 | 95 | 312 | 145 | 357 | 4.18e-34 | 132 |
| Msa1355950 | AT3G04110.1 | 30.588 | 340 | 194 | 11 | 9 | 316 | 1 | 330 | 8.63e-34 | 132 |
| Msa1355950 | AT3G04110.2 | 30.588 | 340 | 194 | 11 | 9 | 316 | 1 | 330 | 9.11e-34 | 131 |
| Msa1355950 | AT3G04110.3 | 32.154 | 311 | 170 | 10 | 37 | 316 | 30 | 330 | 1.37e-33 | 131 |
| Msa1355950 | AT4G35290.4 | 33.186 | 226 | 138 | 5 | 95 | 314 | 114 | 332 | 8.42e-33 | 129 |
| Msa1355950 | AT4G35290.3 | 33.186 | 226 | 138 | 5 | 95 | 314 | 114 | 332 | 8.42e-33 | 129 |
| Msa1355950 | AT4G35290.1 | 33.186 | 226 | 138 | 5 | 95 | 314 | 114 | 332 | 8.42e-33 | 129 |
| Msa1355950 | AT4G35290.2 | 33.186 | 226 | 138 | 5 | 95 | 314 | 114 | 332 | 8.42e-33 | 129 |
| Msa1355950 | AT4G35290.5 | 33.186 | 226 | 138 | 5 | 95 | 314 | 114 | 332 | 8.42e-33 | 129 |
| Msa1355950 | AT4G35290.6 | 33.333 | 225 | 137 | 5 | 96 | 314 | 115 | 332 | 9.17e-33 | 129 |
| Msa1355950 | AT2G17260.1 | 33.333 | 228 | 140 | 7 | 100 | 321 | 123 | 344 | 3.43e-31 | 124 |
| Msa1355950 | AT2G32400.1 | 27.019 | 322 | 189 | 10 | 36 | 325 | 30 | 337 | 3.73e-31 | 124 |
Find 60 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTATTGTCTACATAAA+TGG | 0.116036 | tig0015258:+550 | Msa1355950:intergenic |
| CTGAATCAGTTTGTGATATT+TGG | 0.172292 | tig0015258:+630 | Msa1355950:intergenic |
| TCCATTATATCGATCTTAAT+TGG | 0.176789 | tig0015258:+2977 | Msa1355950:intergenic |
| ACCATGAATTTCAGAATTAT+TGG | 0.177272 | tig0015258:+2944 | Msa1355950:intergenic |
| ACTCTCATTGTAATCAAATT+TGG | 0.184403 | tig0015258:+37 | Msa1355950:intergenic |
| TCATCTAGTTTCTTTGTTCT+AGG | 0.242984 | tig0015258:+200 | Msa1355950:intergenic |
| GTAGGCATGTTGAAGAAAAT+TGG | 0.262855 | tig0015258:+502 | Msa1355950:intergenic |
| ACCTCAACTATCCTAGCTTT+TGG | 0.264923 | tig0015258:-590 | Msa1355950:CDS |
| TCCAATTAAGATCGATATAA+TGG | 0.287675 | tig0015258:-2978 | Msa1355950:exon |
| GTGCACATGTCACCAATTCT+AGG | 0.300256 | tig0015258:-374 | Msa1355950:CDS |
| AAACTATTGTCTACATAAAT+GGG | 0.309910 | tig0015258:+551 | Msa1355950:intergenic |
| TGTGATATTTGGAAGAAGTA+TGG | 0.310744 | tig0015258:+641 | Msa1355950:intergenic |
| CGATGAGTTGGATTCTAGTT+TGG | 0.312892 | tig0015258:+2741 | Msa1355950:intergenic |
| AAGAGAAATTGCACTTAGAT+AGG | 0.330576 | tig0015258:+469 | Msa1355950:intergenic |
| TGGAAGGAGTGTTGGGTGTT+AGG | 0.354875 | tig0015258:-232 | Msa1355950:CDS |
| TCCAATAATTCTGAAATTCA+TGG | 0.354982 | tig0015258:-2945 | Msa1355950:CDS |
| TTGGTGTCTAGTTAATCTTT+TGG | 0.358808 | tig0015258:-2915 | Msa1355950:CDS |
| ATTTATGTAGACAATAGTTT+TGG | 0.361139 | tig0015258:-548 | Msa1355950:CDS |
| GCTATTGAGAAAGTTGGAAT+TGG | 0.368469 | tig0015258:-65 | Msa1355950:CDS |
| TCATCGTAAGGGATTCTCAT+AGG | 0.372730 | tig0015258:-2724 | Msa1355950:CDS |
| AATGGAACTGTTGGGAAGAT+AGG | 0.385537 | tig0015258:-2818 | Msa1355950:CDS |
| TGAAGGGCTTGTTGCTGAAA+AGG | 0.397820 | tig0015258:+682 | Msa1355950:intergenic |
| TGATGAGTCAAGGCTATGTT+TGG | 0.402077 | tig0015258:-316 | Msa1355950:CDS |
| AAAAGTTTAGAGCCTAGAAT+TGG | 0.410550 | tig0015258:+362 | Msa1355950:intergenic |
| GAGTAATATTGTAGTGAAAG+TGG | 0.450926 | tig0015258:-2864 | Msa1355950:CDS |
| GTAATTGATGTTAGCAGTAA+TGG | 0.457003 | tig0015258:-2836 | Msa1355950:CDS |
| AAATTTGTGTCAACAAGTGT+TGG | 0.461667 | tig0015258:+137 | Msa1355950:intergenic |
| TGAAATTCATGGTTACTTGT+TGG | 0.473891 | tig0015258:-2934 | Msa1355950:CDS |
| AGTAATATTGTAGTGAAAGT+GGG | 0.481193 | tig0015258:-2863 | Msa1355950:CDS |
| GGAATCAATGGAAGGAGTGT+TGG | 0.481226 | tig0015258:-240 | Msa1355950:CDS |
| GAATCAATGGAAGGAGTGTT+GGG | 0.489443 | tig0015258:-239 | Msa1355950:CDS |
| CTAGAATCCAACTCATCGTA+AGG | 0.492390 | tig0015258:-2736 | Msa1355950:CDS |
| GCAATGGCTATTGAGAAAGT+TGG | 0.497583 | tig0015258:-71 | Msa1355950:CDS |
| GAGAATCCCTTACGATGAGT+TGG | 0.498988 | tig0015258:+2729 | Msa1355950:intergenic |
| GTTGCTGAAAAGGTTACAAT+GGG | 0.513038 | tig0015258:+692 | Msa1355950:intergenic |
| CTTGTTTCCATCCAAAAGCT+AGG | 0.520602 | tig0015258:+579 | Msa1355950:intergenic |
| TGAAGAAAATTGGTTAAACA+TGG | 0.527626 | tig0015258:+512 | Msa1355950:intergenic |
| TTGGATAGTAACCGATGGTA+TGG | 0.535162 | tig0015258:-297 | Msa1355950:CDS |
| TAGATAGGGAACTTGAATGT+AGG | 0.538157 | tig0015258:+484 | Msa1355950:intergenic |
| AGAGAAATTGCACTTAGATA+GGG | 0.538426 | tig0015258:+470 | Msa1355950:intergenic |
| AGCTAGGATAGTTGAGGTGA+TGG | 0.540259 | tig0015258:+595 | Msa1355950:intergenic |
| GTTAGCAGTAATGGAACTGT+TGG | 0.546757 | tig0015258:-2827 | Msa1355950:CDS |
| AAATACTCTAGTGGGTATAG+TGG | 0.546761 | tig0015258:+400 | Msa1355950:intergenic |
| CATCGTAAGGGATTCTCATA+GGG | 0.551334 | tig0015258:-2723 | Msa1355950:CDS |
| TGTTGCTGAAAAGGTTACAA+TGG | 0.553660 | tig0015258:+691 | Msa1355950:intergenic |
| TTAGCAGTAATGGAACTGTT+GGG | 0.557392 | tig0015258:-2826 | Msa1355950:CDS |
| GTGCACAACAAATACTCTAG+TGG | 0.583204 | tig0015258:+391 | Msa1355950:intergenic |
| TTTGAAGTGATGCAAGTGAA+GGG | 0.587775 | tig0015258:+666 | Msa1355950:intergenic |
| TGCACAACAAATACTCTAGT+GGG | 0.590633 | tig0015258:+392 | Msa1355950:intergenic |
| TGCTACAATTGCATTAGCAA+TGG | 0.595360 | tig0015258:-87 | Msa1355950:CDS |
| GAATAAATTAGCCATACCAT+CGG | 0.598751 | tig0015258:+286 | Msa1355950:intergenic |
| GATGTGAGGGAATCAATGGA+AGG | 0.606194 | tig0015258:-248 | Msa1355950:CDS |
| TAGAATCCAACTCATCGTAA+GGG | 0.616584 | tig0015258:-2735 | Msa1355950:CDS |
| GTCGTCACTGCAGCTGCACA+CGG | 0.622767 | tig0015258:-2698 | Msa1355950:intron |
| AACTATTGTCTACATAAATG+GGG | 0.625124 | tig0015258:+552 | Msa1355950:intergenic |
| AAAATAGGGATGATGAGTCA+AGG | 0.626352 | tig0015258:-326 | Msa1355950:CDS |
| TCCAAAAGCTAGGATAGTTG+AGG | 0.631469 | tig0015258:+589 | Msa1355950:intergenic |
| CTTTGAAGTGATGCAAGTGA+AGG | 0.639660 | tig0015258:+665 | Msa1355950:intergenic |
| TATGTTTGGATAGTAACCGA+TGG | 0.661801 | tig0015258:-302 | Msa1355950:CDS |
| TTGAGTGATAGCATCATCTG+TGG | 0.666467 | tig0015258:+442 | Msa1355940:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCATATTTCTATAAAAA+CGG | - | tig0015258:1088-1107 | Msa1355950:intron | 10.0% |
| !! | TCATACAAAAAAAAAAAAAA+AGG | + | tig0015258:1350-1369 | Msa1355950:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGTATGAAA+TGG | - | tig0015258:1352-1371 | Msa1355950:intron | 10.0% |
| !! | GTTAAAATATGTGTTAAAAA+GGG | + | tig0015258:510-529 | Msa1355950:intergenic | 15.0% |
| !! | AGTTAAAATATGTGTTAAAA+AGG | + | tig0015258:511-530 | Msa1355950:intergenic | 15.0% |
| !!! | AAAAAAGTGTAAATACTTTA+AGG | + | tig0015258:691-710 | Msa1355950:intergenic | 15.0% |
| !!! | TTGAATGTGTATTTTTTTAT+AGG | + | tig0015258:730-749 | Msa1355950:intergenic | 15.0% |
| !! | AAAAAAATACACATTCAAAT+TGG | - | tig0015258:732-751 | Msa1355950:intron | 15.0% |
| !! | ATAGAAAAAACAATGTCAAT+GGG | - | tig0015258:1130-1149 | Msa1355950:intron | 20.0% |
| !!! | TAGTCATACATGATTTTTAA+TGG | + | tig0015258:1402-1421 | Msa1355950:intergenic | 20.0% |
| !! | TGTATTTAGTATTTACCTTA+CGG | - | tig0015258:1602-1621 | Msa1355950:intron | 20.0% |
| !! | ATTTCTCTTACTTTATTACT+AGG | - | tig0015258:1876-1895 | Msa1355950:intron | 20.0% |
| !!! | AAATCTTGTAGTGTTTTTTT+TGG | + | tig0015258:1935-1954 | Msa1355950:intergenic | 20.0% |
| !! | TAACATTTCATTAAGAGAAT+AGG | + | tig0015258:2186-2205 | Msa1355950:intergenic | 20.0% |
| !!! | TTTGTTTCTATTGTTGTTAT+TGG | + | tig0015258:2274-2293 | Msa1355950:intergenic | 20.0% |
| !! | AAACTATTGTCTACATAAAT+GGG | + | tig0015258:2472-2491 | Msa1355950:intergenic | 20.0% |
| !! | AAAACTATTGTCTACATAAA+TGG | + | tig0015258:2473-2492 | Msa1355950:intergenic | 20.0% |
| !!! | ATTTATGTAGACAATAGTTT+TGG | - | tig0015258:2472-2491 | Msa1355950:intron | 20.0% |
| !! | TTTACCTTAGCAAAAAAAAT+AGG | - | tig0015258:2679-2698 | Msa1355950:intron | 20.0% |
| !! | TTACCTTAGCAAAAAAAATA+GGG | - | tig0015258:2680-2699 | Msa1355950:intron | 20.0% |
| !!! | ATTTGAACATTTTTGGAATA+TGG | - | tig0015258:2902-2921 | Msa1355950:CDS | 20.0% |
| !!! | TTTGAACATTTTTGGAATAT+GGG | - | tig0015258:2903-2922 | Msa1355950:CDS | 20.0% |
| ! | TCCAATTAAGATCGATATAA+TGG | - | tig0015258:42-61 | Msa1355950:CDS | 25.0% |
| ! | TCCATTATATCGATCTTAAT+TGG | + | tig0015258:46-65 | Msa1355950:intergenic | 25.0% |
| !!! | TCCAATAATTCTGAAATTCA+TGG | - | tig0015258:75-94 | Msa1355950:CDS | 25.0% |
| ! | ACCATGAATTTCAGAATTAT+TGG | + | tig0015258:79-98 | Msa1355950:intergenic | 25.0% |
| ! | AGTAATATTGTAGTGAAAGT+GGG | - | tig0015258:157-176 | Msa1355950:CDS | 25.0% |
| ! | GTGTGTGTAAATGTTAATTT+CGG | - | tig0015258:412-431 | Msa1355950:CDS | 25.0% |
| !! | ACATTTAATTTCCTTGAATC+TGG | - | tig0015258:459-478 | Msa1355950:CDS | 25.0% |
| ! | TAGAAGAGCTTAGAAATTTA+AGG | - | tig0015258:636-655 | Msa1355950:CDS | 25.0% |
| !! | GTGTAAATACTTTAAGGATA+TGG | + | tig0015258:685-704 | Msa1355950:intergenic | 25.0% |
| !!! | TTGTGAGTTTGCTTTTATTT+AGG | + | tig0015258:815-834 | Msa1355950:intergenic | 25.0% |
| ! | AATAATGTTGTAAAAGACGA+CGG | - | tig0015258:1017-1036 | Msa1355950:intron | 25.0% |
| ! | GATAGAAAAAACAATGTCAA+TGG | - | tig0015258:1129-1148 | Msa1355950:intron | 25.0% |
| !!! | TATCTTTTTTTCTCATCCAT+TGG | + | tig0015258:1196-1215 | Msa1355950:intergenic | 25.0% |
| !!! | TATCTTTTTTTCTCATCCAT+TGG | + | tig0015258:1196-1215 | Msa1355950:intergenic | 25.0% |
| !! | CATTCATCTCTCAATATTTT+AGG | + | tig0015258:1310-1329 | Msa1355950:intergenic | 25.0% |
| ! | CTAAAATATTGAGAGATGAA+TGG | - | tig0015258:1308-1327 | Msa1355950:intron | 25.0% |
| ! | GTATTTAGTATTTACCTTAC+GGG | - | tig0015258:1603-1622 | Msa1355950:intron | 25.0% |
| ! | TCTCGTTCAATTCAATTAAA+TGG | - | tig0015258:1675-1694 | Msa1355950:intron | 25.0% |
| ! | ATATTGTATTGTATTGTGTG+TGG | + | tig0015258:1981-2000 | Msa1355950:intergenic | 25.0% |
| ! | GCAAATATACAATGTTAATG+GGG | + | tig0015258:2164-2183 | Msa1355950:intergenic | 25.0% |
| ! | GGCAAATATACAATGTTAAT+GGG | + | tig0015258:2165-2184 | Msa1355950:intergenic | 25.0% |
| ! | AGGCAAATATACAATGTTAA+TGG | + | tig0015258:2166-2185 | Msa1355950:intergenic | 25.0% |
| ! | ACAAATTTCGTGATTCAATT+AGG | - | tig0015258:2289-2308 | Msa1355950:intron | 25.0% |
| ! | AACTATTGTCTACATAAATG+GGG | + | tig0015258:2471-2490 | Msa1355950:intergenic | 25.0% |
| ! | TGAAGAAAATTGGTTAAACA+TGG | + | tig0015258:2511-2530 | Msa1355950:intergenic | 25.0% |
| !!! | TAGATGATTTTAGAGTTAGA+TGG | - | tig0015258:2836-2855 | Msa1355950:CDS | 25.0% |
| !! | GACACAAATTTGAACATTTT+TGG | - | tig0015258:2895-2914 | Msa1355950:CDS | 25.0% |
| ! | ACTCTCATTGTAATCAAATT+TGG | + | tig0015258:2986-3005 | Msa1355950:intergenic | 25.0% |
| TGAAATTCATGGTTACTTGT+TGG | - | tig0015258:86-105 | Msa1355950:CDS | 30.0% | |
| !! | TTGGTGTCTAGTTAATCTTT+TGG | - | tig0015258:105-124 | Msa1355950:CDS | 30.0% |
| ! | TGGTGTCTAGTTAATCTTTT+GGG | - | tig0015258:106-125 | Msa1355950:CDS | 30.0% |
| GAGTAATATTGTAGTGAAAG+TGG | - | tig0015258:156-175 | Msa1355950:CDS | 30.0% | |
| GTAATTGATGTTAGCAGTAA+TGG | - | tig0015258:184-203 | Msa1355950:CDS | 30.0% | |
| CATTGTAGATTTGAAGACTT+AGG | + | tig0015258:905-924 | Msa1355950:intergenic | 30.0% | |
| ATAATGTTGTAAAAGACGAC+GGG | - | tig0015258:1018-1037 | Msa1355950:intron | 30.0% | |
| !!! | ATGGTTTTGGGTCATTATTT+TGG | + | tig0015258:1167-1186 | Msa1355950:intergenic | 30.0% |
| ! | CATTGGATATAGATGGTTTT+GGG | + | tig0015258:1179-1198 | Msa1355950:intergenic | 30.0% |
| ! | CATTGGATATAGATGGTTTT+GGG | + | tig0015258:1179-1198 | Msa1355950:intergenic | 30.0% |
| AAAAAGATAGAGATGAGTAG+AGG | - | tig0015258:1258-1277 | Msa1355950:intron | 30.0% | |
| AAAAGATAGAGATGAGTAGA+GGG | - | tig0015258:1259-1278 | Msa1355950:intron | 30.0% | |
| AAGAAAGAAACAGAAAACCA+TGG | - | tig0015258:1501-1520 | Msa1355950:intron | 30.0% | |
| ATACTAAATACACACGTCTT+TGG | + | tig0015258:1594-1613 | Msa1355950:intergenic | 30.0% | |
| CGTTCAATTCAATTAAATGG+CGG | - | tig0015258:1678-1697 | Msa1355950:intron | 30.0% | |
| AAATTTGTGATGAACAGCTT+TGG | - | tig0015258:2208-2227 | Msa1355950:intron | 30.0% | |
| TGTGATATTTGGAAGAAGTA+TGG | + | tig0015258:2382-2401 | Msa1355950:intergenic | 30.0% | |
| CTGAATCAGTTTGTGATATT+TGG | + | tig0015258:2393-2412 | Msa1355950:intergenic | 30.0% | |
| AGAGAAATTGCACTTAGATA+GGG | + | tig0015258:2553-2572 | Msa1355950:intergenic | 30.0% | |
| AAGAGAAATTGCACTTAGAT+AGG | + | tig0015258:2554-2573 | Msa1355950:intergenic | 30.0% | |
| ! | AAAAGTTTAGAGCCTAGAAT+TGG | + | tig0015258:2661-2680 | Msa1355950:intergenic | 30.0% |
| !!! | CATCCCTATTTTTTTTGCTA+AGG | + | tig0015258:2686-2705 | Msa1355950:intergenic | 30.0% |
| GAATAAATTAGCCATACCAT+CGG | + | tig0015258:2737-2756 | Msa1355950:intergenic | 30.0% | |
| !! | ATTCATTGAGTTTTGATGTG+AGG | - | tig0015258:2758-2777 | Msa1355950:CDS | 30.0% |
| !! | TTCATTGAGTTTTGATGTGA+GGG | - | tig0015258:2759-2778 | Msa1355950:CDS | 30.0% |
| ! | TCATCTAGTTTCTTTGTTCT+AGG | + | tig0015258:2823-2842 | Msa1355950:intergenic | 30.0% |
| AAATTTGTGTCAACAAGTGT+TGG | + | tig0015258:2886-2905 | Msa1355950:intergenic | 30.0% | |
| ! | TGTCTAGTTAATCTTTTGGG+TGG | - | tig0015258:109-128 | Msa1355950:CDS | 35.0% |
| ! | TTAGCAGTAATGGAACTGTT+GGG | - | tig0015258:194-213 | Msa1355950:CDS | 35.0% |
| TAGAATCCAACTCATCGTAA+GGG | - | tig0015258:285-304 | Msa1355950:CDS | 35.0% | |
| AGCCAGAGAGACAAAATAAA+GGG | + | tig0015258:367-386 | Msa1355950:intergenic | 35.0% | |
| TAGCCAGAGAGACAAAATAA+AGG | + | tig0015258:368-387 | Msa1355950:intergenic | 35.0% | |
| TTACACACACAGAGCATATA+TGG | + | tig0015258:402-421 | Msa1355950:intergenic | 35.0% | |
| TGTTAATTTCGGCATGCATA+TGG | - | tig0015258:423-442 | Msa1355950:CDS | 35.0% | |
| AAACTGCAAATCCAGATTCA+AGG | + | tig0015258:473-492 | Msa1355950:intergenic | 35.0% | |
| !! | TTAACTTGTTGCTGCGTTAA+AGG | - | tig0015258:525-544 | Msa1355950:CDS | 35.0% |
| TTCTATGTCGTTCTAGTGTT+TGG | + | tig0015258:992-1011 | Msa1355950:intergenic | 35.0% | |
| ! | CCATTGGATATAGATGGTTT+TGG | + | tig0015258:1180-1199 | Msa1355950:intergenic | 35.0% |
| CCAAAACCATCTATATCCAA+TGG | - | tig0015258:1177-1196 | Msa1355950:intron | 35.0% | |
| TCTCATCCATTGGATATAGA+TGG | + | tig0015258:1186-1205 | Msa1355950:intergenic | 35.0% | |
| ! | CCATTGGATATAGATGGTTT+TGG | + | tig0015258:1180-1199 | Msa1355950:intergenic | 35.0% |
| CCAAAACCATCTATATCCAA+TGG | - | tig0015258:1177-1196 | Msa1355950:intron | 35.0% | |
| TCTCATCCATTGGATATAGA+TGG | + | tig0015258:1186-1205 | Msa1355950:intergenic | 35.0% | |
| ! | AGTATTTACCTTACGGGTTA+CGG | - | tig0015258:1609-1628 | Msa1355950:intron | 35.0% |
| !! | CAGTGTTGATGTATGTCATA+AGG | - | tig0015258:2005-2024 | Msa1355950:intron | 35.0% |
| !!! | GGGACTCATTTTAAAACGAA+AGG | + | tig0015258:2144-2163 | Msa1355950:intergenic | 35.0% |
| GTTGCTGAAAAGGTTACAAT+GGG | + | tig0015258:2331-2350 | Msa1355950:intergenic | 35.0% | |
| TGTTGCTGAAAAGGTTACAA+TGG | + | tig0015258:2332-2351 | Msa1355950:intergenic | 35.0% | |
| ! | TTTGAAGTGATGCAAGTGAA+GGG | + | tig0015258:2357-2376 | Msa1355950:intergenic | 35.0% |
| !!! | GTAGACAATAGTTTTGGTGA+AGG | - | tig0015258:2478-2497 | Msa1355950:intron | 35.0% |
| GTAGGCATGTTGAAGAAAAT+TGG | + | tig0015258:2521-2540 | Msa1355950:intergenic | 35.0% | |
| TAGATAGGGAACTTGAATGT+AGG | + | tig0015258:2539-2558 | Msa1355950:intergenic | 35.0% | |
| ! | AAATACTCTAGTGGGTATAG+TGG | + | tig0015258:2623-2642 | Msa1355950:intergenic | 35.0% |
| TGCACAACAAATACTCTAGT+GGG | + | tig0015258:2631-2650 | Msa1355950:intergenic | 35.0% | |
| AAAATAGGGATGATGAGTCA+AGG | - | tig0015258:2694-2713 | Msa1355950:intron | 35.0% | |
| TATGTTTGGATAGTAACCGA+TGG | - | tig0015258:2718-2737 | Msa1355950:CDS | 35.0% | |
| ! | TTTTGATGTGAGGGAATCAA+TGG | - | tig0015258:2768-2787 | Msa1355950:CDS | 35.0% |
| TGCTACAATTGCATTAGCAA+TGG | - | tig0015258:2933-2952 | Msa1355950:CDS | 35.0% | |
| GCTATTGAGAAAGTTGGAAT+TGG | - | tig0015258:2955-2974 | Msa1355950:CDS | 35.0% | |
| ! | GTTAGCAGTAATGGAACTGT+TGG | - | tig0015258:193-212 | Msa1355950:CDS | 40.0% |
| AATGGAACTGTTGGGAAGAT+AGG | - | tig0015258:202-221 | Msa1355950:CDS | 40.0% | |
| ! | CGATGAGTTGGATTCTAGTT+TGG | + | tig0015258:282-301 | Msa1355950:intergenic | 40.0% |
| CTAGAATCCAACTCATCGTA+AGG | - | tig0015258:284-303 | Msa1355950:CDS | 40.0% | |
| TCATCGTAAGGGATTCTCAT+AGG | - | tig0015258:296-315 | Msa1355950:CDS | 40.0% | |
| CATCGTAAGGGATTCTCATA+GGG | - | tig0015258:297-316 | Msa1355950:CDS | 40.0% | |
| !!! | ACCCCTTTATTTTGTCTCTC+TGG | - | tig0015258:362-381 | Msa1355950:CDS | 40.0% |
| GCCAGAGAGACAAAATAAAG+GGG | + | tig0015258:366-385 | Msa1355950:intergenic | 40.0% | |
| ACAATGTCAATGGGTGATTG+TGG | - | tig0015258:1139-1158 | Msa1355950:intron | 40.0% | |
| AGTAGAGGGAATATTGAGAG+AGG | - | tig0015258:1273-1292 | Msa1355950:intron | 40.0% | |
| GTAGAGGGAATATTGAGAGA+GGG | - | tig0015258:1274-1293 | Msa1355950:intron | 40.0% | |
| TAGAGGGAATATTGAGAGAG+GGG | - | tig0015258:1275-1294 | Msa1355950:intron | 40.0% | |
| TCGACATATCTCGTTCAACT+GGG | + | tig0015258:1529-1548 | Msa1355950:intergenic | 40.0% | |
| TTGTCGTCTACTAGCTACTA+AGG | - | tig0015258:1638-1657 | Msa1355950:intron | 40.0% | |
| TGGAACTCGTCAACAACATA+AGG | + | tig0015258:1961-1980 | Msa1355950:intergenic | 40.0% | |
| ! | AAGAAGTGCAAGCCATCATA+TGG | - | tig0015258:2246-2265 | Msa1355950:intron | 40.0% |
| ! | AGAAGTGCAAGCCATCATAT+GGG | - | tig0015258:2247-2266 | Msa1355950:intron | 40.0% |
| ! | TTGTTATTGGCCCCATATGA+TGG | + | tig0015258:2261-2280 | Msa1355950:intergenic | 40.0% |
| !! | CTTTGAAGTGATGCAAGTGA+AGG | + | tig0015258:2358-2377 | Msa1355950:intergenic | 40.0% |
| !! | ACCTCAACTATCCTAGCTTT+TGG | - | tig0015258:2430-2449 | Msa1355950:intron | 40.0% |
| TCCAAAAGCTAGGATAGTTG+AGG | + | tig0015258:2434-2453 | Msa1355950:intergenic | 40.0% | |
| !! | CAACTATCCTAGCTTTTGGA+TGG | - | tig0015258:2434-2453 | Msa1355950:intron | 40.0% |
| CTTGTTTCCATCCAAAAGCT+AGG | + | tig0015258:2444-2463 | Msa1355950:intergenic | 40.0% | |
| ! | AGCTTTTGGATGGAAACAAG+TGG | - | tig0015258:2444-2463 | Msa1355950:intron | 40.0% |
| TTGAGTGATAGCATCATCTG+TGG | + | tig0015258:2581-2600 | Msa1355950:intergenic | 40.0% | |
| GTGCACAACAAATACTCTAG+TGG | + | tig0015258:2632-2651 | Msa1355950:intergenic | 40.0% | |
| TGATGAGTCAAGGCTATGTT+TGG | - | tig0015258:2704-2723 | Msa1355950:CDS | 40.0% | |
| TTGGATAGTAACCGATGGTA+TGG | - | tig0015258:2723-2742 | Msa1355950:CDS | 40.0% | |
| !! | GAATCAATGGAAGGAGTGTT+GGG | - | tig0015258:2781-2800 | Msa1355950:CDS | 40.0% |
| GCAATGGCTATTGAGAAAGT+TGG | - | tig0015258:2949-2968 | Msa1355950:CDS | 40.0% | |
| GAGAATCCCTTACGATGAGT+TGG | + | tig0015258:294-313 | Msa1355950:intergenic | 45.0% | |
| AGAGGGAATATTGAGAGAGG+GGG | - | tig0015258:1276-1295 | Msa1355950:intron | 45.0% | |
| AATATTGAGAGAGGGGGCTA+GGG | - | tig0015258:1282-1301 | Msa1355950:intron | 45.0% | |
| CGACATATCTCGTTCAACTG+GGG | + | tig0015258:1528-1547 | Msa1355950:intergenic | 45.0% | |
| CTCGACATATCTCGTTCAAC+TGG | + | tig0015258:1530-1549 | Msa1355950:intergenic | 45.0% | |
| GAAGTGCAAGCCATCATATG+GGG | - | tig0015258:2248-2267 | Msa1355950:intron | 45.0% | |
| !! | TGAAGGGCTTGTTGCTGAAA+AGG | + | tig0015258:2341-2360 | Msa1355950:intergenic | 45.0% |
| AGCTAGGATAGTTGAGGTGA+TGG | + | tig0015258:2428-2447 | Msa1355950:intergenic | 45.0% | |
| GTGCACATGTCACCAATTCT+AGG | - | tig0015258:2646-2665 | Msa1355950:intron | 45.0% | |
| GATGTGAGGGAATCAATGGA+AGG | - | tig0015258:2772-2791 | Msa1355950:CDS | 45.0% | |
| ! | GGAATCAATGGAAGGAGTGT+TGG | - | tig0015258:2780-2799 | Msa1355950:CDS | 45.0% |
| !!! | CTTTTATTTTTAAAATATTT+GGG | + | tig0015258:1484-1503 | Msa1355950:intergenic | 5.0% |
| !!! | TCTTTTATTTTTAAAATATT+TGG | + | tig0015258:1485-1504 | Msa1355950:intergenic | 5.0% |
| GAATATTGAGAGAGGGGGCT+AGG | - | tig0015258:1281-1300 | Msa1355950:intron | 50.0% | |
| CATGCAGGTTACTCGTATGG+CGG | + | tig0015258:1568-1587 | Msa1355950:intergenic | 50.0% | |
| CTGCATGCAGGTTACTCGTA+TGG | + | tig0015258:1571-1590 | Msa1355950:intergenic | 50.0% | |
| !! | AAGAAGTGCCGTAACCCGTA+AGG | + | tig0015258:1620-1639 | Msa1355950:intergenic | 50.0% |
| !! | TGGAAGGAGTGTTGGGTGTT+AGG | - | tig0015258:2788-2807 | Msa1355950:CDS | 50.0% |
| TCTCGTTCAACTGGGGTCCA+TGG | + | tig0015258:1521-1540 | Msa1355950:intergenic | 55.0% | |
| ACACGTCTTTGGCTGCATGC+AGG | + | tig0015258:1583-1602 | Msa1355950:intergenic | 55.0% | |
| GTCGTCACTGCAGCTGCACA+CGG | - | tig0015258:322-341 | Msa1355950:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015258 | gene | 28 | 3014 | 28 | ID=Msa1355950;Name=Msa1355950 |
| tig0015258 | mRNA | 28 | 3014 | 28 | ID=Msa1355950-mRNA-1;Parent=Msa1355950;Name=Msa1355950-mRNA-1;_AED=0.38;_eAED=0.38;_QI=33|0|0.5|1|1|1|2|0|329 |
| tig0015258 | exon | 28 | 731 | 28 | ID=Msa1355950-mRNA-1:exon:9666;Parent=Msa1355950-mRNA-1 |
| tig0015258 | exon | 2699 | 3014 | 2699 | ID=Msa1355950-mRNA-1:exon:9665;Parent=Msa1355950-mRNA-1 |
| tig0015258 | five_prime_UTR | 2982 | 3014 | 2982 | ID=Msa1355950-mRNA-1:five_prime_utr;Parent=Msa1355950-mRNA-1 |
| tig0015258 | CDS | 2699 | 2981 | 2699 | ID=Msa1355950-mRNA-1:cds;Parent=Msa1355950-mRNA-1 |
| tig0015258 | CDS | 28 | 731 | 28 | ID=Msa1355950-mRNA-1:cds;Parent=Msa1355950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
