AlfalfaGEDB | Msa0903400

M. sativa cultivar zhongmu-4 / Msa0903400

KEGG: -
GO: GO:0000372 GO:0000373 GO:0000375 GO:0000376 GO:0000377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF01985.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903400	XP_039690846.1	94.106	1001	55	2	1	1000	1	998	0.0	1797

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903400	sp\|Q8L7C2\|CFM2_ARATH	51.115	1031	415	19	18	999	21	1011	0.0	951

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044710	Msa0903400	0.810828	9.491776e-51	-8.615850e-47
Msa0050720	Msa0903400	0.805627	1.218184e-49	-8.615850e-47
Msa0061150	Msa0903400	0.814267	1.680803e-51	-8.615850e-47
Msa0105700	Msa0903400	0.814160	1.774836e-51	-8.615850e-47
Msa0111310	Msa0903400	0.807426	5.083870e-50	-8.615850e-47
Msa0142420	Msa0903400	0.816771	4.658157e-52	-8.615850e-47
Msa0152170	Msa0903400	0.808536	2.951313e-50	-8.615850e-47
Msa0307470	Msa0903400	0.800954	1.131235e-48	-8.615850e-47
Msa0344830	Msa0903400	0.809709	1.655119e-50	-8.615850e-47
Msa0347610	Msa0903400	0.800630	1.316720e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903400	MtrunA17_Chr6g0451621	89.885	1048	55	3	1	1000	1	1045	0.0	1777
Msa0903400	MtrunA17_Chr1g0187011	39.744	780	373	18	4	717	42	790	3.94e-164	503
Msa0903400	MtrunA17_Chr4g0071101	43.089	615	304	6	110	698	135	729	1.36e-148	459
Msa0903400	MtrunA17_Chr6g0484411	42.088	613	307	9	135	721	194	784	1.75e-144	451
Msa0903400	MtrunA17_Chr8g0391141	36.788	685	329	14	13	679	5	603	2.48e-127	400
Msa0903400	MtrunA17_Chr2g0330811	38.836	636	328	11	118	706	123	744	2.93e-122	390
Msa0903400	MtrunA17_Chr8g0366041	38.298	235	130	3	165	398	1	221	1.95e-46	166
Msa0903400	MtrunA17_Chr4g0067911	36.181	199	121	3	511	706	149	344	9.81e-26	109
Msa0903400	MtrunA17_Chr4g0033621	37.423	163	96	3	539	699	151	309	1.46e-22	102
Msa0903400	MtrunA17_Chr1g0171521	38.255	149	84	4	526	669	123	268	2.07e-22	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903400	AT3G01370.1	51.115	1031	415	19	18	999	21	1011	0.0	951
Msa0903400	AT3G18390.1	44.332	591	287	7	140	706	229	801	8.68e-160	493
Msa0903400	AT4G14510.1	42.357	628	286	10	148	717	216	825	7.01e-150	468
Msa0903400	AT3G23070.1	40.113	708	370	10	46	721	117	802	6.06e-145	454
Msa0903400	AT4G29750.1	41.842	619	297	10	143	728	233	821	2.78e-143	449
Msa0903400	AT4G29750.2	42.857	581	274	8	143	695	233	783	7.49e-143	447
Msa0903400	AT5G16180.1	42.787	409	210	6	321	705	311	719	5.20e-90	303
Msa0903400	AT5G16180.2	54.305	151	69	0	321	471	311	461	4.51e-50	186
Msa0903400	AT4G13070.1	41.935	155	75	5	524	670	144	291	1.88e-23	103
Msa0903400	AT2G28480.1	36.957	184	107	4	518	699	124	300	3.45e-22	100

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Find 275 sgRNAs with CRISPR-Local

Find 656 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGTTTCCTTCTAGTT+TGG	0.344818	6_2:-494653	Msa0903400:CDS
AAACTCAATTCCGCTAAAGT+CGG	0.604156	6_2:+502204	None:intergenic
AAACTGGAGGACTTGTTGTT+TGG	0.357673	6_2:-500471	Msa0903400:CDS
AAAGTCACCTAGCAACAAGA+AGG	0.528235	6_2:+498077	None:intergenic
AAAGTGCAGCCAACAGAAAT+TGG	0.326941	6_2:-493149	Msa0903400:three_prime_UTR
AAATAGGAAACTTCAAGGAG+TGG	0.617096	6_2:-499642	Msa0903400:CDS
AAATCATACTTTACAGGGGT+TGG	0.420723	6_2:-493520	Msa0903400:CDS
AAATGAAAAGGGAAGAAGAA+TGG	0.521022	6_2:+502594	None:intergenic
AAATGAATTGAAACATCAAA+TGG	0.509714	6_2:-496290	Msa0903400:intron
AAATGTGTTGAAGAAGAAAA+TGG	0.320801	6_2:-493214	Msa0903400:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAACATTTCATGGATAA+TGG	+	chr6_2:492935-492954	None:intergenic	30.0%
AAATGAAAAGGGAAGAAGAA+TGG	+	chr6_2:492997-493016	None:intergenic	30.0%
TGCGAATAGTGAATTTAGAA+GGG	+	chr6_2:493029-493048	None:intergenic	30.0%
TGAAATGAAGCAGAAGATTA+AGG	-	chr6_2:493446-493465	Msa0903400:CDS	30.0%
TTAATGGAATTCATGAACGT+TGG	-	chr6_2:493499-493518	Msa0903400:CDS	30.0%
ATAAGCATGTGAGAAAATGA+CGG	-	chr6_2:494043-494062	Msa0903400:intron	30.0%
AACAAAAAAAAAGACCCGTT+TGG	+	chr6_2:494072-494091	None:intergenic	30.0%
GGTATCATATATATCTGTGT+TGG	-	chr6_2:494356-494375	Msa0903400:CDS	30.0%
TATATATCTGTGTTGGAAGT+AGG	-	chr6_2:494363-494382	Msa0903400:CDS	30.0%
TTTCATTTCAGACATGAATC+TGG	+	chr6_2:494392-494411	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	492914	502696	492914	ID=Msa0903400;Name=Msa0903400
chr6_2	mRNA	492914	502696	492914	ID=Msa0903400-mRNA-1;Parent=Msa0903400;Name=Msa0903400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=32\|1\|1\|1\|1\|1\|13\|483\|1000
chr6_2	exon	492914	493582	492914	ID=Msa0903400-mRNA-1:exon:284;Parent=Msa0903400-mRNA-1
chr6_2	exon	493700	493830	493700	ID=Msa0903400-mRNA-1:exon:283;Parent=Msa0903400-mRNA-1
chr6_2	exon	494264	494492	494264	ID=Msa0903400-mRNA-1:exon:282;Parent=Msa0903400-mRNA-1
chr6_2	exon	494636	494803	494636	ID=Msa0903400-mRNA-1:exon:281;Parent=Msa0903400-mRNA-1
chr6_2	exon	494959	495099	494959	ID=Msa0903400-mRNA-1:exon:280;Parent=Msa0903400-mRNA-1
chr6_2	exon	496153	496206	496153	ID=Msa0903400-mRNA-1:exon:279;Parent=Msa0903400-mRNA-1
chr6_2	exon	496291	496350	496291	ID=Msa0903400-mRNA-1:exon:278;Parent=Msa0903400-mRNA-1
chr6_2	exon	497646	497938	497646	ID=Msa0903400-mRNA-1:exon:277;Parent=Msa0903400-mRNA-1
chr6_2	exon	498085	498241	498085	ID=Msa0903400-mRNA-1:exon:276;Parent=Msa0903400-mRNA-1
chr6_2	exon	498323	498598	498323	ID=Msa0903400-mRNA-1:exon:275;Parent=Msa0903400-mRNA-1
chr6_2	exon	499538	499668	499538	ID=Msa0903400-mRNA-1:exon:274;Parent=Msa0903400-mRNA-1
chr6_2	exon	499975	500497	499975	ID=Msa0903400-mRNA-1:exon:273;Parent=Msa0903400-mRNA-1
chr6_2	exon	502011	502696	502011	ID=Msa0903400-mRNA-1:exon:272;Parent=Msa0903400-mRNA-1
chr6_2	five_prime_UTR	502665	502696	502665	ID=Msa0903400-mRNA-1:five_prime_utr;Parent=Msa0903400-mRNA-1
chr6_2	CDS	502011	502664	502011	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	499975	500497	499975	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	499538	499668	499538	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	498323	498598	498323	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	498085	498241	498085	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	497646	497938	497646	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	496291	496350	496291	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	496153	496206	496153	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	494959	495099	494959	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	494636	494803	494636	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	494264	494492	494264	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	493700	493830	493700	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	CDS	493397	493582	493397	ID=Msa0903400-mRNA-1:cds;Parent=Msa0903400-mRNA-1
chr6_2	three_prime_UTR	492914	493396	492914	ID=Msa0903400-mRNA-1:three_prime_utr;Parent=Msa0903400-mRNA-1

Gene Sequence

>Msa0903400

ATGTTGCTTCCAACGACTAACTTCAACACCTTCTTCACTCCTTCTTCTCCATTCTTCTTCCCTTTTCATTTCCCCAAAACCCCTTCTAAATTCACTATTCGCACCTCCTCTTCTAATTCCCACACCCTCCCTGATTCCGCCATTCAACGCATCGCCGATAAACTCCATTCCCTCGGCATCACCACCACCACCACCGACCAATCCTCTTCCTCTTCTTCTTCCTCCACAACCTCCACCACCTCCGCCGGTGAAATCTTCCTTCCATTACCACACACACTCCCAAAACACCGCGTCGGTCACACACTCGACCTCAGCTGGAGCACACCGGAGAATCCAGTTCCTCTAGTTGGCGCAGGACTCGAAAAATTGAGCGAGAATGAAGTTGAGAGAGCGCGATTGGCGAAGGAGAAGGAGAGGAAGGAGAAGAGGAAGAGAGTACCGACTTTAGCGGAATTGAGTTTGACGGATGGAGAGATATTGAGGTTGAGGGAATTAGGGTTTGAAATGAAGCAGAAGATTAAGGTTGGAAAAGCCGGTGTAACGGAAGGGATTGTTAATGGAATTCATGAACGTTGGCGAAGATCGGAAGTTGTTAGGGTTGTTTGTGAGGATCTTTGTAGGATTAATATGAAAAGGACTCATGATATTTTGGAGAGAAAAACTGGAGGACTTGTTGTTTGGAGATCTGGAAGTAAAATAATATTGTACAGAGGGATTGATTATAAGTATCCTTACTTCCTATCAGATGAAGTTTTGAGAGAAGAAAAAAGTGCTTTGCAACATATGGACAGTGATGATGAAAATATTGATGAAAGAGAGACCCATTCATCTGAAATGAGTTCAGCCACACATGCTGGACAAAGTTCAAACATCAAAACCGTAAAACCAGCTTTGGTACAAGGAGTCGGTACTCCCAATAGAGTGAGATTTCAACTGCCAGGTGAAGCAGAGCTTTTAGAAGAAGTAGACAGCTTGTTAGAGGGTCTTGGGCCTCGATTTACGGATTGGTGGGGGTATGACCCTGTGCCTGTTGATGCTGATCTTCTACCTGCCGTTATTCCTGGATTTAGGCCGCCTTTTCGCCTACTTCCATATGGTGTGCAGTCTAAGCTAACGGATGATGAAATGACCACATTGAAGAGACTTGGCAGACATTTACCATGCCATTTTGCATTGGGTAGAAATAGGAAACTTCAAGGAGTGGCTGCTGCAATTATCAAGTTCTGGGAAAGATGTGAGATTGTCAATATTGCAGTAAAAAGAGGTGTGCAGAATACTAGCAATAAGAAAATGGCTGAAGAGATTAAGTATCTGACTGGAGGAACTCTCCTTTCTCGGAATAAAGAAGTTATTGTCATTTATAGAGGAAAGGACTTCTTACCTGCTGCAGTTTCTTCAGCAATTAAACAGAGATGGAAAGCTGTAAAAAATACAGTAAATGCTGAAAACAGATCAGCAGTTACAGCTTCTTCAGATTCTGAAAGAAAGCATATGGCATTCATTAAAGATAAAGAAGCCATTGAAAAACCATTATTGATGAAGGCTAAAGCAGCTATTCAAAGGACTAGCATCAAATTGGCACAGGCACTAGAGAAGAAAGAGAAAGCTGAAAAACTTCTAGAAAGTCTGGAAAAAGACGAGAGTCTTCAAGAACAAGAAATAGATAAAGAGGGTATTACTGAAGAAGAGAGATACATGTTGCGGAGAATTGGCTTGAAGATGAAGCCCTTCTTGTTGCTAGGAAGACGAGGGGTTTTTGATGGGACAGTGGAAAATATGCATCTTCATTGGAAATATCGGGAACTTGTGAAGATAATATGTAATCAAGAAAGTGTGGAATATGCCCACCAGACAGCTCGGACCTTAGAGACAGAAAGTGGTGGAATATTAGTAGCAGTAGAGAGAGTGCACAAGGGCTATGCGATCATTGTTTATCGTGGAAAGAATTATAGTAGGCCTGATAGTTTGAGGCCGCGAACACTTCTAAATAAAAAGCAAGCATTGAAGCGTTCAATAGAGGCACAACGCCGTGAGGCGTTGAAGCTTCATGTTTTGAAGTTAGACAAGAACATAAATGAATTGAAACATCAAATGGTTAAAGATGAGACTAGCAGTGAGCAGATAGCTAAAGAGTTGAGATTGGACTTGGCTACAGAAAATTCTCCAGAAGAAGCTTCTGTTGACACTCAACAACCTATACAAGAGCAGCACATGGAGCTGATTGGTAGTGGTGGAGAATGTCAAGGTGAACCAGAATCCTTGACTGGTTTGGTTCATCAAGAAAGACAGTTGGATGAAGTGAATGATTTTGTGGTTGATACTGGGCACGGTGTTTCTACTTACAAAGCAAGTGAAGGATCAATCATATCATTCCAATGTGATCTGGAACCATCAGCTCCTGTGATAAATGAGAATTCAAACGAGTTTCCTTCTAGTTTGGTTCATCCAAAAAGACAGTTGGATGAAGTGAGTGATTCTGTGGTTGATACTGGGCATAGTGTCTCAACTAACAATGCTATGGAAGCATCGATCACATCATTTAAAAGGGATCCTGAACCATCAGCTCCGGTGATAAATAAGAGTTCAATTGAGTTTTCTTCTAGATCTTCATCTCTTTCCAATAGAGAGAGACTTCTTCTTCGAAAGCAGGCCTTAAGGATGAAAAAGCAACCTATCGTTCCCATAGGAAAGAGCAATATTGTGACTGGTGTTGTGGAAACAATCAAGGATCTTTTGCGGAAGCACCCTTTTGTCATAGTTAATGTCAAAGGAAGGGCAAAAGGGACCTCAGTTCATGAGTTGGTTTCCATACTAGAGGAAGAAACAGGTGCAGTTCTAGTCTCTCAGGAGCCTAGCAAAATCATACTTTACAGGGGTTGGGGGGCGGGAACGCAACATCACACCAACTCAATTCATAGGAGAGTAGCTAAATACGGAGGAGCAAAGCCCAATGTCTCTCCCGAGCTGTTGGAAGCTATCAGAATTGAATGTGGAATGCAGTAA

Protein sequence

>Msa0903400

MLLPTTNFNTFFTPSSPFFFPFHFPKTPSKFTIRTSSSNSHTLPDSAIQRIADKLHSLGITTTTTDQSSSSSSSSTTSTTSAGEIFLPLPHTLPKHRVGHTLDLSWSTPENPVPLVGAGLEKLSENEVERARLAKEKERKEKRKRVPTLAELSLTDGEILRLRELGFEMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDEVLREEKSALQHMDSDDENIDERETHSSEMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGEAELLEEVDSLLEGLGPRFTDWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRHLPCHFALGRNRKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNKKMAEEIKYLTGGTLLSRNKEVIVIYRGKDFLPAAVSSAIKQRWKAVKNTVNAENRSAVTASSDSERKHMAFIKDKEAIEKPLLMKAKAAIQRTSIKLAQALEKKEKAEKLLESLEKDESLQEQEIDKEGITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQTARTLETESGGILVAVERVHKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIEAQRREALKLHVLKLDKNINELKHQMVKDETSSEQIAKELRLDLATENSPEEASVDTQQPIQEQHMELIGSGGECQGEPESLTGLVHQERQLDEVNDFVVDTGHGVSTYKASEGSIISFQCDLEPSAPVINENSNEFPSSLVHPKRQLDEVSDSVVDTGHSVSTNNAMEASITSFKRDPEPSAPVINKSSIEFSSRSSSLSNRERLLLRKQALRMKKQPIVPIGKSNIVTGVVETIKDLLRKHPFVIVNVKGRAKGTSVHELVSILEEETGAVLVSQEPSKIILYRGWGAGTQHHTNSIHRRVAKYGGAKPNVSPELLEAIRIECGMQ*