AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520220 MtrunA17_Chr3g0136611 72.444 225 31 4 1 194 710 934 8.57e-99 308
Msa0520220 MtrunA17_Chr3g0136621 60.965 228 55 5 1 194 713 940 2.10e-80 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520220 AT2G29110.1 39.130 207 89 7 3 178 686 886 1.08e-28 113
Msa0520220 AT2G29110.2 39.130 207 89 7 3 178 687 887 1.13e-28 113
Msa0520220 AT2G29120.1 35.600 250 120 9 2 216 690 933 1.99e-28 112
Msa0520220 AT2G29100.1 35.238 210 104 7 3 182 675 882 5.84e-25 102
Msa0520220 AT2G29100.2 35.238 210 104 7 3 182 677 884 5.95e-25 102

Find 35 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTGGACTTGAAAGCTTT+TGG 0.195866 3_4:+72706252 Msa0520220:CDS
ATCCTTACTATGAATGTCTT+TGG 0.228276 3_4:-72707440 Msa0520230:intron
CAAAGATTACGAGTGCTAAT+AGG 0.237260 3_4:-72706304 None:intergenic
CCCTATATTAAGCACTTTCT+TGG 0.239631 3_4:+72705667 Msa0520220:CDS
TGTCTCCTTGAGTCACATTT+AGG 0.245754 3_4:-72706151 None:intergenic
TATTGAAGTACTTGGACTAT+TGG 0.263429 3_4:-72706366 None:intergenic
AGTCCTCATCATGATGATTT+AGG 0.305156 3_4:+72706485 Msa0520220:CDS
AGATTTAAAACTGGTGGCTT+TGG 0.326155 3_4:+72705727 Msa0520220:CDS
CGTCTCCATATTGAAGTACT+TGG 0.331856 3_4:-72706374 None:intergenic
ATTGAAGTACTTGGACTATT+GGG 0.335080 3_4:-72706365 None:intergenic
TCCAAGAAAGTGCTTAATAT+AGG 0.347975 3_4:-72705668 None:intergenic
AAAGATTACGAGTGCTAATA+GGG 0.352188 3_4:-72706303 None:intergenic
CCAAGAAAGTGCTTAATATA+GGG 0.362025 3_4:-72705667 None:intergenic
TCCTTACTATGAATGTCTTT+GGG 0.371994 3_4:-72707439 Msa0520230:intron
AAATGTGTTTGTGTTGATAT+AGG 0.376139 3_4:-72706337 None:intergenic
TATATCAACACAAACACATT+TGG 0.390638 3_4:+72706339 Msa0520220:CDS
GGTGCAGTTGAGGCCTCTCC+AGG 0.420692 3_4:+72706506 Msa0520220:CDS
GTTGAACCAAGATTTAAAAC+TGG 0.428995 3_4:+72705718 Msa0520220:CDS
ATAGTCCAAGTACTTCAATA+TGG 0.433958 3_4:+72706369 Msa0520220:CDS
TCATCTTATTCTTTAGAAGT+TGG 0.441150 3_4:-72705486 None:intergenic
AAGTCCAAGACTGTTATTTG+AGG 0.455461 3_4:-72706240 None:intergenic
ATTTCCTCAAATAACAGTCT+TGG 0.466717 3_4:+72706236 Msa0520220:CDS
ATGGAGACGAATTCGCGTCT+TGG 0.498921 3_4:+72706388 Msa0520220:CDS
TGGTGTACGTCTGTAATAGC+TGG 0.533257 3_4:-72705466 None:intergenic
TCTTGACAGTTGAACAACTA+AGG 0.538252 3_4:+72705443 Msa0520220:five_prime_UTR
TGAAAACAATTGAGAATGCA+TGG 0.541520 3_4:+72706177 Msa0520220:CDS
GAACCAAGATTTAAAACTGG+TGG 0.563610 3_4:+72705721 Msa0520220:CDS
TGATGATTTAGGTGCAGTTG+AGG 0.570409 3_4:+72706496 Msa0520220:CDS
CTAAAGAATAAGATGAATGT+CGG 0.571534 3_4:+72705493 Msa0520220:exon
TAGTTGTTCAAAGTATGTCA+TGG 0.581001 3_4:+72705696 Msa0520220:CDS
TCTCACACATTCAAGAAGAG+TGG 0.586440 3_4:+72706440 Msa0520220:CDS
ATGAATGTCGGCTATCTCAA+AGG 0.594170 3_4:+72705505 Msa0520220:CDS
GCAATCCTAAATGTGACTCA+AGG 0.617571 3_4:+72706146 Msa0520220:CDS
TGGACAATGTGTACCTGGAG+AGG 0.642774 3_4:-72706519 None:intergenic
GCACCTAAATCATCATGATG+AGG 0.648662 3_4:-72706488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAATAAGATCAAAA+TGG + chr3_4:72705821-72705840 Msa0520220:intron 10.0%
!!! TTTTAAAAATAAGATCAAAA+TGG + chr3_4:72705821-72705840 Msa0520220:intron 10.0%
!!! CAATGATAATATTGTTATTA+GGG - chr3_4:72705787-72705806 None:intergenic 15.0%
!!! CAATGATAATATTGTTATTA+GGG - chr3_4:72705787-72705806 None:intergenic 15.0%
!!! TTTTGTTTATGGAATTTTGA+AGG + chr3_4:72705531-72705550 Msa0520220:CDS 20.0%
!!! TGTAATGAGCTTTTTATAAA+AGG + chr3_4:72705604-72705623 Msa0520220:CDS 20.0%
!!! TTTATAAAAGGAAGTGTAAA+TGG + chr3_4:72705616-72705635 Msa0520220:intron 20.0%
!!! GCAATGATAATATTGTTATT+AGG - chr3_4:72705788-72705807 None:intergenic 20.0%
!!! TTTTTAAAACATTGATCAGA+AGG - chr3_4:72705810-72705829 None:intergenic 20.0%
!!! GATCAGTTTTTTTAAAACAT+TGG + chr3_4:72706041-72706060 Msa0520220:intron 20.0%
!! CTTGAATCAATACAATTATT+AGG - chr3_4:72706713-72706732 None:intergenic 20.0%
!!! TTTTGGTAAAGTAAATTCTT+GGG - chr3_4:72706845-72706864 None:intergenic 20.0%
!!! TTTTTGGTAAAGTAAATTCT+TGG - chr3_4:72706846-72706865 None:intergenic 20.0%
!!! TTTTGTTTATGGAATTTTGA+AGG + chr3_4:72705531-72705550 Msa0520220:CDS 20.0%
!!! TGTAATGAGCTTTTTATAAA+AGG + chr3_4:72705604-72705623 Msa0520220:CDS 20.0%
!!! TTTATAAAAGGAAGTGTAAA+TGG + chr3_4:72705616-72705635 Msa0520220:intron 20.0%
!!! GCAATGATAATATTGTTATT+AGG - chr3_4:72705788-72705807 None:intergenic 20.0%
!!! TTTTTAAAACATTGATCAGA+AGG - chr3_4:72705810-72705829 None:intergenic 20.0%
!!! GATCAGTTTTTTTAAAACAT+TGG + chr3_4:72706041-72706060 Msa0520220:intron 20.0%
!! CTTGAATCAATACAATTATT+AGG - chr3_4:72706713-72706732 None:intergenic 20.0%
!!! TTTTGGTAAAGTAAATTCTT+GGG - chr3_4:72706845-72706864 None:intergenic 20.0%
!!! TTTTTGGTAAAGTAAATTCT+TGG - chr3_4:72706846-72706865 None:intergenic 20.0%
!! TCATCTTATTCTTTAGAAGT+TGG - chr3_4:72705489-72705508 None:intergenic 25.0%
! CTAAAGAATAAGATGAATGT+CGG + chr3_4:72705493-72705512 Msa0520220:exon 25.0%
! AAAAATAAGATCAAAATGGC+TGG + chr3_4:72705825-72705844 Msa0520220:intron 25.0%
!! AAATGTGTTTGTGTTGATAT+AGG - chr3_4:72706340-72706359 None:intergenic 25.0%
! TATATCAACACAAACACATT+TGG + chr3_4:72706339-72706358 Msa0520220:CDS 25.0%
! TTTGATTCAGTTTGACTAAA+TGG - chr3_4:72706551-72706570 None:intergenic 25.0%
! TGTTGTACAAATTACTAATC+AGG + chr3_4:72706613-72706632 Msa0520220:intron 25.0%
! AGCAACAAAGATATAGAAAT+TGG + chr3_4:72706758-72706777 Msa0520220:intron 25.0%
! TATATACAATACCAAAGAGA+GGG - chr3_4:72706784-72706803 None:intergenic 25.0%
! ATATATACAATACCAAAGAG+AGG - chr3_4:72706785-72706804 None:intergenic 25.0%
!! TCTGATGATAGCATAATTTT+TGG - chr3_4:72706862-72706881 None:intergenic 25.0%
! AAATGTGTAGAGATATAATG+AGG - chr3_4:72706891-72706910 None:intergenic 25.0%
! TTAATCTACACTAGTTAAGT+TGG - chr3_4:72707018-72707037 None:intergenic 25.0%
!! TATAAATACTGCCTTGATTT+TGG - chr3_4:72707121-72707140 None:intergenic 25.0%
! TGTTGCATATAAGAGAATTA+AGG - chr3_4:72707241-72707260 None:intergenic 25.0%
! TATGCAACAAGAAATTACAA+AGG + chr3_4:72707252-72707271 Msa0520220:intron 25.0%
! AGTGTATTGAACAATACTTA+AGG - chr3_4:72707286-72707305 Msa0520230:CDS 25.0%
!! TCATCTTATTCTTTAGAAGT+TGG - chr3_4:72705489-72705508 None:intergenic 25.0%
! CTAAAGAATAAGATGAATGT+CGG + chr3_4:72705493-72705512 Msa0520220:exon 25.0%
! AAAAATAAGATCAAAATGGC+TGG + chr3_4:72705825-72705844 Msa0520220:intron 25.0%
!! AAATGTGTTTGTGTTGATAT+AGG - chr3_4:72706340-72706359 None:intergenic 25.0%
! TATATCAACACAAACACATT+TGG + chr3_4:72706339-72706358 Msa0520220:CDS 25.0%
! TTTGATTCAGTTTGACTAAA+TGG - chr3_4:72706551-72706570 None:intergenic 25.0%
! TGTTGTACAAATTACTAATC+AGG + chr3_4:72706613-72706632 Msa0520220:intron 25.0%
! AGCAACAAAGATATAGAAAT+TGG + chr3_4:72706758-72706777 Msa0520220:intron 25.0%
! TATATACAATACCAAAGAGA+GGG - chr3_4:72706784-72706803 None:intergenic 25.0%
! ATATATACAATACCAAAGAG+AGG - chr3_4:72706785-72706804 None:intergenic 25.0%
!! TCTGATGATAGCATAATTTT+TGG - chr3_4:72706862-72706881 None:intergenic 25.0%
! AAATGTGTAGAGATATAATG+AGG - chr3_4:72706891-72706910 None:intergenic 25.0%
! TTAATCTACACTAGTTAAGT+TGG - chr3_4:72707018-72707037 None:intergenic 25.0%
!! TATAAATACTGCCTTGATTT+TGG - chr3_4:72707121-72707140 None:intergenic 25.0%
! TGTTGCATATAAGAGAATTA+AGG - chr3_4:72707241-72707260 None:intergenic 25.0%
! TATGCAACAAGAAATTACAA+AGG + chr3_4:72707252-72707271 Msa0520220:intron 25.0%
! AGTGTATTGAACAATACTTA+AGG - chr3_4:72707286-72707305 Msa0520230:CDS 25.0%
!! CTCAAAGGTTCTTTTGTTTA+TGG + chr3_4:72705520-72705539 Msa0520220:CDS 30.0%
!! TTATGGAATTTTGAAGGACT+TGG + chr3_4:72705537-72705556 Msa0520220:CDS 30.0%
!! TATGGAATTTTGAAGGACTT+GGG + chr3_4:72705538-72705557 Msa0520220:CDS 30.0%
! ATAAAAGGAAGTGTAAATGG+TGG + chr3_4:72705619-72705638 Msa0520220:intron 30.0%
!! CCAAGAAAGTGCTTAATATA+GGG - chr3_4:72705670-72705689 None:intergenic 30.0%
!! TCCAAGAAAGTGCTTAATAT+AGG - chr3_4:72705671-72705690 None:intergenic 30.0%
TAGTTGTTCAAAGTATGTCA+TGG + chr3_4:72705696-72705715 Msa0520220:CDS 30.0%
! GTTGAACCAAGATTTAAAAC+TGG + chr3_4:72705718-72705737 Msa0520220:CDS 30.0%
! AATTTGTAGGCTTTTCCAAA+AGG + chr3_4:72706095-72706114 Msa0520220:intron 30.0%
TGAAAACAATTGAGAATGCA+TGG + chr3_4:72706177-72706196 Msa0520220:CDS 30.0%
ATTTCCTCAAATAACAGTCT+TGG + chr3_4:72706236-72706255 Msa0520220:CDS 30.0%
AAAGATTACGAGTGCTAATA+GGG - chr3_4:72706306-72706325 None:intergenic 30.0%
! ATTGAAGTACTTGGACTATT+GGG - chr3_4:72706368-72706387 None:intergenic 30.0%
! TATTGAAGTACTTGGACTAT+TGG - chr3_4:72706369-72706388 None:intergenic 30.0%
ATAGTCCAAGTACTTCAATA+TGG + chr3_4:72706369-72706388 Msa0520220:CDS 30.0%
! TTTTAGTCCAAACACAGAAT+TGG + chr3_4:72706589-72706608 Msa0520220:intron 30.0%
TACTTTCACAGTTATTCACA+GGG - chr3_4:72706646-72706665 None:intergenic 30.0%
TTACTTTCACAGTTATTCAC+AGG - chr3_4:72706647-72706666 None:intergenic 30.0%
! AGAATGTTTTGCTAATGGTA+TGG - chr3_4:72707351-72707370 Msa0520230:CDS 30.0%
!! CTCAAAGGTTCTTTTGTTTA+TGG + chr3_4:72705520-72705539 Msa0520220:CDS 30.0%
!! TTATGGAATTTTGAAGGACT+TGG + chr3_4:72705537-72705556 Msa0520220:CDS 30.0%
!! TATGGAATTTTGAAGGACTT+GGG + chr3_4:72705538-72705557 Msa0520220:CDS 30.0%
! ATAAAAGGAAGTGTAAATGG+TGG + chr3_4:72705619-72705638 Msa0520220:intron 30.0%
!! CCAAGAAAGTGCTTAATATA+GGG - chr3_4:72705670-72705689 None:intergenic 30.0%
!! TCCAAGAAAGTGCTTAATAT+AGG - chr3_4:72705671-72705690 None:intergenic 30.0%
TAGTTGTTCAAAGTATGTCA+TGG + chr3_4:72705696-72705715 Msa0520220:CDS 30.0%
! GTTGAACCAAGATTTAAAAC+TGG + chr3_4:72705718-72705737 Msa0520220:CDS 30.0%
! AATTTGTAGGCTTTTCCAAA+AGG + chr3_4:72706095-72706114 Msa0520220:intron 30.0%
TGAAAACAATTGAGAATGCA+TGG + chr3_4:72706177-72706196 Msa0520220:CDS 30.0%
ATTTCCTCAAATAACAGTCT+TGG + chr3_4:72706236-72706255 Msa0520220:CDS 30.0%
AAAGATTACGAGTGCTAATA+GGG - chr3_4:72706306-72706325 None:intergenic 30.0%
! ATTGAAGTACTTGGACTATT+GGG - chr3_4:72706368-72706387 None:intergenic 30.0%
! TATTGAAGTACTTGGACTAT+TGG - chr3_4:72706369-72706388 None:intergenic 30.0%
ATAGTCCAAGTACTTCAATA+TGG + chr3_4:72706369-72706388 Msa0520220:CDS 30.0%
! TTTTAGTCCAAACACAGAAT+TGG + chr3_4:72706589-72706608 Msa0520220:intron 30.0%
TACTTTCACAGTTATTCACA+GGG - chr3_4:72706646-72706665 None:intergenic 30.0%
TTACTTTCACAGTTATTCAC+AGG - chr3_4:72706647-72706666 None:intergenic 30.0%
! AGAATGTTTTGCTAATGGTA+TGG - chr3_4:72707351-72707370 Msa0520230:CDS 30.0%
TCTTGACAGTTGAACAACTA+AGG + chr3_4:72705443-72705462 Msa0520220:five_prime_UTR 35.0%
CCCTATATTAAGCACTTTCT+TGG + chr3_4:72705667-72705686 Msa0520220:CDS 35.0%
! GAACCAAGATTTAAAACTGG+TGG + chr3_4:72705721-72705740 Msa0520220:CDS 35.0%
!!! AAGCCACCAGTTTTAAATCT+TGG - chr3_4:72705727-72705746 None:intergenic 35.0%
! AGATTTAAAACTGGTGGCTT+TGG + chr3_4:72705727-72705746 Msa0520220:CDS 35.0%
CTTGTGTGTGATGAATTTGT+AGG + chr3_4:72706082-72706101 Msa0520220:intron 35.0%
! AAGTCCAAGACTGTTATTTG+AGG - chr3_4:72706243-72706262 None:intergenic 35.0%
! TCTTGGACTTGAAAGCTTTT+GGG + chr3_4:72706253-72706272 Msa0520220:CDS 35.0%
CAAAGATTACGAGTGCTAAT+AGG - chr3_4:72706307-72706326 None:intergenic 35.0%
AGTCCTCATCATGATGATTT+AGG + chr3_4:72706485-72706504 Msa0520220:CDS 35.0%
! TCAGTTTGACTAAATGGACT+AGG - chr3_4:72706545-72706564 None:intergenic 35.0%
TGGACTAAAATCGTCATTCA+AGG - chr3_4:72706579-72706598 None:intergenic 35.0%
ACAACATCCAATTCTGTGTT+TGG - chr3_4:72706599-72706618 None:intergenic 35.0%
ACTTTCACAGTTATTCACAG+GGG - chr3_4:72706645-72706664 None:intergenic 35.0%
! AGATGATATCAAGTTGCTTG+GGG - chr3_4:72706671-72706690 None:intergenic 35.0%
! CAGATGATATCAAGTTGCTT+GGG - chr3_4:72706672-72706691 None:intergenic 35.0%
! GTGTTGTCAATTAGTTTCGT+TGG - chr3_4:72706808-72706827 None:intergenic 35.0%
AGAACTGCATACCAAAATCA+AGG + chr3_4:72707107-72707126 Msa0520220:intron 35.0%
GCATGGTATAGTTATTAGCT+AGG - chr3_4:72707152-72707171 None:intergenic 35.0%
! TTCAATTTTCGTAAACTCGC+AGG + chr3_4:72707308-72707327 Msa0520220:intron 35.0%
! GCTGAAGAATGTTTTGCTAA+TGG - chr3_4:72707356-72707375 Msa0520230:CDS 35.0%
TCTTGACAGTTGAACAACTA+AGG + chr3_4:72705443-72705462 Msa0520220:five_prime_UTR 35.0%
CCCTATATTAAGCACTTTCT+TGG + chr3_4:72705667-72705686 Msa0520220:CDS 35.0%
! GAACCAAGATTTAAAACTGG+TGG + chr3_4:72705721-72705740 Msa0520220:CDS 35.0%
!!! AAGCCACCAGTTTTAAATCT+TGG - chr3_4:72705727-72705746 None:intergenic 35.0%
! AGATTTAAAACTGGTGGCTT+TGG + chr3_4:72705727-72705746 Msa0520220:CDS 35.0%
CTTGTGTGTGATGAATTTGT+AGG + chr3_4:72706082-72706101 Msa0520220:intron 35.0%
! AAGTCCAAGACTGTTATTTG+AGG - chr3_4:72706243-72706262 None:intergenic 35.0%
! TCTTGGACTTGAAAGCTTTT+GGG + chr3_4:72706253-72706272 Msa0520220:CDS 35.0%
CAAAGATTACGAGTGCTAAT+AGG - chr3_4:72706307-72706326 None:intergenic 35.0%
AGTCCTCATCATGATGATTT+AGG + chr3_4:72706485-72706504 Msa0520220:CDS 35.0%
! TCAGTTTGACTAAATGGACT+AGG - chr3_4:72706545-72706564 None:intergenic 35.0%
TGGACTAAAATCGTCATTCA+AGG - chr3_4:72706579-72706598 None:intergenic 35.0%
ACAACATCCAATTCTGTGTT+TGG - chr3_4:72706599-72706618 None:intergenic 35.0%
ACTTTCACAGTTATTCACAG+GGG - chr3_4:72706645-72706664 None:intergenic 35.0%
! AGATGATATCAAGTTGCTTG+GGG - chr3_4:72706671-72706690 None:intergenic 35.0%
! CAGATGATATCAAGTTGCTT+GGG - chr3_4:72706672-72706691 None:intergenic 35.0%
! GTGTTGTCAATTAGTTTCGT+TGG - chr3_4:72706808-72706827 None:intergenic 35.0%
AGAACTGCATACCAAAATCA+AGG + chr3_4:72707107-72707126 Msa0520220:intron 35.0%
GCATGGTATAGTTATTAGCT+AGG - chr3_4:72707152-72707171 None:intergenic 35.0%
! TTCAATTTTCGTAAACTCGC+AGG + chr3_4:72707308-72707327 Msa0520220:intron 35.0%
! GCTGAAGAATGTTTTGCTAA+TGG - chr3_4:72707356-72707375 Msa0520230:CDS 35.0%
! ATGAATGTCGGCTATCTCAA+AGG + chr3_4:72705505-72705524 Msa0520220:CDS 40.0%
CAACCAGTTGAACCAGAAAT+CGG + chr3_4:72705850-72705869 Msa0520220:intron 40.0%
ATTGAAACAACCAGACTGCT+AGG - chr3_4:72705906-72705925 None:intergenic 40.0%
!! CTCTAGGGTTATGGTTCAAT+TGG - chr3_4:72706002-72706021 None:intergenic 40.0%
CAATTGAACCATAACCCTAG+AGG + chr3_4:72706000-72706019 Msa0520220:intron 40.0%
ATTGAACGATGAGACCTCTA+GGG - chr3_4:72706017-72706036 None:intergenic 40.0%
TCTTGTGGCTGACATTTCAA+GGG + chr3_4:72706124-72706143 Msa0520220:intron 40.0%
GCAATCCTAAATGTGACTCA+AGG + chr3_4:72706146-72706165 Msa0520220:CDS 40.0%
TGTCTCCTTGAGTCACATTT+AGG - chr3_4:72706154-72706173 None:intergenic 40.0%
! GTCTTGGACTTGAAAGCTTT+TGG + chr3_4:72706252-72706271 Msa0520220:CDS 40.0%
! CTTGGACTTGAAAGCTTTTG+GGG + chr3_4:72706254-72706273 Msa0520220:CDS 40.0%
! CGTCTCCATATTGAAGTACT+TGG - chr3_4:72706377-72706396 None:intergenic 40.0%
TCTCACACATTCAAGAAGAG+TGG + chr3_4:72706440-72706459 Msa0520220:CDS 40.0%
GCACCTAAATCATCATGATG+AGG - chr3_4:72706491-72706510 None:intergenic 40.0%
TGATGATTTAGGTGCAGTTG+AGG + chr3_4:72706496-72706515 Msa0520220:CDS 40.0%
!! GTTTGACTAAATGGACTAGG+TGG - chr3_4:72706542-72706561 None:intergenic 40.0%
! GATGATATCAAGTTGCTTGG+GGG - chr3_4:72706670-72706689 None:intergenic 40.0%
! GCAGATGATATCAAGTTGCT+TGG - chr3_4:72706673-72706692 None:intergenic 40.0%
ATAGAAATTGGCCCTCTCTT+TGG + chr3_4:72706770-72706789 Msa0520220:intron 40.0%
! ATGCAGACTCCCTTGATTTT+GGG + chr3_4:72707168-72707187 Msa0520220:intron 40.0%
CTAGTGCATCCCAAAATCAA+GGG - chr3_4:72707180-72707199 None:intergenic 40.0%
! ATGAATGTCGGCTATCTCAA+AGG + chr3_4:72705505-72705524 Msa0520220:CDS 40.0%
CAACCAGTTGAACCAGAAAT+CGG + chr3_4:72705850-72705869 Msa0520220:intron 40.0%
ATTGAAACAACCAGACTGCT+AGG - chr3_4:72705906-72705925 None:intergenic 40.0%
!! CTCTAGGGTTATGGTTCAAT+TGG - chr3_4:72706002-72706021 None:intergenic 40.0%
CAATTGAACCATAACCCTAG+AGG + chr3_4:72706000-72706019 Msa0520220:intron 40.0%
ATTGAACGATGAGACCTCTA+GGG - chr3_4:72706017-72706036 None:intergenic 40.0%
TCTTGTGGCTGACATTTCAA+GGG + chr3_4:72706124-72706143 Msa0520220:intron 40.0%
GCAATCCTAAATGTGACTCA+AGG + chr3_4:72706146-72706165 Msa0520220:CDS 40.0%
TGTCTCCTTGAGTCACATTT+AGG - chr3_4:72706154-72706173 None:intergenic 40.0%
! GTCTTGGACTTGAAAGCTTT+TGG + chr3_4:72706252-72706271 Msa0520220:CDS 40.0%
! CTTGGACTTGAAAGCTTTTG+GGG + chr3_4:72706254-72706273 Msa0520220:CDS 40.0%
! CGTCTCCATATTGAAGTACT+TGG - chr3_4:72706377-72706396 None:intergenic 40.0%
TCTCACACATTCAAGAAGAG+TGG + chr3_4:72706440-72706459 Msa0520220:CDS 40.0%
GCACCTAAATCATCATGATG+AGG - chr3_4:72706491-72706510 None:intergenic 40.0%
TGATGATTTAGGTGCAGTTG+AGG + chr3_4:72706496-72706515 Msa0520220:CDS 40.0%
!! GTTTGACTAAATGGACTAGG+TGG - chr3_4:72706542-72706561 None:intergenic 40.0%
! GATGATATCAAGTTGCTTGG+GGG - chr3_4:72706670-72706689 None:intergenic 40.0%
! GCAGATGATATCAAGTTGCT+TGG - chr3_4:72706673-72706692 None:intergenic 40.0%
ATAGAAATTGGCCCTCTCTT+TGG + chr3_4:72706770-72706789 Msa0520220:intron 40.0%
! ATGCAGACTCCCTTGATTTT+GGG + chr3_4:72707168-72707187 Msa0520220:intron 40.0%
CTAGTGCATCCCAAAATCAA+GGG - chr3_4:72707180-72707199 None:intergenic 40.0%
TGGTGTACGTCTGTAATAGC+TGG - chr3_4:72705469-72705488 None:intergenic 45.0%
!! TAGCCGATTTCTGGTTCAAC+TGG - chr3_4:72705856-72705875 None:intergenic 45.0%
! TCGAAGAACTAGCCGATTTC+TGG - chr3_4:72705865-72705884 None:intergenic 45.0%
ATCTCAGTTACCTAGCAGTC+TGG + chr3_4:72705893-72705912 Msa0520220:intron 45.0%
GATTGAACGATGAGACCTCT+AGG - chr3_4:72706018-72706037 None:intergenic 45.0%
CTTGAAATGTCAGCCACAAG+AGG - chr3_4:72706125-72706144 None:intergenic 45.0%
CTCTTGTGGCTGACATTTCA+AGG + chr3_4:72706123-72706142 Msa0520220:intron 45.0%
CAAAATCAAGGGAGTCTGCA+TGG - chr3_4:72707169-72707188 None:intergenic 45.0%
! CATGCAGACTCCCTTGATTT+TGG + chr3_4:72707167-72707186 Msa0520220:intron 45.0%
GCTAGTGCATCCCAAAATCA+AGG - chr3_4:72707181-72707200 None:intergenic 45.0%
!!! ATTTTGGGATGCACTAGCGA+AGG + chr3_4:72707183-72707202 Msa0520220:intron 45.0%
TGGTGTACGTCTGTAATAGC+TGG - chr3_4:72705469-72705488 None:intergenic 45.0%
!! TAGCCGATTTCTGGTTCAAC+TGG - chr3_4:72705856-72705875 None:intergenic 45.0%
! TCGAAGAACTAGCCGATTTC+TGG - chr3_4:72705865-72705884 None:intergenic 45.0%
ATCTCAGTTACCTAGCAGTC+TGG + chr3_4:72705893-72705912 Msa0520220:intron 45.0%
GATTGAACGATGAGACCTCT+AGG - chr3_4:72706018-72706037 None:intergenic 45.0%
CTTGAAATGTCAGCCACAAG+AGG - chr3_4:72706125-72706144 None:intergenic 45.0%
CTCTTGTGGCTGACATTTCA+AGG + chr3_4:72706123-72706142 Msa0520220:intron 45.0%
CAAAATCAAGGGAGTCTGCA+TGG - chr3_4:72707169-72707188 None:intergenic 45.0%
! CATGCAGACTCCCTTGATTT+TGG + chr3_4:72707167-72707186 Msa0520220:intron 45.0%
GCTAGTGCATCCCAAAATCA+AGG - chr3_4:72707181-72707200 None:intergenic 45.0%
!!! ATTTTGGGATGCACTAGCGA+AGG + chr3_4:72707183-72707202 Msa0520220:intron 45.0%
!! CGATGAGACCTCTAGGGTTA+TGG - chr3_4:72706011-72706030 None:intergenic 50.0%
TCCAAAAGGCTCACCTCTTG+TGG + chr3_4:72706109-72706128 Msa0520220:intron 50.0%
! TGGGGTCTGTTTCTCATTGC+AGG + chr3_4:72706272-72706291 Msa0520220:intron 50.0%
! GGGGTCTGTTTCTCATTGCA+GGG + chr3_4:72706273-72706292 Msa0520220:intron 50.0%
ATGGAGACGAATTCGCGTCT+TGG + chr3_4:72706388-72706407 Msa0520220:CDS 50.0%
TGGACAATGTGTACCTGGAG+AGG - chr3_4:72706522-72706541 None:intergenic 50.0%
CTAGGTGGACAATGTGTACC+TGG - chr3_4:72706527-72706546 None:intergenic 50.0%
!! CGATGAGACCTCTAGGGTTA+TGG - chr3_4:72706011-72706030 None:intergenic 50.0%
TCCAAAAGGCTCACCTCTTG+TGG + chr3_4:72706109-72706128 Msa0520220:intron 50.0%
! TGGGGTCTGTTTCTCATTGC+AGG + chr3_4:72706272-72706291 Msa0520220:intron 50.0%
! GGGGTCTGTTTCTCATTGCA+GGG + chr3_4:72706273-72706292 Msa0520220:intron 50.0%
ATGGAGACGAATTCGCGTCT+TGG + chr3_4:72706388-72706407 Msa0520220:CDS 50.0%
TGGACAATGTGTACCTGGAG+AGG - chr3_4:72706522-72706541 None:intergenic 50.0%
CTAGGTGGACAATGTGTACC+TGG - chr3_4:72706527-72706546 None:intergenic 50.0%
! GCCACAAGAGGTGAGCCTTT+TGG - chr3_4:72706113-72706132 None:intergenic 55.0%
! GCCACAAGAGGTGAGCCTTT+TGG - chr3_4:72706113-72706132 None:intergenic 55.0%
GGTGCAGTTGAGGCCTCTCC+AGG + chr3_4:72706506-72706525 Msa0520220:CDS 65.0%
GGTGCAGTTGAGGCCTCTCC+AGG + chr3_4:72706506-72706525 Msa0520220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72705420 72707454 72705420 ID=Msa0520220;Name=Msa0520220
chr3_4 mRNA 72705420 72707454 72705420 ID=Msa0520220-mRNA-1;Parent=Msa0520220;Name=Msa0520220-mRNA-1;_AED=0.15;_eAED=0.22;_QI=85|0.25|0.2|1|0|0|5|30|224
chr3_4 exon 72705420 72705630 72705420 ID=Msa0520220-mRNA-1:exon:20152;Parent=Msa0520220-mRNA-1
chr3_4 exon 72705665 72705753 72705665 ID=Msa0520220-mRNA-1:exon:20153;Parent=Msa0520220-mRNA-1
chr3_4 exon 72706145 72706275 72706145 ID=Msa0520220-mRNA-1:exon:20154;Parent=Msa0520220-mRNA-1
chr3_4 exon 72706294 72706527 72706294 ID=Msa0520220-mRNA-1:exon:20155;Parent=Msa0520220-mRNA-1
chr3_4 exon 72707330 72707454 72707330 ID=Msa0520220-mRNA-1:exon:20156;Parent=Msa0520220-mRNA-1
chr3_4 five_prime_UTR 72705420 72705504 72705420 ID=Msa0520220-mRNA-1:five_prime_utr;Parent=Msa0520220-mRNA-1
chr3_4 CDS 72705505 72705630 72705505 ID=Msa0520220-mRNA-1:cds;Parent=Msa0520220-mRNA-1
chr3_4 CDS 72705665 72705753 72705665 ID=Msa0520220-mRNA-1:cds;Parent=Msa0520220-mRNA-1
chr3_4 CDS 72706145 72706275 72706145 ID=Msa0520220-mRNA-1:cds;Parent=Msa0520220-mRNA-1
chr3_4 CDS 72706294 72706527 72706294 ID=Msa0520220-mRNA-1:cds;Parent=Msa0520220-mRNA-1
chr3_4 CDS 72707330 72707424 72707330 ID=Msa0520220-mRNA-1:cds;Parent=Msa0520220-mRNA-1
chr3_4 three_prime_UTR 72707425 72707454 72707425 ID=Msa0520220-mRNA-1:three_prime_utr;Parent=Msa0520220-mRNA-1
Gene Sequence

>Msa0520220

ATGAATGTCGGCTATCTCAAAGGTTCTTTTGTTTATGGAATTTTGAAGGACTTGGGTTTCGAAGATTCTCATCTCATTACTTATCAATCTGCTGAAGAATGTAATGAGCTTTTTATAAAAGGAAGTTTCCCTATATTAAGCACTTTCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGTGGCTTTGGCTATGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAATGCATGGTTAAAGAAAACTAGTTGTCTAGATTCTAACACAGAAATTTCCTCAAATAACAGTCTTGGACTTGAAAGCTTTTGGGGGATTGCTTCCCTATTAGCACTCGTAATCTTTGTTATCACATTCCTATATCAACACAAACACATTTGGTTACCCAATAGTCCAAGTACTTCAATATGGAGACGAATTCGCGTCTTGGTAATGATATTTGATCAAAGAGACTTAAACTCTCACACATTCAAGAAGAGTGGAAATAAAAATGAAAGCAGTAAAAGTCCTCATCATGATGATTTAGGTGCAGTTGAGGCCTCTCCAGGTTTTGACACAAATGAGTCCATACCATTAGCAAAACATTCTTCAGCACTCTCTGACAAAGCATTTGCTGTCATCTGCATTCATACAAAGCAATGA

Protein sequence

>Msa0520220

MNVGYLKGSFVYGILKDLGFEDSHLITYQSAEECNELFIKGSFPILSTFLELIVVQSMSWLNQDLKLVALAMAILNVTQGDKMKTIENAWLKKTSCLDSNTEISSNNSLGLESFWGIASLLALVIFVITFLYQHKHIWLPNSPSTSIWRRIRVLVMIFDQRDLNSHTFKKSGNKNESSKSPHHDDLGAVEASPGFDTNESIPLAKHSSALSDKAFAVICIHTKQ*