AlfalfaGEDB | Msa0863770

M. sativa cultivar zhongmu-4 / Msa0863770

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0863770	XP_003617710.2	95.825	503	8	3	1	490	1	503	0.0	964

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0863770	sp\|Q9FM80\|MTEF9_ARATH	61.753	502	164	6	6	489	4	495	0.0	577

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0863770	G7K4F3	95.825	503	8	3	1	490	1	503	0.0	964

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TFs/TRs:

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Gene ID	Type	Classification
Msa0863770	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0863770	-0.833599	4.862330e-56	-8.615850e-47
Msa0000780	Msa0863770	0.820932	5.281634e-53	-8.615850e-47
Msa0001950	Msa0863770	0.801846	7.424859e-49	-8.615850e-47
Msa0006700	Msa0863770	0.843740	1.163576e-58	-8.615850e-47
Msa0008850	Msa0863770	0.846414	2.204711e-59	-8.615850e-47
Msa0013050	Msa0863770	-0.812271	4.610632e-51	-8.615850e-47
Msa0014410	Msa0863770	0.800706	1.270783e-48	-8.615850e-47
Msa0017120	Msa0863770	0.804109	2.528772e-49	-8.615850e-47
Msa0020630	Msa0863770	0.882095	1.387798e-70	-8.615850e-47
Msa0024680	Msa0863770	0.834895	2.299953e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0863770	MtrunA17_Chr5g0445491	95.825	503	8	3	1	490	1	503	0.0	964
Msa0863770	MtrunA17_Chr2g0294671	32.456	228	139	7	217	438	215	433	2.72e-26	111
Msa0863770	MtrunA17_Chr2g0294671	30.256	195	125	5	246	436	208	395	2.21e-17	84.7
Msa0863770	MtrunA17_Chr2g0294671	27.556	225	134	6	172	390	277	478	2.60e-17	84.3
Msa0863770	MtrunA17_Chr5g0428941	24.924	329	202	7	178	468	171	492	1.32e-25	110
Msa0863770	MtrunA17_Chr5g0428941	25.263	190	136	3	208	397	134	317	2.32e-11	65.9
Msa0863770	MtrunA17_Chr2g0311181	26.639	244	161	6	214	456	70	296	2.17e-25	106
Msa0863770	MtrunA17_Chr4g0043941	28.571	266	176	6	175	435	42	298	2.38e-24	103
Msa0863770	MtrunA17_Chr4g0043941	27.948	229	161	2	213	438	41	268	2.74e-19	89.0
Msa0863770	MtrunA17_Chr5g0417641	29.319	191	132	1	248	438	88	275	2.83e-21	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0863770	AT5G55580.1	61.753	502	164	6	6	489	4	495	0.0	577
Msa0863770	AT5G55580.2	73.950	357	89	1	133	489	37	389	0.0	554
Msa0863770	AT5G55580.3	57.357	401	143	6	6	388	4	394	1.96e-140	409
Msa0863770	AT2G21710.1	26.148	283	199	5	182	461	320	595	1.82e-26	113
Msa0863770	AT2G21710.1	23.256	387	271	11	93	468	127	498	1.98e-13	73.2
Msa0863770	AT4G02990.2	24.242	330	203	6	178	468	179	500	3.13e-24	106
Msa0863770	AT4G02990.1	24.242	330	203	6	178	468	179	500	3.13e-24	106
Msa0863770	AT4G38160.4	27.068	266	180	6	176	435	43	300	3.37e-23	100
Msa0863770	AT4G38160.4	29.741	232	155	6	213	438	41	270	4.54e-21	94.7
Msa0863770	AT4G38160.1	27.068	266	180	6	176	435	43	300	3.37e-23	100

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Find 98 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAAGCTAAGGTACAT+CGG	0.593674	5_4:-63782975	None:intergenic
AAAGCCGAAGTATTTGTACT+TGG	0.508230	5_4:+63782911	Msa0863770:CDS
AAATATTGTGCATATAGAGT+AGG	0.577021	5_4:-63783316	None:intergenic
AAATGAGAGAATCCATAAGT+TGG	0.528482	5_4:-63783551	None:intergenic
AACAGTAAGATATTTAATTG+AGG	0.516231	5_4:+63782423	Msa0863770:CDS
AAGACAAGCTAAGGTACATC+GGG	0.535136	5_4:-63782974	None:intergenic
AATAAATGTATGTTCTGCAC+AGG	0.526298	5_4:+63782183	Msa0863770:CDS
AATTCATCCAAATTTATGAG+AGG	0.636805	5_4:+63782143	Msa0863770:CDS
AATTGAGGAAGTTGGCATCA+AGG	0.486070	5_4:+63782438	Msa0863770:CDS
AATTGTCCATGTATCATGTA+TGG	0.474000	5_4:-63783699	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGTTGAAAGGATTGTAA+GGG	-	chr5_4:63780618-63780637	None:intergenic	30.0%
AGAATGTTGAAAGGATTGTA+AGG	-	chr5_4:63780619-63780638	None:intergenic	30.0%
TTGTGAAGTTGTGTTTGAAT+TGG	+	chr5_4:63781100-63781119	Msa0863770:intron	30.0%
ATTGAACTTGTGTTGTATCT+AGG	+	chr5_4:63781195-63781214	Msa0863770:intron	30.0%
GCATAGACACTTTATATTGT+AGG	+	chr5_4:63781347-63781366	Msa0863770:intron	30.0%
TACAGATAGACAACAAGAAA+AGG	+	chr5_4:63781548-63781567	Msa0863770:intron	30.0%
TAGACAACAAGAAAAGGAAA+AGG	+	chr5_4:63781554-63781573	Msa0863770:CDS	30.0%
AGACAACAAGAAAAGGAAAA+GGG	+	chr5_4:63781555-63781574	Msa0863770:CDS	30.0%
ACAAGAAAATAACAGTGCAA+AGG	+	chr5_4:63781641-63781660	Msa0863770:CDS	30.0%
ACTAATAAGAGGTCTAACAA+TGG	-	chr5_4:63781717-63781736	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	63780538	63783778	63780538	ID=Msa0863770;Name=Msa0863770
chr5_4	mRNA	63780538	63783778	63780538	ID=Msa0863770-mRNA-1;Parent=Msa0863770;Name=Msa0863770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51\|1\|1\|1\|0.8\|0.66\|6\|508\|490
chr5_4	exon	63780538	63780876	63780538	ID=Msa0863770-mRNA-1:exon:20023;Parent=Msa0863770-mRNA-1
chr5_4	exon	63781217	63781283	63781217	ID=Msa0863770-mRNA-1:exon:20024;Parent=Msa0863770-mRNA-1
chr5_4	exon	63781553	63781662	63781553	ID=Msa0863770-mRNA-1:exon:20025;Parent=Msa0863770-mRNA-1
chr5_4	exon	63782028	63782717	63782028	ID=Msa0863770-mRNA-1:exon:20026;Parent=Msa0863770-mRNA-1
chr5_4	exon	63782882	63783430	63782882	ID=Msa0863770-mRNA-1:exon:20027;Parent=Msa0863770-mRNA-1
chr5_4	exon	63783502	63783778	63783502	ID=Msa0863770-mRNA-1:exon:20028;Parent=Msa0863770-mRNA-1
chr5_4	five_prime_UTR	63780538	63780588	63780538	ID=Msa0863770-mRNA-1:five_prime_utr;Parent=Msa0863770-mRNA-1
chr5_4	CDS	63780589	63780876	63780589	ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4	CDS	63781217	63781283	63781217	ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4	CDS	63781553	63781662	63781553	ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4	CDS	63782028	63782717	63782028	ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4	CDS	63782882	63783199	63782882	ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4	three_prime_UTR	63783200	63783430	63783200	ID=Msa0863770-mRNA-1:three_prime_utr;Parent=Msa0863770-mRNA-1
chr5_4	three_prime_UTR	63783502	63783778	63783502	ID=Msa0863770-mRNA-1:three_prime_utr;Parent=Msa0863770-mRNA-1

Gene Sequence

>Msa0863770

ATGGCTACTACATTTTTATCACTTTACCCTTACAATCCTTTCAACATTCTTCCAATTCCTTCCTCTAATCATGCTTCTGCTTCTTCTTCTTCTTCTTCATTTCTCAAACGAAGAAAATTCACTGTTCTTTCTGCTCATTCCAATCCCAAAATTCTCAAAACCAATCGAAAATCACCCTATGGAAAATTCCTCTCTCCGTATGACTCTGATGATGAAGATGAAGAAATGGACTTTGAAGACGATGAAGATGAAGATGAAGATGAAGATGATGAAGATGATGATGATGATGACGGATTTGCTGAGCCTACTGATCTTAATGCCAAAGACAAGAGATTGAAGTCAAAGACAGTTGCAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTTTTAACAATGGACAGAGCAAAAGATTGCCCAAAAGTCAGAGAATAGCATCCTTACAAGAAAATAACAGTGCAAAGTTTCGTAGAAATTCGATGGAGAAAAGATATCCGGAGTTGTCTGAAGAGATTCTTTTGGATGAGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTCATCCAAATTTATGAGAGGCACATGTCGTCATTTCAAATAAATGTATGTTCTGCACAGGAAAGGATAGATTACTTGATGAGTCTTGGGGTTAAACATAAAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTAGAATACACGGTGGAGAACAATTTGAAGACTCACGTTGCTTTCTTAATGGGCTTGGGCGTACCTAGTACCAAAATAGGGCAAATTATTGCTTCTACTCCGTCCCTTTTTTCTTACAGTGTTGAGAAATCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTGATGTTTCTTAACAAAGAGTTGGATGCACCCAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTGCATTACAGTATTGATGATGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCGGACATCTTGAAAATTTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAAGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAGCTTCACAATGAGGTGCAAACCTTGACCAAATACCCGATGTACCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCATAAGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAACGATGGGCTGGAACTACTCTTGATGAATATGCTGCATTTCGACAGAGATTATTGCTCAAAAAACTTGCTGAGAAATATGACAGAAAAATGTGA

Protein sequence

>Msa0863770

MATTFLSLYPYNPFNILPIPSSNHASASSSSSSFLKRRKFTVLSAHSNPKILKTNRKSPYGKFLSPYDSDDEDEEMDFEDDEDEDEDEDDEDDDDDDGFAEPTDLNAKDKRLKSKTVADRQQEKEKGVRSFNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKRYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAFRQRLLLKKLAEKYDRKM*