AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0863770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863770 MtrunA17_Chr5g0445491 95.825 503 8 3 1 490 1 503 0.0 964
Msa0863770 MtrunA17_Chr2g0294671 32.456 228 139 7 217 438 215 433 2.72e-26 111
Msa0863770 MtrunA17_Chr2g0294671 30.256 195 125 5 246 436 208 395 2.21e-17 84.7
Msa0863770 MtrunA17_Chr2g0294671 27.556 225 134 6 172 390 277 478 2.60e-17 84.3
Msa0863770 MtrunA17_Chr5g0428941 24.924 329 202 7 178 468 171 492 1.32e-25 110
Msa0863770 MtrunA17_Chr5g0428941 25.263 190 136 3 208 397 134 317 2.32e-11 65.9
Msa0863770 MtrunA17_Chr2g0311181 26.639 244 161 6 214 456 70 296 2.17e-25 106
Msa0863770 MtrunA17_Chr4g0043941 28.571 266 176 6 175 435 42 298 2.38e-24 103
Msa0863770 MtrunA17_Chr4g0043941 27.948 229 161 2 213 438 41 268 2.74e-19 89.0
Msa0863770 MtrunA17_Chr5g0417641 29.319 191 132 1 248 438 88 275 2.83e-21 94.4
Msa0863770 MtrunA17_Chr6g0448821 26.804 291 175 4 180 435 49 336 7.22e-21 94.4
Msa0863770 MtrunA17_Chr4g0034981 23.630 292 185 5 181 436 277 566 1.24e-19 92.0
Msa0863770 MtrunA17_Chr4g0034981 24.476 286 198 7 163 437 184 462 8.12e-13 70.9
Msa0863770 MtrunA17_Chr1g0212691 22.526 293 216 7 145 433 143 428 8.17e-18 86.3
Msa0863770 MtrunA17_Chr1g0212691 24.681 235 167 6 214 444 108 336 3.12e-15 78.2
Msa0863770 MtrunA17_Chr8g0391881 27.064 218 152 4 217 432 162 374 2.96e-17 83.6
Msa0863770 MtrunA17_Chr8g0391881 25.683 183 133 3 214 395 86 266 1.32e-13 72.4
Msa0863770 MtrunA17_Chr7g0250261 25.984 254 173 7 212 462 42 283 2.59e-16 79.3
Msa0863770 MtrunA17_Chr0c29g0494001 25.984 254 173 7 212 462 42 283 2.59e-16 79.3
Msa0863770 MtrunA17_Chr2g0304101 23.767 223 155 4 214 432 70 281 3.31e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863770 AT5G55580.1 61.753 502 164 6 6 489 4 495 0.0 577
Msa0863770 AT5G55580.2 73.950 357 89 1 133 489 37 389 0.0 554
Msa0863770 AT5G55580.3 57.357 401 143 6 6 388 4 394 1.96e-140 409
Msa0863770 AT2G21710.1 26.148 283 199 5 182 461 320 595 1.82e-26 113
Msa0863770 AT2G21710.1 23.256 387 271 11 93 468 127 498 1.98e-13 73.2
Msa0863770 AT4G02990.2 24.242 330 203 6 178 468 179 500 3.13e-24 106
Msa0863770 AT4G02990.1 24.242 330 203 6 178 468 179 500 3.13e-24 106
Msa0863770 AT4G38160.4 27.068 266 180 6 176 435 43 300 3.37e-23 100
Msa0863770 AT4G38160.4 29.741 232 155 6 213 438 41 270 4.54e-21 94.7
Msa0863770 AT4G38160.1 27.068 266 180 6 176 435 43 300 3.37e-23 100
Msa0863770 AT4G38160.1 29.741 232 155 6 213 438 41 270 4.54e-21 94.7
Msa0863770 AT4G38160.2 27.068 266 180 6 176 435 43 300 4.20e-23 100
Msa0863770 AT4G38160.2 29.741 232 155 6 213 438 41 270 5.59e-21 94.7
Msa0863770 AT4G38160.3 27.068 266 180 6 176 435 43 300 1.17e-22 100
Msa0863770 AT4G38160.3 29.741 232 155 6 213 438 41 270 1.18e-20 94.0
Msa0863770 AT1G78930.1 27.650 217 153 3 219 435 342 554 1.39e-22 101
Msa0863770 AT1G78930.1 28.485 165 110 3 207 368 397 556 2.26e-14 76.3
Msa0863770 AT2G03050.2 26.339 224 155 5 214 435 34 249 1.07e-20 92.4
Msa0863770 AT2G03050.1 26.339 224 155 5 214 435 33 248 1.09e-20 92.4
Msa0863770 AT2G44020.1 25.424 295 182 5 179 437 145 437 3.96e-20 93.6
Msa0863770 AT2G44020.1 25.957 235 152 8 207 438 83 298 8.88e-12 67.8
Msa0863770 AT2G21710.2 24.481 241 175 4 182 419 320 556 4.19e-20 94.0
Msa0863770 AT2G21710.2 23.256 387 271 11 93 468 127 498 3.86e-13 72.0
Msa0863770 AT4G14605.2 26.484 219 154 5 217 435 236 447 4.94e-20 93.2
Msa0863770 AT4G14605.2 26.222 225 137 6 172 390 262 463 4.47e-14 74.7
Msa0863770 AT4G14605.1 26.484 219 154 5 217 435 236 447 4.94e-20 93.2
Msa0863770 AT4G14605.1 26.222 225 137 6 172 390 262 463 4.47e-14 74.7
Msa0863770 AT2G34620.1 26.389 216 145 4 247 458 85 290 9.21e-20 90.1
Msa0863770 AT2G21710.3 24.268 239 174 4 182 417 320 554 1.45e-19 92.0
Msa0863770 AT2G21710.3 23.256 387 271 11 93 468 127 498 2.58e-13 72.8
Msa0863770 AT2G36000.2 27.200 250 158 8 214 457 74 305 6.04e-19 88.2
Msa0863770 AT2G36000.1 27.200 250 158 8 214 457 74 305 7.11e-19 88.2
Msa0863770 AT3G18870.1 25.591 254 131 8 217 462 69 272 1.46e-16 80.5

Find 98 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGCACCTTTGGAATTA+AGG 0.140140 5_4:+63782114 Msa0863770:CDS
AGCAATAATTTGCCCTATTT+TGG 0.169836 5_4:-63782353 None:intergenic
GACTCACGTTGCTTTCTTAA+TGG 0.188627 5_4:+63782312 Msa0863770:CDS
CATGTGGTACAAATTGTTTC+AGG 0.204396 5_4:-63783731 None:intergenic
CATCTTCACAATGCTCTCTT+TGG 0.219102 5_4:-63782569 None:intergenic
TGACTTCAATCTCTTGTCTT+TGG 0.225373 5_4:-63781248 None:intergenic
CGTTGCTTTCTTAATGGGCT+TGG 0.237557 5_4:+63782318 Msa0863770:CDS
GGATGCTATTCTCTGACTTT+TGG 0.242258 5_4:-63781616 None:intergenic
ACATGTGCCTCTCATAAATT+TGG 0.244120 5_4:-63782150 None:intergenic
TAAACTTAAGAGCCAACTTA+TGG 0.283678 5_4:+63783539 Msa0863770:three_prime_UTR
CTCCTTAGGAAATTTATTCT+TGG 0.307382 5_4:-63782643 None:intergenic
TCCAACGTATTGACATTTCA+TGG 0.312784 5_4:+63782506 Msa0863770:CDS
ATCTTCACAATGCTCTCTTT+GGG 0.327138 5_4:-63782568 None:intergenic
AGAATATTCATATTCATTCA+TGG 0.328307 5_4:+63780570 Msa0863770:exon
ACTAAACAAGCTCACCTTTC+AGG 0.329385 5_4:-63783423 None:intergenic
GCTAAGGTACATCGGGTATT+TGG 0.329609 5_4:-63782967 None:intergenic
CCAAGAGGAAATGGTCCTTT+TGG 0.331786 5_4:-63783050 None:intergenic
CTTGATTACTTAAGCACCTT+TGG 0.335021 5_4:+63782106 Msa0863770:CDS
TCGTCCTCGTCATAAGTTCT+TGG 0.344950 5_4:+63783010 Msa0863770:CDS
ACTCACGTTGCTTTCTTAAT+GGG 0.345489 5_4:+63782313 Msa0863770:CDS
GATGTACCTTAGCTTGTCTT+TGG 0.348758 5_4:+63782977 Msa0863770:CDS
GGCGTACCTAGTACCAAAAT+AGG 0.359195 5_4:+63782340 Msa0863770:CDS
TAGATTACTTGATGAGTCTT+GGG 0.360371 5_4:+63782212 Msa0863770:CDS
GTTGCTTTCTTAATGGGCTT+GGG 0.365837 5_4:+63782319 Msa0863770:CDS
GTTGTCTGAAGAGATTCTTT+TGG 0.368169 5_4:+63782063 Msa0863770:CDS
GCATGATTAGAGGAAGGAAT+TGG 0.374741 5_4:-63780640 None:intergenic
TTGAAGTCAAAGACAGTTGC+AGG 0.386479 5_4:+63781262 Msa0863770:CDS
CAATCAACTTGCACGAGTAC+TGG 0.402183 5_4:+63783223 Msa0863770:three_prime_UTR
AGAAGCAGAAGCATGATTAG+AGG 0.407915 5_4:-63780650 None:intergenic
TGATGATGAAGATGAAGAAA+TGG 0.419929 5_4:+63780795 Msa0863770:CDS
GAATTTGTGGTTGCCTCAAA+AGG 0.421558 5_4:-63782261 None:intergenic
ATAGATTACTTGATGAGTCT+TGG 0.425881 5_4:+63782211 Msa0863770:CDS
CTGCATTACAGTATTGATGA+TGG 0.426933 5_4:+63782613 Msa0863770:CDS
ACCGTGTATTCTAGAATTTG+TGG 0.436537 5_4:-63782274 None:intergenic
AGATATTTAATTGAGGAAGT+TGG 0.438021 5_4:+63782430 Msa0863770:CDS
AGAATGTTGAAAGGATTGTA+AGG 0.447642 5_4:-63780616 None:intergenic
GCAGGTGCTATCTCTGTCCT+TGG 0.454121 5_4:+63782878 Msa0863770:intron
CAAAGAGAGCATTGTGAAGA+TGG 0.456446 5_4:+63782570 Msa0863770:CDS
ACTAGAGATCCAAGAGGAAA+TGG 0.462060 5_4:-63783059 None:intergenic
TTTATCATTGCTGTTTCAGT+TGG 0.462519 5_4:+63783400 Msa0863770:three_prime_UTR
TAGACAACAAGAAAAGGAAA+AGG 0.464265 5_4:+63781554 Msa0863770:CDS
CCAAAAGGACCATTTCCTCT+TGG 0.467379 5_4:+63783050 Msa0863770:CDS
TGACAAAAGGATTCATCAGT+TGG 0.470816 5_4:-63783083 None:intergenic
TTCGATGGAGAAAAGATATC+CGG 0.473213 5_4:+63782039 Msa0863770:CDS
AATTGTCCATGTATCATGTA+TGG 0.474000 5_4:-63783699 None:intergenic
TATGACGAGGACGAATTCTC+TGG 0.474277 5_4:-63783001 None:intergenic
TCCAGCCCATCGTTGACAAA+AGG 0.483266 5_4:-63783096 None:intergenic
AATTGAGGAAGTTGGCATCA+AGG 0.486070 5_4:+63782438 Msa0863770:CDS
TCAATTAAATATCTTACTGT+TGG 0.487640 5_4:-63782421 None:intergenic
GATGTTTCTTAACAAAGAGT+TGG 0.488384 5_4:+63782540 Msa0863770:CDS
TACAGATAGACAACAAGAAA+AGG 0.490910 5_4:+63781548 Msa0863770:intron
TTCCAAGAATAAATTTCCTA+AGG 0.495242 5_4:+63782641 Msa0863770:CDS
ATTATACAGTTCATCAATGA+AGG 0.506760 5_4:-63783581 None:intergenic
AAAGCCGAAGTATTTGTACT+TGG 0.508230 5_4:+63782911 Msa0863770:CDS
GCGTACCTAGTACCAAAATA+GGG 0.510052 5_4:+63782341 Msa0863770:CDS
AACAGTAAGATATTTAATTG+AGG 0.516231 5_4:+63782423 Msa0863770:CDS
TTGTGATTCCTTAATTCCAA+AGG 0.518718 5_4:-63782122 None:intergenic
ACCAATCGAAAATCACCCTA+TGG 0.522397 5_4:+63780748 Msa0863770:CDS
TCTTTGGCATTAAGATCAGT+AGG 0.525087 5_4:-63781232 None:intergenic
ATGTGGTACAAATTGTTTCA+GGG 0.525874 5_4:-63783730 None:intergenic
AATAAATGTATGTTCTGCAC+AGG 0.526298 5_4:+63782183 Msa0863770:CDS
CGGCTTTAGATTAGCTTCCA+AGG 0.526666 5_4:-63782895 None:intergenic
ATAAATTTCCTAAGGAGCAT+AGG 0.526985 5_4:+63782649 Msa0863770:CDS
AAATGAGAGAATCCATAAGT+TGG 0.528482 5_4:-63783551 None:intergenic
TTTACCAAGTACAAATACTT+CGG 0.532246 5_4:-63782915 None:intergenic
AAGACAAGCTAAGGTACATC+GGG 0.535136 5_4:-63782974 None:intergenic
GCTGTTTCAGTTGGCCTGAA+AGG 0.536391 5_4:+63783409 Msa0863770:three_prime_UTR
GTAGTTTCGTAGAAATTCGA+TGG 0.537172 5_4:+63782024 Msa0863770:intron
GTACATCGGGTATTTGGTCA+AGG 0.541793 5_4:-63782961 None:intergenic
GGAATTGGAAGAATGTTGAA+AGG 0.542797 5_4:-63780625 None:intergenic
TCCCTAAAGAAAGCTCCAAA+AGG 0.551170 5_4:+63783035 Msa0863770:CDS
TCTGGTCCAAAGACAAGCTA+AGG 0.551617 5_4:-63782983 None:intergenic
AGACAACAAGAAAAGGAAAA+GGG 0.551962 5_4:+63781555 Msa0863770:CDS
TTGTGACCATACATGATACA+TGG 0.557384 5_4:+63783693 Msa0863770:three_prime_UTR
ATACGTTGGACAAGAATTTG+AGG 0.570242 5_4:-63782493 None:intergenic
CACGAGTACTGGAAAATGAT+CGG 0.571795 5_4:+63783234 Msa0863770:three_prime_UTR
AAATATTGTGCATATAGAGT+AGG 0.577021 5_4:-63783316 None:intergenic
ATGTATGTTCTGCACAGGAA+AGG 0.582720 5_4:+63782188 Msa0863770:CDS
AGATTACTTGATGAGTCTTG+GGG 0.589186 5_4:+63782213 Msa0863770:CDS
AAAGACAAGCTAAGGTACAT+CGG 0.593674 5_4:-63782975 None:intergenic
TTTATTTCAACTCGTACATG+TGG 0.598013 5_4:-63783747 None:intergenic
AGAATCTCTTCAGACAACTC+CGG 0.598051 5_4:-63782058 None:intergenic
GTGCTTAAGTAATCAAGAAG+TGG 0.598694 5_4:-63782100 None:intergenic
GCAGAAGCATGATTAGAGGA+AGG 0.598929 5_4:-63780646 None:intergenic
TCTTCATCATCAGAGTCATA+CGG 0.598960 5_4:-63780784 None:intergenic
CATCAGAGTCATACGGAGAG+AGG 0.602302 5_4:-63780777 None:intergenic
ATACTGTAATGCAGAAGCTG+AGG 0.609678 5_4:-63782604 None:intergenic
ACAAGAAAATAACAGTGCAA+AGG 0.615006 5_4:+63781641 Msa0863770:CDS
TACTGTAATGCAGAAGCTGA+GGG 0.620289 5_4:-63782603 None:intergenic
TCCATGAAATGTCAATACGT+TGG 0.626915 5_4:-63782507 None:intergenic
GGTAAATGAGCTTCACAATG+AGG 0.633064 5_4:+63782932 Msa0863770:CDS
AATTCATCCAAATTTATGAG+AGG 0.636805 5_4:+63782143 Msa0863770:CDS
GAATGTTGAAAGGATTGTAA+GGG 0.639767 5_4:-63780615 None:intergenic
ACCACAAATTCTAGAATACA+CGG 0.657650 5_4:+63782273 Msa0863770:CDS
TATAGAGTAGGCACATCACA+TGG 0.663477 5_4:-63783304 None:intergenic
GTTGGAACTAGAGATCCAAG+AGG 0.745944 5_4:-63783065 None:intergenic
GAAACCAAGAACTTATGACG+AGG 0.752928 5_4:-63783014 None:intergenic
ACAAATTCTAGAATACACGG+TGG 0.791192 5_4:+63782276 Msa0863770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTACTAAAATTAAAAAT+TGG - chr5_4:63780950-63780969 None:intergenic 10.0%
!! AAAATACTAAAATTTCATCA+TGG - chr5_4:63780902-63780921 None:intergenic 15.0%
!! ATATATTTGAATTGAAGTAA+TGG + chr5_4:63781030-63781049 Msa0863770:intron 15.0%
!! TATATTTGAATTGAAGTAAT+GGG + chr5_4:63781031-63781050 Msa0863770:intron 15.0%
!! TAGTAGTATATTATGTTATT+AGG + chr5_4:63781733-63781752 Msa0863770:intron 15.0%
!! CATTGTAATTATATGTATTT+AGG + chr5_4:63781917-63781936 Msa0863770:intron 15.0%
!!! ATGGATTAAGATAATTTTCA+GGG + chr5_4:63780541-63780560 Msa0863770:five_prime_UTR 20.0%
!! AGAATATTCATATTCATTCA+TGG + chr5_4:63780570-63780589 Msa0863770:exon 20.0%
!!! TTTTAGTAGAAAATTTGAAG+TGG + chr5_4:63780958-63780977 Msa0863770:intron 20.0%
!!! TTTAGTAGAAAATTTGAAGT+GGG + chr5_4:63780959-63780978 Msa0863770:intron 20.0%
!!! CTTGGTAGTTTTAATTTTAA+GGG + chr5_4:63781306-63781325 Msa0863770:intron 20.0%
!!! TTGGTAGTTTTAATTTTAAG+GGG + chr5_4:63781307-63781326 Msa0863770:intron 20.0%
!! CATAATATACTACTAATAAG+AGG - chr5_4:63781728-63781747 None:intergenic 20.0%
!! TCAATTAAATATCTTACTGT+TGG - chr5_4:63782424-63782443 None:intergenic 20.0%
!! AACAGTAAGATATTTAATTG+AGG + chr5_4:63782423-63782442 Msa0863770:CDS 20.0%
!!! GAATATACAACTTTTAATGA+AGG - chr5_4:63783628-63783647 None:intergenic 20.0%
!!! CATGGATTAAGATAATTTTC+AGG + chr5_4:63780540-63780559 Msa0863770:five_prime_UTR 25.0%
! GTTTGAATTGGAGAAATAAA+TGG + chr5_4:63781112-63781131 Msa0863770:intron 25.0%
!! ATGTTTGAAAAAGTTTTGCT+TGG + chr5_4:63781288-63781307 Msa0863770:intron 25.0%
!!! GCTTGGTAGTTTTAATTTTA+AGG + chr5_4:63781305-63781324 Msa0863770:intron 25.0%
!! ATAAAGTGTCTATGCTATAT+AGG - chr5_4:63781342-63781361 None:intergenic 25.0%
! CTTTATATTGTAGGTGTATT+TGG + chr5_4:63781356-63781375 Msa0863770:intron 25.0%
! AAAGCAATTATAAGATTCCA+TGG - chr5_4:63781990-63782009 None:intergenic 25.0%
! AATTCATCCAAATTTATGAG+AGG + chr5_4:63782143-63782162 Msa0863770:CDS 25.0%
!! ATATAAGAAGAATCCTTTTG+AGG + chr5_4:63782248-63782267 Msa0863770:CDS 25.0%
! AGATATTTAATTGAGGAAGT+TGG + chr5_4:63782430-63782449 Msa0863770:CDS 25.0%
! TTCCAAGAATAAATTTCCTA+AGG + chr5_4:63782641-63782660 Msa0863770:CDS 25.0%
! TTTACCAAGTACAAATACTT+CGG - chr5_4:63782918-63782937 None:intergenic 25.0%
! AAATATTGTGCATATAGAGT+AGG - chr5_4:63783319-63783338 None:intergenic 25.0%
! ATTATACAGTTCATCAATGA+AGG - chr5_4:63783584-63783603 None:intergenic 25.0%
GAATGTTGAAAGGATTGTAA+GGG - chr5_4:63780618-63780637 None:intergenic 30.0%
AGAATGTTGAAAGGATTGTA+AGG - chr5_4:63780619-63780638 None:intergenic 30.0%
!!! CGATTGGTTTTGAGAATTTT+GGG - chr5_4:63780736-63780755 None:intergenic 30.0%
!!! TCGATTGGTTTTGAGAATTT+TGG - chr5_4:63780737-63780756 None:intergenic 30.0%
! TGATGATGAAGATGAAGAAA+TGG + chr5_4:63780795-63780814 Msa0863770:CDS 30.0%
TTGTGAAGTTGTGTTTGAAT+TGG + chr5_4:63781100-63781119 Msa0863770:intron 30.0%
ATTGAACTTGTGTTGTATCT+AGG + chr5_4:63781195-63781214 Msa0863770:intron 30.0%
GCATAGACACTTTATATTGT+AGG + chr5_4:63781347-63781366 Msa0863770:intron 30.0%
TACAGATAGACAACAAGAAA+AGG + chr5_4:63781548-63781567 Msa0863770:intron 30.0%
TAGACAACAAGAAAAGGAAA+AGG + chr5_4:63781554-63781573 Msa0863770:CDS 30.0%
AGACAACAAGAAAAGGAAAA+GGG + chr5_4:63781555-63781574 Msa0863770:CDS 30.0%
!!! TGCACTGTTATTTTCTTGTA+AGG - chr5_4:63781640-63781659 None:intergenic 30.0%
ACAAGAAAATAACAGTGCAA+AGG + chr5_4:63781641-63781660 Msa0863770:CDS 30.0%
!! AACAGTGCAAAGGTATTAAA+TGG + chr5_4:63781651-63781670 Msa0863770:intron 30.0%
ACTAATAAGAGGTCTAACAA+TGG - chr5_4:63781717-63781736 None:intergenic 30.0%
!!! TTTTGGGACTGAATATTGAT+TGG + chr5_4:63781831-63781850 Msa0863770:intron 30.0%
! TTTGGGACTGAATATTGATT+GGG + chr5_4:63781832-63781851 Msa0863770:intron 30.0%
TTTCAAGAATTTCGAGAGTT+TGG - chr5_4:63781863-63781882 None:intergenic 30.0%
AAACTCTCGAAATTCTTGAA+AGG + chr5_4:63781862-63781881 Msa0863770:intron 30.0%
AACTCTCGAAATTCTTGAAA+GGG + chr5_4:63781863-63781882 Msa0863770:intron 30.0%
! AGATTCTTTTGGATGAGAAA+TGG + chr5_4:63782074-63782093 Msa0863770:CDS 30.0%
TTGTGATTCCTTAATTCCAA+AGG - chr5_4:63782125-63782144 None:intergenic 30.0%
AATAAATGTATGTTCTGCAC+AGG + chr5_4:63782183-63782202 Msa0863770:CDS 30.0%
ATAGATTACTTGATGAGTCT+TGG + chr5_4:63782211-63782230 Msa0863770:CDS 30.0%
TAGATTACTTGATGAGTCTT+GGG + chr5_4:63782212-63782231 Msa0863770:CDS 30.0%
!! ACCACAAATTCTAGAATACA+CGG + chr5_4:63782273-63782292 Msa0863770:CDS 30.0%
!! AGCAATAATTTGCCCTATTT+TGG - chr5_4:63782356-63782375 None:intergenic 30.0%
CTCAACACTGTAAGAAAAAA+GGG - chr5_4:63782389-63782408 None:intergenic 30.0%
TCTCAACACTGTAAGAAAAA+AGG - chr5_4:63782390-63782409 None:intergenic 30.0%
GATGTTTCTTAACAAAGAGT+TGG + chr5_4:63782540-63782559 Msa0863770:CDS 30.0%
CTCCTTAGGAAATTTATTCT+TGG - chr5_4:63782646-63782665 None:intergenic 30.0%
! ATAAATTTCCTAAGGAGCAT+AGG + chr5_4:63782649-63782668 Msa0863770:CDS 30.0%
ATGCAAAAATAACCTGTGTA+AGG - chr5_4:63782711-63782730 None:intergenic 30.0%
AAGGAAACGATGTTATGTAA+TGG + chr5_4:63782777-63782796 Msa0863770:intron 30.0%
CGTTATAAGGATCAAACAAA+AGG - chr5_4:63782820-63782839 None:intergenic 30.0%
!! TTTATCATTGCTGTTTCAGT+TGG + chr5_4:63783400-63783419 Msa0863770:three_prime_UTR 30.0%
TAAACTTAAGAGCCAACTTA+TGG + chr5_4:63783539-63783558 Msa0863770:three_prime_UTR 30.0%
AAATGAGAGAATCCATAAGT+TGG - chr5_4:63783554-63783573 None:intergenic 30.0%
AATTGTCCATGTATCATGTA+TGG - chr5_4:63783702-63783721 None:intergenic 30.0%
ATGTGGTACAAATTGTTTCA+GGG - chr5_4:63783733-63783752 None:intergenic 30.0%
TTTATTTCAACTCGTACATG+TGG - chr5_4:63783750-63783769 None:intergenic 30.0%
GGAATTGGAAGAATGTTGAA+AGG - chr5_4:63780628-63780647 None:intergenic 35.0%
!!! GGTTTTGAGAATTTTGGGAT+TGG - chr5_4:63780731-63780750 None:intergenic 35.0%
TCTTCATCATCAGAGTCATA+CGG - chr5_4:63780787-63780806 None:intergenic 35.0%
AACTTGTGTTGTATCTAGGA+CGG + chr5_4:63781199-63781218 Msa0863770:intron 35.0%
TCTTTGGCATTAAGATCAGT+AGG - chr5_4:63781235-63781254 None:intergenic 35.0%
TGACTTCAATCTCTTGTCTT+TGG - chr5_4:63781251-63781270 None:intergenic 35.0%
ACTAATTCACACACTGACAA+TGG - chr5_4:63781486-63781505 None:intergenic 35.0%
! GGTGTGAGATCTTTTAACAA+TGG + chr5_4:63781576-63781595 Msa0863770:CDS 35.0%
! GATGCTATTCTCTGACTTTT+GGG - chr5_4:63781618-63781637 None:intergenic 35.0%
TTATTGAATGCCCAAAAGTC+AGG + chr5_4:63781799-63781818 Msa0863770:intron 35.0%
TATTGAATGCCCAAAAGTCA+GGG + chr5_4:63781800-63781819 Msa0863770:intron 35.0%
! ATAAAATGCCCCTGACTTTT+GGG - chr5_4:63781812-63781831 None:intergenic 35.0%
! AATAAAATGCCCCTGACTTT+TGG - chr5_4:63781813-63781832 None:intergenic 35.0%
!!! AAGTCAGGGGCATTTTATTT+TGG + chr5_4:63781814-63781833 Msa0863770:intron 35.0%
!!! AGTCAGGGGCATTTTATTTT+GGG + chr5_4:63781815-63781834 Msa0863770:intron 35.0%
GTAGTTTCGTAGAAATTCGA+TGG + chr5_4:63782024-63782043 Msa0863770:intron 35.0%
TTCGATGGAGAAAAGATATC+CGG + chr5_4:63782039-63782058 Msa0863770:CDS 35.0%
! GTTGTCTGAAGAGATTCTTT+TGG + chr5_4:63782063-63782082 Msa0863770:CDS 35.0%
GTGCTTAAGTAATCAAGAAG+TGG - chr5_4:63782103-63782122 None:intergenic 35.0%
CTTGATTACTTAAGCACCTT+TGG + chr5_4:63782106-63782125 Msa0863770:CDS 35.0%
!! CTTAAGCACCTTTGGAATTA+AGG + chr5_4:63782114-63782133 Msa0863770:CDS 35.0%
ACATGTGCCTCTCATAAATT+TGG - chr5_4:63782153-63782172 None:intergenic 35.0%
AGATTACTTGATGAGTCTTG+GGG + chr5_4:63782213-63782232 Msa0863770:CDS 35.0%
!! ACCGTGTATTCTAGAATTTG+TGG - chr5_4:63782277-63782296 None:intergenic 35.0%
!! ACAAATTCTAGAATACACGG+TGG + chr5_4:63782276-63782295 Msa0863770:CDS 35.0%
! ACTCACGTTGCTTTCTTAAT+GGG + chr5_4:63782313-63782332 Msa0863770:CDS 35.0%
!!! ATTTGCCCTATTTTGGTACT+AGG - chr5_4:63782349-63782368 None:intergenic 35.0%
ACACTGTAAGAAAAAAGGGA+CGG - chr5_4:63782385-63782404 None:intergenic 35.0%
TGGCATCAAGGAAAAAGATT+TGG + chr5_4:63782450-63782469 Msa0863770:CDS 35.0%
GGCATCAAGGAAAAAGATTT+GGG + chr5_4:63782451-63782470 Msa0863770:CDS 35.0%
ATACGTTGGACAAGAATTTG+AGG - chr5_4:63782496-63782515 None:intergenic 35.0%
! TCCAACGTATTGACATTTCA+TGG + chr5_4:63782506-63782525 Msa0863770:CDS 35.0%
TCCATGAAATGTCAATACGT+TGG - chr5_4:63782510-63782529 None:intergenic 35.0%
ATCTTCACAATGCTCTCTTT+GGG - chr5_4:63782571-63782590 None:intergenic 35.0%
!! CTGCATTACAGTATTGATGA+TGG + chr5_4:63782613-63782632 Msa0863770:CDS 35.0%
! TTTTCATTCCTATGCTCCTT+AGG - chr5_4:63782660-63782679 None:intergenic 35.0%
GAGCATAGGAATGAAAAATG+CGG + chr5_4:63782663-63782682 Msa0863770:CDS 35.0%
!!! AATTTTGACTAGCCTTACAC+AGG + chr5_4:63782696-63782715 Msa0863770:CDS 35.0%
TTATTCTCCCTTTGCACAAA+AGG + chr5_4:63782745-63782764 Msa0863770:intron 35.0%
TAACTGAGTGTCACGTTATA+AGG - chr5_4:63782833-63782852 None:intergenic 35.0%
! AAAGCCGAAGTATTTGTACT+TGG + chr5_4:63782911-63782930 Msa0863770:CDS 35.0%
AAAGACAAGCTAAGGTACAT+CGG - chr5_4:63782978-63782997 None:intergenic 35.0%
!!! TCCTTTTGGAGCTTTCTTTA+GGG - chr5_4:63783039-63783058 None:intergenic 35.0%
TGACAAAAGGATTCATCAGT+TGG - chr5_4:63783086-63783105 None:intergenic 35.0%
! ATGAATCCTTTTGTCAACGA+TGG + chr5_4:63783090-63783109 Msa0863770:CDS 35.0%
! TGAATCCTTTTGTCAACGAT+GGG + chr5_4:63783091-63783110 Msa0863770:CDS 35.0%
! ATTAATCCCTGTCTTATTGC+AGG + chr5_4:63783480-63783499 Msa0863770:intron 35.0%
GTCACAAGTGTAACAAAAAG+TGG - chr5_4:63783680-63783699 None:intergenic 35.0%
TTGTGACCATACATGATACA+TGG + chr5_4:63783693-63783712 Msa0863770:three_prime_UTR 35.0%
CATGTGGTACAAATTGTTTC+AGG - chr5_4:63783734-63783753 None:intergenic 35.0%
GCATGATTAGAGGAAGGAAT+TGG - chr5_4:63780643-63780662 None:intergenic 40.0%
! AGAAGCAGAAGCATGATTAG+AGG - chr5_4:63780653-63780672 None:intergenic 40.0%
ACCAATCGAAAATCACCCTA+TGG + chr5_4:63780748-63780767 Msa0863770:CDS 40.0%
! TCCATAGGGTGATTTTCGAT+TGG - chr5_4:63780752-63780771 None:intergenic 40.0%
! GGAGAGAGGAATTTTCCATA+GGG - chr5_4:63780766-63780785 None:intergenic 40.0%
TTGAAGTCAAAGACAGTTGC+AGG + chr5_4:63781262-63781281 Msa0863770:CDS 40.0%
TGTCAGACACTAACACGTTA+TGG - chr5_4:63781385-63781404 None:intergenic 40.0%
TTGAATGTAACCACACGAGT+CGG - chr5_4:63781413-63781432 None:intergenic 40.0%
! GGATGCTATTCTCTGACTTT+TGG - chr5_4:63781619-63781638 None:intergenic 40.0%
GCTGCAGTTATTGTGTGATT+AGG + chr5_4:63781755-63781774 Msa0863770:intron 40.0%
TTATTGTGTGATTAGGCAGC+AGG + chr5_4:63781762-63781781 Msa0863770:intron 40.0%
ATTGAATGCCCAAAAGTCAG+GGG + chr5_4:63781801-63781820 Msa0863770:intron 40.0%
!!! ACCCACAACTCGAGTTTTTT+GGG + chr5_4:63781890-63781909 Msa0863770:intron 40.0%
AGAATCTCTTCAGACAACTC+CGG - chr5_4:63782061-63782080 None:intergenic 40.0%
ATGTATGTTCTGCACAGGAA+AGG + chr5_4:63782188-63782207 Msa0863770:CDS 40.0%
GAATTTGTGGTTGCCTCAAA+AGG - chr5_4:63782264-63782283 None:intergenic 40.0%
! GACTCACGTTGCTTTCTTAA+TGG + chr5_4:63782312-63782331 Msa0863770:CDS 40.0%
!! GTTGCTTTCTTAATGGGCTT+GGG + chr5_4:63782319-63782338 Msa0863770:CDS 40.0%
GCGTACCTAGTACCAAAATA+GGG + chr5_4:63782341-63782360 Msa0863770:CDS 40.0%
AATTGAGGAAGTTGGCATCA+AGG + chr5_4:63782438-63782457 Msa0863770:CDS 40.0%
CATCTTCACAATGCTCTCTT+TGG - chr5_4:63782572-63782591 None:intergenic 40.0%
!! CAAAGAGAGCATTGTGAAGA+TGG + chr5_4:63782570-63782589 Msa0863770:CDS 40.0%
TACTGTAATGCAGAAGCTGA+GGG - chr5_4:63782606-63782625 None:intergenic 40.0%
ATACTGTAATGCAGAAGCTG+AGG - chr5_4:63782607-63782626 None:intergenic 40.0%
! CCTTGTTCCTTTTGTGCAAA+GGG - chr5_4:63782755-63782774 None:intergenic 40.0%
! TCCTTGTTCCTTTTGTGCAA+AGG - chr5_4:63782756-63782775 None:intergenic 40.0%
GCACAAAAGGAACAAGGAAA+AGG + chr5_4:63782758-63782777 Msa0863770:intron 40.0%
GGTAAATGAGCTTCACAATG+AGG + chr5_4:63782932-63782951 Msa0863770:CDS 40.0%
AAGACAAGCTAAGGTACATC+GGG - chr5_4:63782977-63782996 None:intergenic 40.0%
!! GATGTACCTTAGCTTGTCTT+TGG + chr5_4:63782977-63782996 Msa0863770:CDS 40.0%
GAAACCAAGAACTTATGACG+AGG - chr5_4:63783017-63783036 None:intergenic 40.0%
TCCCTAAAGAAAGCTCCAAA+AGG + chr5_4:63783035-63783054 Msa0863770:CDS 40.0%
!!! GTCCTTTTGGAGCTTTCTTT+AGG - chr5_4:63783040-63783059 None:intergenic 40.0%
ACTAGAGATCCAAGAGGAAA+TGG - chr5_4:63783062-63783081 None:intergenic 40.0%
!! CACGAGTACTGGAAAATGAT+CGG + chr5_4:63783234-63783253 Msa0863770:three_prime_UTR 40.0%
TATAGAGTAGGCACATCACA+TGG - chr5_4:63783307-63783326 None:intergenic 40.0%
ACTAAACAAGCTCACCTTTC+AGG - chr5_4:63783426-63783445 None:intergenic 40.0%
! GCAGAAGCATGATTAGAGGA+AGG - chr5_4:63780649-63780668 None:intergenic 45.0%
! CGGAGAGAGGAATTTTCCAT+AGG - chr5_4:63780767-63780786 None:intergenic 45.0%
!!! GACCCACAACTCGAGTTTTT+TGG + chr5_4:63781889-63781908 Msa0863770:intron 45.0%
! CCCCAAAAAACTCGAGTTGT+GGG - chr5_4:63781894-63781913 None:intergenic 45.0%
!!! CCCACAACTCGAGTTTTTTG+GGG + chr5_4:63781891-63781910 Msa0863770:intron 45.0%
! TCCCCAAAAAACTCGAGTTG+TGG - chr5_4:63781895-63781914 None:intergenic 45.0%
GCAGCCAATTAATGTACCTG+TGG + chr5_4:63781962-63781981 Msa0863770:intron 45.0%
GGCACCACAGGTACATTAAT+TGG - chr5_4:63781969-63781988 None:intergenic 45.0%
! TTAATGTACCTGTGGTGCCA+TGG + chr5_4:63781970-63781989 Msa0863770:intron 45.0%
ATAAGATTCCATGGCACCAC+AGG - chr5_4:63781981-63782000 None:intergenic 45.0%
!! CGTTGCTTTCTTAATGGGCT+TGG + chr5_4:63782318-63782337 Msa0863770:CDS 45.0%
GGCGTACCTAGTACCAAAAT+AGG + chr5_4:63782340-63782359 Msa0863770:CDS 45.0%
CCCTTTGCACAAAAGGAACA+AGG + chr5_4:63782752-63782771 Msa0863770:intron 45.0%
!! CGGCTTTAGATTAGCTTCCA+AGG - chr5_4:63782898-63782917 None:intergenic 45.0%
GTACATCGGGTATTTGGTCA+AGG - chr5_4:63782964-63782983 None:intergenic 45.0%
GCTAAGGTACATCGGGTATT+TGG - chr5_4:63782970-63782989 None:intergenic 45.0%
TCTGGTCCAAAGACAAGCTA+AGG - chr5_4:63782986-63783005 None:intergenic 45.0%
TATGACGAGGACGAATTCTC+TGG - chr5_4:63783004-63783023 None:intergenic 45.0%
TCGTCCTCGTCATAAGTTCT+TGG + chr5_4:63783010-63783029 Msa0863770:CDS 45.0%
! CCAAGAGGAAATGGTCCTTT+TGG - chr5_4:63783053-63783072 None:intergenic 45.0%
CCAAAAGGACCATTTCCTCT+TGG + chr5_4:63783050-63783069 Msa0863770:CDS 45.0%
GTTGGAACTAGAGATCCAAG+AGG - chr5_4:63783068-63783087 None:intergenic 45.0%
CAATCAACTTGCACGAGTAC+TGG + chr5_4:63783223-63783242 Msa0863770:three_prime_UTR 45.0%
CCACAACCTGCAATAAGACA+GGG - chr5_4:63783489-63783508 None:intergenic 45.0%
ACCACAACCTGCAATAAGAC+AGG - chr5_4:63783490-63783509 None:intergenic 45.0%
CATCAGAGTCATACGGAGAG+AGG - chr5_4:63780780-63780799 None:intergenic 50.0%
CTGCAGGCACAGTAGTCAAT+AGG - chr5_4:63782862-63782881 None:intergenic 50.0%
! CTATTGACTACTGTGCCTGC+AGG + chr5_4:63782860-63782879 Msa0863770:intron 50.0%
! TCCTTTTGTCAACGATGGGC+TGG + chr5_4:63783095-63783114 Msa0863770:CDS 50.0%
TCCAGCCCATCGTTGACAAA+AGG - chr5_4:63783099-63783118 None:intergenic 50.0%
! GCTGTTTCAGTTGGCCTGAA+AGG + chr5_4:63783409-63783428 Msa0863770:three_prime_UTR 50.0%
! CCCTGTCTTATTGCAGGTTG+TGG + chr5_4:63783486-63783505 Msa0863770:intron 50.0%
!! TGACACAACACCGACTCGTG+TGG + chr5_4:63781400-63781419 Msa0863770:intron 55.0%
AGGACAGAGATAGCACCTGC+AGG - chr5_4:63782878-63782897 None:intergenic 55.0%
! GCAGGTGCTATCTCTGTCCT+TGG + chr5_4:63782878-63782897 Msa0863770:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 63780538 63783778 63780538 ID=Msa0863770;Name=Msa0863770
chr5_4 mRNA 63780538 63783778 63780538 ID=Msa0863770-mRNA-1;Parent=Msa0863770;Name=Msa0863770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|0.8|0.66|6|508|490
chr5_4 exon 63780538 63780876 63780538 ID=Msa0863770-mRNA-1:exon:20023;Parent=Msa0863770-mRNA-1
chr5_4 exon 63781217 63781283 63781217 ID=Msa0863770-mRNA-1:exon:20024;Parent=Msa0863770-mRNA-1
chr5_4 exon 63781553 63781662 63781553 ID=Msa0863770-mRNA-1:exon:20025;Parent=Msa0863770-mRNA-1
chr5_4 exon 63782028 63782717 63782028 ID=Msa0863770-mRNA-1:exon:20026;Parent=Msa0863770-mRNA-1
chr5_4 exon 63782882 63783430 63782882 ID=Msa0863770-mRNA-1:exon:20027;Parent=Msa0863770-mRNA-1
chr5_4 exon 63783502 63783778 63783502 ID=Msa0863770-mRNA-1:exon:20028;Parent=Msa0863770-mRNA-1
chr5_4 five_prime_UTR 63780538 63780588 63780538 ID=Msa0863770-mRNA-1:five_prime_utr;Parent=Msa0863770-mRNA-1
chr5_4 CDS 63780589 63780876 63780589 ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4 CDS 63781217 63781283 63781217 ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4 CDS 63781553 63781662 63781553 ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4 CDS 63782028 63782717 63782028 ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4 CDS 63782882 63783199 63782882 ID=Msa0863770-mRNA-1:cds;Parent=Msa0863770-mRNA-1
chr5_4 three_prime_UTR 63783200 63783430 63783200 ID=Msa0863770-mRNA-1:three_prime_utr;Parent=Msa0863770-mRNA-1
chr5_4 three_prime_UTR 63783502 63783778 63783502 ID=Msa0863770-mRNA-1:three_prime_utr;Parent=Msa0863770-mRNA-1
Gene Sequence

>Msa0863770

ATGGCTACTACATTTTTATCACTTTACCCTTACAATCCTTTCAACATTCTTCCAATTCCTTCCTCTAATCATGCTTCTGCTTCTTCTTCTTCTTCTTCATTTCTCAAACGAAGAAAATTCACTGTTCTTTCTGCTCATTCCAATCCCAAAATTCTCAAAACCAATCGAAAATCACCCTATGGAAAATTCCTCTCTCCGTATGACTCTGATGATGAAGATGAAGAAATGGACTTTGAAGACGATGAAGATGAAGATGAAGATGAAGATGATGAAGATGATGATGATGATGACGGATTTGCTGAGCCTACTGATCTTAATGCCAAAGACAAGAGATTGAAGTCAAAGACAGTTGCAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTTTTAACAATGGACAGAGCAAAAGATTGCCCAAAAGTCAGAGAATAGCATCCTTACAAGAAAATAACAGTGCAAAGTTTCGTAGAAATTCGATGGAGAAAAGATATCCGGAGTTGTCTGAAGAGATTCTTTTGGATGAGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTCATCCAAATTTATGAGAGGCACATGTCGTCATTTCAAATAAATGTATGTTCTGCACAGGAAAGGATAGATTACTTGATGAGTCTTGGGGTTAAACATAAAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTAGAATACACGGTGGAGAACAATTTGAAGACTCACGTTGCTTTCTTAATGGGCTTGGGCGTACCTAGTACCAAAATAGGGCAAATTATTGCTTCTACTCCGTCCCTTTTTTCTTACAGTGTTGAGAAATCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTGATGTTTCTTAACAAAGAGTTGGATGCACCCAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTGCATTACAGTATTGATGATGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCGGACATCTTGAAAATTTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAAGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAGCTTCACAATGAGGTGCAAACCTTGACCAAATACCCGATGTACCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCATAAGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAACGATGGGCTGGAACTACTCTTGATGAATATGCTGCATTTCGACAGAGATTATTGCTCAAAAAACTTGCTGAGAAATATGACAGAAAAATGTGA

Protein sequence

>Msa0863770

MATTFLSLYPYNPFNILPIPSSNHASASSSSSSFLKRRKFTVLSAHSNPKILKTNRKSPYGKFLSPYDSDDEDEEMDFEDDEDEDEDEDDEDDDDDDGFAEPTDLNAKDKRLKSKTVADRQQEKEKGVRSFNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKRYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAFRQRLLLKKLAEKYDRKM*