AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287310 MtrunA17_Chr2g0304261 96.694 726 23 1 1 726 1 725 0.0 1443
Msa0287310 MtrunA17_Chr1g0149561 50.746 737 319 13 1 724 1 706 0.0 704
Msa0287310 MtrunA17_Chr4g0075481 38.174 723 351 11 32 672 31 739 1.03e-145 444
Msa0287310 MtrunA17_Chr2g0289351 41.163 447 222 7 239 677 29 442 1.31e-101 320
Msa0287310 MtrunA17_Chr7g0237741 36.752 117 69 2 37 150 92 206 3.38e-15 76.6
Msa0287310 MtrunA17_Chr2g0323971 34.188 117 72 2 37 150 95 209 6.10e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287310 AT2G25290.2 52.710 738 311 12 10 726 20 740 0.0 731
Msa0287310 AT2G25290.3 52.710 738 311 12 10 726 20 740 0.0 731
Msa0287310 AT2G25290.4 52.710 738 311 12 10 726 20 740 0.0 731
Msa0287310 AT2G25290.1 52.710 738 311 12 10 726 20 740 0.0 731
Msa0287310 AT4G32070.2 50.734 749 309 13 28 726 39 777 0.0 709
Msa0287310 AT4G32070.1 50.734 749 309 13 28 726 39 777 0.0 709
Msa0287310 AT5G20360.1 47.489 697 337 11 37 722 123 801 0.0 600
Msa0287310 AT5G20360.2 47.489 697 337 11 37 722 123 801 0.0 600
Msa0287310 AT5G20360.3 47.489 697 337 11 37 722 113 791 0.0 599
Msa0287310 AT5G20360.7 47.489 697 337 11 37 722 63 741 0.0 599
Msa0287310 AT5G20360.4 47.489 697 337 11 37 722 63 741 0.0 599
Msa0287310 AT5G20360.5 47.489 697 337 11 37 722 33 711 0.0 597
Msa0287310 AT5G20360.6 47.489 697 337 11 37 722 33 711 0.0 597
Msa0287310 AT1G62390.1 37.921 712 367 11 28 675 39 739 3.90e-144 440
Msa0287310 AT4G30480.2 35.897 117 70 2 37 150 102 216 2.79e-12 68.6

Find 203 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATATTGCCTTCCCTTTA+TGG 0.058863 2_3:-29655208 Msa0287310:three_prime_UTR
TCACTTGTGGAATTCAAATT+AGG 0.110801 2_3:-29658833 Msa0287310:CDS
AACAAAGCTTTACCATATTT+TGG 0.130985 2_3:+29660390 None:intergenic
GCTACTGTTCTATATCATTT+TGG 0.186245 2_3:-29661005 Msa0287310:five_prime_UTR
TTCACCACACAACCGTTCTT+AGG 0.215577 2_3:+29659574 None:intergenic
TTTGATTGGTGGGTTGAAAA+TGG 0.232105 2_3:-29660739 Msa0287310:exon
TTCTTGTCTCCTCTCTGAAT+TGG 0.239341 2_3:-29661112 Msa0287310:five_prime_UTR
TAGGAGGGTTTGTAATATAT+TGG 0.239424 2_3:-29660788 Msa0287310:five_prime_UTR
TAATTTCTCTTAGTTGAAAA+AGG 0.249599 2_3:+29659815 None:intergenic
TCGAACAAGCGAAACTTTCT+TGG 0.255608 2_3:-29659114 Msa0287310:CDS
CAACAATGCTGAGGAGAATA+TGG 0.273348 2_3:-29659026 Msa0287310:CDS
TTCCCTTTATGGTTAGGTTT+AGG 0.280429 2_3:-29655197 Msa0287310:three_prime_UTR
GGCGATTAATGAATGCAATT+TGG 0.285660 2_3:-29660427 Msa0287310:CDS
GGAGAAACAAGTGAGGAAAA+TGG 0.297609 2_3:-29660696 Msa0287310:CDS
TGATCGTCCTCAGCCTTATT+TGG 0.310717 2_3:+29660027 None:intergenic
AACTGTGAGTGTTGTGAATT+AGG 0.312403 2_3:-29660807 Msa0287310:five_prime_UTR
TGCGATTGCTTAGGTGTTCC+AGG 0.312676 2_3:-29655311 Msa0287310:three_prime_UTR
CAGCTCTAGCATTGTTCAAT+TGG 0.314408 2_3:-29659339 Msa0287310:CDS
TTCTTGAAAACCTTTGTGTT+TGG 0.315697 2_3:-29660920 Msa0287310:five_prime_UTR
CACTTGTGGAATTCAAATTA+GGG 0.324137 2_3:-29658832 Msa0287310:CDS
CTTGAAGTTACTCCAAAATA+TGG 0.326606 2_3:-29660402 Msa0287310:CDS
GCTGAGGAGAATATGGAAAA+AGG 0.329603 2_3:-29659019 Msa0287310:CDS
AATCCTAAACCTAACCATAA+AGG 0.332901 2_3:+29655194 None:intergenic
TCATAGAATGGATCGTGATT+AGG 0.339265 2_3:+29659643 None:intergenic
AGAAGAAACAAATCCTGATT+TGG 0.339778 2_3:-29661079 Msa0287310:five_prime_UTR
ATTGCCTTCCCTTTATGGTT+AGG 0.341348 2_3:-29655203 Msa0287310:three_prime_UTR
TCTTGTCTCCTCTCTGAATT+GGG 0.342104 2_3:-29661111 Msa0287310:five_prime_UTR
GGACAACATTGCACCAAATA+AGG 0.342512 2_3:-29660040 Msa0287310:CDS
GAGTTTGCGAGTTCCTTTAC+AGG 0.346302 2_3:-29655281 Msa0287310:three_prime_UTR
TATGATGACAATAGCAATTC+AGG 0.360186 2_3:+29658396 None:intergenic
TTATGAGGCTTTGAATAGAT+TGG 0.361909 2_3:-29660352 Msa0287310:CDS
AGGAGTTTCATCCTTTCGTT+TGG 0.362101 2_3:-29658541 Msa0287310:CDS
TTGATTGGTGGGTTGAAAAT+GGG 0.363196 2_3:-29660738 Msa0287310:exon
TACGAAGGCTTTCTTGCTCT+TGG 0.363383 2_3:-29659148 Msa0287310:CDS
TACTTAGACTTTCATGAACT+TGG 0.364355 2_3:-29659457 Msa0287310:CDS
TTTCATTCATTTCAAATTCT+GGG 0.369069 2_3:-29661189 Msa0287310:five_prime_UTR
CTCGCAAACTCCTACATTCC+TGG 0.371435 2_3:+29655293 None:intergenic
TACCTCCTGCCATGTCAAAT+AGG 0.379171 2_3:+29659377 None:intergenic
AGCTCTAGCATTGTTCAATT+GGG 0.381899 2_3:-29659338 Msa0287310:CDS
TGAGAGAAAGGTTCAAACTT+TGG 0.382368 2_3:+29661234 None:intergenic
TAACATGTCTTGTTCTTGTT+GGG 0.393983 2_3:-29661284 Msa0287310:five_prime_UTR
AAATTAAAAGTTCGTATGAA+TGG 0.399777 2_3:-29659237 Msa0287310:CDS
CATACCCATCTCTCCAAATC+AGG 0.403940 2_3:+29661066 None:intergenic
ACAAGAACTGCTCCAAGGCT+TGG 0.406799 2_3:+29659778 None:intergenic
ATGGGTATGTTTCTGTTCAA+TGG 0.407131 2_3:-29661052 Msa0287310:five_prime_UTR
TAAGCAGAAAGAGGATGTTA+AGG 0.407983 2_3:-29659947 Msa0287310:CDS
CTCAGTGAAGCCTCCACTAC+CGG 0.408622 2_3:-29658962 Msa0287310:CDS
TCTTTAAATTAAAATTAGAT+TGG 0.411652 2_3:+29655030 None:intergenic
GAATTGAAGTGGGCTGAAAC+AGG 0.411735 2_3:-29659706 Msa0287310:CDS
ATAACATGTCTTGTTCTTGT+TGG 0.412806 2_3:-29661285 Msa0287310:five_prime_UTR
TGCGAGTTCCTTTACAGGTT+GGG 0.413560 2_3:-29655276 Msa0287310:three_prime_UTR
TCCAACGCCATGATATTATT+CGG 0.416082 2_3:+29660288 None:intergenic
TCAAATAACACTGCTGTAGA+TGG 0.416089 2_3:-29658710 Msa0287310:intron
TGATGTGGAAAAGGTTGAAA+TGG 0.417154 2_3:-29659605 Msa0287310:CDS
ATCCTAAACCTAACCATAAA+GGG 0.418696 2_3:+29655195 None:intergenic
TATAAGATGGGCTCAATTGC+CGG 0.418935 2_3:-29659848 Msa0287310:CDS
GAAAGCGCTCAAATTGCTTC+CGG 0.424125 2_3:-29660529 Msa0287310:CDS
GAGAAACAAGTGAGGAAAAT+GGG 0.424347 2_3:-29660695 Msa0287310:CDS
TCACCACACAACCGTTCTTA+GGG 0.427681 2_3:+29659575 None:intergenic
ACCCGTATGGCATGAATCAT+TGG 0.428713 2_3:-29658807 Msa0287310:CDS
TAGTGTGTTTACTATTTGAT+TGG 0.436721 2_3:-29660753 Msa0287310:five_prime_UTR
TTCAACATTCAAATCTGAGT+TGG 0.438805 2_3:-29661139 Msa0287310:five_prime_UTR
AACATTACAGCTACATCTGT+TGG 0.438941 2_3:+29658746 None:intergenic
TCTTCAACAACTTGAAGAAA+AGG 0.439480 2_3:+29658455 None:intergenic
GACACATCTATATGATTTCC+CGG 0.441015 2_3:+29660510 None:intergenic
AAAGCGCTCAAATTGCTTCC+GGG 0.441561 2_3:-29660528 Msa0287310:CDS
TCAACATTCAAATCTGAGTT+GGG 0.441633 2_3:-29661138 Msa0287310:five_prime_UTR
TGTGACAGGTTCCCAAGCCT+TGG 0.443112 2_3:-29659790 Msa0287310:CDS
GCTCATCTTGTGTTGAGGAT+TGG 0.446370 2_3:-29659534 Msa0287310:CDS
TGTAATATATTGGATTGGAT+TGG 0.449113 2_3:-29660778 Msa0287310:five_prime_UTR
TAAGAGAAATTATTTGTGAC+AGG 0.451847 2_3:-29659804 Msa0287310:CDS
ATGCTAGAGCTGTCATCTCT+TGG 0.452894 2_3:+29659350 None:intergenic
AATTAAAAGTTCGTATGAAT+GGG 0.453467 2_3:-29659236 Msa0287310:CDS
AGACGAAGTTTCTCATAGAA+TGG 0.453833 2_3:+29659631 None:intergenic
GTGTTTACTATTTGATTGGT+GGG 0.454079 2_3:-29660749 Msa0287310:five_prime_UTR
CAAGAACTGCTCCAAGGCTT+GGG 0.454815 2_3:+29659779 None:intergenic
AAAGATGGTTCAACATAATC+CGG 0.460718 2_3:+29660192 None:intergenic
GAGTTTATACAGAAAACATT+GGG 0.465864 2_3:-29655166 Msa0287310:three_prime_UTR
CGATACTCTTCTTCTGAACA+AGG 0.468671 2_3:+29658515 None:intergenic
CTTCTCTTCTAGTTTCTCCT+CGG 0.470200 2_3:+29660071 None:intergenic
CTTAGGTGTTCCAGGAATGT+AGG 0.471872 2_3:-29655303 Msa0287310:three_prime_UTR
TGCTATATGCAGATGGGACT+TGG 0.472267 2_3:-29660462 Msa0287310:CDS
ATCAGATGAAACTGCAGCGC+TGG 0.475338 2_3:-29658912 Msa0287310:CDS
GTCGTATGTGCGGAGTAATA+TGG 0.475460 2_3:-29660490 Msa0287310:CDS
TCTATCTTCCCAACCTGTAA+AGG 0.476322 2_3:+29655268 None:intergenic
CAAATCCTGATTTGGAGAGA+TGG 0.476951 2_3:-29661071 Msa0287310:five_prime_UTR
TCTTTGCATTGCGATTGCTT+AGG 0.482391 2_3:-29655320 Msa0287310:three_prime_UTR
CAGAAAGAATATGCAAAAGC+TGG 0.482907 2_3:-29659211 Msa0287310:CDS
GGGGAAATGTGCATATGTCT+AGG 0.483385 2_3:-29659318 Msa0287310:CDS
AAAAGTGCACTTGAAGATAG+AGG 0.485144 2_3:-29660249 Msa0287310:CDS
GTCACAGATAAATCTCTTGT+GGG 0.488756 2_3:-29658876 Msa0287310:CDS
TAAGCCATCCAGCCCGGTAG+TGG 0.488867 2_3:+29658949 None:intergenic
GAAACTAGAAGAGAAGAAAG+AGG 0.489348 2_3:-29660064 Msa0287310:CDS
TGGGACTTGGTGAGTACCCT+AGG 0.490644 2_3:-29660449 Msa0287310:CDS
GGAATCTGAAGTGTGAGAAA+TGG 0.490983 2_3:+29661255 None:intergenic
TCGGAAGGCACGTCAAAAGA+TGG 0.491701 2_3:+29660177 None:intergenic
TGTGTTTACTATTTGATTGG+TGG 0.492962 2_3:-29660750 Msa0287310:five_prime_UTR
GGTTGTCTTGTGTATGCAAA+AGG 0.494341 2_3:-29660888 Msa0287310:five_prime_UTR
GAATTGCTATTGTCATCATA+AGG 0.495158 2_3:-29658393 Msa0287310:intron
GAAGAGAGCGAGGTGTTATG+AGG 0.496712 2_3:-29660367 Msa0287310:CDS
CAAAATTGATGAAATAGTAC+AGG 0.497762 2_3:-29658601 Msa0287310:CDS
TACTTTGTTGTTTATTGCCA+CGG 0.500099 2_3:-29660625 Msa0287310:CDS
TATCATGGCGTTGGAGATCT+CGG 0.501474 2_3:-29660280 Msa0287310:CDS
GGTGAGAAATTATGAGAGAA+AGG 0.501768 2_3:+29661222 None:intergenic
GTGGGCTGAAACAGGATCAC+AGG 0.502534 2_3:-29659698 Msa0287310:CDS
TGAGTTTATACAGAAAACAT+TGG 0.506867 2_3:-29655167 Msa0287310:three_prime_UTR
TTCCAATGATTCATGCCATA+CGG 0.509759 2_3:+29658805 None:intergenic
GGCGTTGGAGATCTCGGATA+AGG 0.510091 2_3:-29660274 Msa0287310:CDS
AAATCCTGATTTGGAGAGAT+GGG 0.510228 2_3:-29661070 Msa0287310:five_prime_UTR
GCCTCCACTACCGGGCTGGA+TGG 0.511042 2_3:-29658953 Msa0287310:CDS
TGAAGCCTCCACTACCGGGC+TGG 0.511196 2_3:-29658957 Msa0287310:CDS
GTAATAAGATGTTTCAAAAG+AGG 0.513730 2_3:-29660581 Msa0287310:CDS
GCCGAATAATATCATGGCGT+TGG 0.518149 2_3:-29660289 Msa0287310:CDS
GGGTTTGTAATATATTGGAT+TGG 0.519970 2_3:-29660783 Msa0287310:five_prime_UTR
TCGTCTGAATGATGTGGAAA+AGG 0.524502 2_3:-29659614 Msa0287310:CDS
ACTTAGACTTTCATGAACTT+GGG 0.525905 2_3:-29659456 Msa0287310:CDS
TCAAATTAGGGCTACCCGTA+TGG 0.527716 2_3:-29658820 Msa0287310:CDS
TCCAATGATTCATGCCATAC+GGG 0.528365 2_3:+29658806 None:intergenic
GAGGGATCTTCGAGGAGCTA+TGG 0.528661 2_3:-29660562 Msa0287310:CDS
GGTTGGGAAGATAGAGATGC+AGG 0.530174 2_3:-29655260 Msa0287310:three_prime_UTR
ATTGAGAAGTTTGAACATGC+AGG 0.538923 2_3:-29658776 Msa0287310:CDS
TTGCATTCATTAATCGCCCT+AGG 0.542158 2_3:+29660432 None:intergenic
TTGCGAGTTCCTTTACAGGT+TGG 0.543117 2_3:-29655277 Msa0287310:three_prime_UTR
GCCATCCAGCCCGGTAGTGG+AGG 0.546360 2_3:+29658952 None:intergenic
CAGCGCTGGCGGCAAACATG+AGG 0.547135 2_3:-29658898 Msa0287310:CDS
TGATTGGTGGGTTGAAAATG+GGG 0.547276 2_3:-29660737 Msa0287310:exon
TTGCTTCTCTACAATTTCAT+CGG 0.549240 2_3:+29660095 None:intergenic
TAATAAGATGTTTCAAAAGA+GGG 0.549709 2_3:-29660580 Msa0287310:CDS
GGGAAATGTGCATATGTCTA+GGG 0.549993 2_3:-29659317 Msa0287310:CDS
GCTCAAGAGTTGAAGGAAGA+AGG 0.551067 2_3:-29660603 Msa0287310:CDS
GAAACTCTATTCAGAGGCTG+TGG 0.552027 2_3:-29659431 Msa0287310:CDS
TGCCACGGCTCAAGAGTTGA+AGG 0.552666 2_3:-29660610 Msa0287310:CDS
TGTTAGCTCATCTTGTGTTG+AGG 0.554112 2_3:-29659539 Msa0287310:CDS
TTTAAATAAGCCATCCAGCC+CGG 0.555273 2_3:+29658943 None:intergenic
TGAGAAAATTGAGTTGCCTC+CGG 0.555411 2_3:-29660211 Msa0287310:CDS
TTCCTTCAACTCTTGAGCCG+TGG 0.557472 2_3:+29660608 None:intergenic
GAAGCAACCTATGTGAGTGC+TGG 0.559835 2_3:+29658423 None:intergenic
AGATGAAACTGCAGCGCTGG+CGG 0.562325 2_3:-29658909 Msa0287310:CDS
GTAGTAATAGAAAAGAAGAA+AGG 0.563258 2_3:-29655360 Msa0287310:three_prime_UTR
GTGAGTGTTGTGAATTAGGA+GGG 0.575212 2_3:-29660803 Msa0287310:five_prime_UTR
CAAGGCCTATTTGACATGGC+AGG 0.577875 2_3:-29659382 Msa0287310:CDS
GGTCACAGATAAATCTCTTG+TGG 0.578048 2_3:-29658877 Msa0287310:CDS
TCAGTGAAGCCTCCACTACC+GGG 0.582496 2_3:-29658961 Msa0287310:CDS
TTGATGAAATAGTACAGGCA+TGG 0.582822 2_3:-29658596 Msa0287310:CDS
CATAGAGCCAGCACTCACAT+AGG 0.587070 2_3:-29658430 Msa0287310:three_prime_UTR
ATCTTCGAGGAGCTATGGTA+AGG 0.587773 2_3:-29660557 Msa0287310:CDS
GATGGAGCCGAATAATATCA+TGG 0.587956 2_3:-29660295 Msa0287310:CDS
CACCACACAACCGTTCTTAG+GGG 0.590340 2_3:+29659576 None:intergenic
GCTCTAGCATTGTTCAATTG+GGG 0.591057 2_3:-29659337 Msa0287310:CDS
TGCATTCATTAATCGCCCTA+GGG 0.591150 2_3:+29660433 None:intergenic
ATGGATAATGCCCCTAAGAA+CGG 0.591410 2_3:-29659586 Msa0287310:CDS
CTTCGGATGAAGAATTGAAG+TGG 0.591646 2_3:-29659717 Msa0287310:CDS
GGCTGCGTGCTATATGCAGA+TGG 0.591996 2_3:-29660469 Msa0287310:CDS
AAGTTCAATAATCTAGTACA+AGG 0.593733 2_3:+29655054 None:intergenic
GAACAAGGGTTCCAAACGAA+AGG 0.595231 2_3:+29658530 None:intergenic
GCAGAAAGAGGATGTTAAGG+AGG 0.597588 2_3:-29659944 Msa0287310:CDS
TTTCAAAAGAGGGATCTTCG+AGG 0.598758 2_3:-29660570 Msa0287310:CDS
ACCTCTGTGGAGGGCCATGT+CGG 0.600718 2_3:+29659061 None:intergenic
CTCATACAAGCTCAAAGGCA+TGG 0.603320 2_3:+29658484 None:intergenic
CAGCAGTGTTATTTGAACAG+TGG 0.607319 2_3:+29658717 None:intergenic
ATGAAAGTCTAAGTATCTGT+CGG 0.614655 2_3:+29659465 None:intergenic
ATTTGACAAGAACTGCTCCA+AGG 0.619046 2_3:+29659773 None:intergenic
GTCAAATATAGAGATCAAGA+AGG 0.619076 2_3:-29659757 Msa0287310:CDS
TTCGGATGAAGAATTGAAGT+GGG 0.621321 2_3:-29659716 Msa0287310:CDS
TCATCTTTACAACAATGCTG+AGG 0.623420 2_3:-29659035 Msa0287310:CDS
TGTGAGTGTTGTGAATTAGG+AGG 0.623584 2_3:-29660804 Msa0287310:five_prime_UTR
AAAGTGCACTTGAAGATAGA+GGG 0.624772 2_3:-29660248 Msa0287310:CDS
AGCAACTCATACAAGCTCAA+AGG 0.626181 2_3:+29658479 None:intergenic
ACTCAACAAGTAGTTTACAA+TGG 0.626456 2_3:+29655098 None:intergenic
TAAACCTAACCATAAAGGGA+AGG 0.628411 2_3:+29655199 None:intergenic
TCTGAAGTGTGAGAAATGGA+AGG 0.629088 2_3:+29661259 None:intergenic
ATGTGCATATGTCTAGGGCA+AGG 0.630423 2_3:-29659312 Msa0287310:CDS
GCTGCGTGCTATATGCAGAT+GGG 0.637013 2_3:-29660468 Msa0287310:CDS
AATGGATAAATTACAGAACA+AGG 0.638185 2_3:+29655116 None:intergenic
ATATAGATGTGTCGTATGTG+CGG 0.638921 2_3:-29660500 Msa0287310:CDS
TAGCTTCTACTATATACAGT+CGG 0.639708 2_3:+29659668 None:intergenic
CGGTTGTGTGGTGAAATCAA+AGG 0.641172 2_3:-29659566 Msa0287310:CDS
CATTGCACCAAATAAGGCTG+AGG 0.641965 2_3:-29660034 Msa0287310:CDS
TGGGATGAAACTCTATTCAG+AGG 0.642522 2_3:-29659437 Msa0287310:CDS
GAAACTTCGTCTGAATGATG+TGG 0.644851 2_3:-29659620 Msa0287310:CDS
AAGATGAAGAACCTCTGTGG+AGG 0.649172 2_3:+29659051 None:intergenic
GGGACTTGGTGAGTACCCTA+GGG 0.649406 2_3:-29660448 Msa0287310:CDS
GGCCTATTTGACATGGCAGG+AGG 0.649810 2_3:-29659379 Msa0287310:CDS
TGACTTGATCACAATCACTT+CGG 0.649854 2_3:-29659734 Msa0287310:CDS
ACTAGAAGAGAAGAAAGAGG+AGG 0.651831 2_3:-29660061 Msa0287310:CDS
GATACTCTTCTTCTGAACAA+GGG 0.652197 2_3:+29658516 None:intergenic
AGCACAAGGCCTATTTGACA+TGG 0.652886 2_3:-29659386 Msa0287310:CDS
AGATGAAGAACCTCTGTGGA+GGG 0.653251 2_3:+29659052 None:intergenic
GCTGTATGAACGCTCACTTG+TGG 0.653961 2_3:-29658846 Msa0287310:CDS
AAGCTTTGTTGAAGAGAGCG+AGG 0.655766 2_3:-29660377 Msa0287310:CDS
GTATCATTATCATACGCAGT+CGG 0.658396 2_3:+29660645 None:intergenic
TGGGCTGAAACAGGATCACA+GGG 0.676880 2_3:-29659697 Msa0287310:CDS
AATTGTAGAGAAGCAAGCCG+AGG 0.677261 2_3:-29660088 Msa0287310:CDS
AATGGGAATCATAGTAACGA+CGG 0.678439 2_3:-29660678 Msa0287310:CDS
GCAAGTAGGAGAAACAAGTG+AGG 0.679397 2_3:-29660703 Msa0287310:CDS
TGCCCCTAAGAACGGTTGTG+TGG 0.685586 2_3:-29659578 Msa0287310:CDS
TCACAGATAAATCTCTTGTG+GGG 0.699010 2_3:-29658875 Msa0287310:CDS
GATGGTTCAACATAATCCGG+AGG 0.699395 2_3:+29660195 None:intergenic
GTAATATAGATTTACCGACA+TGG 0.713914 2_3:-29659075 Msa0287310:CDS
ACCGACATGGCCCTCCACAG+AGG 0.742103 2_3:-29659062 Msa0287310:CDS
ACACAAATCCCAATTCAGAG+AGG 0.744527 2_3:+29661103 None:intergenic
GTTACAAGTGAAGAAGCACA+AGG 0.747985 2_3:-29659400 Msa0287310:CDS
GTAAAGATGAAGAACCTCTG+TGG 0.749593 2_3:+29659048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATCTTTAGTTAAAAAAA+AGG - chr2_3:29660452-29660471 Msa0287310:CDS 10.0%
!! ATATCTTTAGTTAAAAAAAA+GGG - chr2_3:29660453-29660472 Msa0287310:CDS 10.0%
!! TCTTTAAATTAAAATTAGAT+TGG + chr2_3:29661356-29661375 None:intergenic 10.0%
!!! TAATTTTAATTTAAAGAAAC+TGG - chr2_3:29661359-29661378 Msa0287310:five_prime_UTR 10.0%
!!! AAAATCTGACTTAATTTTAA+TGG + chr2_3:29657215-29657234 None:intergenic 15.0%
!! AATATATTAGCATTTCAATT+AGG + chr2_3:29658660-29658679 None:intergenic 15.0%
!!! ATTGAAATGCTAATATATTT+TGG - chr2_3:29658661-29658680 Msa0287310:intron 15.0%
!!! TTTTTTGTTCAAATCTATTT+AGG - chr2_3:29658688-29658707 Msa0287310:intron 15.0%
!! TAGATGATTAAATAACAAAT+GGG - chr2_3:29659485-29659504 Msa0287310:CDS 15.0%
!! AAAAAAAAAAAAAAAGAGGT+AGG - chr2_3:29659581-29659600 Msa0287310:CDS 15.0%
!!! ATTTTATTTTTTTTGTGAAC+AGG + chr2_3:29659792-29659811 None:intergenic 15.0%
!!! GTATAGTTTGTATTATAATT+TGG - chr2_3:29660118-29660137 Msa0287310:CDS 15.0%
!! TTAATTATAACTTAAGTGTT+CGG - chr2_3:29660156-29660175 Msa0287310:CDS 15.0%
!! TAAAGATATATTTCAATTGA+GGG + chr2_3:29660442-29660461 None:intergenic 15.0%
!! AATGAATGAAAAACTTATCT+GGG + chr2_3:29655185-29655204 None:intergenic 20.0%
!! AAATGAATGAAAAACTTATC+TGG + chr2_3:29655186-29655205 None:intergenic 20.0%
!!! TTTTCATTCATTTCAAATTC+TGG - chr2_3:29655193-29655212 Msa0287310:three_prime_UTR 20.0%
!! TTTCATTCATTTCAAATTCT+GGG - chr2_3:29655194-29655213 Msa0287310:three_prime_UTR 20.0%
!! TAATAAGATGTTTCAAAAGA+GGG - chr2_3:29655803-29655822 Msa0287310:intron 20.0%
!! TAATTTCTCTTAGTTGAAAA+AGG + chr2_3:29656571-29656590 None:intergenic 20.0%
!! AAATTAAAAGTTCGTATGAA+TGG - chr2_3:29657146-29657165 Msa0287310:intron 20.0%
!! AATTAAAAGTTCGTATGAAT+GGG - chr2_3:29657147-29657166 Msa0287310:intron 20.0%
!! AATATCTAAATTGAGCAATT+TGG - chr2_3:29658535-29658554 Msa0287310:CDS 20.0%
!! TATTTAGGAAAAATTAGAAG+AGG - chr2_3:29658703-29658722 Msa0287310:intron 20.0%
!!! TTTCTGGTATCAATATATTT+TGG + chr2_3:29659164-29659183 None:intergenic 20.0%
!! ATATATTGATACCAGAAATA+AGG - chr2_3:29659166-29659185 Msa0287310:CDS 20.0%
!! GTAGATGATTAAATAACAAA+TGG - chr2_3:29659484-29659503 Msa0287310:CDS 20.0%
!! AGATGATTAAATAACAAATG+GGG - chr2_3:29659486-29659505 Msa0287310:CDS 20.0%
!! TTGATATACAAGAATTGTAA+TGG + chr2_3:29659671-29659690 None:intergenic 20.0%
!!! GAATTTTCAATTGAATCAAT+AGG - chr2_3:29659979-29659998 Msa0287310:CDS 20.0%
!! AGTTTGTATTATAATTTGGT+TGG - chr2_3:29660122-29660141 Msa0287310:CDS 20.0%
!! AAACAACTTATTGAAAACAA+GGG - chr2_3:29660258-29660277 Msa0287310:CDS 20.0%
!!! ATTGGTGTTCTTAAATTTAA+GGG + chr2_3:29660410-29660429 None:intergenic 20.0%
!! CTAAAGATATATTTCAATTG+AGG + chr2_3:29660443-29660462 None:intergenic 20.0%
!!! TTTTAGCAACACAATTTTAA+AGG + chr2_3:29660696-29660715 None:intergenic 20.0%
!!! TAAAATTGTGTTGCTAAAAT+TGG - chr2_3:29660697-29660716 Msa0287310:CDS 20.0%
!!! ACGACATTATTTAATTTACA+AGG - chr2_3:29660730-29660749 Msa0287310:exon 20.0%
!!! TTTTAGTCCTTAAAATTGTT+AGG + chr2_3:29660802-29660821 None:intergenic 20.0%
!!! ATTTTATGAACAAAATCCAA+CGG + chr2_3:29660927-29660946 None:intergenic 20.0%
!! ATGTTGTTCTTTTTCTTTTG+TGG - chr2_3:29655031-29655050 Msa0287310:three_prime_UTR 25.0%
!! TTTTCTTGTATACAACTTTG+AGG - chr2_3:29655407-29655426 Msa0287310:three_prime_UTR 25.0%
! CAATAAAAAACCAAACACAA+AGG + chr2_3:29655476-29655495 None:intergenic 25.0%
!!! CTTTGTGTTTGGTTTTTTAT+TGG - chr2_3:29655474-29655493 Msa0287310:intron 25.0%
!! TGTAATATATTGGATTGGAT+TGG - chr2_3:29655605-29655624 Msa0287310:intron 25.0%
! TAGTGTGTTTACTATTTGAT+TGG - chr2_3:29655630-29655649 Msa0287310:intron 25.0%
! GTAATAAGATGTTTCAAAAG+AGG - chr2_3:29655802-29655821 Msa0287310:intron 25.0%
!! AACAAAGCTTTACCATATTT+TGG + chr2_3:29655996-29656015 None:intergenic 25.0%
! AAAAATTGATAAGCAGAAAG+AGG - chr2_3:29656427-29656446 Msa0287310:intron 25.0%
! GTCAATGAAGAAAAAAGTAA+TGG - chr2_3:29656461-29656480 Msa0287310:intron 25.0%
!!! AAAACAGCAAAACTTGTTTT+TGG - chr2_3:29656506-29656525 Msa0287310:intron 25.0%
!!! TTTTTGGTGATGATATAAGA+TGG - chr2_3:29656522-29656541 Msa0287310:intron 25.0%
!!! TTTTGGTGATGATATAAGAT+GGG - chr2_3:29656523-29656542 Msa0287310:intron 25.0%
! TAAGAGAAATTATTTGTGAC+AGG - chr2_3:29656579-29656598 Msa0287310:intron 25.0%
!! ATTAAGTCAGATTTTTACGA+AGG - chr2_3:29657220-29657239 Msa0287310:intron 25.0%
!!! TTTCATCAATTTTGAAACCT+AGG + chr2_3:29657776-29657795 None:intergenic 25.0%
! CAAAATTGATGAAATAGTAC+AGG - chr2_3:29657782-29657801 Msa0287310:intron 25.0%
! TATATACTGAAGTCCTTATT+GGG + chr2_3:29658243-29658262 None:intergenic 25.0%
! AACAGAATACTATATTCACA+AGG - chr2_3:29658360-29658379 Msa0287310:intron 25.0%
! AATGCTAATGTCAATAACAT+AGG - chr2_3:29658455-29658474 Msa0287310:three_prime_UTR 25.0%
! TTATATGTGTGCATATGTAT+CGG + chr2_3:29658484-29658503 None:intergenic 25.0%
! AGAAATGTCTATGATAGTAA+TGG + chr2_3:29658732-29658751 None:intergenic 25.0%
!!! CTGTTTTTAACTATACATCA+AGG + chr2_3:29658874-29658893 None:intergenic 25.0%
! AGTTGTAATTTGAGAATTTG+AGG - chr2_3:29658916-29658935 Msa0287310:CDS 25.0%
! GTTGTAATTTGAGAATTTGA+GGG - chr2_3:29658917-29658936 Msa0287310:CDS 25.0%
! TTGTAATTTGAGAATTTGAG+GGG - chr2_3:29658918-29658937 Msa0287310:CDS 25.0%
!!! ATATATTTTGGTTCCTATCA+AGG + chr2_3:29659152-29659171 None:intergenic 25.0%
!! GCTATATTATTCCTTATTTC+TGG + chr2_3:29659180-29659199 None:intergenic 25.0%
! TTATTATAATGTTAGACCCA+CGG + chr2_3:29659460-29659479 None:intergenic 25.0%
!!! TTGACTTGGATAAACTTTAT+TGG - chr2_3:29659717-29659736 Msa0287310:CDS 25.0%
! AGTTATACTTATTGTATCGA+AGG + chr2_3:29659878-29659897 None:intergenic 25.0%
! ACAATAAGTATAACTTCCTT+TGG - chr2_3:29659883-29659902 Msa0287310:CDS 25.0%
! TTTCTAACTAATCTTCATAG+TGG + chr2_3:29660080-29660099 None:intergenic 25.0%
! GAAACAACTTATTGAAAACA+AGG - chr2_3:29660257-29660276 Msa0287310:CDS 25.0%
! AACAACTTATTGAAAACAAG+GGG - chr2_3:29660259-29660278 Msa0287310:CDS 25.0%
! CATATATTCAAATCATATGC+AGG + chr2_3:29660372-29660391 None:intergenic 25.0%
!! GATTGGTGTTCTTAAATTTA+AGG + chr2_3:29660411-29660430 None:intergenic 25.0%
! AGGCTATTTAAATCATATTC+AGG + chr2_3:29660647-29660666 None:intergenic 25.0%
! ATATGATTTAAATAGCCTCT+TGG - chr2_3:29660649-29660668 Msa0287310:CDS 25.0%
! GTAGTAATAGAAAAGAAGAA+AGG - chr2_3:29661023-29661042 Msa0287310:five_prime_UTR 25.0%
! TGAGTTTATACAGAAAACAT+TGG - chr2_3:29661216-29661235 Msa0287310:five_prime_UTR 25.0%
! GAGTTTATACAGAAAACATT+GGG - chr2_3:29661217-29661236 Msa0287310:five_prime_UTR 25.0%
! AATGGATAAATTACAGAACA+AGG + chr2_3:29661270-29661289 None:intergenic 25.0%
! AAGTTCAATAATCTAGTACA+AGG + chr2_3:29661332-29661351 None:intergenic 25.0%
! ATAACATGTCTTGTTCTTGT+TGG - chr2_3:29655098-29655117 Msa0287310:three_prime_UTR 30.0%
! TAACATGTCTTGTTCTTGTT+GGG - chr2_3:29655099-29655118 Msa0287310:three_prime_UTR 30.0%
TTCAACATTCAAATCTGAGT+TGG - chr2_3:29655244-29655263 Msa0287310:three_prime_UTR 30.0%
TCAACATTCAAATCTGAGTT+GGG - chr2_3:29655245-29655264 Msa0287310:three_prime_UTR 30.0%
AGAAGAAACAAATCCTGATT+TGG - chr2_3:29655304-29655323 Msa0287310:three_prime_UTR 30.0%
! GCTACTGTTCTATATCATTT+TGG - chr2_3:29655378-29655397 Msa0287310:three_prime_UTR 30.0%
TTCTTGAAAACCTTTGTGTT+TGG - chr2_3:29655463-29655482 Msa0287310:intron 30.0%
TAGGAGGGTTTGTAATATAT+TGG - chr2_3:29655595-29655614 Msa0287310:intron 30.0%
GGGTTTGTAATATATTGGAT+TGG - chr2_3:29655600-29655619 Msa0287310:intron 30.0%
TGTGTTTACTATTTGATTGG+TGG - chr2_3:29655633-29655652 Msa0287310:intron 30.0%
GTGTTTACTATTTGATTGGT+GGG - chr2_3:29655634-29655653 Msa0287310:intron 30.0%
!! TACTTTGTTGTTTATTGCCA+CGG - chr2_3:29655758-29655777 Msa0287310:intron 30.0%
CTTGAAGTTACTCCAAAATA+TGG - chr2_3:29655981-29656000 Msa0287310:intron 30.0%
!! TTATGAGGCTTTGAATAGAT+TGG - chr2_3:29656031-29656050 Msa0287310:intron 30.0%
AAAGATGGTTCAACATAATC+CGG + chr2_3:29656194-29656213 None:intergenic 30.0%
GAAAAAGAGCAAAAAAGAGA+AGG - chr2_3:29656256-29656275 Msa0287310:intron 30.0%
TTGCTTCTCTACAATTTCAT+CGG + chr2_3:29656291-29656310 None:intergenic 30.0%
GCGTAATAAATCGAAAAAGA+AGG - chr2_3:29656394-29656413 Msa0287310:intron 30.0%
!!! CTGCTTATCAATTTTTTCCT+TGG + chr2_3:29656423-29656442 None:intergenic 30.0%
!!! ACAAGTTTTGCTGTTTTCTT+AGG + chr2_3:29656503-29656522 None:intergenic 30.0%
GTCAAATATAGAGATCAAGA+AGG - chr2_3:29656626-29656645 Msa0287310:intron 30.0%
TAGCTTCTACTATATACAGT+CGG + chr2_3:29656718-29656737 None:intergenic 30.0%
AACTGTTCAAAAATCACGTT+GGG - chr2_3:29656888-29656907 Msa0287310:intron 30.0%
ATGAAAGTCTAAGTATCTGT+CGG + chr2_3:29656921-29656940 None:intergenic 30.0%
TACTTAGACTTTCATGAACT+TGG - chr2_3:29656926-29656945 Msa0287310:intron 30.0%
ACTTAGACTTTCATGAACTT+GGG - chr2_3:29656927-29656946 Msa0287310:intron 30.0%
GTAATATAGATTTACCGACA+TGG - chr2_3:29657308-29657327 Msa0287310:intron 30.0%
TCACTTGTGGAATTCAAATT+AGG - chr2_3:29657550-29657569 Msa0287310:intron 30.0%
CACTTGTGGAATTCAAATTA+GGG - chr2_3:29657551-29657570 Msa0287310:intron 30.0%
ATACTAACACTTCTTCTAAC+AGG - chr2_3:29657750-29657769 Msa0287310:intron 30.0%
TCTTCAACAACTTGAAGAAA+AGG + chr2_3:29657931-29657950 None:intergenic 30.0%
TATGATGACAATAGCAATTC+AGG + chr2_3:29657990-29658009 None:intergenic 30.0%
! GAATTGCTATTGTCATCATA+AGG - chr2_3:29657990-29658009 Msa0287310:intron 30.0%
ACTTTCAGAGAAGCAAATAA+CGG + chr2_3:29658051-29658070 None:intergenic 30.0%
AGCTGTATTGTGTAGAATAT+TGG - chr2_3:29658194-29658213 Msa0287310:intron 30.0%
AGCAAATGAAATTCCCAATA+AGG - chr2_3:29658227-29658246 Msa0287310:intron 30.0%
CTATATACTGAAGTCCTTAT+TGG + chr2_3:29658244-29658263 None:intergenic 30.0%
TATTAGAACACCCATTAAGA+GGG - chr2_3:29658312-29658331 Msa0287310:intron 30.0%
GTTATTGACATTAGCATTGT+CGG + chr2_3:29658453-29658472 None:intergenic 30.0%
TGTAATTTGAGAATTTGAGG+GGG - chr2_3:29658919-29658938 Msa0287310:CDS 30.0%
AAATTATATGACAGGAACCA+TGG - chr2_3:29658983-29659002 Msa0287310:CDS 30.0%
GGATTTCAAAGTTTCCATAT+TGG - chr2_3:29659036-29659055 Msa0287310:CDS 30.0%
CTTTACATTGCAGTAAAATG+AGG + chr2_3:29659090-29659109 None:intergenic 30.0%
! CTCATTTTACTGCAATGTAA+AGG - chr2_3:29659088-29659107 Msa0287310:CDS 30.0%
!!! AAGGTTTTAAATTGTGGTTG+TGG + chr2_3:29659133-29659152 None:intergenic 30.0%
!!! CCTATCAAGGTTTTAAATTG+TGG + chr2_3:29659139-29659158 None:intergenic 30.0%
! CCACAATTTAAAACCTTGAT+AGG - chr2_3:29659136-29659155 Msa0287310:CDS 30.0%
!! TCGTTGTTTTCTGTTTAAGA+GGG + chr2_3:29659229-29659248 None:intergenic 30.0%
!! ATCGTTGTTTTCTGTTTAAG+AGG + chr2_3:29659230-29659249 None:intergenic 30.0%
ACGATAAAAGTGAAGAAAAC+AGG - chr2_3:29659245-29659264 Msa0287310:CDS 30.0%
! GGTTATAATGGAAGTTGAAA+GGG + chr2_3:29659341-29659360 None:intergenic 30.0%
! TGGTTATAATGGAAGTTGAA+AGG + chr2_3:29659342-29659361 None:intergenic 30.0%
GGTTAGTATGATGGTTATAA+TGG + chr2_3:29659353-29659372 None:intergenic 30.0%
! TAGACTATTGGTTAGTATGA+TGG + chr2_3:29659362-29659381 None:intergenic 30.0%
ACAAGAGAGAACTAAATGAT+GGG + chr2_3:29659396-29659415 None:intergenic 30.0%
TAAATAACAAATGGGGAGTT+AGG - chr2_3:29659493-29659512 Msa0287310:CDS 30.0%
AAATAACAAATGGGGAGTTA+GGG - chr2_3:29659494-29659513 Msa0287310:CDS 30.0%
AATAGAAAACAAGTCTCACA+CGG + chr2_3:29659631-29659650 None:intergenic 30.0%
GATTCTAATGGAACTAGATA+AGG + chr2_3:29659753-29659772 None:intergenic 30.0%
TGATTACACCACAAGAAATT+TGG - chr2_3:29659823-29659842 Msa0287310:CDS 30.0%
AATTGAATCAATAGGAGTCA+TGG - chr2_3:29659987-29660006 Msa0287310:CDS 30.0%
ATAAGCTGGAAACAACTTAT+GGG + chr2_3:29660209-29660228 None:intergenic 30.0%
AATAAGCTGGAAACAACTTA+TGG + chr2_3:29660210-29660229 None:intergenic 30.0%
CTTATTTCAATGTGCTCTTT+AGG - chr2_3:29660224-29660243 Msa0287310:CDS 30.0%
AAGGGGATATATGATTAGAT+TGG - chr2_3:29660276-29660295 Msa0287310:CDS 30.0%
! TATGATTAGATTGGTAGTTG+AGG - chr2_3:29660285-29660304 Msa0287310:CDS 30.0%
AGTTAATAAATGGAGTGGTA+TGG - chr2_3:29660314-29660333 Msa0287310:CDS 30.0%
AATTGAGGGACTAAATTGAT+TGG + chr2_3:29660428-29660447 None:intergenic 30.0%
AATGTTCACTAAAGAGATTG+GGG + chr2_3:29660605-29660624 None:intergenic 30.0%
GAATGTTCACTAAAGAGATT+GGG + chr2_3:29660606-29660625 None:intergenic 30.0%
TGAATGTTCACTAAAGAGAT+TGG + chr2_3:29660607-29660626 None:intergenic 30.0%
! ATTGCTAATTTGCAGATTTG+AGG - chr2_3:29660760-29660779 Msa0287310:five_prime_UTR 30.0%
! TTGCTAATTTGCAGATTTGA+GGG - chr2_3:29660761-29660780 Msa0287310:five_prime_UTR 30.0%
GTCCTTAAAATTGTTAGGAT+CGG + chr2_3:29660797-29660816 None:intergenic 30.0%
!!! AAATGCTGATTTGCTCATTT+TGG - chr2_3:29660819-29660838 Msa0287310:five_prime_UTR 30.0%
GATGTCACACAAATATTCAT+TGG + chr2_3:29660854-29660873 None:intergenic 30.0%
! ATGATATTAGCTTATTCCGT+TGG - chr2_3:29660908-29660927 Msa0287310:five_prime_UTR 30.0%
! TCTTTGTTATGTTATTCTGC+AGG - chr2_3:29660957-29660976 Msa0287310:five_prime_UTR 30.0%
!!! AGGTTTGTTTTGCTATTTTC+TGG - chr2_3:29660977-29660996 Msa0287310:five_prime_UTR 30.0%
!!! GGTTTGTTTTGCTATTTTCT+GGG - chr2_3:29660978-29660997 Msa0287310:five_prime_UTR 30.0%
ATCCTAAACCTAACCATAAA+GGG + chr2_3:29661191-29661210 None:intergenic 30.0%
AATCCTAAACCTAACCATAA+AGG + chr2_3:29661192-29661211 None:intergenic 30.0%
ACTCAACAAGTAGTTTACAA+TGG + chr2_3:29661288-29661307 None:intergenic 30.0%
TGAGAGAAAGGTTCAAACTT+TGG + chr2_3:29655152-29655171 None:intergenic 35.0%
GGTGAGAAATTATGAGAGAA+AGG + chr2_3:29655164-29655183 None:intergenic 35.0%
!! AAATCCTGATTTGGAGAGAT+GGG - chr2_3:29655313-29655332 Msa0287310:three_prime_UTR 35.0%
! ATGGGTATGTTTCTGTTCAA+TGG - chr2_3:29655331-29655350 Msa0287310:three_prime_UTR 35.0%
! AACTGTGAGTGTTGTGAATT+AGG - chr2_3:29655576-29655595 Msa0287310:intron 35.0%
!! TTTGATTGGTGGGTTGAAAA+TGG - chr2_3:29655644-29655663 Msa0287310:intron 35.0%
!! TTGATTGGTGGGTTGAAAAT+GGG - chr2_3:29655645-29655664 Msa0287310:intron 35.0%
GAGAAACAAGTGAGGAAAAT+GGG - chr2_3:29655688-29655707 Msa0287310:intron 35.0%
AATGGGAATCATAGTAACGA+CGG - chr2_3:29655705-29655724 Msa0287310:intron 35.0%
GTATCATTATCATACGCAGT+CGG + chr2_3:29655741-29655760 None:intergenic 35.0%
GACACATCTATATGATTTCC+CGG + chr2_3:29655876-29655895 None:intergenic 35.0%
ATATAGATGTGTCGTATGTG+CGG - chr2_3:29655883-29655902 Msa0287310:intron 35.0%
GGCGATTAATGAATGCAATT+TGG - chr2_3:29655956-29655975 Msa0287310:intron 35.0%
!!! TGTTAGTGCTGTTTTGAAGA+TGG - chr2_3:29656070-29656089 Msa0287310:intron 35.0%
TCCAACGCCATGATATTATT+CGG + chr2_3:29656098-29656117 None:intergenic 35.0%
! AAAAGTGCACTTGAAGATAG+AGG - chr2_3:29656134-29656153 Msa0287310:intron 35.0%
AAAGTGCACTTGAAGATAGA+GGG - chr2_3:29656135-29656154 Msa0287310:intron 35.0%
! CTTTTCTTTCACTGCCTTTT+CGG + chr2_3:29656228-29656247 None:intergenic 35.0%
GAAACTAGAAGAGAAGAAAG+AGG - chr2_3:29656319-29656338 Msa0287310:intron 35.0%
TAAGCAGAAAGAGGATGTTA+AGG - chr2_3:29656436-29656455 Msa0287310:intron 35.0%
TGAAAAAGGCTGCAATTAAC+CGG + chr2_3:29656557-29656576 None:intergenic 35.0%
TGACTTGATCACAATCACTT+CGG - chr2_3:29656649-29656668 Msa0287310:intron 35.0%
TTCGGATGAAGAATTGAAGT+GGG - chr2_3:29656667-29656686 Msa0287310:intron 35.0%
TCATAGAATGGATCGTGATT+AGG + chr2_3:29656743-29656762 None:intergenic 35.0%
AGACGAAGTTTCTCATAGAA+TGG + chr2_3:29656755-29656774 None:intergenic 35.0%
TGATGTGGAAAAGGTTGAAA+TGG - chr2_3:29656778-29656797 Msa0287310:intron 35.0%
GAACTGTTCAAAAATCACGT+TGG - chr2_3:29656887-29656906 Msa0287310:intron 35.0%
! AGCTCTAGCATTGTTCAATT+GGG - chr2_3:29657045-29657064 Msa0287310:intron 35.0%
CAGAAAGAATATGCAAAAGC+TGG - chr2_3:29657172-29657191 Msa0287310:intron 35.0%
TCATCTTTACAACAATGCTG+AGG - chr2_3:29657348-29657367 Msa0287310:intron 35.0%
TGGAAAAAGGAATGCTGATA+TGG - chr2_3:29657377-29657396 Msa0287310:intron 35.0%
GGAAAAAGGAATGCTGATAT+GGG - chr2_3:29657378-29657397 Msa0287310:intron 35.0%
GTCACAGATAAATCTCTTGT+GGG - chr2_3:29657507-29657526 Msa0287310:intron 35.0%
TCACAGATAAATCTCTTGTG+GGG - chr2_3:29657508-29657527 Msa0287310:intron 35.0%
TTCCAATGATTCATGCCATA+CGG + chr2_3:29657581-29657600 None:intergenic 35.0%
ATTGAGAAGTTTGAACATGC+AGG - chr2_3:29657607-29657626 Msa0287310:intron 35.0%
AACATTACAGCTACATCTGT+TGG + chr2_3:29657640-29657659 None:intergenic 35.0%
TCAAATAACACTGCTGTAGA+TGG - chr2_3:29657673-29657692 Msa0287310:intron 35.0%
TTGATGAAATAGTACAGGCA+TGG - chr2_3:29657787-29657806 Msa0287310:intron 35.0%
GAAGCTAAAAAGTTGCAGAA+AGG - chr2_3:29657822-29657841 Msa0287310:intron 35.0%
GATACTCTTCTTCTGAACAA+GGG + chr2_3:29657870-29657889 None:intergenic 35.0%
CTTTCAGAGAAGCAAATAAC+GGG + chr2_3:29658050-29658069 None:intergenic 35.0%
! AGCATTAGTCTACGTGATTA+TGG - chr2_3:29658262-29658281 Msa0287310:intron 35.0%
TCTACGTGATTATGGAAAGT+TGG - chr2_3:29658270-29658289 Msa0287310:intron 35.0%
CTATTAGAACACCCATTAAG+AGG - chr2_3:29658311-29658330 Msa0287310:intron 35.0%
CTGTTTCAAACCCTCTTAAT+GGG + chr2_3:29658325-29658344 None:intergenic 35.0%
! TTTGAGACACTTGTTTGAGT+TGG - chr2_3:29658804-29658823 Msa0287310:CDS 35.0%
AAACAGTTACTGTGTCAAGT+AGG - chr2_3:29658888-29658907 Msa0287310:CDS 35.0%
GTAATTTGAGAATTTGAGGG+GGG - chr2_3:29658920-29658939 Msa0287310:CDS 35.0%
!!! GGAACCATGGTTTTAAATTG+AGG - chr2_3:29658996-29659015 Msa0287310:CDS 35.0%
! CAGACCTCAATTTAAAACCA+TGG + chr2_3:29659003-29659022 None:intergenic 35.0%
!! AACTTTGAAATCCGCAATTG+CGG + chr2_3:29659029-29659048 None:intergenic 35.0%
TGCAGTAAAATGAGGAAATG+CGG + chr2_3:29659082-29659101 None:intergenic 35.0%
TGTGGTTACACTTTACACTA+TGG + chr2_3:29659115-29659134 None:intergenic 35.0%
!! GGATATTTTGGAAAAGGCAT+GGG + chr2_3:29659302-29659321 None:intergenic 35.0%
!! GGTAAGGGATATTTTGGAAA+AGG + chr2_3:29659308-29659327 None:intergenic 35.0%
CACAAGAGAGAACTAAATGA+TGG + chr2_3:29659397-29659416 None:intergenic 35.0%
!!! GAGACACTTTTGATTTCAGA+CGG - chr2_3:29659516-29659535 Msa0287310:CDS 35.0%
! TTTTTCTCTTTCTGACAAGC+AGG + chr2_3:29659559-29659578 None:intergenic 35.0%
AAAAAGAGGTAGGAGAATCT+AGG - chr2_3:29659591-29659610 Msa0287310:CDS 35.0%
ATAGAAAACAAGTCTCACAC+GGG + chr2_3:29659630-29659649 None:intergenic 35.0%
CACTACTAAGTTATAGAGTG+AGG - chr2_3:29659693-29659712 Msa0287310:CDS 35.0%
TTATAGAGTGAGGTTTGACT+TGG - chr2_3:29659703-29659722 Msa0287310:CDS 35.0%
TTCCATTAGAATCCCTTTAG+AGG - chr2_3:29659760-29659779 Msa0287310:CDS 35.0%
AACAGGAAAACACCTCTAAA+GGG + chr2_3:29659775-29659794 None:intergenic 35.0%
AATCCATTAACTCGATCCAA+AGG + chr2_3:29659902-29659921 None:intergenic 35.0%
!! TTAATGGATTTCATTGCCCT+AGG - chr2_3:29659912-29659931 Msa0287310:CDS 35.0%
CATGCACAATAATTGACCTA+GGG + chr2_3:29659931-29659950 None:intergenic 35.0%
ACATGCACAATAATTGACCT+AGG + chr2_3:29659932-29659951 None:intergenic 35.0%
GCACACTGAATTAATGGAAA+TGG - chr2_3:29660011-29660030 Msa0287310:CDS 35.0%
! AAGAGCACATTGAAATAAGC+TGG + chr2_3:29660223-29660242 None:intergenic 35.0%
GAGGTGAGAGAGTTAATAAA+TGG - chr2_3:29660304-29660323 Msa0287310:CDS 35.0%
GAGAGAGTTAATAAATGGAG+TGG - chr2_3:29660309-29660328 Msa0287310:CDS 35.0%
AATAAATGGAGTGGTATGGA+AGG - chr2_3:29660318-29660337 Msa0287310:CDS 35.0%
ATATGCAGGTATTATGCAAG+GGG + chr2_3:29660358-29660377 None:intergenic 35.0%
CATATGCAGGTATTATGCAA+GGG + chr2_3:29660359-29660378 None:intergenic 35.0%
TCATATGCAGGTATTATGCA+AGG + chr2_3:29660360-29660379 None:intergenic 35.0%
ATGTTCACTAAAGAGATTGG+GGG + chr2_3:29660604-29660623 None:intergenic 35.0%
ACTAATCTTGATACACCAAG+AGG + chr2_3:29660667-29660686 None:intergenic 35.0%
! GACCGATCCTAACAATTTTA+AGG - chr2_3:29660792-29660811 Msa0287310:five_prime_UTR 35.0%
TAAACCTAACCATAAAGGGA+AGG + chr2_3:29661187-29661206 None:intergenic 35.0%
TTCCCTTTATGGTTAGGTTT+AGG - chr2_3:29661186-29661205 Msa0287310:five_prime_UTR 35.0%
! TCTGAAGTGTGAGAAATGGA+AGG + chr2_3:29655127-29655146 None:intergenic 40.0%
! GGAATCTGAAGTGTGAGAAA+TGG + chr2_3:29655131-29655150 None:intergenic 40.0%
TTCTTGTCTCCTCTCTGAAT+TGG - chr2_3:29655271-29655290 Msa0287310:three_prime_UTR 40.0%
TCTTGTCTCCTCTCTGAATT+GGG - chr2_3:29655272-29655291 Msa0287310:three_prime_UTR 40.0%
ACACAAATCCCAATTCAGAG+AGG + chr2_3:29655283-29655302 None:intergenic 40.0%
!! CAAATCCTGATTTGGAGAGA+TGG - chr2_3:29655312-29655331 Msa0287310:three_prime_UTR 40.0%
GGTTGTCTTGTGTATGCAAA+AGG - chr2_3:29655495-29655514 Msa0287310:intron 40.0%
! TGTGAGTGTTGTGAATTAGG+AGG - chr2_3:29655579-29655598 Msa0287310:intron 40.0%
! GTGAGTGTTGTGAATTAGGA+GGG - chr2_3:29655580-29655599 Msa0287310:intron 40.0%
!! TGATTGGTGGGTTGAAAATG+GGG - chr2_3:29655646-29655665 Msa0287310:intron 40.0%
GGGAAGAAAAAGAAGCAAGT+AGG - chr2_3:29655666-29655685 Msa0287310:intron 40.0%
GGAGAAACAAGTGAGGAAAA+TGG - chr2_3:29655687-29655706 Msa0287310:intron 40.0%
TTTCAAAAGAGGGATCTTCG+AGG - chr2_3:29655813-29655832 Msa0287310:intron 40.0%
TGCATTCATTAATCGCCCTA+GGG + chr2_3:29655953-29655972 None:intergenic 40.0%
TTGCATTCATTAATCGCCCT+AGG + chr2_3:29655954-29655973 None:intergenic 40.0%
GATGGAGCCGAATAATATCA+TGG - chr2_3:29656088-29656107 Msa0287310:intron 40.0%
! TGAGAAAATTGAGTTGCCTC+CGG - chr2_3:29656172-29656191 Msa0287310:intron 40.0%
GAGCAAAAAAGAGAAGGTGA+AGG - chr2_3:29656262-29656281 Msa0287310:intron 40.0%
!! CTTCTCTTCTAGTTTCTCCT+CGG + chr2_3:29656315-29656334 None:intergenic 40.0%
ACTAGAAGAGAAGAAAGAGG+AGG - chr2_3:29656322-29656341 Msa0287310:intron 40.0%
GGACAACATTGCACCAAATA+AGG - chr2_3:29656343-29656362 Msa0287310:intron 40.0%
! TATAAGATGGGCTCAATTGC+CGG - chr2_3:29656535-29656554 Msa0287310:intron 40.0%
ATTTGACAAGAACTGCTCCA+AGG + chr2_3:29656613-29656632 None:intergenic 40.0%
CTTCGGATGAAGAATTGAAG+TGG - chr2_3:29656666-29656685 Msa0287310:intron 40.0%
GAAACTTCGTCTGAATGATG+TGG - chr2_3:29656763-29656782 Msa0287310:intron 40.0%
TCGTCTGAATGATGTGGAAA+AGG - chr2_3:29656769-29656788 Msa0287310:intron 40.0%
ATGGATAATGCCCCTAAGAA+CGG - chr2_3:29656797-29656816 Msa0287310:intron 40.0%
TGTTAGCTCATCTTGTGTTG+AGG - chr2_3:29656844-29656863 Msa0287310:intron 40.0%
TGGGATGAAACTCTATTCAG+AGG - chr2_3:29656946-29656965 Msa0287310:intron 40.0%
! GTTACAAGTGAAGAAGCACA+AGG - chr2_3:29656983-29657002 Msa0287310:intron 40.0%
! CAGCTCTAGCATTGTTCAAT+TGG - chr2_3:29657044-29657063 Msa0287310:intron 40.0%
GCTCTAGCATTGTTCAATTG+GGG - chr2_3:29657046-29657065 Msa0287310:intron 40.0%
GGGAAATGTGCATATGTCTA+GGG - chr2_3:29657066-29657085 Msa0287310:intron 40.0%
TCGAACAAGCGAAACTTTCT+TGG - chr2_3:29657269-29657288 Msa0287310:intron 40.0%
GTAAAGATGAAGAACCTCTG+TGG + chr2_3:29657338-29657357 None:intergenic 40.0%
CAACAATGCTGAGGAGAATA+TGG - chr2_3:29657357-29657376 Msa0287310:intron 40.0%
GCTGAGGAGAATATGGAAAA+AGG - chr2_3:29657364-29657383 Msa0287310:intron 40.0%
TTTAAATAAGCCATCCAGCC+CGG + chr2_3:29657443-29657462 None:intergenic 40.0%
GGTCACAGATAAATCTCTTG+TGG - chr2_3:29657506-29657525 Msa0287310:intron 40.0%
TCCAATGATTCATGCCATAC+GGG + chr2_3:29657580-29657599 None:intergenic 40.0%
!! CAGCAGTGTTATTTGAACAG+TGG + chr2_3:29657669-29657688 None:intergenic 40.0%
AGGAGTTTCATCCTTTCGTT+TGG - chr2_3:29657842-29657861 Msa0287310:intron 40.0%
CGATACTCTTCTTCTGAACA+AGG + chr2_3:29657871-29657890 None:intergenic 40.0%
AGCAACTCATACAAGCTCAA+AGG + chr2_3:29657907-29657926 None:intergenic 40.0%
TCATGCACATAAACAAACGC+AGG + chr2_3:29658087-29658106 None:intergenic 40.0%
CCTGTTTCAAACCCTCTTAA+TGG + chr2_3:29658326-29658345 None:intergenic 40.0%
! CCATTAAGAGGGTTTGAAAC+AGG - chr2_3:29658323-29658342 Msa0287310:intron 40.0%
! TAAGAGGGTTTGAAACAGGA+AGG - chr2_3:29658327-29658346 Msa0287310:intron 40.0%
! AAGAGGGTTTGAAACAGGAA+GGG - chr2_3:29658328-29658347 Msa0287310:intron 40.0%
TGTCAGAGTCAGTGTTTCAT+AGG + chr2_3:29658398-29658417 None:intergenic 40.0%
!! ATGAAACACTGACTCTGACA+CGG - chr2_3:29658398-29658417 Msa0287310:three_prime_UTR 40.0%
GTTGTGACTGAAGAGTTCTA+AGG - chr2_3:29658754-29658773 Msa0287310:CDS 40.0%
!! AGAGTTCTAAGGTGTGTCTA+AGG - chr2_3:29658765-29658784 Msa0287310:CDS 40.0%
TTGGTAGACACGTGTCATAT+GGG - chr2_3:29658823-29658842 Msa0287310:CDS 40.0%
GAAGAGAGAGTTTGTAACCA+TGG - chr2_3:29658956-29658975 Msa0287310:CDS 40.0%
ATGCGGTCAAAATTGTGGTT+GGG + chr2_3:29659065-29659084 None:intergenic 40.0%
AATGCGGTCAAAATTGTGGT+TGG + chr2_3:29659066-29659085 None:intergenic 40.0%
AGGAAATGCGGTCAAAATTG+TGG + chr2_3:29659070-29659089 None:intergenic 40.0%
GCTCTGCTCTTTACAATTTG+AGG - chr2_3:29659198-29659217 Msa0287310:CDS 40.0%
ATGGGCAAGCATCATGTTTA+AGG + chr2_3:29659284-29659303 None:intergenic 40.0%
!! GGGATATTTTGGAAAAGGCA+TGG + chr2_3:29659303-29659322 None:intergenic 40.0%
! AGAGAACTAAATGATGGGAC+AGG + chr2_3:29659391-29659410 None:intergenic 40.0%
! TTGATTTCAGACGGATTCAG+CGG - chr2_3:29659525-29659544 Msa0287310:CDS 40.0%
! CACCTCTAAAGGGATTCTAA+TGG + chr2_3:29659765-29659784 None:intergenic 40.0%
GAACAGGAAAACACCTCTAA+AGG + chr2_3:29659776-29659795 None:intergenic 40.0%
CAGATCTGCCAAATTTCTTG+TGG + chr2_3:29659834-29659853 None:intergenic 40.0%
CTTCCTTTGGATCGAGTTAA+TGG - chr2_3:29659896-29659915 Msa0287310:CDS 40.0%
CATGGAGCACACTGAATTAA+TGG - chr2_3:29660005-29660024 Msa0287310:CDS 40.0%
!! GTGCTCTTTAGGATAGCTTA+TGG - chr2_3:29660235-29660254 Msa0287310:CDS 40.0%
TATGCAGGTATTATGCAAGG+GGG + chr2_3:29660357-29660376 None:intergenic 40.0%
AGTTAAAAAAAAGGGCAGCC+CGG - chr2_3:29660461-29660480 Msa0287310:CDS 40.0%
!!! AAGGGGTACCACCATTTTTT+GGG - chr2_3:29660516-29660535 Msa0287310:CDS 40.0%
CTACACAACCCAAAAAATGG+TGG + chr2_3:29660527-29660546 None:intergenic 40.0%
!!! CACCATTTTTTGGGTTGTGT+AGG - chr2_3:29660525-29660544 Msa0287310:CDS 40.0%
TGCCTACACAACCCAAAAAA+TGG + chr2_3:29660530-29660549 None:intergenic 40.0%
TCTTTGCATTGCGATTGCTT+AGG - chr2_3:29661063-29661082 Msa0287310:five_prime_UTR 40.0%
TCTATCTTCCCAACCTGTAA+AGG + chr2_3:29661118-29661137 None:intergenic 40.0%
CTCATATTGCCTTCCCTTTA+TGG - chr2_3:29661175-29661194 Msa0287310:five_prime_UTR 40.0%
ATTGCCTTCCCTTTATGGTT+AGG - chr2_3:29661180-29661199 Msa0287310:five_prime_UTR 40.0%
CATACCCATCTCTCCAAATC+AGG + chr2_3:29655320-29655339 None:intergenic 45.0%
GCAAGTAGGAGAAACAAGTG+AGG - chr2_3:29655680-29655699 Msa0287310:intron 45.0%
GCTCAAGAGTTGAAGGAAGA+AGG - chr2_3:29655780-29655799 Msa0287310:intron 45.0%
ATCTTCGAGGAGCTATGGTA+AGG - chr2_3:29655826-29655845 Msa0287310:intron 45.0%
!! GAAAGCGCTCAAATTGCTTC+CGG - chr2_3:29655854-29655873 Msa0287310:intron 45.0%
! AAAGCGCTCAAATTGCTTCC+GGG - chr2_3:29655855-29655874 Msa0287310:intron 45.0%
GTCGTATGTGCGGAGTAATA+TGG - chr2_3:29655893-29655912 Msa0287310:intron 45.0%
TGCTATATGCAGATGGGACT+TGG - chr2_3:29655921-29655940 Msa0287310:intron 45.0%
!! AAGCTTTGTTGAAGAGAGCG+AGG - chr2_3:29656006-29656025 Msa0287310:intron 45.0%
GCCGAATAATATCATGGCGT+TGG - chr2_3:29656094-29656113 Msa0287310:intron 45.0%
! TATCATGGCGTTGGAGATCT+CGG - chr2_3:29656103-29656122 Msa0287310:intron 45.0%
GATGGTTCAACATAATCCGG+AGG + chr2_3:29656191-29656210 None:intergenic 45.0%
! TTTTGACGTGCCTTCCGAAA+AGG - chr2_3:29656211-29656230 Msa0287310:intron 45.0%
! TCTTTCACTGCCTTTTCGGA+AGG + chr2_3:29656224-29656243 None:intergenic 45.0%
AATTGTAGAGAAGCAAGCCG+AGG - chr2_3:29656295-29656314 Msa0287310:intron 45.0%
CATTGCACCAAATAAGGCTG+AGG - chr2_3:29656349-29656368 Msa0287310:intron 45.0%
!! TGATCGTCCTCAGCCTTATT+TGG + chr2_3:29656359-29656378 None:intergenic 45.0%
ATCGAAAAAGAAGGCAGCCA+AGG - chr2_3:29656403-29656422 Msa0287310:intron 45.0%
GCAGAAAGAGGATGTTAAGG+AGG - chr2_3:29656439-29656458 Msa0287310:intron 45.0%
!! GAATTGAAGTGGGCTGAAAC+AGG - chr2_3:29656677-29656696 Msa0287310:intron 45.0%
TCACCACACAACCGTTCTTA+GGG + chr2_3:29656811-29656830 None:intergenic 45.0%
TTCACCACACAACCGTTCTT+AGG + chr2_3:29656812-29656831 None:intergenic 45.0%
CGGTTGTGTGGTGAAATCAA+AGG - chr2_3:29656817-29656836 Msa0287310:intron 45.0%
GCTCATCTTGTGTTGAGGAT+TGG - chr2_3:29656849-29656868 Msa0287310:intron 45.0%
GAAACTCTATTCAGAGGCTG+TGG - chr2_3:29656952-29656971 Msa0287310:intron 45.0%
AGCACAAGGCCTATTTGACA+TGG - chr2_3:29656997-29657016 Msa0287310:intron 45.0%
TACCTCCTGCCATGTCAAAT+AGG + chr2_3:29657009-29657028 None:intergenic 45.0%
ATGCTAGAGCTGTCATCTCT+TGG + chr2_3:29657036-29657055 None:intergenic 45.0%
GGGGAAATGTGCATATGTCT+AGG - chr2_3:29657065-29657084 Msa0287310:intron 45.0%
! ATGTGCATATGTCTAGGGCA+AGG - chr2_3:29657071-29657090 Msa0287310:intron 45.0%
TACGAAGGCTTTCTTGCTCT+TGG - chr2_3:29657235-29657254 Msa0287310:intron 45.0%
AGATGAAGAACCTCTGTGGA+GGG + chr2_3:29657334-29657353 None:intergenic 45.0%
AAGATGAAGAACCTCTGTGG+AGG + chr2_3:29657335-29657354 None:intergenic 45.0%
TCAAATTAGGGCTACCCGTA+TGG - chr2_3:29657563-29657582 Msa0287310:intron 45.0%
ACCCGTATGGCATGAATCAT+TGG - chr2_3:29657576-29657595 Msa0287310:intron 45.0%
ACACTTCTTCTAACAGGCCT+AGG - chr2_3:29657756-29657775 Msa0287310:intron 45.0%
GAACAAGGGTTCCAAACGAA+AGG + chr2_3:29657856-29657875 None:intergenic 45.0%
CTCATACAAGCTCAAAGGCA+TGG + chr2_3:29657902-29657921 None:intergenic 45.0%
! AGAGGGTTTGAAACAGGAAG+GGG - chr2_3:29658329-29658348 Msa0287310:intron 45.0%
TGACATTAGCATTGTCGGCA+TGG + chr2_3:29658448-29658467 None:intergenic 45.0%
! GTTGGTAGACACGTGTCATA+TGG - chr2_3:29658822-29658841 Msa0287310:CDS 45.0%
TTGTGGTTGGGACACCAATA+TGG + chr2_3:29659053-29659072 None:intergenic 45.0%
! GCAAGCATCATGTTTAAGGC+AGG + chr2_3:29659280-29659299 None:intergenic 45.0%
! GTGGAGGGTAAGGGATATTT+TGG + chr2_3:29659314-29659333 None:intergenic 45.0%
AGTTGAAAGGGCAAAGTGGA+GGG + chr2_3:29659329-29659348 None:intergenic 45.0%
AAGTTGAAAGGGCAAAGTGG+AGG + chr2_3:29659330-29659349 None:intergenic 45.0%
TGGAAGTTGAAAGGGCAAAG+TGG + chr2_3:29659333-29659352 None:intergenic 45.0%
! GAACTAAATGATGGGACAGG+TGG + chr2_3:29659388-29659407 None:intergenic 45.0%
ATGTTAGACCCACGGTTGTT+AGG + chr2_3:29659452-29659471 None:intergenic 45.0%
ATGCAGGTATTATGCAAGGG+GGG + chr2_3:29660356-29660375 None:intergenic 45.0%
!!! GAAGGGGTACCACCATTTTT+TGG - chr2_3:29660515-29660534 Msa0287310:CDS 45.0%
TGTTGTCACGTGACTGAACA+GGG + chr2_3:29660559-29660578 None:intergenic 45.0%
TTGTTGTCACGTGACTGAAC+AGG + chr2_3:29660560-29660579 None:intergenic 45.0%
CTTAGGTGTTCCAGGAATGT+AGG - chr2_3:29661080-29661099 Msa0287310:five_prime_UTR 45.0%
GAGTTTGCGAGTTCCTTTAC+AGG - chr2_3:29661102-29661121 Msa0287310:five_prime_UTR 45.0%
TTGCGAGTTCCTTTACAGGT+TGG - chr2_3:29661106-29661125 Msa0287310:five_prime_UTR 45.0%
TGCGAGTTCCTTTACAGGTT+GGG - chr2_3:29661107-29661126 Msa0287310:five_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAAAAAG+AGG - chr2_3:29659577-29659596 Msa0287310:CDS 5.0%
TTCCTTCAACTCTTGAGCCG+TGG + chr2_3:29655778-29655797 None:intergenic 50.0%
GCTGCGTGCTATATGCAGAT+GGG - chr2_3:29655915-29655934 Msa0287310:intron 50.0%
! GAAGAGAGCGAGGTGTTATG+AGG - chr2_3:29656016-29656035 Msa0287310:intron 50.0%
! TCGGAAGGCACGTCAAAAGA+TGG + chr2_3:29656209-29656228 None:intergenic 50.0%
CAAGAACTGCTCCAAGGCTT+GGG + chr2_3:29656607-29656626 None:intergenic 50.0%
ACAAGAACTGCTCCAAGGCT+TGG + chr2_3:29656608-29656627 None:intergenic 50.0%
TGGGCTGAAACAGGATCACA+GGG - chr2_3:29656686-29656705 Msa0287310:intron 50.0%
CACCACACAACCGTTCTTAG+GGG + chr2_3:29656810-29656829 None:intergenic 50.0%
CAAGGCCTATTTGACATGGC+AGG - chr2_3:29657001-29657020 Msa0287310:intron 50.0%
ATCAGATGAAACTGCAGCGC+TGG - chr2_3:29657471-29657490 Msa0287310:intron 50.0%
GCTGTATGAACGCTCACTTG+TGG - chr2_3:29657537-29657556 Msa0287310:intron 50.0%
CATAGAGCCAGCACTCACAT+AGG - chr2_3:29657953-29657972 Msa0287310:intron 50.0%
GAAGCAACCTATGTGAGTGC+TGG + chr2_3:29657963-29657982 None:intergenic 50.0%
! ACTGACTCTGACACGGATGT+CGG - chr2_3:29658405-29658424 Msa0287310:three_prime_UTR 50.0%
GACACGTGTCATATGGGTGT+CGG - chr2_3:29658829-29658848 Msa0287310:CDS 50.0%
!! TGTCATATGGGTGTCGGACA+CGG - chr2_3:29658835-29658854 Msa0287310:CDS 50.0%
TTGAGGGGGGCAAGAAAAAC+TGG - chr2_3:29658933-29658952 Msa0287310:CDS 50.0%
TGAGGGGGGCAAGAAAAACT+GGG - chr2_3:29658934-29658953 Msa0287310:CDS 50.0%
AAGGGCAAAGTGGAGGGTAA+GGG + chr2_3:29659323-29659342 None:intergenic 50.0%
AAAGGGCAAAGTGGAGGGTA+AGG + chr2_3:29659324-29659343 None:intergenic 50.0%
GACAGGTGGCAGTAGACTAT+TGG + chr2_3:29659374-29659393 None:intergenic 50.0%
ACGGTTGTTAGGAGCTACAG+GGG + chr2_3:29659441-29659460 None:intergenic 50.0%
CACGGTTGTTAGGAGCTACA+GGG + chr2_3:29659442-29659461 None:intergenic 50.0%
CTGTAGCTCCTAACAACCGT+GGG - chr2_3:29659441-29659460 Msa0287310:CDS 50.0%
TGCAGGTATTATGCAAGGGG+GGG + chr2_3:29660355-29660374 None:intergenic 50.0%
TTCCCAGACCTTGCGTATGT+GGG + chr2_3:29660498-29660517 None:intergenic 50.0%
ACATACGCAAGGTCTGGGAA+GGG - chr2_3:29660498-29660517 Msa0287310:CDS 50.0%
TCACGTGACTGAACAGGGTA+AGG + chr2_3:29660554-29660573 None:intergenic 50.0%
ACAACTTTACCGCTACGCCA+AGG - chr2_3:29660576-29660595 Msa0287310:CDS 50.0%
TAAAGAGATTGGGGGAGCCT+TGG + chr2_3:29660596-29660615 None:intergenic 50.0%
TGCGATTGCTTAGGTGTTCC+AGG - chr2_3:29661072-29661091 Msa0287310:five_prime_UTR 50.0%
CTCGCAAACTCCTACATTCC+TGG + chr2_3:29661093-29661112 None:intergenic 50.0%
GGTTGGGAAGATAGAGATGC+AGG - chr2_3:29661123-29661142 Msa0287310:five_prime_UTR 50.0%
TGCCACGGCTCAAGAGTTGA+AGG - chr2_3:29655773-29655792 Msa0287310:intron 55.0%
GAGGGATCTTCGAGGAGCTA+TGG - chr2_3:29655821-29655840 Msa0287310:intron 55.0%
GGCTGCGTGCTATATGCAGA+TGG - chr2_3:29655914-29655933 Msa0287310:intron 55.0%
!! TGGGACTTGGTGAGTACCCT+AGG - chr2_3:29655934-29655953 Msa0287310:intron 55.0%
!! GGGACTTGGTGAGTACCCTA+GGG - chr2_3:29655935-29655954 Msa0287310:intron 55.0%
! GGCGTTGGAGATCTCGGATA+AGG - chr2_3:29656109-29656128 Msa0287310:intron 55.0%
TGTGACAGGTTCCCAAGCCT+TGG - chr2_3:29656593-29656612 Msa0287310:intron 55.0%
! GTGGGCTGAAACAGGATCAC+AGG - chr2_3:29656685-29656704 Msa0287310:intron 55.0%
TGCCCCTAAGAACGGTTGTG+TGG - chr2_3:29656805-29656824 Msa0287310:intron 55.0%
GGCCTATTTGACATGGCAGG+AGG - chr2_3:29657004-29657023 Msa0287310:intron 55.0%
CTCAGTGAAGCCTCCACTAC+CGG - chr2_3:29657421-29657440 Msa0287310:intron 55.0%
TCAGTGAAGCCTCCACTACC+GGG - chr2_3:29657422-29657441 Msa0287310:intron 55.0%
! AGATGAAACTGCAGCGCTGG+CGG - chr2_3:29657474-29657493 Msa0287310:intron 55.0%
! GGGTTTGAAACAGGAAGGGG+AGG - chr2_3:29658332-29658351 Msa0287310:intron 55.0%
CGGTTGTTAGGAGCTACAGG+GGG + chr2_3:29659440-29659459 None:intergenic 55.0%
CCACGGTTGTTAGGAGCTAC+AGG + chr2_3:29659443-29659462 None:intergenic 55.0%
CCTGTAGCTCCTAACAACCG+TGG - chr2_3:29659440-29659459 Msa0287310:CDS 55.0%
! TATGTGGGAGCCTTGTGCAC+CGG + chr2_3:29660483-29660502 None:intergenic 55.0%
ACAAGGCTCCCACATACGCA+AGG - chr2_3:29660487-29660506 Msa0287310:CDS 55.0%
CTCCCACATACGCAAGGTCT+GGG - chr2_3:29660493-29660512 Msa0287310:CDS 55.0%
CTTCCCAGACCTTGCGTATG+TGG + chr2_3:29660499-29660518 None:intergenic 55.0%
CACATACGCAAGGTCTGGGA+AGG - chr2_3:29660497-29660516 Msa0287310:CDS 55.0%
CATACGCAAGGTCTGGGAAG+GGG - chr2_3:29660499-29660518 Msa0287310:CDS 55.0%
ACCTCTGTGGAGGGCCATGT+CGG + chr2_3:29657325-29657344 None:intergenic 60.0%
TAAGCCATCCAGCCCGGTAG+TGG + chr2_3:29657437-29657456 None:intergenic 60.0%
GAGGTCTGCAGCCGCAATTG+CGG - chr2_3:29659015-29659034 Msa0287310:CDS 60.0%
! ATGTGGGAGCCTTGTGCACC+GGG + chr2_3:29660482-29660501 None:intergenic 60.0%
GCTCCCACATACGCAAGGTC+TGG - chr2_3:29660492-29660511 Msa0287310:CDS 60.0%
ACCGACATGGCCCTCCACAG+AGG - chr2_3:29657321-29657340 Msa0287310:intron 65.0%
TGAAGCCTCCACTACCGGGC+TGG - chr2_3:29657426-29657445 Msa0287310:intron 65.0%
!! CAGCGCTGGCGGCAAACATG+AGG - chr2_3:29657485-29657504 Msa0287310:intron 65.0%
!! GGGTGTCGGACACGGAGACA+TGG - chr2_3:29658843-29658862 Msa0287310:CDS 65.0%
AAAGGGCAGCCCGGTGCACA+AGG - chr2_3:29660470-29660489 Msa0287310:CDS 65.0%
TTGGGGGAGCCTTGGCGTAG+CGG + chr2_3:29660588-29660607 None:intergenic 65.0%
! GCCTCCACTACCGGGCTGGA+TGG - chr2_3:29657430-29657449 Msa0287310:intron 70.0%
! GCCATCCAGCCCGGTAGTGG+AGG + chr2_3:29657434-29657453 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 29654983 29661422 29654983 ID=Msa0287310;Name=Msa0287310
chr2_3 mRNA 29654983 29661422 29654983 ID=Msa0287310-mRNA-1;Parent=Msa0287310;Name=Msa0287310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=680|1|1|1|0.5|0.33|3|535|726
chr2_3 exon 29654983 29655426 29654983 ID=Msa0287310-mRNA-1:exon:10364;Parent=Msa0287310-mRNA-1
chr2_3 exon 29658394 29658633 29658394 ID=Msa0287310-mRNA-1:exon:10363;Parent=Msa0287310-mRNA-1
chr2_3 exon 29658711 29661422 29658711 ID=Msa0287310-mRNA-1:exon:10362;Parent=Msa0287310-mRNA-1
chr2_3 five_prime_UTR 29660743 29661422 29660743 ID=Msa0287310-mRNA-1:five_prime_utr;Parent=Msa0287310-mRNA-1
chr2_3 CDS 29658711 29660742 29658711 ID=Msa0287310-mRNA-1:cds;Parent=Msa0287310-mRNA-1
chr2_3 CDS 29658485 29658633 29658485 ID=Msa0287310-mRNA-1:cds;Parent=Msa0287310-mRNA-1
chr2_3 three_prime_UTR 29658394 29658484 29658394 ID=Msa0287310-mRNA-1:three_prime_utr;Parent=Msa0287310-mRNA-1
chr2_3 three_prime_UTR 29654983 29655426 29654983 ID=Msa0287310-mRNA-1:three_prime_utr;Parent=Msa0287310-mRNA-1
Gene Sequence

>Msa0287310

ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAGGAAAATGGGAATCATAGTAACGACGGTGATAAAAGTCCGACTGCGTATGATAATGATACTTTGTTGTTTATTGCCACGGCTCAAGAGTTGAAGGAAGAAGGTAATAAGATGTTTCAAAAGAGGGATCTTCGAGGAGCTATGGTAAGGTATGAGAAAGCGCTCAAATTGCTTCCGGGAAATCATATAGATGTGTCGTATGTGCGGAGTAATATGGCTGCGTGCTATATGCAGATGGGACTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATTTGGCTCTTGAAGTTACTCCAAAATATGGTAAAGCTTTGTTGAAGAGAGCGAGGTGTTATGAGGCTTTGAATAGATTGGATTTAGCATTGAGAGATGTTAGTGCTGTTTTGAAGATGGAGCCGAATAATATCATGGCGTTGGAGATCTCGGATAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTAAATGATGAGAAAATTGAGTTGCCTCCGGATTATGTTGAACCATCTTTTGACGTGCCTTCCGAAAAGGCAGTGAAAGAAAAGAAACACAAGAAAAAGAGCAAAAAAGAGAAGGTGAAGGCTTCCGATGAAATTGTAGAGAAGCAAGCCGAGGAGAAACTAGAAGAGAAGAAAGAGGAGGACAACATTGCACCAAATAAGGCTGAGGACGATCATCTCAAAGAGAAAAAGCGTAATAAATCGAAAAAGAAGGCAGCCAAGGAAAAAATTGATAAGCAGAAAGAGGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGCGTAGATGTACCTAAGAAAACAGCAAAACTTGTTTTTGGTGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTTTTTCAACTAAGAGAAATTATTTGTGACAGGTTCCCAAGCCTTGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGACTTGATCACAATCACTTCGGATGAAGAATTGAAGTGGGCTGAAACAGGATCACAGGGTTCTATCCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCATTCTATGAGAAACTTCGTCTGAATGATGTGGAAAAGGTTGAAATGGATAATGCCCCTAAGAACGGTTGTGTGGTGAAATCAAAGGAAATTGTTAGCTCATCTTGTGTTGAGGATTGGATAATTCAGTTCGCAGAACTGTTCAAAAATCACGTTGGGTTTGAATCCGACAGATACTTAGACTTTCATGAACTTGGGATGAAACTCTATTCAGAGGCTGTGGAAGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGGTAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTGTATTTAACTGAAGAAGATTCTTCTAGAGAGCATATGTATGAACAAATTAAAAGTTCGTATGAATGGGCGCAGAAAGAATATGCAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTACGAAGGCTTTCTTGCTCTTGGTCAGCAACGATTCGAACAAGCGAAACTTTCTTGGTATTATGCACTCAGTAGTAATATAGATTTACCGACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAATGCTGAGGAGAATATGGAAAAAGGAATGCTGATATGGGAAGAATCGCAAGAGCAGCAGCTCAGTGAAGCCTCCACTACCGGGCTGGATGGCTTATTTAAAAATATGTCATCAGATGAAACTGCAGCGCTGGCGGCAAACATGAGGTCACAGATAAATCTCTTGTGGGGTACTATGCTGTATGAACGCTCACTTGTGGAATTCAAATTAGGGCTACCCGTATGGCATGAATCATTGGAAGCTGCGATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATGTAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGCCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTTCATCCTTTCGTTTGGAACCCTTGTTCAGAAGAAGAGTATCGAAGATTTACCATGCCTTTGAGCTTGTATGA
Protein sequence

>Msa0287310

MGKKKKQVGETSEENGNHSNDGDKSPTAYDNDTLLFIATAQELKEEGNKMFQKRDLRGAMVRYEKALKLLPGNHIDVSYVRSNMAACYMQMGLGEYPRAINECNLALEVTPKYGKALLKRARCYEALNRLDLALRDVSAVLKMEPNNIMALEISDKVKSALEDRGLRVNDEKIELPPDYVEPSFDVPSEKAVKEKKHKKKSKKEKVKASDEIVEKQAEEKLEEKKEEDNIAPNKAEDDHLKEKKRNKSKKKAAKEKIDKQKEDVKEVNEEKSNGRSVDVPKKTAKLVFGDDIRWAQLPVNCSLFQLREIICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLRLNDVEKVEMDNAPKNGCVVKSKEIVSSSCVEDWIIQFAELFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEEDSSREHMYEQIKSSYEWAQKEYAKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYALSSNIDLPTWPSTEVLHLYNNAEENMEKGMLIWEESQEQQLSEASTTGLDGLFKNMSSDETAALAANMRSQINLLWGTMLYERSLVEFKLGLPVWHESLEAAIEKFEHAGASPTDVAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVSSFRLEPLFRRRVSKIYHAFELV*