Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985560 | KCW85420.1 | 67.797 | 59 | 17 | 2 | 1 | 58 | 91 | 148 | 2.35e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985560 | sp|Q9LMK7|RBP1A_ARATH | 70.213 | 47 | 13 | 1 | 1 | 47 | 89 | 134 | 3.95e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985560 | A0A059D5F4 | 67.797 | 59 | 17 | 2 | 1 | 58 | 91 | 148 | 1.12e-14 | 76.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0985560 | 0.813615 | 2.339771e-51 | -8.615850e-47 |
| Msa0047110 | Msa0985560 | 0.804032 | 2.624371e-49 | -8.615850e-47 |
| Msa0636510 | Msa0985560 | 0.848999 | 4.284863e-60 | -8.615850e-47 |
| Msa0705970 | Msa0985560 | 0.881806 | 1.766499e-70 | -8.615850e-47 |
| Msa0755180 | Msa0985560 | 0.802039 | 6.778856e-49 | -8.615850e-47 |
| Msa0766630 | Msa0985560 | 0.805300 | 1.427006e-49 | -8.615850e-47 |
| Msa0768290 | Msa0985560 | 0.807460 | 5.000353e-50 | -8.615850e-47 |
| Msa0768370 | Msa0985560 | 0.804070 | 2.577464e-49 | -8.615850e-47 |
| Msa0188460 | Msa0985560 | 0.803487 | 3.405314e-49 | -8.615850e-47 |
| Msa0384890 | Msa0985560 | 0.805250 | 1.461419e-49 | -8.615850e-47 |
| Msa0425790 | Msa0985560 | 0.800660 | 1.298670e-48 | -8.615850e-47 |
| Msa0435230 | Msa0985560 | 0.801802 | 7.580919e-49 | -8.615850e-47 |
| Msa0479340 | Msa0985560 | 0.835970 | 1.230387e-56 | -8.615850e-47 |
| Msa0985560 | Msa1090240 | 0.896317 | 4.142531e-76 | -8.615850e-47 |
| Msa0985560 | Msa1113170 | 0.811853 | 5.688419e-51 | -8.615850e-47 |
| Msa0985560 | Msa1114030 | 0.809964 | 1.458556e-50 | -8.615850e-47 |
| Msa0985560 | Msa1120610 | 0.802157 | 6.410486e-49 | -8.615850e-47 |
| Msa0985560 | Msa1121490 | 0.806930 | 6.474588e-50 | -8.615850e-47 |
| Msa0985560 | Msa1244250 | 0.805196 | 1.499902e-49 | -8.615850e-47 |
| Msa0985560 | Msa1284680 | 0.825961 | 3.523065e-54 | -8.615850e-47 |
| Msa0985560 | Msa1288560 | 0.800773 | 1.231548e-48 | -8.615850e-47 |
| Msa0985560 | Msa1410680 | 0.824951 | 6.110943e-54 | -8.615850e-47 |
| Msa0251320 | Msa0985560 | 0.807804 | 4.226739e-50 | -8.615850e-47 |
| Msa0554050 | Msa0985560 | 0.801182 | 1.015924e-48 | -8.615850e-47 |
| Msa0844490 | Msa0985560 | 0.802649 | 5.075196e-49 | -8.615850e-47 |
| Msa0877250 | Msa0985560 | 0.800108 | 1.682346e-48 | -8.615850e-47 |
| Msa0885890 | Msa0985560 | 0.859534 | 3.870212e-63 | -8.615850e-47 |
| Msa0897330 | Msa0985560 | 0.822617 | 2.152469e-53 | -8.615850e-47 |
| Msa0899430 | Msa0985560 | 0.801603 | 8.327722e-49 | -8.615850e-47 |
| Msa0899450 | Msa0985560 | 0.801042 | 1.084943e-48 | -8.615850e-47 |
| Msa0910660 | Msa0985560 | 0.897495 | 1.330953e-76 | -8.615850e-47 |
| Msa0914760 | Msa0985560 | 0.801307 | 9.577026e-49 | -8.615850e-47 |
| Msa0925250 | Msa0985560 | 0.803205 | 3.896165e-49 | -8.615850e-47 |
| Msa0925290 | Msa0985560 | 0.824878 | 6.356865e-54 | -8.615850e-47 |
| Msa0956270 | Msa0985560 | 0.805544 | 1.268242e-49 | -8.615850e-47 |
| Msa0958550 | Msa0985560 | 0.801293 | 9.642662e-49 | -8.615850e-47 |
| Msa0963070 | Msa0985560 | 0.809244 | 2.082748e-50 | -8.615850e-47 |
| Msa0966750 | Msa0985560 | 0.804546 | 2.051325e-49 | -8.615850e-47 |
| Msa0974080 | Msa0985560 | 0.838496 | 2.777749e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985560 | MtrunA17_Chr1g0201251 | 76.596 | 47 | 10 | 1 | 1 | 47 | 86 | 131 | 2.29e-17 | 75.1 |
| Msa0985560 | MtrunA17_Chr6g0466891 | 70.213 | 47 | 13 | 1 | 1 | 47 | 86 | 131 | 4.84e-16 | 71.6 |
| Msa0985560 | MtrunA17_Chr3g0090241 | 72.340 | 47 | 12 | 1 | 1 | 47 | 86 | 131 | 1.62e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985560 | AT1G07140.1 | 70.213 | 47 | 13 | 1 | 1 | 47 | 89 | 134 | 4.02e-14 | 67.0 |
| Msa0985560 | AT2G30060.1 | 65.957 | 47 | 15 | 1 | 1 | 47 | 91 | 136 | 5.85e-13 | 63.5 |
| Msa0985560 | AT5G58590.1 | 65.957 | 47 | 15 | 1 | 1 | 47 | 88 | 133 | 3.12e-12 | 61.6 |
Find 39 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACCGAGCCGTACTAAAT+TGG | 0.252478 | 6_4:-32205192 | None:intergenic |
| GCTGCTTCAACTGTGTTTGC+AGG | 0.266451 | 6_4:+32206078 | Msa0985560:CDS |
| CCGAGAGAGTAGGGTGTATT+TGG | 0.267050 | 6_4:+32205812 | Msa0985560:CDS |
| AGCGCAGATCTTGAGGGTTT+TGG | 0.290367 | 6_4:-32205318 | None:intergenic |
| CAGTTCTGTTCGAGGAAGTT+GGG | 0.316931 | 6_4:+32205987 | Msa0985560:CDS |
| GTATATGTTGGTGTGCTTCC+TGG | 0.324348 | 6_4:+32206102 | Msa0985560:CDS |
| ATAAGGTTACTTGAAAAGTT+AGG | 0.336456 | 6_4:+32205279 | Msa0985560:five_prime_UTR |
| GATTCGGTTGCTAGCAGTTT+GGG | 0.375277 | 6_4:+32206056 | Msa0985560:CDS |
| TGATTCGGTTGCTAGCAGTT+TGG | 0.405660 | 6_4:+32206055 | Msa0985560:CDS |
| CGATGGAGTTCTTAAGCATA+AGG | 0.412330 | 6_4:+32205262 | Msa0985560:five_prime_UTR |
| GCAGTTCTGTTCGAGGAAGT+TGG | 0.425432 | 6_4:+32205986 | Msa0985560:CDS |
| GAATTGAGAAATCGTGTGTT+TGG | 0.437554 | 6_4:+32205484 | Msa0985560:CDS |
| CTATCTTGTTAAAGTGGTGT+TGG | 0.446382 | 6_4:+32205786 | Msa0985560:CDS |
| GAAAAGTTAGGCTTCTTATG+AGG | 0.446917 | 6_4:+32205291 | Msa0985560:exon |
| TAACTTTATGAGTTCTTGAC+TGG | 0.460076 | 6_4:+32205237 | Msa0985560:five_prime_UTR |
| AATCGTGTGTTTGGCATGCT+AGG | 0.466273 | 6_4:+32205493 | Msa0985560:CDS |
| CTGCTTCAACTGTGTTTGCA+GGG | 0.486018 | 6_4:+32206079 | Msa0985560:CDS |
| CGAGGAAGTTGGGGTCTAGT+TGG | 0.486820 | 6_4:+32205997 | Msa0985560:CDS |
| ACGATTAGCGCAGATCTTGA+GGG | 0.489998 | 6_4:-32205324 | None:intergenic |
| TTCTCTTGCATACTCATCAT+AGG | 0.492591 | 6_4:-32205456 | None:intergenic |
| GACGATTAGCGCAGATCTTG+AGG | 0.502484 | 6_4:-32205325 | None:intergenic |
| TCTGCCATGAGATGGTGATT+CGG | 0.523598 | 6_4:+32206040 | Msa0985560:CDS |
| CATGCTAGGGATTCTGCTGA+TGG | 0.533927 | 6_4:+32205507 | Msa0985560:CDS |
| TGATAACTATCTTGTTAAAG+TGG | 0.534578 | 6_4:+32205780 | Msa0985560:CDS |
| ATCGTGTGTTTGGCATGCTA+GGG | 0.537370 | 6_4:+32205494 | Msa0985560:CDS |
| TGTTGGAATCCGAGAGAGTA+GGG | 0.545544 | 6_4:+32205803 | Msa0985560:CDS |
| CCAAATACACCCTACTCTCT+CGG | 0.552355 | 6_4:-32205812 | None:intergenic |
| ATGAGTATGCAAGAGAATGT+TGG | 0.553283 | 6_4:+32205462 | Msa0985560:CDS |
| TGAGTTCTTGACTGGTACGA+TGG | 0.554894 | 6_4:+32205245 | Msa0985560:five_prime_UTR |
| TGCTTCAACTGTGTTTGCAG+GGG | 0.555834 | 6_4:+32206080 | Msa0985560:CDS |
| AGTTCTGTTCGAGGAAGTTG+GGG | 0.577830 | 6_4:+32205988 | Msa0985560:CDS |
| GTGTTGGAATCCGAGAGAGT+AGG | 0.584549 | 6_4:+32205802 | Msa0985560:CDS |
| AGCAAAGATATTAGCTGCGG+AGG | 0.590198 | 6_4:+32205167 | None:intergenic |
| GCGGAGGATCCAATTTAGTA+CGG | 0.590877 | 6_4:+32205183 | Msa0985560:five_prime_UTR |
| GGATCCAATTTAGTACGGCT+CGG | 0.591535 | 6_4:+32205188 | Msa0985560:five_prime_UTR |
| GTGTTTGCAGGGGTATATGT+TGG | 0.608820 | 6_4:+32206090 | Msa0985560:CDS |
| ACTGCAGCAGAAATCAAACC+AGG | 0.630618 | 6_4:-32206120 | None:intergenic |
| AGCAGCAAAGATATTAGCTG+CGG | 0.638123 | 6_4:+32205164 | None:intergenic |
| GCAACCGAATCACCATCTCA+TGG | 0.649274 | 6_4:-32206044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTAGATGATGTTTTATTT+TGG | + | chr6_4:32205654-32205673 | Msa0985560:intron | 20.0% |
| !!! | GTTAGATGATGTTTTATTTT+GGG | + | chr6_4:32205655-32205674 | Msa0985560:intron | 20.0% |
| !!! | TTAGATGATGTTTTATTTTG+GGG | + | chr6_4:32205656-32205675 | Msa0985560:intron | 20.0% |
| !! | AGAAACAATAACAAAAATGA+AGG | - | chr6_4:32206178-32206197 | None:intergenic | 20.0% |
| !!! | CATTTTTGTTATTGTTTCTT+AGG | + | chr6_4:32206179-32206198 | Msa0985560:CDS | 20.0% |
| !!! | TGTTAGATGATGTTTTATTT+TGG | + | chr6_4:32205654-32205673 | Msa0985560:intron | 20.0% |
| !!! | GTTAGATGATGTTTTATTTT+GGG | + | chr6_4:32205655-32205674 | Msa0985560:intron | 20.0% |
| !!! | TTAGATGATGTTTTATTTTG+GGG | + | chr6_4:32205656-32205675 | Msa0985560:intron | 20.0% |
| !! | AGAAACAATAACAAAAATGA+AGG | - | chr6_4:32206178-32206197 | None:intergenic | 20.0% |
| ! | ATAAGGTTACTTGAAAAGTT+AGG | + | chr6_4:32205279-32205298 | Msa0985560:five_prime_UTR | 25.0% |
| !!! | TTTTGTGATTTTGATTGTTG+TGG | + | chr6_4:32205410-32205429 | Msa0985560:intron | 25.0% |
| !!! | CAGATTTTTTGTAGTTAGAT+TGG | + | chr6_4:32205608-32205627 | Msa0985560:intron | 25.0% |
| !! | ATTGGTTTAGATGAATATTG+TGG | + | chr6_4:32205626-32205645 | Msa0985560:intron | 25.0% |
| ! | TTGGTTTAGATGAATATTGT+GGG | + | chr6_4:32205627-32205646 | Msa0985560:intron | 25.0% |
| !!! | TAGATGATGTTTTATTTTGG+GGG | + | chr6_4:32205657-32205676 | Msa0985560:intron | 25.0% |
| ! | TGATAACTATCTTGTTAAAG+TGG | + | chr6_4:32205780-32205799 | Msa0985560:CDS | 25.0% |
| ! | AAATGAGTAAAATTACAGAC+CGG | - | chr6_4:32205873-32205892 | None:intergenic | 25.0% |
| ! | GTTTACTTATCCAAAAAGAT+AGG | + | chr6_4:32205905-32205924 | Msa0985560:intron | 25.0% |
| !! | AGGAAAAATTCCTATCTTTT+TGG | - | chr6_4:32205918-32205937 | None:intergenic | 25.0% |
| ! | ATAAGGTTACTTGAAAAGTT+AGG | + | chr6_4:32205279-32205298 | Msa0985560:five_prime_UTR | 25.0% |
| !!! | TTTTGTGATTTTGATTGTTG+TGG | + | chr6_4:32205410-32205429 | Msa0985560:intron | 25.0% |
| !!! | CAGATTTTTTGTAGTTAGAT+TGG | + | chr6_4:32205608-32205627 | Msa0985560:intron | 25.0% |
| !! | ATTGGTTTAGATGAATATTG+TGG | + | chr6_4:32205626-32205645 | Msa0985560:intron | 25.0% |
| ! | TTGGTTTAGATGAATATTGT+GGG | + | chr6_4:32205627-32205646 | Msa0985560:intron | 25.0% |
| !!! | TAGATGATGTTTTATTTTGG+GGG | + | chr6_4:32205657-32205676 | Msa0985560:intron | 25.0% |
| ! | TGATAACTATCTTGTTAAAG+TGG | + | chr6_4:32205780-32205799 | Msa0985560:CDS | 25.0% |
| ! | AAATGAGTAAAATTACAGAC+CGG | - | chr6_4:32205873-32205892 | None:intergenic | 25.0% |
| ! | GTTTACTTATCCAAAAAGAT+AGG | + | chr6_4:32205905-32205924 | Msa0985560:intron | 25.0% |
| !! | AGGAAAAATTCCTATCTTTT+TGG | - | chr6_4:32205918-32205937 | None:intergenic | 25.0% |
| TAACTTTATGAGTTCTTGAC+TGG | + | chr6_4:32205237-32205256 | Msa0985560:five_prime_UTR | 30.0% | |
| ! | AAGATGCACTTTTCTGTTTT+CGG | + | chr6_4:32205539-32205558 | Msa0985560:intron | 30.0% |
| ! | AAGATAGGAATTTTTCCTTG+TGG | + | chr6_4:32205920-32205939 | Msa0985560:intron | 30.0% |
| AAAGGAAAATATGTACCACA+AGG | - | chr6_4:32205938-32205957 | None:intergenic | 30.0% | |
| ! | TTGTGGTACATATTTTCCTT+TGG | + | chr6_4:32205937-32205956 | Msa0985560:intron | 30.0% |
| !!! | TGCAGTCCATGTATTTTTTA+AGG | + | chr6_4:32206137-32206156 | Msa0985560:CDS | 30.0% |
| GCATGACCTTAAAAAATACA+TGG | - | chr6_4:32206146-32206165 | None:intergenic | 30.0% | |
| TAACTTTATGAGTTCTTGAC+TGG | + | chr6_4:32205237-32205256 | Msa0985560:five_prime_UTR | 30.0% | |
| ! | AAGATGCACTTTTCTGTTTT+CGG | + | chr6_4:32205539-32205558 | Msa0985560:intron | 30.0% |
| ! | AAGATAGGAATTTTTCCTTG+TGG | + | chr6_4:32205920-32205939 | Msa0985560:intron | 30.0% |
| AAAGGAAAATATGTACCACA+AGG | - | chr6_4:32205938-32205957 | None:intergenic | 30.0% | |
| ! | TTGTGGTACATATTTTCCTT+TGG | + | chr6_4:32205937-32205956 | Msa0985560:intron | 30.0% |
| !!! | TGCAGTCCATGTATTTTTTA+AGG | + | chr6_4:32206137-32206156 | Msa0985560:CDS | 30.0% |
| GCATGACCTTAAAAAATACA+TGG | - | chr6_4:32206146-32206165 | None:intergenic | 30.0% | |
| GAAAAGTTAGGCTTCTTATG+AGG | + | chr6_4:32205291-32205310 | Msa0985560:exon | 35.0% | |
| TTCTCTTGCATACTCATCAT+AGG | - | chr6_4:32205459-32205478 | None:intergenic | 35.0% | |
| ATGAGTATGCAAGAGAATGT+TGG | + | chr6_4:32205462-32205481 | Msa0985560:CDS | 35.0% | |
| GAATTGAGAAATCGTGTGTT+TGG | + | chr6_4:32205484-32205503 | Msa0985560:CDS | 35.0% | |
| ACTCAACAACTATTGACATG+TGG | + | chr6_4:32205725-32205744 | Msa0985560:intron | 35.0% | |
| CTATCTTGTTAAAGTGGTGT+TGG | + | chr6_4:32205786-32205805 | Msa0985560:CDS | 35.0% | |
| ! | TTTCCTTTGGTAATTGTAGC+AGG | + | chr6_4:32205950-32205969 | Msa0985560:intron | 35.0% |
| ! | TTCCTTTGGTAATTGTAGCA+GGG | + | chr6_4:32205951-32205970 | Msa0985560:intron | 35.0% |
| GAAAAGTTAGGCTTCTTATG+AGG | + | chr6_4:32205291-32205310 | Msa0985560:exon | 35.0% | |
| TTCTCTTGCATACTCATCAT+AGG | - | chr6_4:32205459-32205478 | None:intergenic | 35.0% | |
| ATGAGTATGCAAGAGAATGT+TGG | + | chr6_4:32205462-32205481 | Msa0985560:CDS | 35.0% | |
| GAATTGAGAAATCGTGTGTT+TGG | + | chr6_4:32205484-32205503 | Msa0985560:CDS | 35.0% | |
| ACTCAACAACTATTGACATG+TGG | + | chr6_4:32205725-32205744 | Msa0985560:intron | 35.0% | |
| CTATCTTGTTAAAGTGGTGT+TGG | + | chr6_4:32205786-32205805 | Msa0985560:CDS | 35.0% | |
| ! | TTTCCTTTGGTAATTGTAGC+AGG | + | chr6_4:32205950-32205969 | Msa0985560:intron | 35.0% |
| ! | TTCCTTTGGTAATTGTAGCA+GGG | + | chr6_4:32205951-32205970 | Msa0985560:intron | 35.0% |
| CGATGGAGTTCTTAAGCATA+AGG | + | chr6_4:32205262-32205281 | Msa0985560:five_prime_UTR | 40.0% | |
| AAATTACAGACCGGACAAGA+TGG | - | chr6_4:32205864-32205883 | None:intergenic | 40.0% | |
| !!! | CAGTTTTTTCTGCCATGAGA+TGG | + | chr6_4:32206032-32206051 | Msa0985560:CDS | 40.0% |
| CGATGGAGTTCTTAAGCATA+AGG | + | chr6_4:32205262-32205281 | Msa0985560:five_prime_UTR | 40.0% | |
| AAATTACAGACCGGACAAGA+TGG | - | chr6_4:32205864-32205883 | None:intergenic | 40.0% | |
| !!! | CAGTTTTTTCTGCCATGAGA+TGG | + | chr6_4:32206032-32206051 | Msa0985560:CDS | 40.0% |
| GCGGAGGATCCAATTTAGTA+CGG | + | chr6_4:32205183-32205202 | Msa0985560:five_prime_UTR | 45.0% | |
| GGATCCAATTTAGTACGGCT+CGG | + | chr6_4:32205188-32205207 | Msa0985560:five_prime_UTR | 45.0% | |
| ACAACCGAGCCGTACTAAAT+TGG | - | chr6_4:32205195-32205214 | None:intergenic | 45.0% | |
| TGAGTTCTTGACTGGTACGA+TGG | + | chr6_4:32205245-32205264 | Msa0985560:five_prime_UTR | 45.0% | |
| ACGATTAGCGCAGATCTTGA+GGG | - | chr6_4:32205327-32205346 | None:intergenic | 45.0% | |
| AATCGTGTGTTTGGCATGCT+AGG | + | chr6_4:32205493-32205512 | Msa0985560:CDS | 45.0% | |
| ATCGTGTGTTTGGCATGCTA+GGG | + | chr6_4:32205494-32205513 | Msa0985560:CDS | 45.0% | |
| TGTTGGAATCCGAGAGAGTA+GGG | + | chr6_4:32205803-32205822 | Msa0985560:CDS | 45.0% | |
| CCAAATACACCCTACTCTCT+CGG | - | chr6_4:32205815-32205834 | None:intergenic | 45.0% | |
| CACCCTGCTACAATTACCAA+AGG | - | chr6_4:32205956-32205975 | None:intergenic | 45.0% | |
| ! | GTCTTTTGCAGTTCTGTTCG+AGG | + | chr6_4:32205979-32205998 | Msa0985560:CDS | 45.0% |
| CAGTTCTGTTCGAGGAAGTT+GGG | + | chr6_4:32205987-32206006 | Msa0985560:CDS | 45.0% | |
| AGTTCTGTTCGAGGAAGTTG+GGG | + | chr6_4:32205988-32206007 | Msa0985560:CDS | 45.0% | |
| TCTGCCATGAGATGGTGATT+CGG | + | chr6_4:32206040-32206059 | Msa0985560:CDS | 45.0% | |
| !! | TGATTCGGTTGCTAGCAGTT+TGG | + | chr6_4:32206055-32206074 | Msa0985560:CDS | 45.0% |
| ! | GATTCGGTTGCTAGCAGTTT+GGG | + | chr6_4:32206056-32206075 | Msa0985560:CDS | 45.0% |
| CTGCTTCAACTGTGTTTGCA+GGG | + | chr6_4:32206079-32206098 | Msa0985560:CDS | 45.0% | |
| TGCTTCAACTGTGTTTGCAG+GGG | + | chr6_4:32206080-32206099 | Msa0985560:CDS | 45.0% | |
| ! | GTGTTTGCAGGGGTATATGT+TGG | + | chr6_4:32206090-32206109 | Msa0985560:CDS | 45.0% |
| GTATATGTTGGTGTGCTTCC+TGG | + | chr6_4:32206102-32206121 | Msa0985560:CDS | 45.0% | |
| ACTGCAGCAGAAATCAAACC+AGG | - | chr6_4:32206123-32206142 | None:intergenic | 45.0% | |
| GCGGAGGATCCAATTTAGTA+CGG | + | chr6_4:32205183-32205202 | Msa0985560:five_prime_UTR | 45.0% | |
| GGATCCAATTTAGTACGGCT+CGG | + | chr6_4:32205188-32205207 | Msa0985560:five_prime_UTR | 45.0% | |
| ACAACCGAGCCGTACTAAAT+TGG | - | chr6_4:32205195-32205214 | None:intergenic | 45.0% | |
| TGAGTTCTTGACTGGTACGA+TGG | + | chr6_4:32205245-32205264 | Msa0985560:five_prime_UTR | 45.0% | |
| ACGATTAGCGCAGATCTTGA+GGG | - | chr6_4:32205327-32205346 | None:intergenic | 45.0% | |
| AATCGTGTGTTTGGCATGCT+AGG | + | chr6_4:32205493-32205512 | Msa0985560:CDS | 45.0% | |
| ATCGTGTGTTTGGCATGCTA+GGG | + | chr6_4:32205494-32205513 | Msa0985560:CDS | 45.0% | |
| TGTTGGAATCCGAGAGAGTA+GGG | + | chr6_4:32205803-32205822 | Msa0985560:CDS | 45.0% | |
| CCAAATACACCCTACTCTCT+CGG | - | chr6_4:32205815-32205834 | None:intergenic | 45.0% | |
| CACCCTGCTACAATTACCAA+AGG | - | chr6_4:32205956-32205975 | None:intergenic | 45.0% | |
| ! | GTCTTTTGCAGTTCTGTTCG+AGG | + | chr6_4:32205979-32205998 | Msa0985560:CDS | 45.0% |
| CAGTTCTGTTCGAGGAAGTT+GGG | + | chr6_4:32205987-32206006 | Msa0985560:CDS | 45.0% | |
| AGTTCTGTTCGAGGAAGTTG+GGG | + | chr6_4:32205988-32206007 | Msa0985560:CDS | 45.0% | |
| TCTGCCATGAGATGGTGATT+CGG | + | chr6_4:32206040-32206059 | Msa0985560:CDS | 45.0% | |
| !! | TGATTCGGTTGCTAGCAGTT+TGG | + | chr6_4:32206055-32206074 | Msa0985560:CDS | 45.0% |
| ! | GATTCGGTTGCTAGCAGTTT+GGG | + | chr6_4:32206056-32206075 | Msa0985560:CDS | 45.0% |
| CTGCTTCAACTGTGTTTGCA+GGG | + | chr6_4:32206079-32206098 | Msa0985560:CDS | 45.0% | |
| TGCTTCAACTGTGTTTGCAG+GGG | + | chr6_4:32206080-32206099 | Msa0985560:CDS | 45.0% | |
| ! | GTGTTTGCAGGGGTATATGT+TGG | + | chr6_4:32206090-32206109 | Msa0985560:CDS | 45.0% |
| GTATATGTTGGTGTGCTTCC+TGG | + | chr6_4:32206102-32206121 | Msa0985560:CDS | 45.0% | |
| ACTGCAGCAGAAATCAAACC+AGG | - | chr6_4:32206123-32206142 | None:intergenic | 45.0% | |
| ! | AGCGCAGATCTTGAGGGTTT+TGG | - | chr6_4:32205321-32205340 | None:intergenic | 50.0% |
| GACGATTAGCGCAGATCTTG+AGG | - | chr6_4:32205328-32205347 | None:intergenic | 50.0% | |
| CATGCTAGGGATTCTGCTGA+TGG | + | chr6_4:32205507-32205526 | Msa0985560:CDS | 50.0% | |
| GTGTTGGAATCCGAGAGAGT+AGG | + | chr6_4:32205802-32205821 | Msa0985560:CDS | 50.0% | |
| CCGAGAGAGTAGGGTGTATT+TGG | + | chr6_4:32205812-32205831 | Msa0985560:CDS | 50.0% | |
| GTTGCACATGCCATCTTGTC+CGG | + | chr6_4:32205851-32205870 | Msa0985560:intron | 50.0% | |
| GCAGTTCTGTTCGAGGAAGT+TGG | + | chr6_4:32205986-32206005 | Msa0985560:CDS | 50.0% | |
| GCAACCGAATCACCATCTCA+TGG | - | chr6_4:32206047-32206066 | None:intergenic | 50.0% | |
| GCTGCTTCAACTGTGTTTGC+AGG | + | chr6_4:32206078-32206097 | Msa0985560:CDS | 50.0% | |
| ! | AGCGCAGATCTTGAGGGTTT+TGG | - | chr6_4:32205321-32205340 | None:intergenic | 50.0% |
| GACGATTAGCGCAGATCTTG+AGG | - | chr6_4:32205328-32205347 | None:intergenic | 50.0% | |
| CATGCTAGGGATTCTGCTGA+TGG | + | chr6_4:32205507-32205526 | Msa0985560:CDS | 50.0% | |
| GTGTTGGAATCCGAGAGAGT+AGG | + | chr6_4:32205802-32205821 | Msa0985560:CDS | 50.0% | |
| CCGAGAGAGTAGGGTGTATT+TGG | + | chr6_4:32205812-32205831 | Msa0985560:CDS | 50.0% | |
| GTTGCACATGCCATCTTGTC+CGG | + | chr6_4:32205851-32205870 | Msa0985560:intron | 50.0% | |
| GCAGTTCTGTTCGAGGAAGT+TGG | + | chr6_4:32205986-32206005 | Msa0985560:CDS | 50.0% | |
| GCAACCGAATCACCATCTCA+TGG | - | chr6_4:32206047-32206066 | None:intergenic | 50.0% | |
| GCTGCTTCAACTGTGTTTGC+AGG | + | chr6_4:32206078-32206097 | Msa0985560:CDS | 50.0% | |
| CGAGGAAGTTGGGGTCTAGT+TGG | + | chr6_4:32205997-32206016 | Msa0985560:CDS | 55.0% | |
| CGAGGAAGTTGGGGTCTAGT+TGG | + | chr6_4:32205997-32206016 | Msa0985560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 32205173 | 32206200 | 32205173 | ID=Msa0985560;Name=Msa0985560 |
| chr6_4 | mRNA | 32205173 | 32206200 | 32205173 | ID=Msa0985560-mRNA-1;Parent=Msa0985560;Name=Msa0985560-mRNA-1;_AED=0.42;_eAED=0.42;_QI=135|0.33|0.25|0.75|1|1|4|0|139 |
| chr6_4 | exon | 32205173 | 32205350 | 32205173 | ID=Msa0985560-mRNA-1:exon:8580;Parent=Msa0985560-mRNA-1 |
| chr6_4 | exon | 32205451 | 32205528 | 32205451 | ID=Msa0985560-mRNA-1:exon:8581;Parent=Msa0985560-mRNA-1 |
| chr6_4 | exon | 32205764 | 32205833 | 32205764 | ID=Msa0985560-mRNA-1:exon:8582;Parent=Msa0985560-mRNA-1 |
| chr6_4 | exon | 32205972 | 32206200 | 32205972 | ID=Msa0985560-mRNA-1:exon:8583;Parent=Msa0985560-mRNA-1 |
| chr6_4 | five_prime_UTR | 32205173 | 32205307 | 32205173 | ID=Msa0985560-mRNA-1:five_prime_utr;Parent=Msa0985560-mRNA-1 |
| chr6_4 | CDS | 32205308 | 32205350 | 32205308 | ID=Msa0985560-mRNA-1:cds;Parent=Msa0985560-mRNA-1 |
| chr6_4 | CDS | 32205451 | 32205528 | 32205451 | ID=Msa0985560-mRNA-1:cds;Parent=Msa0985560-mRNA-1 |
| chr6_4 | CDS | 32205764 | 32205833 | 32205764 | ID=Msa0985560-mRNA-1:cds;Parent=Msa0985560-mRNA-1 |
| chr6_4 | CDS | 32205972 | 32206200 | 32205972 | ID=Msa0985560-mRNA-1:cds;Parent=Msa0985560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
