Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288560 | XP_013453285.2 | 40.994 | 161 | 83 | 4 | 4 | 160 | 9 | 161 | 4.80e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288560 | A0A396HPE2 | 40.994 | 161 | 83 | 4 | 4 | 160 | 9 | 161 | 2.29e-34 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021510 | Msa1288560 | 0.808325 | 3.273646e-50 | -8.615850e-47 |
| Msa0056530 | Msa1288560 | 0.802188 | 6.316967e-49 | -8.615850e-47 |
| Msa0604350 | Msa1288560 | 0.819757 | 9.821644e-53 | -8.615850e-47 |
| Msa0613440 | Msa1288560 | 0.810665 | 1.029647e-50 | -8.615850e-47 |
| Msa0632740 | Msa1288560 | 0.816867 | 4.431499e-52 | -8.615850e-47 |
| Msa0636170 | Msa1288560 | 0.802628 | 5.125406e-49 | -8.615850e-47 |
| Msa0639610 | Msa1288560 | 0.822602 | 2.170244e-53 | -8.615850e-47 |
| Msa0645300 | Msa1288560 | 0.804954 | 1.685281e-49 | -8.615850e-47 |
| Msa0694370 | Msa1288560 | 0.830564 | 2.735770e-55 | -8.615850e-47 |
| Msa0701010 | Msa1288560 | 0.836664 | 8.195882e-57 | -8.615850e-47 |
| Msa0729800 | Msa1288560 | 0.813459 | 2.532363e-51 | -8.615850e-47 |
| Msa0731940 | Msa1288560 | 0.852349 | 4.892904e-61 | -8.615850e-47 |
| Msa0733290 | Msa1288560 | 0.815134 | 1.080074e-51 | -8.615850e-47 |
| Msa0735170 | Msa1288560 | 0.801456 | 8.927755e-49 | -8.615850e-47 |
| Msa0743810 | Msa1288560 | 0.814530 | 1.469729e-51 | -8.615850e-47 |
| Msa0745060 | Msa1288560 | 0.807977 | 3.882313e-50 | -8.615850e-47 |
| Msa0748970 | Msa1288560 | 0.805845 | 1.096638e-49 | -8.615850e-47 |
| Msa0755180 | Msa1288560 | 0.801000 | 1.106974e-48 | -8.615850e-47 |
| Msa0768290 | Msa1288560 | 0.811244 | 7.715406e-51 | -8.615850e-47 |
| Msa0768370 | Msa1288560 | 0.820508 | 6.608651e-53 | -8.615850e-47 |
| Msa0784290 | Msa1288560 | 0.846321 | 2.337529e-59 | -8.615850e-47 |
| Msa0784300 | Msa1288560 | 0.827547 | 1.472827e-54 | -8.615850e-47 |
| Msa0808010 | Msa1288560 | 0.828573 | 8.341954e-55 | -8.615850e-47 |
| Msa0808020 | Msa1288560 | 0.821833 | 3.272737e-53 | -8.615850e-47 |
| Msa0810220 | Msa1288560 | 0.821384 | 4.154680e-53 | -8.615850e-47 |
| Msa0824590 | Msa1288560 | 0.806627 | 7.505192e-50 | -8.615850e-47 |
| Msa0825860 | Msa1288560 | 0.816426 | 5.563621e-52 | -8.615850e-47 |
| Msa0832340 | Msa1288560 | 0.811076 | 8.388289e-51 | -8.615850e-47 |
| Msa0127800 | Msa1288560 | 0.802544 | 5.334413e-49 | -8.615850e-47 |
| Msa0171540 | Msa1288560 | 0.801562 | 8.490469e-49 | -8.615850e-47 |
| Msa0179430 | Msa1288560 | 0.805429 | 1.340681e-49 | -8.615850e-47 |
| Msa0180500 | Msa1288560 | 0.815874 | 7.391342e-52 | -8.615850e-47 |
| Msa0198910 | Msa1288560 | 0.801005 | 1.104387e-48 | -8.615850e-47 |
| Msa0208090 | Msa1288560 | 0.838398 | 2.945403e-57 | -8.615850e-47 |
| Msa0227480 | Msa1288560 | 0.840046 | 1.100614e-57 | -8.615850e-47 |
| Msa1232740 | Msa1288560 | 0.810199 | 1.298129e-50 | -8.615850e-47 |
| Msa1248310 | Msa1288560 | 0.804124 | 2.511204e-49 | -8.615850e-47 |
| Msa1253000 | Msa1288560 | 0.816325 | 5.860072e-52 | -8.615850e-47 |
| Msa1253020 | Msa1288560 | 0.808160 | 3.550548e-50 | -8.615850e-47 |
| Msa1269670 | Msa1288560 | 0.801250 | 9.839797e-49 | -8.615850e-47 |
| Msa1276890 | Msa1288560 | 0.800874 | 1.174225e-48 | -8.615850e-47 |
| Msa1277660 | Msa1288560 | 0.835124 | 2.014472e-56 | -8.615850e-47 |
| Msa1283330 | Msa1288560 | 0.825294 | 5.068792e-54 | -8.615850e-47 |
| Msa1284680 | Msa1288560 | 0.832874 | 7.369279e-56 | -8.615850e-47 |
| Msa1285930 | Msa1288560 | 0.808043 | 3.760381e-50 | -8.615850e-47 |
| Msa1286800 | Msa1288560 | 0.834277 | 3.289151e-56 | -8.615850e-47 |
| Msa1287190 | Msa1288560 | 0.830731 | 2.490063e-55 | -8.615850e-47 |
| Msa1287800 | Msa1288560 | 0.810063 | 1.388764e-50 | -8.615850e-47 |
| Msa1287810 | Msa1288560 | 0.818690 | 1.718788e-52 | -8.615850e-47 |
| Msa1288560 | Msa1298510 | 0.800828 | 1.199898e-48 | -8.615850e-47 |
| Msa1288560 | Msa1313320 | 0.813463 | 2.527921e-51 | -8.615850e-47 |
| Msa1288560 | Msa1320300 | 0.808745 | 2.663073e-50 | -8.615850e-47 |
| Msa1288560 | Msa1340590 | 0.812185 | 4.813345e-51 | -8.615850e-47 |
| Msa1288560 | Msa1353470 | 0.807561 | 4.758735e-50 | -8.615850e-47 |
| Msa1288560 | Msa1373030 | 0.808852 | 2.525929e-50 | -8.615850e-47 |
| Msa1288560 | Msa1397580 | 0.815229 | 1.028823e-51 | -8.615850e-47 |
| Msa1288560 | Msa1397860 | 0.809229 | 2.098077e-50 | -8.615850e-47 |
| Msa1288560 | Msa1400720 | 0.801209 | 1.002908e-48 | -8.615850e-47 |
| Msa1288560 | Msa1410680 | 0.859466 | 4.057310e-63 | -8.615850e-47 |
| Msa1288560 | Msa1412530 | 0.807778 | 4.281008e-50 | -8.615850e-47 |
| Msa1288560 | Msa1420820 | 0.828522 | 8.580647e-55 | -8.615850e-47 |
| Msa1288560 | Msa1422180 | 0.816603 | 5.078288e-52 | -8.615850e-47 |
| Msa1288560 | Msa1433120 | 0.838573 | 2.654658e-57 | -8.615850e-47 |
| Msa1288560 | Msa1458750 | 0.803359 | 3.619759e-49 | -8.615850e-47 |
| Msa1288560 | Msa1466540 | 0.823567 | 1.292465e-53 | -8.615850e-47 |
| Msa0384890 | Msa1288560 | 0.806963 | 6.372256e-50 | -8.615850e-47 |
| Msa0385840 | Msa1288560 | 0.810054 | 1.394865e-50 | -8.615850e-47 |
| Msa0390070 | Msa1288560 | 0.811813 | 5.803000e-51 | -8.615850e-47 |
| Msa0402290 | Msa1288560 | 0.812051 | 5.149410e-51 | -8.615850e-47 |
| Msa0406120 | Msa1288560 | 0.805760 | 1.142628e-49 | -8.615850e-47 |
| Msa0414420 | Msa1288560 | 0.812474 | 4.164047e-51 | -8.615850e-47 |
| Msa0424320 | Msa1288560 | 0.820154 | 7.967374e-53 | -8.615850e-47 |
| Msa0435230 | Msa1288560 | 0.818613 | 1.788948e-52 | -8.615850e-47 |
| Msa0436780 | Msa1288560 | 0.807578 | 4.721251e-50 | -8.615850e-47 |
| Msa0450000 | Msa1288560 | 0.843795 | 1.124831e-58 | -8.615850e-47 |
| Msa0452900 | Msa1288560 | 0.827059 | 1.927949e-54 | -8.615850e-47 |
| Msa0479340 | Msa1288560 | 0.837597 | 4.733068e-57 | -8.615850e-47 |
| Msa0980200 | Msa1288560 | 0.801884 | 7.293867e-49 | -8.615850e-47 |
| Msa0981370 | Msa1288560 | 0.855241 | 7.198103e-62 | -8.615850e-47 |
| Msa0985560 | Msa1288560 | 0.800773 | 1.231548e-48 | -8.615850e-47 |
| Msa0991830 | Msa1288560 | 0.822117 | 2.812735e-53 | -8.615850e-47 |
| Msa0998690 | Msa1288560 | 0.816699 | 4.832654e-52 | -8.615850e-47 |
| Msa1002810 | Msa1288560 | 0.806209 | 9.193868e-50 | -8.615850e-47 |
| Msa1014540 | Msa1288560 | 0.822688 | 2.072474e-53 | -8.615850e-47 |
| Msa1016280 | Msa1288560 | 0.838303 | 3.116410e-57 | -8.615850e-47 |
| Msa1025360 | Msa1288560 | 0.832992 | 6.887620e-56 | -8.615850e-47 |
| Msa1025370 | Msa1288560 | 0.817939 | 2.542193e-52 | -8.615850e-47 |
| Msa1029240 | Msa1288560 | 0.806208 | 9.195495e-50 | -8.615850e-47 |
| Msa1035480 | Msa1288560 | 0.806335 | 8.646950e-50 | -8.615850e-47 |
| Msa1044830 | Msa1288560 | 0.824927 | 6.189605e-54 | -8.615850e-47 |
| Msa1044840 | Msa1288560 | 0.831734 | 1.411297e-55 | -8.615850e-47 |
| Msa1060840 | Msa1288560 | 0.824429 | 8.109676e-54 | -8.615850e-47 |
| Msa1075540 | Msa1288560 | 0.816116 | 6.527432e-52 | -8.615850e-47 |
| Msa1083840 | Msa1288560 | 0.805073 | 1.591581e-49 | -8.615850e-47 |
| Msa1100980 | Msa1288560 | 0.800515 | 1.390257e-48 | -8.615850e-47 |
| Msa0251320 | Msa1288560 | 0.813342 | 2.686880e-51 | -8.615850e-47 |
| Msa0251640 | Msa1288560 | 0.817753 | 2.799506e-52 | -8.615850e-47 |
| Msa0267000 | Msa1288560 | 0.816328 | 5.853352e-52 | -8.615850e-47 |
| Msa0267010 | Msa1288560 | 0.825891 | 3.661253e-54 | -8.615850e-47 |
| Msa0275000 | Msa1288560 | 0.824071 | 9.843856e-54 | -8.615850e-47 |
| Msa0295770 | Msa1288560 | 0.807594 | 4.683474e-50 | -8.615850e-47 |
| Msa0321310 | Msa1288560 | 0.811974 | 5.351877e-51 | -8.615850e-47 |
| Msa0337900 | Msa1288560 | 0.803044 | 4.205171e-49 | -8.615850e-47 |
| Msa0342240 | Msa1288560 | 0.813734 | 2.203351e-51 | -8.615850e-47 |
| Msa0342750 | Msa1288560 | 0.821400 | 4.119447e-53 | -8.615850e-47 |
| Msa0352540 | Msa1288560 | 0.805623 | 1.220881e-49 | -8.615850e-47 |
| Msa0355220 | Msa1288560 | 0.814645 | 1.386675e-51 | -8.615850e-47 |
| Msa1109440 | Msa1288560 | 0.823520 | 1.325511e-53 | -8.615850e-47 |
| Msa1112300 | Msa1288560 | 0.801013 | 1.099787e-48 | -8.615850e-47 |
| Msa1113170 | Msa1288560 | 0.825071 | 5.723321e-54 | -8.615850e-47 |
| Msa1114030 | Msa1288560 | 0.804148 | 2.482539e-49 | -8.615850e-47 |
| Msa1117150 | Msa1288560 | 0.817105 | 3.918377e-52 | -8.615850e-47 |
| Msa1120610 | Msa1288560 | 0.824549 | 7.601673e-54 | -8.615850e-47 |
| Msa1121200 | Msa1288560 | 0.828109 | 1.078913e-54 | -8.615850e-47 |
| Msa1121480 | Msa1288560 | 0.827902 | 1.210597e-54 | -8.615850e-47 |
| Msa1121490 | Msa1288560 | 0.835285 | 1.834044e-56 | -8.615850e-47 |
| Msa1135220 | Msa1288560 | 0.800723 | 1.260707e-48 | -8.615850e-47 |
| Msa1137570 | Msa1288560 | 0.829560 | 4.807090e-55 | -8.615850e-47 |
| Msa1144450 | Msa1288560 | 0.804462 | 2.135906e-49 | -8.615850e-47 |
| Msa1149360 | Msa1288560 | 0.824642 | 7.225601e-54 | -8.615850e-47 |
| Msa1150370 | Msa1288560 | 0.814795 | 1.284190e-51 | -8.615850e-47 |
| Msa1162780 | Msa1288560 | 0.816997 | 4.143805e-52 | -8.615850e-47 |
| Msa1192640 | Msa1288560 | 0.802127 | 6.501440e-49 | -8.615850e-47 |
| Msa1210020 | Msa1288560 | 0.804528 | 2.068794e-49 | -8.615850e-47 |
| Msa0491590 | Msa1288560 | 0.809288 | 2.038083e-50 | -8.615850e-47 |
| Msa0512750 | Msa1288560 | 0.801959 | 7.040902e-49 | -8.615850e-47 |
| Msa0523940 | Msa1288560 | 0.827866 | 1.234972e-54 | -8.615850e-47 |
| Msa0532990 | Msa1288560 | 0.807160 | 5.788715e-50 | -8.615850e-47 |
| Msa0534540 | Msa1288560 | 0.809425 | 1.904464e-50 | -8.615850e-47 |
| Msa0545700 | Msa1288560 | 0.812639 | 3.832056e-51 | -8.615850e-47 |
| Msa0548920 | Msa1288560 | 0.830440 | 2.933233e-55 | -8.615850e-47 |
| Msa0564890 | Msa1288560 | 0.810097 | 1.365258e-50 | -8.615850e-47 |
| Msa0585230 | Msa1288560 | 0.800211 | 1.602727e-48 | -8.615850e-47 |
| Msa0596150 | Msa1288560 | 0.824056 | 9.926657e-54 | -8.615850e-47 |
| Msa0598780 | Msa1288560 | 0.808154 | 3.560308e-50 | -8.615850e-47 |
| Msa0844490 | Msa1288560 | 0.851524 | 8.389765e-61 | -8.615850e-47 |
| Msa0846330 | Msa1288560 | 0.806410 | 8.339275e-50 | -8.615850e-47 |
| Msa0846350 | Msa1288560 | 0.810838 | 9.447925e-51 | -8.615850e-47 |
| Msa0848960 | Msa1288560 | 0.811199 | 7.888558e-51 | -8.615850e-47 |
| Msa0849030 | Msa1288560 | 0.816039 | 6.790866e-52 | -8.615850e-47 |
| Msa0853610 | Msa1288560 | 0.820169 | 7.905628e-53 | -8.615850e-47 |
| Msa0858980 | Msa1288560 | 0.833470 | 5.236435e-56 | -8.615850e-47 |
| Msa0864070 | Msa1288560 | 0.820816 | 5.614785e-53 | -8.615850e-47 |
| Msa0877250 | Msa1288560 | 0.843547 | 1.310357e-58 | -8.615850e-47 |
| Msa0888130 | Msa1288560 | 0.817044 | 4.043317e-52 | -8.615850e-47 |
| Msa0888370 | Msa1288560 | 0.809496 | 1.839026e-50 | -8.615850e-47 |
| Msa0888420 | Msa1288560 | 0.856751 | 2.602454e-62 | -8.615850e-47 |
| Msa0897330 | Msa1288560 | 0.825509 | 4.510404e-54 | -8.615850e-47 |
| Msa0899430 | Msa1288560 | 0.856151 | 3.904128e-62 | -8.615850e-47 |
| Msa0899450 | Msa1288560 | 0.834111 | 3.619667e-56 | -8.615850e-47 |
| Msa0900910 | Msa1288560 | 0.800804 | 1.213887e-48 | -8.615850e-47 |
| Msa0901070 | Msa1288560 | 0.802197 | 6.289707e-49 | -8.615850e-47 |
| Msa0907260 | Msa1288560 | 0.804276 | 2.334766e-49 | -8.615850e-47 |
| Msa0914760 | Msa1288560 | 0.867412 | 1.395007e-65 | -8.615850e-47 |
| Msa0927380 | Msa1288560 | 0.838843 | 2.260492e-57 | -8.615850e-47 |
| Msa0933100 | Msa1288560 | 0.804703 | 1.902319e-49 | -8.615850e-47 |
| Msa0936300 | Msa1288560 | 0.815873 | 7.397538e-52 | -8.615850e-47 |
| Msa0947660 | Msa1288560 | 0.802461 | 5.550061e-49 | -8.615850e-47 |
| Msa0952720 | Msa1288560 | 0.882601 | 9.083935e-71 | -8.615850e-47 |
| Msa0953120 | Msa1288560 | 0.807568 | 4.743990e-50 | -8.615850e-47 |
| Msa0956270 | Msa1288560 | 0.809036 | 2.307637e-50 | -8.615850e-47 |
| Msa0958550 | Msa1288560 | 0.855359 | 6.651683e-62 | -8.615850e-47 |
| Msa0964900 | Msa1288560 | 0.831224 | 1.884744e-55 | -8.615850e-47 |
| Msa0966750 | Msa1288560 | 0.835944 | 1.249630e-56 | -8.615850e-47 |
| Msa0966760 | Msa1288560 | 0.812271 | 4.611437e-51 | -8.615850e-47 |
| Msa0969520 | Msa1288560 | 0.806913 | 6.529426e-50 | -8.615850e-47 |
| Msa0973100 | Msa1288560 | 0.830155 | 3.443275e-55 | -8.615850e-47 |
| Msa0974070 | Msa1288560 | 0.813216 | 2.863729e-51 | -8.615850e-47 |
| Msa0974080 | Msa1288560 | 0.839535 | 1.494848e-57 | -8.615850e-47 |
| Msa0976670 | Msa1288560 | 0.808614 | 2.839802e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288560 | MtrunA17_Chr5g0393511 | 40.994 | 161 | 83 | 4 | 4 | 160 | 9 | 161 | 4.41e-38 | 127 |
| Msa1288560 | MtrunA17_Chr8g0359031 | 43.750 | 144 | 72 | 3 | 25 | 160 | 19 | 161 | 1.97e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTGCTATGTTAAATTTC+TGG | 0.153996 | 8_3:+41609485 | Msa1288560:CDS |
| TGGGAGGTGCTGATTCATTC+TGG | 0.307310 | 8_3:+41609112 | Msa1288560:CDS |
| CTTCTCTGCATCAACCTTAC+TGG | 0.321088 | 8_3:-41608969 | None:intergenic |
| GTTTAAGATGGACAGTAATC+CGG | 0.386700 | 8_3:+41609461 | Msa1288560:CDS |
| TACATTTGTTGAAGCGAGTA+AGG | 0.420870 | 8_3:+41609416 | Msa1288560:CDS |
| AGACATGGAGGAACCGGTAT+TGG | 0.457153 | 8_3:-41609070 | None:intergenic |
| TGAATGTTCGAACAAATTCA+TGG | 0.458298 | 8_3:+41609092 | Msa1288560:CDS |
| CGAATTCCATTCCACATCAA+TGG | 0.458515 | 8_3:+41609252 | Msa1288560:CDS |
| GCAGGTTCTACATCAATTTG+AGG | 0.461169 | 8_3:-41609031 | None:intergenic |
| TGACAGATTGTTGTTTAAGA+TGG | 0.463808 | 8_3:+41609449 | Msa1288560:CDS |
| ACATTCAGACATGGAGGAAC+CGG | 0.479236 | 8_3:-41609076 | None:intergenic |
| AATGTCAGAGTCTCTTTCCC+AGG | 0.481300 | 8_3:-41609288 | None:intergenic |
| TTTAAGATGGACAGTAATCC+GGG | 0.497303 | 8_3:+41609462 | Msa1288560:CDS |
| AAAGATCCATTGATGTGGAA+TGG | 0.510519 | 8_3:-41609258 | None:intergenic |
| TATGTGCAGAAGAAATTCAT+AGG | 0.511115 | 8_3:+41609381 | Msa1288560:CDS |
| ATGCAATATTCGAATGAAGA+AGG | 0.515264 | 8_3:+41608992 | Msa1288560:CDS |
| GGCTCACGGTAATCATCTGC+AGG | 0.521858 | 8_3:-41609049 | None:intergenic |
| AAGATGCAGTTGATGCGATC+TGG | 0.525388 | 8_3:+41609331 | Msa1288560:CDS |
| TGCAGAAGAAATTCATAGGA+AGG | 0.530136 | 8_3:+41609385 | Msa1288560:CDS |
| TAGATTACCAGCTTATGAGT+TGG | 0.531267 | 8_3:-41609145 | None:intergenic |
| TTCTTCTGCACATAATCACC+AGG | 0.548008 | 8_3:-41609372 | None:intergenic |
| TTTACGTCCAACTCATAAGC+TGG | 0.553121 | 8_3:+41609138 | Msa1288560:CDS |
| CAGAAGAAATTCATAGGAAG+GGG | 0.562018 | 8_3:+41609387 | Msa1288560:CDS |
| TGATTACCGTGAGCCAATAC+CGG | 0.564459 | 8_3:+41609057 | Msa1288560:CDS |
| AGAAATTCATAGGAAGGGGT+TGG | 0.574152 | 8_3:+41609391 | Msa1288560:CDS |
| GAAGCGAGTAAGGTGAAAGT+TGG | 0.578483 | 8_3:+41609426 | Msa1288560:CDS |
| GCAGAAGAAATTCATAGGAA+GGG | 0.580030 | 8_3:+41609386 | Msa1288560:CDS |
| GAATGTTCGAACAAATTCAT+GGG | 0.580892 | 8_3:+41609093 | Msa1288560:CDS |
| AGAGACTCTGACATTGACAT+TGG | 0.584037 | 8_3:+41609296 | Msa1288560:CDS |
| TTACTGCAGTGAGTCCAGTA+AGG | 0.589344 | 8_3:+41608955 | Msa1288560:intron |
| AATTTAACATAGCAATTACC+CGG | 0.590991 | 8_3:-41609480 | None:intergenic |
| CACGAAAAGATCCATTGATG+TGG | 0.608405 | 8_3:-41609263 | None:intergenic |
| TTTGTTCGAACATTCAGACA+TGG | 0.613761 | 8_3:-41609085 | None:intergenic |
| TGAGAATGGCAACATTGAAG+AGG | 0.623240 | 8_3:+41608858 | None:intergenic |
| GAGGAACCGGTATTGGCTCA+CGG | 0.632876 | 8_3:-41609063 | None:intergenic |
| CAATATTCGAATGAAGAAGG+AGG | 0.651295 | 8_3:+41608995 | Msa1288560:CDS |
| TGTGATATTGATGTTGAACC+TGG | 0.654348 | 8_3:+41609354 | Msa1288560:CDS |
| GTTCGAACATTCAGACATGG+AGG | 0.688432 | 8_3:-41609082 | None:intergenic |
| TGTTCGAACAAATTCATGGG+AGG | 0.689256 | 8_3:+41609096 | Msa1288560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTAACATAAAGTAA+GGG | - | chr8_3:41609179-41609198 | None:intergenic | 15.0% |
| !! | TATAAAACTAACATAAAGTA+AGG | - | chr8_3:41609180-41609199 | None:intergenic | 15.0% |
| !! | TAATTGCTATGTTAAATTTC+TGG | + | chr8_3:41609485-41609504 | Msa1288560:CDS | 20.0% |
| ! | TGAAGAGGTAATAAAGTTTA+TGG | + | chr8_3:41608873-41608892 | Msa1288560:intron | 25.0% |
| ! | AGTATCAAGTCAACATAAAA+TGG | - | chr8_3:41608926-41608945 | None:intergenic | 25.0% |
| ! | AATTTAACATAGCAATTACC+CGG | - | chr8_3:41609483-41609502 | None:intergenic | 25.0% |
| ATGCAATATTCGAATGAAGA+AGG | + | chr8_3:41608992-41609011 | Msa1288560:CDS | 30.0% | |
| TGAATGTTCGAACAAATTCA+TGG | + | chr8_3:41609092-41609111 | Msa1288560:CDS | 30.0% | |
| GAATGTTCGAACAAATTCAT+GGG | + | chr8_3:41609093-41609112 | Msa1288560:CDS | 30.0% | |
| TATGTGCAGAAGAAATTCAT+AGG | + | chr8_3:41609381-41609400 | Msa1288560:CDS | 30.0% | |
| !! | TGACAGATTGTTGTTTAAGA+TGG | + | chr8_3:41609449-41609468 | Msa1288560:CDS | 30.0% |
| CAATATTCGAATGAAGAAGG+AGG | + | chr8_3:41608995-41609014 | Msa1288560:CDS | 35.0% | |
| TTTGTTCGAACATTCAGACA+TGG | - | chr8_3:41609088-41609107 | None:intergenic | 35.0% | |
| TAGATTACCAGCTTATGAGT+TGG | - | chr8_3:41609148-41609167 | None:intergenic | 35.0% | |
| AAAGATCCATTGATGTGGAA+TGG | - | chr8_3:41609261-41609280 | None:intergenic | 35.0% | |
| TGTGATATTGATGTTGAACC+TGG | + | chr8_3:41609354-41609373 | Msa1288560:CDS | 35.0% | |
| TGCAGAAGAAATTCATAGGA+AGG | + | chr8_3:41609385-41609404 | Msa1288560:CDS | 35.0% | |
| GCAGAAGAAATTCATAGGAA+GGG | + | chr8_3:41609386-41609405 | Msa1288560:CDS | 35.0% | |
| CAGAAGAAATTCATAGGAAG+GGG | + | chr8_3:41609387-41609406 | Msa1288560:CDS | 35.0% | |
| ! | TACATTTGTTGAAGCGAGTA+AGG | + | chr8_3:41609416-41609435 | Msa1288560:CDS | 35.0% |
| ! | GTTTAAGATGGACAGTAATC+CGG | + | chr8_3:41609461-41609480 | Msa1288560:CDS | 35.0% |
| ! | TTTAAGATGGACAGTAATCC+GGG | + | chr8_3:41609462-41609481 | Msa1288560:CDS | 35.0% |
| GCAGGTTCTACATCAATTTG+AGG | - | chr8_3:41609034-41609053 | None:intergenic | 40.0% | |
| TGTTCGAACAAATTCATGGG+AGG | + | chr8_3:41609096-41609115 | Msa1288560:CDS | 40.0% | |
| TTTACGTCCAACTCATAAGC+TGG | + | chr8_3:41609138-41609157 | Msa1288560:CDS | 40.0% | |
| CGAATTCCATTCCACATCAA+TGG | + | chr8_3:41609252-41609271 | Msa1288560:CDS | 40.0% | |
| CACGAAAAGATCCATTGATG+TGG | - | chr8_3:41609266-41609285 | None:intergenic | 40.0% | |
| ! | AATGGATCTTTTCGTGAACC+TGG | + | chr8_3:41609270-41609289 | Msa1288560:CDS | 40.0% |
| ! | ATGGATCTTTTCGTGAACCT+GGG | + | chr8_3:41609271-41609290 | Msa1288560:CDS | 40.0% |
| AGAGACTCTGACATTGACAT+TGG | + | chr8_3:41609296-41609315 | Msa1288560:CDS | 40.0% | |
| TTCTTCTGCACATAATCACC+AGG | - | chr8_3:41609375-41609394 | None:intergenic | 40.0% | |
| AGAAATTCATAGGAAGGGGT+TGG | + | chr8_3:41609391-41609410 | Msa1288560:CDS | 40.0% | |
| TTACTGCAGTGAGTCCAGTA+AGG | + | chr8_3:41608955-41608974 | Msa1288560:intron | 45.0% | |
| CTTCTCTGCATCAACCTTAC+TGG | - | chr8_3:41608972-41608991 | None:intergenic | 45.0% | |
| TGATTACCGTGAGCCAATAC+CGG | + | chr8_3:41609057-41609076 | Msa1288560:CDS | 45.0% | |
| ACATTCAGACATGGAGGAAC+CGG | - | chr8_3:41609079-41609098 | None:intergenic | 45.0% | |
| GTTCGAACATTCAGACATGG+AGG | - | chr8_3:41609085-41609104 | None:intergenic | 45.0% | |
| AATGTCAGAGTCTCTTTCCC+AGG | - | chr8_3:41609291-41609310 | None:intergenic | 45.0% | |
| ! | AAGATGCAGTTGATGCGATC+TGG | + | chr8_3:41609331-41609350 | Msa1288560:CDS | 45.0% |
| GAAGCGAGTAAGGTGAAAGT+TGG | + | chr8_3:41609426-41609445 | Msa1288560:CDS | 45.0% | |
| AGACATGGAGGAACCGGTAT+TGG | - | chr8_3:41609073-41609092 | None:intergenic | 50.0% | |
| !! | TGGGAGGTGCTGATTCATTC+TGG | + | chr8_3:41609112-41609131 | Msa1288560:CDS | 50.0% |
| GGCTCACGGTAATCATCTGC+AGG | - | chr8_3:41609052-41609071 | None:intergenic | 55.0% | |
| !! | GAGGAACCGGTATTGGCTCA+CGG | - | chr8_3:41609066-41609085 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 41608863 | 41609521 | 41608863 | ID=Msa1288560;Name=Msa1288560 |
| chr8_3 | mRNA | 41608863 | 41609521 | 41608863 | ID=Msa1288560-mRNA-1;Parent=Msa1288560;Name=Msa1288560-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|0.66|1|1|3|0|160 |
| chr8_3 | exon | 41608863 | 41608879 | 41608863 | ID=Msa1288560-mRNA-1:exon:11410;Parent=Msa1288560-mRNA-1 |
| chr8_3 | exon | 41608964 | 41609159 | 41608964 | ID=Msa1288560-mRNA-1:exon:11411;Parent=Msa1288560-mRNA-1 |
| chr8_3 | exon | 41609252 | 41609521 | 41609252 | ID=Msa1288560-mRNA-1:exon:11412;Parent=Msa1288560-mRNA-1 |
| chr8_3 | CDS | 41608863 | 41608879 | 41608863 | ID=Msa1288560-mRNA-1:cds;Parent=Msa1288560-mRNA-1 |
| chr8_3 | CDS | 41608964 | 41609159 | 41608964 | ID=Msa1288560-mRNA-1:cds;Parent=Msa1288560-mRNA-1 |
| chr8_3 | CDS | 41609252 | 41609521 | 41609252 | ID=Msa1288560-mRNA-1:cds;Parent=Msa1288560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
