Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120610 | AES80584.1 | 79.741 | 232 | 24 | 2 | 1 | 209 | 33 | 264 | 2.98e-122 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120610 | sp|F4HQ23|LRL27_ARATH | 26.768 | 198 | 112 | 7 | 11 | 186 | 33 | 219 | 6.02e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120610 | G7KUD4 | 79.741 | 232 | 24 | 2 | 1 | 209 | 33 | 264 | 1.42e-122 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002240 | Msa1120610 | 0.800718 | 1.263456e-48 | -8.615850e-47 |
| Msa0044330 | Msa1120610 | 0.803843 | 2.872060e-49 | -8.615850e-47 |
| Msa0047110 | Msa1120610 | 0.803991 | 2.675982e-49 | -8.615850e-47 |
| Msa0610800 | Msa1120610 | 0.800498 | 1.401398e-48 | -8.615850e-47 |
| Msa0613340 | Msa1120610 | 0.807442 | 5.044534e-50 | -8.615850e-47 |
| Msa0613440 | Msa1120610 | 0.813584 | 2.377007e-51 | -8.615850e-47 |
| Msa0615010 | Msa1120610 | 0.810952 | 8.925724e-51 | -8.615850e-47 |
| Msa0632740 | Msa1120610 | 0.803786 | 2.952073e-49 | -8.615850e-47 |
| Msa0639610 | Msa1120610 | 0.801989 | 6.939724e-49 | -8.615850e-47 |
| Msa0645300 | Msa1120610 | 0.807558 | 4.765982e-50 | -8.615850e-47 |
| Msa0661650 | Msa1120610 | 0.801531 | 8.618135e-49 | -8.615850e-47 |
| Msa0694370 | Msa1120610 | 0.804834 | 1.786161e-49 | -8.615850e-47 |
| Msa0701010 | Msa1120610 | 0.834384 | 3.092512e-56 | -8.615850e-47 |
| Msa0729800 | Msa1120610 | 0.802207 | 6.258088e-49 | -8.615850e-47 |
| Msa0731940 | Msa1120610 | 0.829615 | 4.661339e-55 | -8.615850e-47 |
| Msa0748970 | Msa1120610 | 0.827740 | 1.324207e-54 | -8.615850e-47 |
| Msa0755180 | Msa1120610 | 0.823516 | 1.327876e-53 | -8.615850e-47 |
| Msa0768230 | Msa1120610 | 0.807961 | 3.912733e-50 | -8.615850e-47 |
| Msa0768290 | Msa1120610 | 0.845592 | 3.688422e-59 | -8.615850e-47 |
| Msa0768370 | Msa1120610 | 0.866993 | 1.898108e-65 | -8.615850e-47 |
| Msa0773180 | Msa1120610 | 0.829886 | 4.004911e-55 | -8.615850e-47 |
| Msa0784290 | Msa1120610 | 0.808111 | 3.635625e-50 | -8.615850e-47 |
| Msa0784300 | Msa1120610 | 0.818857 | 1.574770e-52 | -8.615850e-47 |
| Msa0808010 | Msa1120610 | 0.820672 | 6.060162e-53 | -8.615850e-47 |
| Msa0808020 | Msa1120610 | 0.813965 | 1.959317e-51 | -8.615850e-47 |
| Msa0820850 | Msa1120610 | 0.814604 | 1.415962e-51 | -8.615850e-47 |
| Msa0824590 | Msa1120610 | 0.874028 | 9.296514e-68 | -8.615850e-47 |
| Msa0824600 | Msa1120610 | 0.800608 | 1.330520e-48 | -8.615850e-47 |
| Msa0135660 | Msa1120610 | 0.803608 | 3.214234e-49 | -8.615850e-47 |
| Msa0180500 | Msa1120610 | 0.818590 | 1.810465e-52 | -8.615850e-47 |
| Msa0229380 | Msa1120610 | 0.801132 | 1.040122e-48 | -8.615850e-47 |
| Msa0381610 | Msa1120610 | -0.805140 | 1.541021e-49 | -8.615850e-47 |
| Msa0384890 | Msa1120610 | 0.830433 | 2.945117e-55 | -8.615850e-47 |
| Msa0390070 | Msa1120610 | 0.808492 | 3.016629e-50 | -8.615850e-47 |
| Msa0393620 | Msa1120610 | 0.804377 | 2.224632e-49 | -8.615850e-47 |
| Msa0424320 | Msa1120610 | 0.823860 | 1.103412e-53 | -8.615850e-47 |
| Msa0425790 | Msa1120610 | 0.801541 | 8.577143e-49 | -8.615850e-47 |
| Msa0435230 | Msa1120610 | 0.833797 | 4.338915e-56 | -8.615850e-47 |
| Msa0450000 | Msa1120610 | 0.804016 | 2.644031e-49 | -8.615850e-47 |
| Msa0461790 | Msa1120610 | 0.818571 | 1.829007e-52 | -8.615850e-47 |
| Msa0479340 | Msa1120610 | 0.836150 | 1.107784e-56 | -8.615850e-47 |
| Msa0985560 | Msa1120610 | 0.802157 | 6.410486e-49 | -8.615850e-47 |
| Msa0989620 | Msa1120610 | 0.802800 | 4.723427e-49 | -8.615850e-47 |
| Msa0998690 | Msa1120610 | 0.809919 | 1.491041e-50 | -8.615850e-47 |
| Msa1000890 | Msa1120610 | 0.805603 | 1.232484e-49 | -8.615850e-47 |
| Msa1014540 | Msa1120610 | 0.803065 | 4.164572e-49 | -8.615850e-47 |
| Msa1015490 | Msa1120610 | 0.806185 | 9.299379e-50 | -8.615850e-47 |
| Msa1050680 | Msa1120610 | 0.811382 | 7.201215e-51 | -8.615850e-47 |
| Msa1052330 | Msa1120610 | 0.811456 | 6.938967e-51 | -8.615850e-47 |
| Msa1054840 | Msa1120610 | 0.800763 | 1.237309e-48 | -8.615850e-47 |
| Msa1068420 | Msa1120610 | 0.812042 | 5.172904e-51 | -8.615850e-47 |
| Msa1075650 | Msa1120610 | 0.806366 | 8.519034e-50 | -8.615850e-47 |
| Msa1085740 | Msa1120610 | 0.804049 | 2.603167e-49 | -8.615850e-47 |
| Msa0251320 | Msa1120610 | 0.808274 | 3.356682e-50 | -8.615850e-47 |
| Msa0251640 | Msa1120610 | 0.812636 | 3.836369e-51 | -8.615850e-47 |
| Msa0273100 | Msa1120610 | 0.806859 | 6.702767e-50 | -8.615850e-47 |
| Msa0278190 | Msa1120610 | 0.821031 | 5.011576e-53 | -8.615850e-47 |
| Msa0305190 | Msa1120610 | 0.811262 | 7.646193e-51 | -8.615850e-47 |
| Msa0322360 | Msa1120610 | 0.810498 | 1.119034e-50 | -8.615850e-47 |
| Msa0340450 | Msa1120610 | 0.805199 | 1.497725e-49 | -8.615850e-47 |
| Msa0342750 | Msa1120610 | 0.841505 | 4.561609e-58 | -8.615850e-47 |
| Msa0349360 | Msa1120610 | 0.814723 | 1.332682e-51 | -8.615850e-47 |
| Msa1111870 | Msa1120610 | 0.802109 | 6.555602e-49 | -8.615850e-47 |
| Msa1113170 | Msa1120610 | 0.804308 | 2.299204e-49 | -8.615850e-47 |
| Msa1120610 | Msa1121480 | 0.841272 | 5.253670e-58 | -8.615850e-47 |
| Msa1120610 | Msa1121490 | 0.860098 | 2.617272e-63 | -8.615850e-47 |
| Msa1120610 | Msa1137570 | 0.821076 | 4.893690e-53 | -8.615850e-47 |
| Msa1120610 | Msa1156020 | 0.821016 | 5.050458e-53 | -8.615850e-47 |
| Msa1120610 | Msa1162780 | 0.804078 | 2.567127e-49 | -8.615850e-47 |
| Msa1120610 | Msa1185110 | 0.851025 | 1.160792e-60 | -8.615850e-47 |
| Msa1120610 | Msa1210020 | 0.800130 | 1.664899e-48 | -8.615850e-47 |
| Msa1120610 | Msa1276890 | 0.807829 | 4.174885e-50 | -8.615850e-47 |
| Msa1120610 | Msa1277660 | 0.819984 | 8.714198e-53 | -8.615850e-47 |
| Msa1120610 | Msa1282580 | -0.801140 | 1.036346e-48 | -8.615850e-47 |
| Msa1120610 | Msa1284680 | 0.803937 | 2.747039e-49 | -8.615850e-47 |
| Msa1120610 | Msa1288560 | 0.824549 | 7.601673e-54 | -8.615850e-47 |
| Msa1120610 | Msa1298510 | 0.804879 | 1.747727e-49 | -8.615850e-47 |
| Msa1120610 | Msa1366810 | 0.811697 | 6.149131e-51 | -8.615850e-47 |
| Msa1120610 | Msa1387340 | 0.821982 | 3.021991e-53 | -8.615850e-47 |
| Msa1120610 | Msa1394310 | 0.800590 | 1.341701e-48 | -8.615850e-47 |
| Msa1120610 | Msa1410680 | 0.848000 | 8.099338e-60 | -8.615850e-47 |
| Msa1120610 | Msa1420820 | 0.805311 | 1.419156e-49 | -8.615850e-47 |
| Msa1120610 | Msa1422180 | 0.800589 | 1.342703e-48 | -8.615850e-47 |
| Msa1120610 | Msa1466540 | 0.813627 | 2.326364e-51 | -8.615850e-47 |
| Msa0493000 | Msa1120610 | 0.805508 | 1.290275e-49 | -8.615850e-47 |
| Msa0502340 | Msa1120610 | 0.808466 | 3.054403e-50 | -8.615850e-47 |
| Msa0503430 | Msa1120610 | 0.800098 | 1.689850e-48 | -8.615850e-47 |
| Msa0523940 | Msa1120610 | 0.831927 | 1.264747e-55 | -8.615850e-47 |
| Msa0529040 | Msa1120610 | 0.801909 | 7.208856e-49 | -8.615850e-47 |
| Msa0545700 | Msa1120610 | 0.831077 | 2.048098e-55 | -8.615850e-47 |
| Msa0548920 | Msa1120610 | 0.809608 | 1.739562e-50 | -8.615850e-47 |
| Msa0574600 | Msa1120610 | 0.800868 | 1.177628e-48 | -8.615850e-47 |
| Msa0585230 | Msa1120610 | 0.807111 | 5.928254e-50 | -8.615850e-47 |
| Msa0594560 | Msa1120610 | 0.808618 | 2.835276e-50 | -8.615850e-47 |
| Msa0842650 | Msa1120610 | 0.824964 | 6.067066e-54 | -8.615850e-47 |
| Msa0844420 | Msa1120610 | 0.821399 | 4.121605e-53 | -8.615850e-47 |
| Msa0844490 | Msa1120610 | 0.862677 | 4.279074e-64 | -8.615850e-47 |
| Msa0848960 | Msa1120610 | 0.811673 | 6.225354e-51 | -8.615850e-47 |
| Msa0849030 | Msa1120610 | 0.809456 | 1.875148e-50 | -8.615850e-47 |
| Msa0853520 | Msa1120610 | 0.810002 | 1.431207e-50 | -8.615850e-47 |
| Msa0858980 | Msa1120610 | 0.804076 | 2.569943e-49 | -8.615850e-47 |
| Msa0861130 | Msa1120610 | 0.813601 | 2.357089e-51 | -8.615850e-47 |
| Msa0864070 | Msa1120610 | 0.859607 | 3.679008e-63 | -8.615850e-47 |
| Msa0877250 | Msa1120610 | 0.847894 | 8.662290e-60 | -8.615850e-47 |
| Msa0888260 | Msa1120610 | 0.809301 | 2.025069e-50 | -8.615850e-47 |
| Msa0897330 | Msa1120610 | 0.803994 | 2.672211e-49 | -8.615850e-47 |
| Msa0899430 | Msa1120610 | 0.862767 | 4.012583e-64 | -8.615850e-47 |
| Msa0899450 | Msa1120610 | 0.846343 | 2.306045e-59 | -8.615850e-47 |
| Msa0901070 | Msa1120610 | 0.826926 | 2.074721e-54 | -8.615850e-47 |
| Msa0914760 | Msa1120610 | 0.808373 | 3.197659e-50 | -8.615850e-47 |
| Msa0924050 | Msa1120610 | 0.811642 | 6.320483e-51 | -8.615850e-47 |
| Msa0927380 | Msa1120610 | 0.841874 | 3.645737e-58 | -8.615850e-47 |
| Msa0943190 | Msa1120610 | 0.808611 | 2.845186e-50 | -8.615850e-47 |
| Msa0958550 | Msa1120610 | 0.858912 | 5.948353e-63 | -8.615850e-47 |
| Msa0960740 | Msa1120610 | 0.812654 | 3.802075e-51 | -8.615850e-47 |
| Msa0964900 | Msa1120610 | 0.818071 | 2.372759e-52 | -8.615850e-47 |
| Msa0966750 | Msa1120610 | 0.841923 | 3.539257e-58 | -8.615850e-47 |
| Msa0967180 | Msa1120610 | 0.802471 | 5.522033e-49 | -8.615850e-47 |
| Msa0974080 | Msa1120610 | 0.838423 | 2.901877e-57 | -8.615850e-47 |
| Msa0976670 | Msa1120610 | 0.806600 | 7.604734e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120610 | MtrunA17_Chr7g0251061 | 79.741 | 232 | 24 | 2 | 1 | 209 | 33 | 264 | 2.74e-126 | 370 |
| Msa1120610 | MtrunA17_Chr7g0251121 | 57.872 | 235 | 67 | 10 | 1 | 209 | 29 | 257 | 1.18e-80 | 253 |
| Msa1120610 | MtrunA17_Chr7g0251101 | 57.872 | 235 | 67 | 10 | 1 | 209 | 33 | 261 | 5.32e-80 | 251 |
| Msa1120610 | MtrunA17_Chr7g0251091 | 77.124 | 153 | 20 | 3 | 1 | 138 | 1 | 153 | 7.02e-77 | 228 |
| Msa1120610 | MtrunA17_Chr7g0251071 | 54.321 | 243 | 72 | 12 | 1 | 209 | 32 | 269 | 1.20e-72 | 232 |
| Msa1120610 | MtrunA17_Chr7g0251051 | 52.752 | 218 | 67 | 6 | 1 | 205 | 31 | 225 | 2.57e-65 | 212 |
| Msa1120610 | MtrunA17_Chr1g0212811 | 45.492 | 244 | 90 | 12 | 1 | 208 | 20 | 256 | 2.44e-52 | 169 |
| Msa1120610 | MtrunA17_Chr7g0251081 | 100.000 | 38 | 0 | 0 | 172 | 209 | 2 | 39 | 9.01e-20 | 86.3 |
| Msa1120610 | MtrunA17_Chr7g0251131 | 29.954 | 217 | 112 | 9 | 11 | 198 | 32 | 237 | 2.64e-18 | 80.5 |
| Msa1120610 | MtrunA17_Chr7g0251011 | 29.954 | 217 | 112 | 9 | 11 | 198 | 35 | 240 | 3.69e-18 | 80.5 |
| Msa1120610 | MtrunA17_Chr8g0376061 | 28.261 | 230 | 129 | 10 | 6 | 206 | 27 | 249 | 4.04e-17 | 79.3 |
| Msa1120610 | MtrunA17_Chr8g0391231 | 26.230 | 244 | 133 | 14 | 3 | 209 | 24 | 257 | 6.27e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120610 | AT1G18390.1 | 28.070 | 228 | 128 | 11 | 5 | 205 | 25 | 243 | 4.43e-14 | 70.9 |
| Msa1120610 | AT1G66930.2 | 26.768 | 198 | 112 | 7 | 11 | 186 | 33 | 219 | 6.12e-12 | 64.7 |
Find 28 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATGGATGGGAAATTA+TGG | 0.249832 | 7_3:+70122990 | Msa1120610:CDS |
| TTATCGAATGTGCTGTTCTT+AGG | 0.305690 | 7_3:-70122717 | None:intergenic |
| ACTTCGTTGATATTTATCTT+TGG | 0.325710 | 7_3:-70122594 | None:intergenic |
| TGAACATCAAGTATCCATTC+TGG | 0.331522 | 7_3:+70122496 | Msa1120610:CDS |
| CAGTCGCCAGAGATGATTAC+TGG | 0.372478 | 7_3:+70122661 | Msa1120610:CDS |
| TTTAGATGTTTCTGCAAAGA+TGG | 0.375944 | 7_3:+70123074 | Msa1120610:CDS |
| TCGCATGTAAGATCTATGTT+AGG | 0.426387 | 7_3:-70122561 | None:intergenic |
| CGTTGTTGCAGTTTGTGTAT+TGG | 0.453733 | 7_3:-70122449 | None:intergenic |
| ATATTGTGGTGGTGTTTCTT+CGG | 0.454897 | 7_3:+70122536 | Msa1120610:CDS |
| ATTGAGCGTTGCAATTTGTC+CGG | 0.459800 | 7_3:-70122934 | None:intergenic |
| GAACATCAAGTATCCATTCT+GGG | 0.486266 | 7_3:+70122497 | Msa1120610:CDS |
| ACCACTCCAGTAATCATCTC+TGG | 0.493007 | 7_3:-70122667 | None:intergenic |
| AACTTCATGTGCCTCACAAA+AGG | 0.494156 | 7_3:+70123106 | Msa1120610:CDS |
| GTTGATTCTGATGGTGTATG+TGG | 0.513530 | 7_3:+70123029 | Msa1120610:CDS |
| AACACTATGTTTCAAAGTGA+TGG | 0.528238 | 7_3:+70122738 | Msa1120610:CDS |
| CATGTGAGTGAGACGGAAGC+AGG | 0.529693 | 7_3:-70122867 | None:intergenic |
| TAAAGTTTCCTACACAATTG+TGG | 0.540640 | 7_3:+70122842 | Msa1120610:CDS |
| GATATAAACGAAGCATTACA+AGG | 0.553914 | 7_3:+70122957 | Msa1120610:CDS |
| CAAAAGTGTGTTGATTCTGA+TGG | 0.579264 | 7_3:+70123020 | Msa1120610:CDS |
| GGAAACTTTAGTATTACCGC+AGG | 0.610021 | 7_3:-70122829 | None:intergenic |
| GCCAGAGATGATTACTGGAG+TGG | 0.616913 | 7_3:+70122666 | Msa1120610:CDS |
| AGCAGGATCCACAATTGTGT+AGG | 0.653468 | 7_3:-70122850 | None:intergenic |
| CGGAGTACATGTGAGTGAGA+CGG | 0.655647 | 7_3:-70122874 | None:intergenic |
| AACATCAAGTATCCATTCTG+GGG | 0.658534 | 7_3:+70122498 | Msa1120610:CDS |
| GGTGTATGTGGAAGCAACGA+CGG | 0.699910 | 7_3:+70123041 | Msa1120610:CDS |
| ACTATGTTTCAAAGTGATGG+TGG | 0.706305 | 7_3:+70122741 | Msa1120610:CDS |
| GTATGTGGAAGCAACGACGG+AGG | 0.741380 | 7_3:+70123044 | Msa1120610:CDS |
| ATAAACGAAGCATTACAAGG+CGG | 0.787280 | 7_3:+70122960 | Msa1120610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAGAAAAAAATATTG+TGG | + | chr7_3:70122522-70122541 | Msa1120610:CDS | 15.0% |
| !! | AATAGAAAAAAATATTGTGG+TGG | + | chr7_3:70122525-70122544 | Msa1120610:CDS | 20.0% |
| ! | ACTTCGTTGATATTTATCTT+TGG | - | chr7_3:70122597-70122616 | None:intergenic | 25.0% |
| ! | TATCATTCCAATCAAGAATA+CGG | - | chr7_3:70122626-70122645 | None:intergenic | 25.0% |
| !!! | AATATTTTTAGTACTACCTG+CGG | + | chr7_3:70122813-70122832 | Msa1120610:CDS | 25.0% |
| !! | TATTGTTGAGTTTCCAATTT+TGG | + | chr7_3:70122902-70122921 | Msa1120610:intron | 25.0% |
| TCAAATACCGTATTCTTGAT+TGG | + | chr7_3:70122616-70122635 | Msa1120610:intron | 30.0% | |
| AACACTATGTTTCAAAGTGA+TGG | + | chr7_3:70122738-70122757 | Msa1120610:CDS | 30.0% | |
| TAAAGTTTCCTACACAATTG+TGG | + | chr7_3:70122842-70122861 | Msa1120610:CDS | 30.0% | |
| ! | GATATAAACGAAGCATTACA+AGG | + | chr7_3:70122957-70122976 | Msa1120610:CDS | 30.0% |
| !!! | GGTTTTGATTTGAAATGGAT+GGG | + | chr7_3:70122981-70123000 | Msa1120610:CDS | 30.0% |
| TTGAAATGGATGGGAAATTA+TGG | + | chr7_3:70122990-70123009 | Msa1120610:CDS | 30.0% | |
| ! | TTTAGATGTTTCTGCAAAGA+TGG | + | chr7_3:70123074-70123093 | Msa1120610:CDS | 30.0% |
| TGAACATCAAGTATCCATTC+TGG | + | chr7_3:70122496-70122515 | Msa1120610:CDS | 35.0% | |
| GAACATCAAGTATCCATTCT+GGG | + | chr7_3:70122497-70122516 | Msa1120610:CDS | 35.0% | |
| AACATCAAGTATCCATTCTG+GGG | + | chr7_3:70122498-70122517 | Msa1120610:CDS | 35.0% | |
| ! | TTTCTATTTTCTCCCCAGAA+TGG | - | chr7_3:70122513-70122532 | None:intergenic | 35.0% |
| ! | ATATTGTGGTGGTGTTTCTT+CGG | + | chr7_3:70122536-70122555 | Msa1120610:CDS | 35.0% |
| TCGCATGTAAGATCTATGTT+AGG | - | chr7_3:70122564-70122583 | None:intergenic | 35.0% | |
| ! | TTATCGAATGTGCTGTTCTT+AGG | - | chr7_3:70122720-70122739 | None:intergenic | 35.0% |
| ACTATGTTTCAAAGTGATGG+TGG | + | chr7_3:70122741-70122760 | Msa1120610:CDS | 35.0% | |
| GGAAACTCAACAATAACACT+CGG | - | chr7_3:70122897-70122916 | None:intergenic | 35.0% | |
| ! | ATAAACGAAGCATTACAAGG+CGG | + | chr7_3:70122960-70122979 | Msa1120610:CDS | 35.0% |
| !!! | AAGGCGGTTTTGATTTGAAA+TGG | + | chr7_3:70122976-70122995 | Msa1120610:CDS | 35.0% |
| !!! | CGGTTTTGATTTGAAATGGA+TGG | + | chr7_3:70122980-70122999 | Msa1120610:CDS | 35.0% |
| !! | CAAAAGTGTGTTGATTCTGA+TGG | + | chr7_3:70123020-70123039 | Msa1120610:CDS | 35.0% |
| CGTTGTTGCAGTTTGTGTAT+TGG | - | chr7_3:70122452-70122471 | None:intergenic | 40.0% | |
| !! | TGCAACAACGCTTTTAACTG+CGG | + | chr7_3:70122462-70122481 | Msa1120610:CDS | 40.0% |
| GGAAACTTTAGTATTACCGC+AGG | - | chr7_3:70122832-70122851 | None:intergenic | 40.0% | |
| ! | ATTGAGCGTTGCAATTTGTC+CGG | - | chr7_3:70122937-70122956 | None:intergenic | 40.0% |
| ! | GTTGATTCTGATGGTGTATG+TGG | + | chr7_3:70123029-70123048 | Msa1120610:CDS | 40.0% |
| ACCACTCCAGTAATCATCTC+TGG | - | chr7_3:70122670-70122689 | None:intergenic | 45.0% | |
| AGCAGGATCCACAATTGTGT+AGG | - | chr7_3:70122853-70122872 | None:intergenic | 45.0% | |
| !! | CCAATTTTGGCAGTCAAAGC+CGG | + | chr7_3:70122915-70122934 | Msa1120610:intron | 45.0% |
| CAGTCGCCAGAGATGATTAC+TGG | + | chr7_3:70122661-70122680 | Msa1120610:CDS | 50.0% | |
| GCCAGAGATGATTACTGGAG+TGG | + | chr7_3:70122666-70122685 | Msa1120610:CDS | 50.0% | |
| CGGAGTACATGTGAGTGAGA+CGG | - | chr7_3:70122877-70122896 | None:intergenic | 50.0% | |
| ! | CCGGCTTTGACTGCCAAAAT+TGG | - | chr7_3:70122918-70122937 | None:intergenic | 50.0% |
| GGTGTATGTGGAAGCAACGA+CGG | + | chr7_3:70123041-70123060 | Msa1120610:CDS | 50.0% | |
| CATGTGAGTGAGACGGAAGC+AGG | - | chr7_3:70122870-70122889 | None:intergenic | 55.0% | |
| GTATGTGGAAGCAACGACGG+AGG | + | chr7_3:70123044-70123063 | Msa1120610:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 70122432 | 70123127 | 70122432 | ID=Msa1120610;Name=Msa1120610 |
| chr7_3 | mRNA | 70122432 | 70123127 | 70122432 | ID=Msa1120610-mRNA-1;Parent=Msa1120610;Name=Msa1120610-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|0.5|0.66|3|0|209 |
| chr7_3 | exon | 70122432 | 70122614 | 70122432 | ID=Msa1120610-mRNA-1:exon:17855;Parent=Msa1120610-mRNA-1 |
| chr7_3 | exon | 70122654 | 70122897 | 70122654 | ID=Msa1120610-mRNA-1:exon:17856;Parent=Msa1120610-mRNA-1 |
| chr7_3 | exon | 70122928 | 70123127 | 70122928 | ID=Msa1120610-mRNA-1:exon:17857;Parent=Msa1120610-mRNA-1 |
| chr7_3 | CDS | 70122432 | 70122614 | 70122432 | ID=Msa1120610-mRNA-1:cds;Parent=Msa1120610-mRNA-1 |
| chr7_3 | CDS | 70122654 | 70122897 | 70122654 | ID=Msa1120610-mRNA-1:cds;Parent=Msa1120610-mRNA-1 |
| chr7_3 | CDS | 70122928 | 70123127 | 70122928 | ID=Msa1120610-mRNA-1:cds;Parent=Msa1120610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
