Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009670 | XP_003621548.1 | 88.036 | 443 | 28 | 4 | 1 | 439 | 1 | 422 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009670 | Q2HSE9 | 88.036 | 443 | 28 | 4 | 1 | 439 | 1 | 422 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0738970 | Msa1009670 | 0.827403 | 1.594906e-54 | -8.615850e-47 |
| Msa0819470 | Msa1009670 | 0.824714 | 6.950874e-54 | -8.615850e-47 |
| Msa0841490 | Msa1009670 | 0.800319 | 1.524196e-48 | -8.615850e-47 |
| Msa0185550 | Msa1009670 | 0.803758 | 2.991762e-49 | -8.615850e-47 |
| Msa0207180 | Msa1009670 | 0.852578 | 4.210192e-61 | -8.615850e-47 |
| Msa0230400 | Msa1009670 | 0.848392 | 6.311891e-60 | -8.615850e-47 |
| Msa0380420 | Msa1009670 | 0.810762 | 9.809012e-51 | -8.615850e-47 |
| Msa0382290 | Msa1009670 | 0.810514 | 1.109728e-50 | -8.615850e-47 |
| Msa0392410 | Msa1009670 | 0.822193 | 2.700759e-53 | -8.615850e-47 |
| Msa0392450 | Msa1009670 | 0.840026 | 1.113788e-57 | -8.615850e-47 |
| Msa0392480 | Msa1009670 | 0.828196 | 1.028580e-54 | -8.615850e-47 |
| Msa1009670 | Msa1050920 | 0.887025 | 2.048497e-72 | -8.615850e-47 |
| Msa1009670 | Msa1137950 | 0.885379 | 8.554758e-72 | -8.615850e-47 |
| Msa1009670 | Msa1180410 | 0.806046 | 9.950496e-50 | -8.615850e-47 |
| Msa1009670 | Msa1232010 | 0.819548 | 1.096276e-52 | -8.615850e-47 |
| Msa1009670 | Msa1232860 | 0.805999 | 1.017578e-49 | -8.615850e-47 |
| Msa1009670 | Msa1258810 | 0.800237 | 1.583945e-48 | -8.615850e-47 |
| Msa1009670 | Msa1274740 | 0.807433 | 5.068154e-50 | -8.615850e-47 |
| Msa1009670 | Msa1306540 | 0.800192 | 1.617028e-48 | -8.615850e-47 |
| Msa1009670 | Msa1312730 | 0.810148 | 1.331069e-50 | -8.615850e-47 |
| Msa1009670 | Msa1367410 | 0.810143 | 1.334326e-50 | -8.615850e-47 |
| Msa1009670 | Msa1375630 | 0.810986 | 8.772394e-51 | -8.615850e-47 |
| Msa1009670 | Msa1376530 | 0.817447 | 3.282542e-52 | -8.615850e-47 |
| Msa1009670 | Msa1417650 | 0.816195 | 6.267372e-52 | -8.615850e-47 |
| Msa1009670 | Msa1435670 | 0.806776 | 6.978953e-50 | -8.615850e-47 |
| Msa1009670 | Msa1437150 | 0.826859 | 2.152709e-54 | -8.615850e-47 |
| Msa1009670 | Msa1439680 | 0.800573 | 1.352435e-48 | -8.615850e-47 |
| Msa0261740 | Msa1009670 | 0.811197 | 7.898524e-51 | -8.615850e-47 |
| Msa0274780 | Msa1009670 | 0.830935 | 2.219301e-55 | -8.615850e-47 |
| Msa0315480 | Msa1009670 | 0.841063 | 5.964715e-58 | -8.615850e-47 |
| Msa0337100 | Msa1009670 | 0.801945 | 7.084508e-49 | -8.615850e-47 |
| Msa0344580 | Msa1009670 | 0.818184 | 2.237859e-52 | -8.615850e-47 |
| Msa0487560 | Msa1009670 | 0.844724 | 6.332818e-59 | -8.615850e-47 |
| Msa0487620 | Msa1009670 | 0.851847 | 6.798018e-61 | -8.615850e-47 |
| Msa0524210 | Msa1009670 | 0.811874 | 5.628333e-51 | -8.615850e-47 |
| Msa0547050 | Msa1009670 | 0.805135 | 1.545106e-49 | -8.615850e-47 |
| Msa0859390 | Msa1009670 | 0.823765 | 1.161396e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009670 | MtrunA17_Chr7g0220261 | 86.340 | 388 | 31 | 3 | 53 | 439 | 10 | 376 | 1.26e-159 | 457 |
| Msa1009670 | MtrunA17_Chr6g0455531 | 65.772 | 149 | 48 | 2 | 19 | 167 | 28 | 173 | 1.78e-50 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTTGTAATGGATTATT+AGG | 0.139809 | 7_1:-11491170 | None:intergenic |
| GGTGGCTGAAATGGATTATT+AGG | 0.210524 | 7_1:-11491620 | None:intergenic |
| GGTGGTTGTGATGGATTATT+AGG | 0.215491 | 7_1:-11491293 | None:intergenic |
| GGTGGTTGTAAAGGATTATT+AGG | 0.236220 | 7_1:-11491542 | None:intergenic |
| ATGGGAAATCATTTCATTTC+AGG | 0.252182 | 7_1:+11489888 | Msa1009670:CDS |
| CAAGGAACCAAGACATTCTA+AGG | 0.262607 | 7_1:-11489737 | None:intergenic |
| TTGACTTGTTTCTTGAATCT+TGG | 0.263993 | 7_1:-11490570 | None:intergenic |
| GGGACTAATGGTGGTGGATT+AGG | 0.268729 | 7_1:-11491272 | None:intergenic |
| GGTGGTTGTAATGGATTATT+AGG | 0.271477 | 7_1:-11491239 | None:intergenic |
| AATATTGGTGTAAGAATTTC+AGG | 0.284581 | 7_1:-11490981 | None:intergenic |
| AGAGGAATTGTTGGATGAAA+TGG | 0.304335 | 7_1:-11491338 | None:intergenic |
| CATAGATTTGGTTGTTTAAG+TGG | 0.335597 | 7_1:-11490798 | None:intergenic |
| GACAATTCTGGTGGCAATAT+TGG | 0.339985 | 7_1:-11490996 | None:intergenic |
| TGGATTAGGAGGAAGGTTAA+AGG | 0.341986 | 7_1:-11491498 | None:intergenic |
| ATTGTTGGATGAAATGGATT+AGG | 0.344656 | 7_1:-11491332 | None:intergenic |
| ACAATATCTTATATACTATA+TGG | 0.349238 | 7_1:-11489692 | None:intergenic |
| GGACTAATGGTGGTGGATTA+GGG | 0.370117 | 7_1:-11491271 | None:intergenic |
| CCTGATGGAGGTGGCTGAAA+TGG | 0.373008 | 7_1:-11491629 | None:intergenic |
| GGGATTAGTGGTGACAATTC+TGG | 0.374287 | 7_1:-11491008 | None:intergenic |
| GATATTGTAGACCCTTTGTA+AGG | 0.378968 | 7_1:+11489707 | Msa1009670:five_prime_UTR |
| ACATGTTTGCTCACTGAGAA+TGG | 0.386130 | 7_1:-11490627 | None:intergenic |
| GTTGGTGGTTGAAATGGATT+AGG | 0.386966 | 7_1:-11491581 | None:intergenic |
| CTGTTTCTGATTGTAACATT+TGG | 0.391776 | 7_1:+11489765 | Msa1009670:CDS |
| ACTAATGGTGTTGGAGTTGG+TGG | 0.405016 | 7_1:-11491596 | None:intergenic |
| AATGGATTATTAGGGACTAA+TGG | 0.406439 | 7_1:-11491161 | None:intergenic |
| AATGGATTATTAGGAACTAA+TGG | 0.406439 | 7_1:-11491230 | None:intergenic |
| GTGGTTGTAATGGATTATTA+GGG | 0.406491 | 7_1:-11491169 | None:intergenic |
| GTTGGAGTTGGTGGTTGAAA+TGG | 0.406729 | 7_1:-11491587 | None:intergenic |
| TTAGGAATTGTTGGTGTACT+TGG | 0.409689 | 7_1:-11491563 | None:intergenic |
| GGGTTTGGATCTTGAAGTGG+GGG | 0.411587 | 7_1:-11490915 | None:intergenic |
| AAAGGATTATTAGGAACTAA+TGG | 0.416901 | 7_1:-11491533 | None:intergenic |
| GTGGTTGTGATGGATTATTA+GGG | 0.425540 | 7_1:-11491292 | None:intergenic |
| TTAGGAATAGTTGGTGTACT+TGG | 0.427639 | 7_1:-11491191 | None:intergenic |
| GTCATTCCACTAGGGATTAG+TGG | 0.431829 | 7_1:-11491020 | None:intergenic |
| GGGGTTTGGATCTTGAAGTG+GGG | 0.440503 | 7_1:-11490916 | None:intergenic |
| GAGGAAGGTTAAAGGAATCA+AGG | 0.440757 | 7_1:-11491490 | None:intergenic |
| CCTCTTTCTGCTGTTGTGGT+TGG | 0.441706 | 7_1:+11489825 | Msa1009670:CDS |
| GGTGTACTTGGTGGTTGTAA+TGG | 0.446794 | 7_1:-11491179 | None:intergenic |
| ACTAATGGTGGTGGTTGAAA+TGG | 0.448499 | 7_1:-11491215 | None:intergenic |
| GCTGAGGCTATAGAACAAAA+TGG | 0.449700 | 7_1:-11490696 | None:intergenic |
| ACTAATGTTGGTGGTTGTAA+TGG | 0.452664 | 7_1:-11491248 | None:intergenic |
| ATTTCAGGTGCTAAAGGAAC+TGG | 0.456654 | 7_1:-11490966 | None:intergenic |
| AATGGATTATTAGGGACTAA+TGG | 0.457185 | 7_1:-11491611 | None:intergenic |
| TGAAATGGATTAGGAATTGT+TGG | 0.458365 | 7_1:-11491572 | None:intergenic |
| GGTGGTGGTTGAAATGGATT+AGG | 0.459525 | 7_1:-11491209 | None:intergenic |
| GATGGATTATTAGGGACTAA+TGG | 0.461210 | 7_1:-11491284 | None:intergenic |
| GGGACTAGTGGTGACAATAT+TGG | 0.463726 | 7_1:-11491380 | None:intergenic |
| GGTGTACTTGGTGGTTGTGA+TGG | 0.464461 | 7_1:-11491302 | None:intergenic |
| TGATGTAATAGAGGAATTGT+TGG | 0.472559 | 7_1:-11491347 | None:intergenic |
| GGGACTAATGGTGTTGGAGT+TGG | 0.475306 | 7_1:-11491599 | None:intergenic |
| GAAGCCTCTTTCTGCTGTTG+TGG | 0.476820 | 7_1:+11489821 | Msa1009670:CDS |
| TGAAATGGATTAGGAATAGT+TGG | 0.478986 | 7_1:-11491200 | None:intergenic |
| GTGGCTGAAATGGATTATTA+GGG | 0.480817 | 7_1:-11491619 | None:intergenic |
| GGTGTACTTGGTGGTTGTAA+AGG | 0.486946 | 7_1:-11491551 | None:intergenic |
| GTAAGAATTTCAGGTGCTAA+AGG | 0.488289 | 7_1:-11490972 | None:intergenic |
| CCATTTCAGCCACCTCCATC+AGG | 0.494064 | 7_1:+11491629 | Msa1009670:CDS |
| GGAAGAATTTGATGTAATAG+AGG | 0.494824 | 7_1:-11491356 | None:intergenic |
| TTATTAGGGACTAATGGTGT+TGG | 0.497525 | 7_1:-11491605 | None:intergenic |
| TCATCACTAGCCTTTCCACT+AGG | 0.500789 | 7_1:-11491401 | None:intergenic |
| TTTCAACAGGATTTCTCCAT+GGG | 0.503608 | 7_1:+11489870 | Msa1009670:CDS |
| AAGGTTTGTCCCCTTACAAA+GGG | 0.509147 | 7_1:-11489718 | None:intergenic |
| GGAATTGTTGGTGTACTTGG+TGG | 0.510950 | 7_1:-11491560 | None:intergenic |
| GTTGAAGTAGAATGCAAAGA+TGG | 0.517678 | 7_1:+11490531 | Msa1009670:CDS |
| AAACCTGGTACCGACGGAAA+AGG | 0.517768 | 7_1:-11491668 | None:intergenic |
| GGTGGATTAGGGACTAATGT+TGG | 0.520712 | 7_1:-11491260 | None:intergenic |
| GGACAAACCTTAGAATGTCT+TGG | 0.523095 | 7_1:+11489730 | Msa1009670:exon |
| GGATTAGGGACTAATGTTGG+TGG | 0.526498 | 7_1:-11491257 | None:intergenic |
| GAGGAATGTGAAAAGTATCA+AGG | 0.529046 | 7_1:-11491118 | None:intergenic |
| GGAAAGGAAGAACACCACTA+GGG | 0.536488 | 7_1:-11490938 | None:intergenic |
| TCTTCATTAGTCATTCCACT+AGG | 0.540107 | 7_1:-11491029 | None:intergenic |
| TGCTCACTGAGAATGGAAGT+TGG | 0.540570 | 7_1:-11490620 | None:intergenic |
| AAACATGTGAAGAGAATCAA+AGG | 0.540576 | 7_1:+11490642 | Msa1009670:CDS |
| CAATCAGAAACAGTATTACA+AGG | 0.543756 | 7_1:-11489755 | None:intergenic |
| TTATTAGGGACTAATGGTGG+TGG | 0.550341 | 7_1:-11491278 | None:intergenic |
| AAAGGAACTGGTGGGAGGAA+AGG | 0.551997 | 7_1:-11490954 | None:intergenic |
| GGAATAGTTGGTGTACTTGG+TGG | 0.552196 | 7_1:-11491188 | None:intergenic |
| TTAGGAACAAGTGGTGTACT+TGG | 0.552344 | 7_1:-11491314 | None:intergenic |
| TTATTAGGAACTAATGGTGG+TGG | 0.558410 | 7_1:-11491527 | None:intergenic |
| TGAAATGAAATGATTTCCCA+TGG | 0.558509 | 7_1:-11489886 | None:intergenic |
| CCAACCACAACAGCAGAAAG+AGG | 0.559072 | 7_1:-11489825 | None:intergenic |
| CATCACTAGCCTTTCCACTA+GGG | 0.562196 | 7_1:-11491400 | None:intergenic |
| CACCTAAAATCAAGAAAACA+AGG | 0.564101 | 7_1:+11490738 | Msa1009670:CDS |
| ATATTGTAGACCCTTTGTAA+GGG | 0.564502 | 7_1:+11489708 | Msa1009670:five_prime_UTR |
| CTTCATTAGTCATTCCACTA+GGG | 0.568615 | 7_1:-11491028 | None:intergenic |
| TAAGGTTTGTCCCCTTACAA+AGG | 0.573469 | 7_1:-11489719 | None:intergenic |
| GTCAATATTAAAGATAAAGA+GGG | 0.577065 | 7_1:+11489652 | None:intergenic |
| TTATTAGGGACTAATGGTGG+TGG | 0.585262 | 7_1:-11491155 | None:intergenic |
| TCAGGTGCTAAAGGAACTGG+TGG | 0.587525 | 7_1:-11490963 | None:intergenic |
| TGATGAAGATGAGGCTGCTG+AGG | 0.589656 | 7_1:-11490712 | None:intergenic |
| GCCTTTCCACTAGGGACTAG+TGG | 0.590117 | 7_1:-11491392 | None:intergenic |
| TATTAGGGACTAATGGTGGT+GGG | 0.590783 | 7_1:-11491154 | None:intergenic |
| TATTGTAGACCCTTTGTAAG+GGG | 0.595970 | 7_1:+11489709 | Msa1009670:five_prime_UTR |
| ACCACTAGTCCCTAGTGGAA+AGG | 0.599084 | 7_1:+11491391 | Msa1009670:CDS |
| CAAGTCAAAACAAATGAGCA+TGG | 0.604334 | 7_1:+11490585 | Msa1009670:CDS |
| AGGAAAGGAAGAACACCACT+AGG | 0.607599 | 7_1:-11490939 | None:intergenic |
| GAAAGGAAGAACACCACTAG+GGG | 0.611858 | 7_1:-11490937 | None:intergenic |
| TTATTAGGAACTAATGGTGG+TGG | 0.613397 | 7_1:-11491224 | None:intergenic |
| ACTAGTGGTGACAATATTGG+TGG | 0.614134 | 7_1:-11491377 | None:intergenic |
| GGACTTAAACCTGGTACCGA+CGG | 0.615702 | 7_1:-11491674 | None:intergenic |
| GGATTATTAGGAACTAATGG+TGG | 0.626184 | 7_1:-11491227 | None:intergenic |
| GGATTATTAGGGACTAATGG+TGG | 0.630974 | 7_1:-11491158 | None:intergenic |
| GGTGATGATCCTGATGGAGG+TGG | 0.635840 | 7_1:-11491638 | None:intergenic |
| TGAAATGGATTAGGAACAAG+TGG | 0.638457 | 7_1:-11491323 | None:intergenic |
| GGATTATTAGGGACTAATGG+TGG | 0.639754 | 7_1:-11491281 | None:intergenic |
| GGATTATTAGGAACTAATGG+TGG | 0.653229 | 7_1:-11491530 | None:intergenic |
| GGAACAAGTGGTGTACTTGG+TGG | 0.654056 | 7_1:-11491311 | None:intergenic |
| TAGGTGAAGTGATGAAGATG+AGG | 0.654303 | 7_1:-11490721 | None:intergenic |
| TTGTCACCACTAATCCCTAG+TGG | 0.656373 | 7_1:+11491014 | Msa1009670:CDS |
| ACCGACGGAAAAGGAAACAA+TGG | 0.656858 | 7_1:-11491659 | None:intergenic |
| TTGTCACCACTAGTCCCTAG+TGG | 0.661560 | 7_1:+11491386 | Msa1009670:CDS |
| AAGGAAGAACACCACTAGGG+GGG | 0.663476 | 7_1:-11490935 | None:intergenic |
| GTGCTAAAGGAACTGGTGGG+AGG | 0.667320 | 7_1:-11490959 | None:intergenic |
| AACAATGGTGATGATCCTGA+TGG | 0.671828 | 7_1:-11491644 | None:intergenic |
| AAAGGAAGAACACCACTAGG+GGG | 0.676816 | 7_1:-11490936 | None:intergenic |
| ATTAGTGGTGACAATTCTGG+TGG | 0.683000 | 7_1:-11491005 | None:intergenic |
| CAGGTGCTAAAGGAACTGGT+GGG | 0.724952 | 7_1:-11490962 | None:intergenic |
| AATGGTGATGATCCTGATGG+AGG | 0.729850 | 7_1:-11491641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATCTTATATACTATA+TGG | - | chr7_1:11489695-11489714 | None:intergenic | 15.0% |
| !!! | TCTTATTTTTTTTTTTGCAA+GGG | + | chr7_1:11489934-11489953 | Msa1009670:intron | 15.0% |
| !!! | TTTTATAATATTGCATGAAA+AGG | - | chr7_1:11490182-11490201 | None:intergenic | 15.0% |
| !! | ACAATATCTTATATACTATA+TGG | - | chr7_1:11489695-11489714 | None:intergenic | 15.0% |
| !!! | TCTTATTTTTTTTTTTGCAA+GGG | + | chr7_1:11489934-11489953 | Msa1009670:intron | 15.0% |
| !!! | TTTTATAATATTGCATGAAA+AGG | - | chr7_1:11490182-11490201 | None:intergenic | 15.0% |
| !!! | GTCTTATTTTTTTTTTTGCA+AGG | + | chr7_1:11489933-11489952 | Msa1009670:intron | 20.0% |
| !! | TTATAAAAATCCAAATGAAC+CGG | + | chr7_1:11490194-11490213 | Msa1009670:intron | 20.0% |
| !! | GATTTAATTGGTTAAACTTA+CGG | - | chr7_1:11490381-11490400 | None:intergenic | 20.0% |
| !!! | CACACAAGAATATTTTTTAT+AGG | - | chr7_1:11490500-11490519 | None:intergenic | 20.0% |
| !!! | TTTTGAAGTTTTTGTTGATT+TGG | - | chr7_1:11491435-11491454 | None:intergenic | 20.0% |
| !!! | GTCTTATTTTTTTTTTTGCA+AGG | + | chr7_1:11489933-11489952 | Msa1009670:intron | 20.0% |
| !! | TTATAAAAATCCAAATGAAC+CGG | + | chr7_1:11490194-11490213 | Msa1009670:intron | 20.0% |
| !! | GATTTAATTGGTTAAACTTA+CGG | - | chr7_1:11490381-11490400 | None:intergenic | 20.0% |
| !!! | CACACAAGAATATTTTTTAT+AGG | - | chr7_1:11490500-11490519 | None:intergenic | 20.0% |
| !!! | TTTTGAAGTTTTTGTTGATT+TGG | - | chr7_1:11491435-11491454 | None:intergenic | 20.0% |
| ! | ATAATATTGCATGAAAAGGT+CGG | - | chr7_1:11490178-11490197 | None:intergenic | 25.0% |
| ! | TAAAAAATATTCTTGTGTGC+AGG | + | chr7_1:11490501-11490520 | Msa1009670:intron | 25.0% |
| ! | TGTTGATCAAAACACAAAAA+AGG | + | chr7_1:11490836-11490855 | Msa1009670:CDS | 25.0% |
| ! | AATATTGGTGTAAGAATTTC+AGG | - | chr7_1:11490984-11491003 | None:intergenic | 25.0% |
| !!! | AATGGATTATTAGGAACTAA+TGG | - | chr7_1:11491233-11491252 | None:intergenic | 25.0% |
| !!! | AGTTTTTGTTGATTTGGATT+TGG | - | chr7_1:11491429-11491448 | None:intergenic | 25.0% |
| ! | AAAGGATTATTAGGAACTAA+TGG | - | chr7_1:11491536-11491555 | None:intergenic | 25.0% |
| ! | ATAATATTGCATGAAAAGGT+CGG | - | chr7_1:11490178-11490197 | None:intergenic | 25.0% |
| ! | TAAAAAATATTCTTGTGTGC+AGG | + | chr7_1:11490501-11490520 | Msa1009670:intron | 25.0% |
| ! | TGTTGATCAAAACACAAAAA+AGG | + | chr7_1:11490836-11490855 | Msa1009670:CDS | 25.0% |
| ! | AATATTGGTGTAAGAATTTC+AGG | - | chr7_1:11490984-11491003 | None:intergenic | 25.0% |
| !!! | AATGGATTATTAGGAACTAA+TGG | - | chr7_1:11491233-11491252 | None:intergenic | 25.0% |
| !!! | AGTTTTTGTTGATTTGGATT+TGG | - | chr7_1:11491429-11491448 | None:intergenic | 25.0% |
| ! | AAAGGATTATTAGGAACTAA+TGG | - | chr7_1:11491536-11491555 | None:intergenic | 25.0% |
| ATATTGTAGACCCTTTGTAA+GGG | + | chr7_1:11489708-11489727 | Msa1009670:five_prime_UTR | 30.0% | |
| CAATCAGAAACAGTATTACA+AGG | - | chr7_1:11489758-11489777 | None:intergenic | 30.0% | |
| !! | CTGTTTCTGATTGTAACATT+TGG | + | chr7_1:11489765-11489784 | Msa1009670:CDS | 30.0% |
| ! | AACATTTGGTACATTTTCTG+AGG | + | chr7_1:11489779-11489798 | Msa1009670:CDS | 30.0% |
| TGAAATGAAATGATTTCCCA+TGG | - | chr7_1:11489889-11489908 | None:intergenic | 30.0% | |
| ATGGGAAATCATTTCATTTC+AGG | + | chr7_1:11489888-11489907 | Msa1009670:CDS | 30.0% | |
| ACAATTAAGCAGTTGAGAAA+TGG | - | chr7_1:11489915-11489934 | None:intergenic | 30.0% | |
| TTGGGTGTTAAGTACTTTAT+AGG | + | chr7_1:11490152-11490171 | Msa1009670:intron | 30.0% | |
| TGAGATGGTCATGATTTAAT+TGG | - | chr7_1:11490393-11490412 | None:intergenic | 30.0% | |
| !! | GAAAGCTATGTTTTAAACAC+TGG | - | chr7_1:11490433-11490452 | None:intergenic | 30.0% |
| ! | GTGTTTAAAACATAGCTTTC+AGG | + | chr7_1:11490433-11490452 | Msa1009670:intron | 30.0% |
| !! | TTGACTTGTTTCTTGAATCT+TGG | - | chr7_1:11490573-11490592 | None:intergenic | 30.0% |
| AAACATGTGAAGAGAATCAA+AGG | + | chr7_1:11490642-11490661 | Msa1009670:CDS | 30.0% | |
| CACCTAAAATCAAGAAAACA+AGG | + | chr7_1:11490738-11490757 | Msa1009670:CDS | 30.0% | |
| !!! | GTCCTTGTTTTCTTGATTTT+AGG | - | chr7_1:11490743-11490762 | None:intergenic | 30.0% |
| ! | CATAGATTTGGTTGTTTAAG+TGG | - | chr7_1:11490801-11490820 | None:intergenic | 30.0% |
| !!! | GGTTTTTGGTTACATAGATT+TGG | - | chr7_1:11490813-11490832 | None:intergenic | 30.0% |
| !! | TTTGATCAACACTTGGTTTT+TGG | - | chr7_1:11490827-11490846 | None:intergenic | 30.0% |
| !!! | TTTGTGTTTTGATCAACACT+TGG | - | chr7_1:11490834-11490853 | None:intergenic | 30.0% |
| !! | AAAGAAGGATCAATTTTTGG+AGG | - | chr7_1:11490891-11490910 | None:intergenic | 30.0% |
| ! | GGAAAAGAAGGATCAATTTT+TGG | - | chr7_1:11490894-11490913 | None:intergenic | 30.0% |
| !! | AATGGATTATTAGGGACTAA+TGG | - | chr7_1:11491164-11491183 | None:intergenic | 30.0% |
| !! | GTGGTTGTAATGGATTATTA+GGG | - | chr7_1:11491172-11491191 | None:intergenic | 30.0% |
| !! | TGAAATGGATTAGGAATAGT+TGG | - | chr7_1:11491203-11491222 | None:intergenic | 30.0% |
| ! | ATTGTTGGATGAAATGGATT+AGG | - | chr7_1:11491335-11491354 | None:intergenic | 30.0% |
| TGATGTAATAGAGGAATTGT+TGG | - | chr7_1:11491350-11491369 | None:intergenic | 30.0% | |
| GGAAGAATTTGATGTAATAG+AGG | - | chr7_1:11491359-11491378 | None:intergenic | 30.0% | |
| !! | TGAAATGGATTAGGAATTGT+TGG | - | chr7_1:11491575-11491594 | None:intergenic | 30.0% |
| !! | AATGGATTATTAGGGACTAA+TGG | - | chr7_1:11491164-11491183 | None:intergenic | 30.0% |
| ATATTGTAGACCCTTTGTAA+GGG | + | chr7_1:11489708-11489727 | Msa1009670:five_prime_UTR | 30.0% | |
| CAATCAGAAACAGTATTACA+AGG | - | chr7_1:11489758-11489777 | None:intergenic | 30.0% | |
| !! | CTGTTTCTGATTGTAACATT+TGG | + | chr7_1:11489765-11489784 | Msa1009670:CDS | 30.0% |
| ! | AACATTTGGTACATTTTCTG+AGG | + | chr7_1:11489779-11489798 | Msa1009670:CDS | 30.0% |
| TGAAATGAAATGATTTCCCA+TGG | - | chr7_1:11489889-11489908 | None:intergenic | 30.0% | |
| ATGGGAAATCATTTCATTTC+AGG | + | chr7_1:11489888-11489907 | Msa1009670:CDS | 30.0% | |
| ACAATTAAGCAGTTGAGAAA+TGG | - | chr7_1:11489915-11489934 | None:intergenic | 30.0% | |
| TTGGGTGTTAAGTACTTTAT+AGG | + | chr7_1:11490152-11490171 | Msa1009670:intron | 30.0% | |
| TGAGATGGTCATGATTTAAT+TGG | - | chr7_1:11490393-11490412 | None:intergenic | 30.0% | |
| !! | GAAAGCTATGTTTTAAACAC+TGG | - | chr7_1:11490433-11490452 | None:intergenic | 30.0% |
| ! | GTGTTTAAAACATAGCTTTC+AGG | + | chr7_1:11490433-11490452 | Msa1009670:intron | 30.0% |
| !! | TTGACTTGTTTCTTGAATCT+TGG | - | chr7_1:11490573-11490592 | None:intergenic | 30.0% |
| AAACATGTGAAGAGAATCAA+AGG | + | chr7_1:11490642-11490661 | Msa1009670:CDS | 30.0% | |
| CACCTAAAATCAAGAAAACA+AGG | + | chr7_1:11490738-11490757 | Msa1009670:CDS | 30.0% | |
| !!! | GTCCTTGTTTTCTTGATTTT+AGG | - | chr7_1:11490743-11490762 | None:intergenic | 30.0% |
| ! | CATAGATTTGGTTGTTTAAG+TGG | - | chr7_1:11490801-11490820 | None:intergenic | 30.0% |
| !!! | GGTTTTTGGTTACATAGATT+TGG | - | chr7_1:11490813-11490832 | None:intergenic | 30.0% |
| !! | TTTGATCAACACTTGGTTTT+TGG | - | chr7_1:11490827-11490846 | None:intergenic | 30.0% |
| !!! | TTTGTGTTTTGATCAACACT+TGG | - | chr7_1:11490834-11490853 | None:intergenic | 30.0% |
| !! | AAAGAAGGATCAATTTTTGG+AGG | - | chr7_1:11490891-11490910 | None:intergenic | 30.0% |
| ! | GGAAAAGAAGGATCAATTTT+TGG | - | chr7_1:11490894-11490913 | None:intergenic | 30.0% |
| !! | AATGGATTATTAGGGACTAA+TGG | - | chr7_1:11491164-11491183 | None:intergenic | 30.0% |
| !! | GTGGTTGTAATGGATTATTA+GGG | - | chr7_1:11491172-11491191 | None:intergenic | 30.0% |
| !! | TGAAATGGATTAGGAATAGT+TGG | - | chr7_1:11491203-11491222 | None:intergenic | 30.0% |
| ! | ATTGTTGGATGAAATGGATT+AGG | - | chr7_1:11491335-11491354 | None:intergenic | 30.0% |
| TGATGTAATAGAGGAATTGT+TGG | - | chr7_1:11491350-11491369 | None:intergenic | 30.0% | |
| GGAAGAATTTGATGTAATAG+AGG | - | chr7_1:11491359-11491378 | None:intergenic | 30.0% | |
| !! | TGAAATGGATTAGGAATTGT+TGG | - | chr7_1:11491575-11491594 | None:intergenic | 30.0% |
| !! | AATGGATTATTAGGGACTAA+TGG | - | chr7_1:11491164-11491183 | None:intergenic | 30.0% |
| GATATTGTAGACCCTTTGTA+AGG | + | chr7_1:11489707-11489726 | Msa1009670:five_prime_UTR | 35.0% | |
| TATTGTAGACCCTTTGTAAG+GGG | + | chr7_1:11489709-11489728 | Msa1009670:five_prime_UTR | 35.0% | |
| ! | TTGTGACACATGTTTTCAAC+AGG | + | chr7_1:11489857-11489876 | Msa1009670:CDS | 35.0% |
| ! | TTTTCAACAGGATTTCTCCA+TGG | + | chr7_1:11489869-11489888 | Msa1009670:CDS | 35.0% |
| TTTCAACAGGATTTCTCCAT+GGG | + | chr7_1:11489870-11489889 | Msa1009670:CDS | 35.0% | |
| ! | CTTCAGATTGAAAGTGTGTT+TGG | + | chr7_1:11490048-11490067 | Msa1009670:intron | 35.0% |
| CAAACTAGTCAGCTCTTAAA+TGG | - | chr7_1:11490229-11490248 | None:intergenic | 35.0% | |
| GTAATCGAGATCAAACTAAC+CGG | - | chr7_1:11490252-11490271 | None:intergenic | 35.0% | |
| AACTAGTCAGCTCTCTTAAT+TGG | - | chr7_1:11490305-11490324 | None:intergenic | 35.0% | |
| GTAATCGAGATTAAACCAAC+CGG | - | chr7_1:11490330-11490349 | None:intergenic | 35.0% | |
| GTTGAAGTAGAATGCAAAGA+TGG | + | chr7_1:11490531-11490550 | Msa1009670:CDS | 35.0% | |
| CAAGTCAAAACAAATGAGCA+TGG | + | chr7_1:11490585-11490604 | Msa1009670:CDS | 35.0% | |
| ! | GTAAGAATTTCAGGTGCTAA+AGG | - | chr7_1:11490975-11490994 | None:intergenic | 35.0% |
| CTTCATTAGTCATTCCACTA+GGG | - | chr7_1:11491031-11491050 | None:intergenic | 35.0% | |
| TCTTCATTAGTCATTCCACT+AGG | - | chr7_1:11491032-11491051 | None:intergenic | 35.0% | |
| !! | GAGGAATGTGAAAAGTATCA+AGG | - | chr7_1:11491121-11491140 | None:intergenic | 35.0% |
| !! | GGTGGTTGTAATGGATTATT+AGG | - | chr7_1:11491173-11491192 | None:intergenic | 35.0% |
| ! | TTAGGAATAGTTGGTGTACT+TGG | - | chr7_1:11491194-11491213 | None:intergenic | 35.0% |
| TTATTAGGAACTAATGGTGG+TGG | - | chr7_1:11491227-11491246 | None:intergenic | 35.0% | |
| GGATTATTAGGAACTAATGG+TGG | - | chr7_1:11491230-11491249 | None:intergenic | 35.0% | |
| !! | GGTGGTTGTAATGGATTATT+AGG | - | chr7_1:11491173-11491192 | None:intergenic | 35.0% |
| !! | ACTAATGTTGGTGGTTGTAA+TGG | - | chr7_1:11491251-11491270 | None:intergenic | 35.0% |
| !! | GATGGATTATTAGGGACTAA+TGG | - | chr7_1:11491287-11491306 | None:intergenic | 35.0% |
| !! | GTGGTTGTGATGGATTATTA+GGG | - | chr7_1:11491295-11491314 | None:intergenic | 35.0% |
| !! | TGAAATGGATTAGGAACAAG+TGG | - | chr7_1:11491326-11491345 | None:intergenic | 35.0% |
| AGAGGAATTGTTGGATGAAA+TGG | - | chr7_1:11491341-11491360 | None:intergenic | 35.0% | |
| !! | GAAAAAATGGATTAGGAGGA+AGG | - | chr7_1:11491508-11491527 | None:intergenic | 35.0% |
| !! | ACTAATGGTGGTGGAAAAAA+TGG | - | chr7_1:11491521-11491540 | None:intergenic | 35.0% |
| TTATTAGGAACTAATGGTGG+TGG | - | chr7_1:11491227-11491246 | None:intergenic | 35.0% | |
| GGATTATTAGGAACTAATGG+TGG | - | chr7_1:11491230-11491249 | None:intergenic | 35.0% | |
| GGTGGTTGTAAAGGATTATT+AGG | - | chr7_1:11491545-11491564 | None:intergenic | 35.0% | |
| TTAGGAATTGTTGGTGTACT+TGG | - | chr7_1:11491566-11491585 | None:intergenic | 35.0% | |
| TTATTAGGGACTAATGGTGT+TGG | - | chr7_1:11491608-11491627 | None:intergenic | 35.0% | |
| !! | GTGGCTGAAATGGATTATTA+GGG | - | chr7_1:11491622-11491641 | None:intergenic | 35.0% |
| ! | TGTTCTTATGATCCCTCTTT+TGG | - | chr7_1:11489667-11489686 | None:intergenic | 35.0% |
| GATATTGTAGACCCTTTGTA+AGG | + | chr7_1:11489707-11489726 | Msa1009670:five_prime_UTR | 35.0% | |
| TATTGTAGACCCTTTGTAAG+GGG | + | chr7_1:11489709-11489728 | Msa1009670:five_prime_UTR | 35.0% | |
| ! | TTGTGACACATGTTTTCAAC+AGG | + | chr7_1:11489857-11489876 | Msa1009670:CDS | 35.0% |
| ! | TTTTCAACAGGATTTCTCCA+TGG | + | chr7_1:11489869-11489888 | Msa1009670:CDS | 35.0% |
| TTTCAACAGGATTTCTCCAT+GGG | + | chr7_1:11489870-11489889 | Msa1009670:CDS | 35.0% | |
| ! | CTTCAGATTGAAAGTGTGTT+TGG | + | chr7_1:11490048-11490067 | Msa1009670:intron | 35.0% |
| CAAACTAGTCAGCTCTTAAA+TGG | - | chr7_1:11490229-11490248 | None:intergenic | 35.0% | |
| GTAATCGAGATCAAACTAAC+CGG | - | chr7_1:11490252-11490271 | None:intergenic | 35.0% | |
| AACTAGTCAGCTCTCTTAAT+TGG | - | chr7_1:11490305-11490324 | None:intergenic | 35.0% | |
| GTAATCGAGATTAAACCAAC+CGG | - | chr7_1:11490330-11490349 | None:intergenic | 35.0% | |
| GTTGAAGTAGAATGCAAAGA+TGG | + | chr7_1:11490531-11490550 | Msa1009670:CDS | 35.0% | |
| CAAGTCAAAACAAATGAGCA+TGG | + | chr7_1:11490585-11490604 | Msa1009670:CDS | 35.0% | |
| ! | GTAAGAATTTCAGGTGCTAA+AGG | - | chr7_1:11490975-11490994 | None:intergenic | 35.0% |
| CTTCATTAGTCATTCCACTA+GGG | - | chr7_1:11491031-11491050 | None:intergenic | 35.0% | |
| TCTTCATTAGTCATTCCACT+AGG | - | chr7_1:11491032-11491051 | None:intergenic | 35.0% | |
| !! | GAGGAATGTGAAAAGTATCA+AGG | - | chr7_1:11491121-11491140 | None:intergenic | 35.0% |
| !! | GGTGGTTGTAATGGATTATT+AGG | - | chr7_1:11491173-11491192 | None:intergenic | 35.0% |
| ! | TTAGGAATAGTTGGTGTACT+TGG | - | chr7_1:11491194-11491213 | None:intergenic | 35.0% |
| TTATTAGGAACTAATGGTGG+TGG | - | chr7_1:11491227-11491246 | None:intergenic | 35.0% | |
| GGATTATTAGGAACTAATGG+TGG | - | chr7_1:11491230-11491249 | None:intergenic | 35.0% | |
| !! | GGTGGTTGTAATGGATTATT+AGG | - | chr7_1:11491173-11491192 | None:intergenic | 35.0% |
| !! | ACTAATGTTGGTGGTTGTAA+TGG | - | chr7_1:11491251-11491270 | None:intergenic | 35.0% |
| !! | GATGGATTATTAGGGACTAA+TGG | - | chr7_1:11491287-11491306 | None:intergenic | 35.0% |
| !! | GTGGTTGTGATGGATTATTA+GGG | - | chr7_1:11491295-11491314 | None:intergenic | 35.0% |
| !! | TGAAATGGATTAGGAACAAG+TGG | - | chr7_1:11491326-11491345 | None:intergenic | 35.0% |
| AGAGGAATTGTTGGATGAAA+TGG | - | chr7_1:11491341-11491360 | None:intergenic | 35.0% | |
| !! | GAAAAAATGGATTAGGAGGA+AGG | - | chr7_1:11491508-11491527 | None:intergenic | 35.0% |
| !! | ACTAATGGTGGTGGAAAAAA+TGG | - | chr7_1:11491521-11491540 | None:intergenic | 35.0% |
| TTATTAGGAACTAATGGTGG+TGG | - | chr7_1:11491227-11491246 | None:intergenic | 35.0% | |
| GGATTATTAGGAACTAATGG+TGG | - | chr7_1:11491230-11491249 | None:intergenic | 35.0% | |
| GGTGGTTGTAAAGGATTATT+AGG | - | chr7_1:11491545-11491564 | None:intergenic | 35.0% | |
| TTAGGAATTGTTGGTGTACT+TGG | - | chr7_1:11491566-11491585 | None:intergenic | 35.0% | |
| TTATTAGGGACTAATGGTGT+TGG | - | chr7_1:11491608-11491627 | None:intergenic | 35.0% | |
| !! | GTGGCTGAAATGGATTATTA+GGG | - | chr7_1:11491622-11491641 | None:intergenic | 35.0% |
| AAGGTTTGTCCCCTTACAAA+GGG | - | chr7_1:11489721-11489740 | None:intergenic | 40.0% | |
| TAAGGTTTGTCCCCTTACAA+AGG | - | chr7_1:11489722-11489741 | None:intergenic | 40.0% | |
| GGACAAACCTTAGAATGTCT+TGG | + | chr7_1:11489730-11489749 | Msa1009670:exon | 40.0% | |
| CAAGGAACCAAGACATTCTA+AGG | - | chr7_1:11489740-11489759 | None:intergenic | 40.0% | |
| !! | TTGATTTGTCACTGTCGTGT+TGG | + | chr7_1:11490133-11490152 | Msa1009670:intron | 40.0% |
| ! | TGATTTGTCACTGTCGTGTT+GGG | + | chr7_1:11490134-11490153 | Msa1009670:intron | 40.0% |
| !! | TTAAGAGCTGACTAGTTTGC+CGG | + | chr7_1:11490230-11490249 | Msa1009670:intron | 40.0% |
| ! | CTCTCTTAATTGGTTCAACC+GGG | - | chr7_1:11490295-11490314 | None:intergenic | 40.0% |
| ! | GCTCTCTTAATTGGTTCAAC+CGG | - | chr7_1:11490296-11490315 | None:intergenic | 40.0% |
| ACATGTTTGCTCACTGAGAA+TGG | - | chr7_1:11490630-11490649 | None:intergenic | 40.0% | |
| GCTGAGGCTATAGAACAAAA+TGG | - | chr7_1:11490699-11490718 | None:intergenic | 40.0% | |
| TAGGTGAAGTGATGAAGATG+AGG | - | chr7_1:11490724-11490743 | None:intergenic | 40.0% | |
| !!! | GGACTACACATTTTTTCAGC+AGG | + | chr7_1:11490759-11490778 | Msa1009670:CDS | 40.0% |
| ! | ATTTCAGGTGCTAAAGGAAC+TGG | - | chr7_1:11490969-11490988 | None:intergenic | 40.0% |
| GACAATTCTGGTGGCAATAT+TGG | - | chr7_1:11490999-11491018 | None:intergenic | 40.0% | |
| ATTAGTGGTGACAATTCTGG+TGG | - | chr7_1:11491008-11491027 | None:intergenic | 40.0% | |
| !! | ACTAATGGTGGTGGGAAAAA+TGG | - | chr7_1:11491149-11491168 | None:intergenic | 40.0% |
| TATTAGGGACTAATGGTGGT+GGG | - | chr7_1:11491157-11491176 | None:intergenic | 40.0% | |
| TTATTAGGGACTAATGGTGG+TGG | - | chr7_1:11491158-11491177 | None:intergenic | 40.0% | |
| GGATTATTAGGGACTAATGG+TGG | - | chr7_1:11491161-11491180 | None:intergenic | 40.0% | |
| !! | ACTAATGGTGGTGGTTGAAA+TGG | - | chr7_1:11491218-11491237 | None:intergenic | 40.0% |
| TTATTAGGGACTAATGGTGG+TGG | - | chr7_1:11491158-11491177 | None:intergenic | 40.0% | |
| GGATTATTAGGGACTAATGG+TGG | - | chr7_1:11491161-11491180 | None:intergenic | 40.0% | |
| !! | GGTGGTTGTGATGGATTATT+AGG | - | chr7_1:11491296-11491315 | None:intergenic | 40.0% |
| TTAGGAACAAGTGGTGTACT+TGG | - | chr7_1:11491317-11491336 | None:intergenic | 40.0% | |
| ACTAGTGGTGACAATATTGG+TGG | - | chr7_1:11491380-11491399 | None:intergenic | 40.0% | |
| GAGGAAGGTTAAAGGAATCA+AGG | - | chr7_1:11491493-11491512 | None:intergenic | 40.0% | |
| ! | TGGATTAGGAGGAAGGTTAA+AGG | - | chr7_1:11491501-11491520 | None:intergenic | 40.0% |
| !! | GGTGGAAAAAATGGATTAGG+AGG | - | chr7_1:11491512-11491531 | None:intergenic | 40.0% |
| !! | GGTGGTGGAAAAAATGGATT+AGG | - | chr7_1:11491515-11491534 | None:intergenic | 40.0% |
| !! | GTTGGTGGTTGAAATGGATT+AGG | - | chr7_1:11491584-11491603 | None:intergenic | 40.0% |
| !! | GGTGGCTGAAATGGATTATT+AGG | - | chr7_1:11491623-11491642 | None:intergenic | 40.0% |
| ! | AACAATGGTGATGATCCTGA+TGG | - | chr7_1:11491647-11491666 | None:intergenic | 40.0% |
| ! | ACCATTGTTTCCTTTTCCGT+CGG | + | chr7_1:11491658-11491677 | Msa1009670:CDS | 40.0% |
| AAGGTTTGTCCCCTTACAAA+GGG | - | chr7_1:11489721-11489740 | None:intergenic | 40.0% | |
| TAAGGTTTGTCCCCTTACAA+AGG | - | chr7_1:11489722-11489741 | None:intergenic | 40.0% | |
| GGACAAACCTTAGAATGTCT+TGG | + | chr7_1:11489730-11489749 | Msa1009670:exon | 40.0% | |
| CAAGGAACCAAGACATTCTA+AGG | - | chr7_1:11489740-11489759 | None:intergenic | 40.0% | |
| !! | TTGATTTGTCACTGTCGTGT+TGG | + | chr7_1:11490133-11490152 | Msa1009670:intron | 40.0% |
| ! | TGATTTGTCACTGTCGTGTT+GGG | + | chr7_1:11490134-11490153 | Msa1009670:intron | 40.0% |
| !! | TTAAGAGCTGACTAGTTTGC+CGG | + | chr7_1:11490230-11490249 | Msa1009670:intron | 40.0% |
| ! | CTCTCTTAATTGGTTCAACC+GGG | - | chr7_1:11490295-11490314 | None:intergenic | 40.0% |
| ! | GCTCTCTTAATTGGTTCAAC+CGG | - | chr7_1:11490296-11490315 | None:intergenic | 40.0% |
| ACATGTTTGCTCACTGAGAA+TGG | - | chr7_1:11490630-11490649 | None:intergenic | 40.0% | |
| GCTGAGGCTATAGAACAAAA+TGG | - | chr7_1:11490699-11490718 | None:intergenic | 40.0% | |
| TAGGTGAAGTGATGAAGATG+AGG | - | chr7_1:11490724-11490743 | None:intergenic | 40.0% | |
| !!! | GGACTACACATTTTTTCAGC+AGG | + | chr7_1:11490759-11490778 | Msa1009670:CDS | 40.0% |
| ! | ATTTCAGGTGCTAAAGGAAC+TGG | - | chr7_1:11490969-11490988 | None:intergenic | 40.0% |
| GACAATTCTGGTGGCAATAT+TGG | - | chr7_1:11490999-11491018 | None:intergenic | 40.0% | |
| ATTAGTGGTGACAATTCTGG+TGG | - | chr7_1:11491008-11491027 | None:intergenic | 40.0% | |
| !! | ACTAATGGTGGTGGGAAAAA+TGG | - | chr7_1:11491149-11491168 | None:intergenic | 40.0% |
| TATTAGGGACTAATGGTGGT+GGG | - | chr7_1:11491157-11491176 | None:intergenic | 40.0% | |
| TTATTAGGGACTAATGGTGG+TGG | - | chr7_1:11491158-11491177 | None:intergenic | 40.0% | |
| GGATTATTAGGGACTAATGG+TGG | - | chr7_1:11491161-11491180 | None:intergenic | 40.0% | |
| !! | ACTAATGGTGGTGGTTGAAA+TGG | - | chr7_1:11491218-11491237 | None:intergenic | 40.0% |
| TTATTAGGGACTAATGGTGG+TGG | - | chr7_1:11491158-11491177 | None:intergenic | 40.0% | |
| GGATTATTAGGGACTAATGG+TGG | - | chr7_1:11491161-11491180 | None:intergenic | 40.0% | |
| !! | GGTGGTTGTGATGGATTATT+AGG | - | chr7_1:11491296-11491315 | None:intergenic | 40.0% |
| TTAGGAACAAGTGGTGTACT+TGG | - | chr7_1:11491317-11491336 | None:intergenic | 40.0% | |
| ACTAGTGGTGACAATATTGG+TGG | - | chr7_1:11491380-11491399 | None:intergenic | 40.0% | |
| GAGGAAGGTTAAAGGAATCA+AGG | - | chr7_1:11491493-11491512 | None:intergenic | 40.0% | |
| ! | TGGATTAGGAGGAAGGTTAA+AGG | - | chr7_1:11491501-11491520 | None:intergenic | 40.0% |
| !! | GGTGGAAAAAATGGATTAGG+AGG | - | chr7_1:11491512-11491531 | None:intergenic | 40.0% |
| !! | GGTGGTGGAAAAAATGGATT+AGG | - | chr7_1:11491515-11491534 | None:intergenic | 40.0% |
| !! | GTTGGTGGTTGAAATGGATT+AGG | - | chr7_1:11491584-11491603 | None:intergenic | 40.0% |
| !! | GGTGGCTGAAATGGATTATT+AGG | - | chr7_1:11491623-11491642 | None:intergenic | 40.0% |
| ! | AACAATGGTGATGATCCTGA+TGG | - | chr7_1:11491647-11491666 | None:intergenic | 40.0% |
| ! | ACCATTGTTTCCTTTTCCGT+CGG | + | chr7_1:11491658-11491677 | Msa1009670:CDS | 40.0% |
| TCTTAAATGGTTCGACTGGC+CGG | - | chr7_1:11490216-11490235 | None:intergenic | 45.0% | |
| CAGCTCTTAAATGGTTCGAC+TGG | - | chr7_1:11490220-11490239 | None:intergenic | 45.0% | |
| AAAAACCCTATTGAACCGCC+CGG | + | chr7_1:11490274-11490293 | Msa1009670:intron | 45.0% | |
| ! | TCTTAATTGGTTCAACCGGG+CGG | - | chr7_1:11490292-11490311 | None:intergenic | 45.0% |
| !! | AAGAGAGCTGACTAGTTTGC+CGG | + | chr7_1:11490308-11490327 | Msa1009670:intron | 45.0% |
| CGAAGATCGAATAGGTGAGA+TGG | - | chr7_1:11490408-11490427 | None:intergenic | 45.0% | |
| TGCTCACTGAGAATGGAAGT+TGG | - | chr7_1:11490623-11490642 | None:intergenic | 45.0% | |
| AAAGGAAGAACACCACTAGG+GGG | - | chr7_1:11490939-11490958 | None:intergenic | 45.0% | |
| GAAAGGAAGAACACCACTAG+GGG | - | chr7_1:11490940-11490959 | None:intergenic | 45.0% | |
| GGAAAGGAAGAACACCACTA+GGG | - | chr7_1:11490941-11490960 | None:intergenic | 45.0% | |
| AGGAAAGGAAGAACACCACT+AGG | - | chr7_1:11490942-11490961 | None:intergenic | 45.0% | |
| ! | GGGATTAGTGGTGACAATTC+TGG | - | chr7_1:11491011-11491030 | None:intergenic | 45.0% |
| TTGTCACCACTAATCCCTAG+TGG | + | chr7_1:11491014-11491033 | Msa1009670:CDS | 45.0% | |
| GTCATTCCACTAGGGATTAG+TGG | - | chr7_1:11491023-11491042 | None:intergenic | 45.0% | |
| !! | GGTGGGAAAAATGGATTAGG+AGG | - | chr7_1:11491140-11491159 | None:intergenic | 45.0% |
| !! | GGTGGTGGGAAAAATGGATT+AGG | - | chr7_1:11491143-11491162 | None:intergenic | 45.0% |
| ! | GGTGTACTTGGTGGTTGTAA+TGG | - | chr7_1:11491182-11491201 | None:intergenic | 45.0% |
| ! | GGAATAGTTGGTGTACTTGG+TGG | - | chr7_1:11491191-11491210 | None:intergenic | 45.0% |
| ! | GGTGGTGGTTGAAATGGATT+AGG | - | chr7_1:11491212-11491231 | None:intergenic | 45.0% |
| GGATTAGGGACTAATGTTGG+TGG | - | chr7_1:11491260-11491279 | None:intergenic | 45.0% | |
| !! | GGTGGATTAGGGACTAATGT+TGG | - | chr7_1:11491263-11491282 | None:intergenic | 45.0% |
| !! | GGACTAATGGTGGTGGATTA+GGG | - | chr7_1:11491274-11491293 | None:intergenic | 45.0% |
| ! | GGGACTAGTGGTGACAATAT+TGG | - | chr7_1:11491383-11491402 | None:intergenic | 45.0% |
| !! | CATCACTAGCCTTTCCACTA+GGG | - | chr7_1:11491403-11491422 | None:intergenic | 45.0% |
| !! | TCATCACTAGCCTTTCCACT+AGG | - | chr7_1:11491404-11491423 | None:intergenic | 45.0% |
| ! | GGTGTACTTGGTGGTTGTAA+AGG | - | chr7_1:11491182-11491201 | None:intergenic | 45.0% |
| GGAATTGTTGGTGTACTTGG+TGG | - | chr7_1:11491563-11491582 | None:intergenic | 45.0% | |
| !! | GTTGGAGTTGGTGGTTGAAA+TGG | - | chr7_1:11491590-11491609 | None:intergenic | 45.0% |
| ! | ACTAATGGTGTTGGAGTTGG+TGG | - | chr7_1:11491599-11491618 | None:intergenic | 45.0% |
| ! | AATGGTGATGATCCTGATGG+AGG | - | chr7_1:11491644-11491663 | None:intergenic | 45.0% |
| ACCGACGGAAAAGGAAACAA+TGG | - | chr7_1:11491662-11491681 | None:intergenic | 45.0% | |
| TCTTAAATGGTTCGACTGGC+CGG | - | chr7_1:11490216-11490235 | None:intergenic | 45.0% | |
| CAGCTCTTAAATGGTTCGAC+TGG | - | chr7_1:11490220-11490239 | None:intergenic | 45.0% | |
| AAAAACCCTATTGAACCGCC+CGG | + | chr7_1:11490274-11490293 | Msa1009670:intron | 45.0% | |
| ! | TCTTAATTGGTTCAACCGGG+CGG | - | chr7_1:11490292-11490311 | None:intergenic | 45.0% |
| !! | AAGAGAGCTGACTAGTTTGC+CGG | + | chr7_1:11490308-11490327 | Msa1009670:intron | 45.0% |
| CGAAGATCGAATAGGTGAGA+TGG | - | chr7_1:11490408-11490427 | None:intergenic | 45.0% | |
| TGCTCACTGAGAATGGAAGT+TGG | - | chr7_1:11490623-11490642 | None:intergenic | 45.0% | |
| AAAGGAAGAACACCACTAGG+GGG | - | chr7_1:11490939-11490958 | None:intergenic | 45.0% | |
| GAAAGGAAGAACACCACTAG+GGG | - | chr7_1:11490940-11490959 | None:intergenic | 45.0% | |
| GGAAAGGAAGAACACCACTA+GGG | - | chr7_1:11490941-11490960 | None:intergenic | 45.0% | |
| AGGAAAGGAAGAACACCACT+AGG | - | chr7_1:11490942-11490961 | None:intergenic | 45.0% | |
| ! | GGGATTAGTGGTGACAATTC+TGG | - | chr7_1:11491011-11491030 | None:intergenic | 45.0% |
| TTGTCACCACTAATCCCTAG+TGG | + | chr7_1:11491014-11491033 | Msa1009670:CDS | 45.0% | |
| GTCATTCCACTAGGGATTAG+TGG | - | chr7_1:11491023-11491042 | None:intergenic | 45.0% | |
| !! | GGTGGGAAAAATGGATTAGG+AGG | - | chr7_1:11491140-11491159 | None:intergenic | 45.0% |
| !! | GGTGGTGGGAAAAATGGATT+AGG | - | chr7_1:11491143-11491162 | None:intergenic | 45.0% |
| ! | GGTGTACTTGGTGGTTGTAA+TGG | - | chr7_1:11491182-11491201 | None:intergenic | 45.0% |
| ! | GGAATAGTTGGTGTACTTGG+TGG | - | chr7_1:11491191-11491210 | None:intergenic | 45.0% |
| ! | GGTGGTGGTTGAAATGGATT+AGG | - | chr7_1:11491212-11491231 | None:intergenic | 45.0% |
| GGATTAGGGACTAATGTTGG+TGG | - | chr7_1:11491260-11491279 | None:intergenic | 45.0% | |
| !! | GGTGGATTAGGGACTAATGT+TGG | - | chr7_1:11491263-11491282 | None:intergenic | 45.0% |
| !! | GGACTAATGGTGGTGGATTA+GGG | - | chr7_1:11491274-11491293 | None:intergenic | 45.0% |
| ! | GGGACTAGTGGTGACAATAT+TGG | - | chr7_1:11491383-11491402 | None:intergenic | 45.0% |
| !! | CATCACTAGCCTTTCCACTA+GGG | - | chr7_1:11491403-11491422 | None:intergenic | 45.0% |
| !! | TCATCACTAGCCTTTCCACT+AGG | - | chr7_1:11491404-11491423 | None:intergenic | 45.0% |
| ! | GGTGTACTTGGTGGTTGTAA+AGG | - | chr7_1:11491182-11491201 | None:intergenic | 45.0% |
| GGAATTGTTGGTGTACTTGG+TGG | - | chr7_1:11491563-11491582 | None:intergenic | 45.0% | |
| !! | GTTGGAGTTGGTGGTTGAAA+TGG | - | chr7_1:11491590-11491609 | None:intergenic | 45.0% |
| ! | ACTAATGGTGTTGGAGTTGG+TGG | - | chr7_1:11491599-11491618 | None:intergenic | 45.0% |
| ! | AATGGTGATGATCCTGATGG+AGG | - | chr7_1:11491644-11491663 | None:intergenic | 45.0% |
| ACCGACGGAAAAGGAAACAA+TGG | - | chr7_1:11491662-11491681 | None:intergenic | 45.0% | |
| !!! | TATTATTTTTAAATTATTAC+TGG | + | chr7_1:11490108-11490127 | Msa1009670:intron | 5.0% |
| !!! | TATTATTTTTAAATTATTAC+TGG | + | chr7_1:11490108-11490127 | Msa1009670:intron | 5.0% |
| GAAGCCTCTTTCTGCTGTTG+TGG | + | chr7_1:11489821-11489840 | Msa1009670:CDS | 50.0% | |
| CCAACCACAACAGCAGAAAG+AGG | - | chr7_1:11489828-11489847 | None:intergenic | 50.0% | |
| CCTCTTTCTGCTGTTGTGGT+TGG | + | chr7_1:11489825-11489844 | Msa1009670:CDS | 50.0% | |
| TTCAACCGGGCGGTTCAATA+GGG | - | chr7_1:11490282-11490301 | None:intergenic | 50.0% | |
| CACTGGAGCGAAGATCGAAT+AGG | - | chr7_1:11490416-11490435 | None:intergenic | 50.0% | |
| TGATGAAGATGAGGCTGCTG+AGG | - | chr7_1:11490715-11490734 | None:intergenic | 50.0% | |
| TGAAGTGGGGGTGGAAAAGA+AGG | - | chr7_1:11490906-11490925 | None:intergenic | 50.0% | |
| TTTGGATCTTGAAGTGGGGG+TGG | - | chr7_1:11490915-11490934 | None:intergenic | 50.0% | |
| GGGTTTGGATCTTGAAGTGG+GGG | - | chr7_1:11490918-11490937 | None:intergenic | 50.0% | |
| GGGGTTTGGATCTTGAAGTG+GGG | - | chr7_1:11490919-11490938 | None:intergenic | 50.0% | |
| GGGGGTTTGGATCTTGAAGT+GGG | - | chr7_1:11490920-11490939 | None:intergenic | 50.0% | |
| AAGGAAGAACACCACTAGGG+GGG | - | chr7_1:11490938-11490957 | None:intergenic | 50.0% | |
| AAAGGAACTGGTGGGAGGAA+AGG | - | chr7_1:11490957-11490976 | None:intergenic | 50.0% | |
| CAGGTGCTAAAGGAACTGGT+GGG | - | chr7_1:11490965-11490984 | None:intergenic | 50.0% | |
| TCAGGTGCTAAAGGAACTGG+TGG | - | chr7_1:11490966-11490985 | None:intergenic | 50.0% | |
| !! | GGGACTAATGGTGGTGGATT+AGG | - | chr7_1:11491275-11491294 | None:intergenic | 50.0% |
| ! | GGTGTACTTGGTGGTTGTGA+TGG | - | chr7_1:11491305-11491324 | None:intergenic | 50.0% |
| GGAACAAGTGGTGTACTTGG+TGG | - | chr7_1:11491314-11491333 | None:intergenic | 50.0% | |
| TTGTCACCACTAGTCCCTAG+TGG | + | chr7_1:11491386-11491405 | Msa1009670:CDS | 50.0% | |
| ACCACTAGTCCCTAGTGGAA+AGG | + | chr7_1:11491391-11491410 | Msa1009670:CDS | 50.0% | |
| ! | GGGACTAATGGTGTTGGAGT+TGG | - | chr7_1:11491602-11491621 | None:intergenic | 50.0% |
| GAAGCCTCTTTCTGCTGTTG+TGG | + | chr7_1:11489821-11489840 | Msa1009670:CDS | 50.0% | |
| CCAACCACAACAGCAGAAAG+AGG | - | chr7_1:11489828-11489847 | None:intergenic | 50.0% | |
| CCTCTTTCTGCTGTTGTGGT+TGG | + | chr7_1:11489825-11489844 | Msa1009670:CDS | 50.0% | |
| TTCAACCGGGCGGTTCAATA+GGG | - | chr7_1:11490282-11490301 | None:intergenic | 50.0% | |
| CACTGGAGCGAAGATCGAAT+AGG | - | chr7_1:11490416-11490435 | None:intergenic | 50.0% | |
| TGATGAAGATGAGGCTGCTG+AGG | - | chr7_1:11490715-11490734 | None:intergenic | 50.0% | |
| TGAAGTGGGGGTGGAAAAGA+AGG | - | chr7_1:11490906-11490925 | None:intergenic | 50.0% | |
| TTTGGATCTTGAAGTGGGGG+TGG | - | chr7_1:11490915-11490934 | None:intergenic | 50.0% | |
| GGGTTTGGATCTTGAAGTGG+GGG | - | chr7_1:11490918-11490937 | None:intergenic | 50.0% | |
| GGGGTTTGGATCTTGAAGTG+GGG | - | chr7_1:11490919-11490938 | None:intergenic | 50.0% | |
| GGGGGTTTGGATCTTGAAGT+GGG | - | chr7_1:11490920-11490939 | None:intergenic | 50.0% | |
| AAGGAAGAACACCACTAGGG+GGG | - | chr7_1:11490938-11490957 | None:intergenic | 50.0% | |
| AAAGGAACTGGTGGGAGGAA+AGG | - | chr7_1:11490957-11490976 | None:intergenic | 50.0% | |
| CAGGTGCTAAAGGAACTGGT+GGG | - | chr7_1:11490965-11490984 | None:intergenic | 50.0% | |
| TCAGGTGCTAAAGGAACTGG+TGG | - | chr7_1:11490966-11490985 | None:intergenic | 50.0% | |
| !! | GGGACTAATGGTGGTGGATT+AGG | - | chr7_1:11491275-11491294 | None:intergenic | 50.0% |
| ! | GGTGTACTTGGTGGTTGTGA+TGG | - | chr7_1:11491305-11491324 | None:intergenic | 50.0% |
| GGAACAAGTGGTGTACTTGG+TGG | - | chr7_1:11491314-11491333 | None:intergenic | 50.0% | |
| TTGTCACCACTAGTCCCTAG+TGG | + | chr7_1:11491386-11491405 | Msa1009670:CDS | 50.0% | |
| ACCACTAGTCCCTAGTGGAA+AGG | + | chr7_1:11491391-11491410 | Msa1009670:CDS | 50.0% | |
| ! | GGGACTAATGGTGTTGGAGT+TGG | - | chr7_1:11491602-11491621 | None:intergenic | 50.0% |
| ! | GTTCGACTGGCCGGTTCATT+TGG | - | chr7_1:11490207-11490226 | None:intergenic | 55.0% |
| GTTCAACCGGGCGGTTCAAT+AGG | - | chr7_1:11490283-11490302 | None:intergenic | 55.0% | |
| !! | GAGCTGACTAGTTTGCCGGT+TGG | + | chr7_1:11490234-11490253 | Msa1009670:intron | 55.0% |
| GGGGGGTTTGGATCTTGAAG+TGG | - | chr7_1:11490921-11490940 | None:intergenic | 55.0% | |
| CAAGATCCAAACCCCCCTAG+TGG | + | chr7_1:11490924-11490943 | Msa1009670:CDS | 55.0% | |
| AGAACACCACTAGGGGGGTT+TGG | - | chr7_1:11490933-11490952 | None:intergenic | 55.0% | |
| GTGCTAAAGGAACTGGTGGG+AGG | - | chr7_1:11490962-11490981 | None:intergenic | 55.0% | |
| GCCTTTCCACTAGGGACTAG+TGG | - | chr7_1:11491395-11491414 | None:intergenic | 55.0% | |
| CCTGATGGAGGTGGCTGAAA+TGG | - | chr7_1:11491632-11491651 | None:intergenic | 55.0% | |
| CCATTTCAGCCACCTCCATC+AGG | + | chr7_1:11491629-11491648 | Msa1009670:CDS | 55.0% | |
| GGTGATGATCCTGATGGAGG+TGG | - | chr7_1:11491641-11491660 | None:intergenic | 55.0% | |
| ! | GTTCGACTGGCCGGTTCATT+TGG | - | chr7_1:11490207-11490226 | None:intergenic | 55.0% |
| GTTCAACCGGGCGGTTCAAT+AGG | - | chr7_1:11490283-11490302 | None:intergenic | 55.0% | |
| !! | GAGCTGACTAGTTTGCCGGT+TGG | + | chr7_1:11490234-11490253 | Msa1009670:intron | 55.0% |
| GGGGGGTTTGGATCTTGAAG+TGG | - | chr7_1:11490921-11490940 | None:intergenic | 55.0% | |
| CAAGATCCAAACCCCCCTAG+TGG | + | chr7_1:11490924-11490943 | Msa1009670:CDS | 55.0% | |
| AGAACACCACTAGGGGGGTT+TGG | - | chr7_1:11490933-11490952 | None:intergenic | 55.0% | |
| GTGCTAAAGGAACTGGTGGG+AGG | - | chr7_1:11490962-11490981 | None:intergenic | 55.0% | |
| GCCTTTCCACTAGGGACTAG+TGG | - | chr7_1:11491395-11491414 | None:intergenic | 55.0% | |
| CCTGATGGAGGTGGCTGAAA+TGG | - | chr7_1:11491632-11491651 | None:intergenic | 55.0% | |
| CCATTTCAGCCACCTCCATC+AGG | + | chr7_1:11491629-11491648 | Msa1009670:CDS | 55.0% | |
| GGTGATGATCCTGATGGAGG+TGG | - | chr7_1:11491641-11491660 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 11489667 | 11491685 | 11489667 | ID=Msa1009670;Name=Msa1009670 |
| chr7_1 | mRNA | 11489667 | 11491685 | 11489667 | ID=Msa1009670-mRNA-1;Parent=Msa1009670;Name=Msa1009670-mRNA-1;_AED=0.04;_eAED=0.05;_QI=77|1|0.5|1|1|1|2|0|443 |
| chr7_1 | exon | 11489667 | 11489909 | 11489667 | ID=Msa1009670-mRNA-1:exon:3060;Parent=Msa1009670-mRNA-1 |
| chr7_1 | exon | 11490523 | 11491685 | 11490523 | ID=Msa1009670-mRNA-1:exon:3061;Parent=Msa1009670-mRNA-1 |
| chr7_1 | five_prime_UTR | 11489667 | 11489743 | 11489667 | ID=Msa1009670-mRNA-1:five_prime_utr;Parent=Msa1009670-mRNA-1 |
| chr7_1 | CDS | 11489744 | 11489909 | 11489744 | ID=Msa1009670-mRNA-1:cds;Parent=Msa1009670-mRNA-1 |
| chr7_1 | CDS | 11490523 | 11491685 | 11490523 | ID=Msa1009670-mRNA-1:cds;Parent=Msa1009670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
