AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1180410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1180410 MtrunA17_Chr8g0341001 98.310 355 6 0 40 394 1 355 0.0 714
Msa1180410 MtrunA17_Chr2g0330781 77.208 351 80 0 43 393 3 353 0.0 569
Msa1180410 MtrunA17_Chr2g0320671 62.385 327 122 1 68 394 27 352 2.59e-149 426
Msa1180410 MtrunA17_Chr4g0027521 51.368 329 158 2 68 394 24 352 1.26e-116 343
Msa1180410 MtrunA17_Chr3g0105401 42.939 347 196 2 46 391 3 348 2.01e-97 294
Msa1180410 MtrunA17_Chr1g0156931 43.314 344 186 5 47 386 15 353 3.86e-97 294
Msa1180410 MtrunA17_Chr5g0438621 42.899 338 189 2 49 386 11 344 4.29e-97 293
Msa1180410 MtrunA17_Chr5g0438641 42.105 323 186 1 69 391 30 351 1.51e-95 290
Msa1180410 MtrunA17_Chr3g0120861 43.963 323 180 1 69 391 36 357 2.22e-95 289
Msa1180410 MtrunA17_Chr5g0438631 40.816 343 194 4 47 386 7 343 9.37e-95 287
Msa1180410 MtrunA17_Chr5g0432101 44.127 315 171 4 71 382 33 345 6.89e-91 278
Msa1180410 MtrunA17_Chr4g0046151 41.543 337 186 5 49 377 15 348 1.55e-89 275
Msa1180410 MtrunA17_Chr8g0371491 41.925 322 186 1 69 390 34 354 1.07e-88 272
Msa1180410 MtrunA17_Chr5g0405821 43.492 315 175 3 69 381 41 354 1.00e-87 270
Msa1180410 MtrunA17_Chr2g0283191 38.938 339 195 6 49 377 16 352 2.55e-86 266
Msa1180410 MtrunA17_Chr8g0371471 40.379 317 188 1 70 386 40 355 3.58e-86 266
Msa1180410 MtrunA17_Chr3g0142921 40.517 348 199 4 49 390 9 354 8.21e-86 265
Msa1180410 MtrunA17_Chr1g0156921 40.841 333 188 5 49 376 18 346 2.87e-85 263
Msa1180410 MtrunA17_Chr5g0405831 39.169 337 200 3 58 390 27 362 5.23e-85 263
Msa1180410 MtrunA17_Chr8g0371481 40.252 318 188 2 70 386 40 356 8.09e-85 262
Msa1180410 MtrunA17_Chr1g0156891 38.857 350 206 4 43 386 10 357 3.43e-84 261
Msa1180410 MtrunA17_Chr3g0142941 42.038 314 180 2 69 382 45 356 5.21e-83 258
Msa1180410 MtrunA17_Chr1g0156911 40.575 313 184 2 70 382 36 346 3.03e-82 255
Msa1180410 MtrunA17_Chr1g0156901 41.325 317 184 2 66 382 45 359 3.93e-82 256
Msa1180410 MtrunA17_Chr4g0027571 50.455 220 108 1 174 393 3 221 1.45e-78 241
Msa1180410 MtrunA17_Chr5g0437421 36.677 319 192 5 70 381 31 346 9.22e-71 226
Msa1180410 MtrunA17_Chr1g0157001 38.689 305 182 4 76 379 41 341 4.02e-68 219
Msa1180410 MtrunA17_Chr7g0275021 34.366 355 222 8 40 388 1 350 3.04e-65 212
Msa1180410 MtrunA17_Chr7g0275011 34.384 349 216 8 43 388 12 350 6.38e-65 211
Msa1180410 MtrunA17_Chr7g0274991 34.493 345 212 8 51 386 8 347 3.20e-64 209
Msa1180410 MtrunA17_Chr1g0182811 34.884 344 208 7 47 385 16 348 3.85e-63 207
Msa1180410 MtrunA17_Chr1g0189901 35.737 319 196 7 71 385 31 344 6.09e-62 203
Msa1180410 MtrunA17_Chr7g0275001 33.429 347 221 7 43 386 1 340 9.67e-62 202
Msa1180410 MtrunA17_Chr8g0374101 32.958 355 228 6 40 386 6 358 1.21e-61 203
Msa1180410 MtrunA17_Chr6g0457921 33.708 356 219 9 40 388 1 346 3.37e-61 201
Msa1180410 MtrunA17_Chr2g0285061 35.088 342 208 9 46 382 10 342 1.27e-60 200
Msa1180410 MtrunA17_Chr7g0229581 58.784 148 60 1 246 393 8 154 1.31e-60 193
Msa1180410 MtrunA17_Chr5g0396511 33.230 322 194 5 74 385 49 359 7.33e-60 198
Msa1180410 MtrunA17_Chr4g0008851 33.894 357 221 9 40 388 1 350 8.29e-60 198
Msa1180410 MtrunA17_Chr8g0380041 36.311 347 204 10 49 388 10 346 4.17e-59 196
Msa1180410 MtrunA17_Chr1g0189931 33.333 342 219 7 51 388 12 348 6.53e-59 196
Msa1180410 MtrunA17_Chr3g0099161 33.967 368 223 11 27 385 51 407 8.77e-59 197
Msa1180410 MtrunA17_Chr2g0294301 34.568 324 204 6 69 388 33 352 9.61e-58 192
Msa1180410 MtrunA17_Chr1g0189891 34.384 349 211 9 51 393 9 345 2.16e-57 191
Msa1180410 MtrunA17_Chr5g0434621 34.783 345 207 11 51 388 6 339 2.73e-57 191
Msa1180410 MtrunA17_Chr3g0086641 33.728 338 212 8 50 382 17 347 4.11e-57 191
Msa1180410 MtrunA17_Chr5g0444401 33.239 352 219 9 43 386 1 344 3.64e-56 188
Msa1180410 MtrunA17_Chr4g0068441 33.148 359 220 9 42 389 4 353 3.78e-56 188
Msa1180410 MtrunA17_Chr7g0229591 45.673 208 107 2 40 245 1 204 1.47e-55 182
Msa1180410 MtrunA17_Chr3g0077571 34.706 340 207 10 45 382 9 335 5.21e-55 185
Msa1180410 MtrunA17_Chr3g0099151 32.603 365 226 12 34 385 46 403 6.43e-55 186
Msa1180410 MtrunA17_Chr3g0092131 34.659 352 207 12 43 386 1 337 1.67e-54 184
Msa1180410 MtrunA17_Chr7g0215961 31.304 345 213 8 50 388 10 336 3.25e-54 183
Msa1180410 MtrunA17_Chr4g0017431 31.700 347 227 9 40 382 1 341 3.64e-54 183
Msa1180410 MtrunA17_Chr3g0099231 32.945 343 214 11 51 385 8 342 1.17e-53 182
Msa1180410 MtrunA17_Chr4g0060811 34.796 319 193 9 75 386 31 341 1.87e-53 181
Msa1180410 MtrunA17_Chr2g0301641 34.242 330 204 7 71 393 43 366 7.99e-53 180
Msa1180410 MtrunA17_Chr3g0077581 35.093 322 195 10 69 382 34 349 2.67e-51 176
Msa1180410 MtrunA17_Chr8g0349341 34.365 323 185 11 71 382 37 343 4.22e-51 175
Msa1180410 MtrunA17_Chr8g0344931 33.435 329 199 9 71 394 37 350 2.35e-50 173
Msa1180410 MtrunA17_Chr5g0420811 35.625 320 182 12 69 382 31 332 4.93e-50 172
Msa1180410 MtrunA17_Chr4g0018571 55.844 154 67 1 240 393 25 177 6.32e-50 166
Msa1180410 MtrunA17_Chr3g0131321 31.902 326 214 6 68 388 31 353 1.88e-48 169
Msa1180410 MtrunA17_Chr8g0344941 31.412 347 223 9 46 385 17 355 2.40e-48 168
Msa1180410 MtrunA17_Chr2g0294311 29.692 357 225 7 47 386 8 355 1.17e-47 166
Msa1180410 MtrunA17_Chr8g0349321 31.722 331 205 10 71 393 37 354 3.73e-47 164
Msa1180410 MtrunA17_Chr8g0370951 30.682 352 223 13 47 385 6 349 5.74e-46 162
Msa1180410 MtrunA17_Chr6g0469521 55.039 129 57 1 239 367 25 152 1.22e-45 154
Msa1180410 MtrunA17_Chr2g0284951 34.796 319 186 11 69 382 31 332 2.46e-45 160
Msa1180410 MtrunA17_Chr1g0160011 32.021 381 221 13 36 391 5 372 2.19e-44 158
Msa1180410 MtrunA17_Chr8g0380031 32.075 318 198 8 69 383 82 384 2.82e-44 158
Msa1180410 MtrunA17_Chr3g0085231 32.659 346 207 11 49 388 10 335 7.63e-44 155
Msa1180410 MtrunA17_Chr8g0349331 32.390 318 168 8 71 382 35 311 1.25e-43 154
Msa1180410 MtrunA17_Chr8g0370981 27.930 401 235 8 41 393 14 408 5.19e-43 155
Msa1180410 MtrunA17_Chr2g0284921 30.723 332 210 8 57 382 20 337 1.74e-42 152
Msa1180410 MtrunA17_Chr3g0085881 33.642 324 185 11 69 384 31 332 3.49e-42 151
Msa1180410 MtrunA17_Chr2g0284991 33.714 350 206 14 46 385 6 339 2.99e-41 149
Msa1180410 MtrunA17_Chr8g0349301 32.975 279 164 8 71 342 37 299 3.82e-41 147
Msa1180410 MtrunA17_Chr1g0160031 31.608 367 212 13 47 388 16 368 8.76e-40 145
Msa1180410 MtrunA17_Chr7g0254461 30.871 379 221 14 43 391 14 381 1.51e-38 142
Msa1180410 MtrunA17_Chr1g0159991 31.034 377 218 14 36 385 3 364 1.93e-38 142
Msa1180410 MtrunA17_Chr2g0284941 31.322 348 196 13 46 385 6 318 5.11e-38 140
Msa1180410 MtrunA17_Chr2g0285001 31.686 344 207 14 52 382 9 337 6.08e-38 140
Msa1180410 MtrunA17_Chr4g0027581 43.709 151 62 2 261 389 41 190 1.34e-37 135
Msa1180410 MtrunA17_Chr1g0159981 29.688 384 233 13 33 389 5 378 6.55e-37 138
Msa1180410 MtrunA17_Chr2g0283481 30.179 391 224 18 27 388 5 375 3.32e-35 133
Msa1180410 MtrunA17_Chr6g0469511 53.846 117 54 0 66 182 25 141 7.32e-35 125
Msa1180410 MtrunA17_Chr1g0159971 30.448 335 199 11 71 381 47 371 1.02e-34 132
Msa1180410 MtrunA17_Chr1g0160101 30.226 354 198 12 70 391 41 377 3.03e-33 128
Msa1180410 MtrunA17_Chr8g0381581 26.873 387 235 13 33 386 1 372 9.28e-33 127
Msa1180410 MtrunA17_Chr3g0104821 28.235 340 218 9 71 391 44 376 3.37e-32 125
Msa1180410 MtrunA17_Chr4g0027561 50.000 126 57 2 40 163 1 122 4.79e-32 118
Msa1180410 MtrunA17_Chr7g0226911 26.702 382 223 14 45 386 5 369 5.42e-32 124
Msa1180410 MtrunA17_Chr7g0226941 30.878 353 191 15 70 388 32 365 1.04e-31 124
Msa1180410 MtrunA17_Chr1g0191461 29.443 377 218 11 43 387 1 361 2.13e-31 122
Msa1180410 MtrunA17_Chr7g0273101 29.191 346 206 12 70 388 28 361 3.57e-31 122
Msa1180410 MtrunA17_Chr8g0370961 27.391 230 162 2 165 394 11 235 3.30e-30 116
Msa1180410 MtrunA17_Chr7g0271551 29.518 332 205 13 70 387 34 350 6.85e-30 118
Msa1180410 MtrunA17_Chr8g0347751 27.225 382 236 12 38 391 5 372 2.16e-29 117
Msa1180410 MtrunA17_Chr2g0301581 29.839 372 218 14 40 391 1 349 1.48e-28 114
Msa1180410 MtrunA17_Chr6g0450731 27.446 368 221 14 43 386 1 346 2.09e-28 114
Msa1180410 MtrunA17_Chr7g0275291 26.722 363 230 12 42 381 6 355 3.90e-28 114
Msa1180410 MtrunA17_Chr2g0283511 29.254 335 202 15 76 386 36 359 5.49e-28 113
Msa1180410 MtrunA17_Chr6g0459921 32.432 222 138 8 169 384 127 342 7.16e-28 112
Msa1180410 MtrunA17_Chr6g0450721 26.374 364 231 12 46 391 5 349 1.82e-27 111
Msa1180410 MtrunA17_Chr0c01g0489581 28.889 360 213 15 48 386 5 342 4.00e-27 110
Msa1180410 MtrunA17_Chr6g0450711 27.049 366 232 10 43 386 94 446 4.62e-27 112
Msa1180410 MtrunA17_Chr2g0301541 29.301 372 220 14 40 391 1 349 4.69e-27 110
Msa1180410 MtrunA17_Chr2g0283501 29.619 341 202 13 71 386 31 358 6.53e-27 110
Msa1180410 MtrunA17_Chr2g0317261 28.011 357 220 13 48 386 5 342 9.22e-27 109
Msa1180410 MtrunA17_Chr2g0317271 27.557 352 212 13 58 386 11 342 1.41e-26 109
Msa1180410 MtrunA17_Chr0c01g0489571 28.889 360 213 15 48 386 5 342 2.27e-26 108
Msa1180410 MtrunA17_Chr6g0455661 31.081 222 143 7 168 384 237 453 2.43e-26 110
Msa1180410 MtrunA17_Chr6g0455661 51.111 90 40 3 68 157 28 113 2.15e-17 83.6
Msa1180410 MtrunA17_Chr3g0112821 28.698 338 211 13 71 391 30 354 3.69e-26 108
Msa1180410 MtrunA17_Chr3g0093031 27.989 368 228 14 50 391 3 359 4.59e-26 107
Msa1180410 MtrunA17_Chr7g0226931 24.932 365 216 12 71 391 38 388 4.43e-25 105
Msa1180410 MtrunA17_Chr8g0352901 25.676 370 239 12 48 391 3 362 3.07e-24 102
Msa1180410 MtrunA17_Chr5g0440501 29.596 223 142 7 171 383 11 228 3.14e-24 100
Msa1180410 MtrunA17_Chr2g0283531 28.696 345 211 14 71 392 31 363 1.05e-23 101
Msa1180410 MtrunA17_Chr6g0450701 26.316 342 211 11 70 386 38 363 2.16e-23 100
Msa1180410 MtrunA17_Chr4g0057991 25.816 337 212 11 72 386 40 360 9.60e-22 95.9
Msa1180410 MtrunA17_Chr3g0096551 26.562 384 224 15 50 391 3 370 4.66e-21 94.0
Msa1180410 MtrunA17_Chr7g0266061 25.994 327 212 12 68 385 39 344 7.29e-21 92.8
Msa1180410 MtrunA17_Chr3g0112691 26.957 345 211 12 71 391 30 357 1.10e-20 92.8
Msa1180410 MtrunA17_Chr1g0189921 39.844 128 67 2 51 169 11 137 3.21e-20 86.7
Msa1180410 MtrunA17_Chr2g0301571 29.066 289 167 11 121 391 37 305 2.62e-19 87.8
Msa1180410 MtrunA17_Chr1g0178941 27.988 343 184 13 72 385 41 349 2.64e-19 88.6
Msa1180410 MtrunA17_Chr2g0321991 50.000 90 43 2 69 157 31 119 7.30e-19 82.0
Msa1180410 MtrunA17_Chr2g0301551 29.066 289 167 11 121 391 37 305 1.32e-18 85.9
Msa1180410 MtrunA17_Chr1g0198351 26.582 316 194 13 72 375 44 333 2.74e-18 85.5
Msa1180410 MtrunA17_Chr1g0198381 26.032 315 198 13 72 375 3 293 6.21e-18 84.0
Msa1180410 MtrunA17_Chr8g0339251 26.073 303 202 9 48 341 3 292 9.35e-18 83.6
Msa1180410 MtrunA17_Chr3g0104831 25.461 271 176 8 141 391 31 295 1.48e-17 82.8
Msa1180410 MtrunA17_Chr2g0301591 31.410 312 163 16 40 329 1 283 1.76e-17 82.0
Msa1180410 MtrunA17_Chr1g0178931 25.360 347 196 12 72 393 38 346 9.73e-17 80.9
Msa1180410 MtrunA17_Chr4g0018561 57.895 57 24 0 65 121 24 80 1.23e-16 75.1
Msa1180410 MtrunA17_Chr6g0463261 34.677 124 81 0 121 244 1 124 1.57e-16 75.5
Msa1180410 MtrunA17_Chr5g0432081 57.143 56 22 2 330 385 10 63 1.08e-13 66.2
Msa1180410 MtrunA17_Chr8g0370971 41.304 92 50 1 70 157 37 128 2.20e-13 67.8
Msa1180410 MtrunA17_Chr3g0104801 31.646 158 95 4 55 205 28 179 1.21e-11 63.2
Msa1180410 MtrunA17_Chr2g0308201 45.000 80 42 2 46 124 9 87 2.27e-11 60.1
Msa1180410 MtrunA17_Chr2g0283541 26.347 167 114 3 235 392 123 289 3.05e-11 63.9
Msa1180410 MtrunA17_Chr1g0198401 26.994 163 107 7 223 375 92 252 3.52e-11 63.5
Msa1180410 MtrunA17_Chr2g0301561 29.204 226 136 8 121 330 37 254 6.57e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1180410 AT3G16370.1 75.904 332 78 1 62 393 23 352 0.0 527
Msa1180410 AT5G22810.1 60.303 330 127 2 68 394 31 359 4.33e-147 421
Msa1180410 AT5G03820.2 55.080 374 163 4 23 394 15 385 2.96e-143 412
Msa1180410 AT5G03810.1 57.020 349 147 3 47 394 7 353 5.70e-143 410
Msa1180410 AT5G03820.1 55.989 359 153 4 38 394 2 357 7.63e-141 405
Msa1180410 AT3G53100.1 51.695 354 167 3 40 393 1 350 1.93e-130 379
Msa1180410 AT5G42170.1 45.625 320 166 3 69 386 48 361 4.27e-100 302
Msa1180410 AT2G04570.1 42.120 349 197 3 40 388 1 344 7.18e-99 298
Msa1180410 AT2G42990.1 41.956 317 183 1 69 385 26 341 2.03e-93 284
Msa1180410 AT3G14820.1 43.789 322 172 5 67 386 28 342 7.28e-93 283
Msa1180410 AT5G45960.1 44.551 312 166 4 69 375 45 354 7.94e-93 283
Msa1180410 AT1G75880.2 44.099 322 179 1 65 386 46 366 4.17e-91 279
Msa1180410 AT1G75900.1 41.124 338 197 2 49 386 21 356 8.11e-91 278
Msa1180410 AT1G75880.1 43.963 323 179 2 65 386 46 367 2.11e-89 275
Msa1180410 AT1G20120.1 42.547 322 184 1 65 386 72 392 2.77e-89 275
Msa1180410 AT1G59406.1 41.642 341 187 6 49 386 10 341 1.19e-88 272
Msa1180410 AT1G59030.1 41.642 341 187 6 49 386 10 341 1.19e-88 272
Msa1180410 AT1G58725.1 41.642 341 187 6 49 386 10 341 1.19e-88 272
Msa1180410 AT1G06990.1 40.062 322 189 3 67 386 33 352 2.46e-88 271
Msa1180410 AT2G30310.1 40.751 346 190 8 52 390 16 353 9.43e-88 270
Msa1180410 AT1G75890.3 37.405 393 224 5 6 382 1 387 1.06e-87 271
Msa1180410 AT1G75890.2 42.675 314 178 2 70 382 46 358 5.08e-87 268
Msa1180410 AT4G26790.1 39.329 328 192 2 59 386 23 343 6.68e-87 268
Msa1180410 AT4G26790.2 39.329 328 192 2 59 386 23 343 6.68e-87 268
Msa1180410 AT2G30220.1 40.336 357 197 8 43 390 3 352 1.31e-86 267
Msa1180410 AT2G40250.1 40.625 320 181 4 69 382 34 350 3.15e-86 266
Msa1180410 AT1G58430.1 39.943 348 200 7 47 387 7 352 4.18e-86 266
Msa1180410 AT2G31540.1 39.714 350 194 8 47 385 7 350 3.66e-85 263
Msa1180410 AT1G58520.3 42.368 321 168 6 69 386 28 334 9.78e-85 262
Msa1180410 AT1G58525.1 42.368 321 168 6 69 386 28 334 9.78e-85 262
Msa1180410 AT2G24560.1 39.769 347 201 6 47 387 7 351 8.79e-84 260
Msa1180410 AT1G75890.1 41.284 327 177 4 70 382 46 371 1.98e-83 259
Msa1180410 AT3G43570.1 38.682 349 175 6 40 386 1 312 4.05e-80 249
Msa1180410 AT5G63170.1 39.881 336 186 4 43 377 1 321 1.45e-79 248
Msa1180410 AT5G45950.1 38.438 320 190 5 69 388 38 350 9.05e-79 247
Msa1180410 AT1G20132.1 37.383 321 200 1 70 390 60 379 6.54e-74 235
Msa1180410 AT1G23500.1 40.308 325 179 3 63 386 27 337 1.77e-69 223
Msa1180410 AT1G20130.2 35.000 340 207 3 65 394 178 513 8.76e-69 226
Msa1180410 AT1G20130.1 35.000 340 207 3 65 394 198 533 1.65e-68 226
Msa1180410 AT1G20135.1 37.168 339 195 6 40 377 1 322 7.35e-68 218
Msa1180410 AT1G75920.2 35.838 346 209 2 43 386 1 335 5.71e-67 216
Msa1180410 AT3G43550.1 38.328 287 168 4 47 330 6 286 4.39e-66 212
Msa1180410 AT1G73610.1 36.335 322 189 3 66 386 30 336 1.05e-65 213
Msa1180410 AT2G24560.2 37.884 293 176 4 47 333 7 299 2.94e-64 208
Msa1180410 AT3G04290.1 34.286 350 221 7 43 388 1 345 8.14e-64 209
Msa1180410 AT1G75920.1 34.366 355 205 3 49 386 2 345 2.16e-62 204
Msa1180410 AT1G75910.1 34.294 347 213 4 43 386 1 335 4.78e-61 201
Msa1180410 AT1G29670.1 36.283 339 202 10 50 382 10 340 1.57e-60 200
Msa1180410 AT1G29670.2 35.655 359 215 11 32 382 58 408 3.66e-60 201
Msa1180410 AT4G10950.2 31.611 329 202 6 68 385 68 384 6.05e-60 199
Msa1180410 AT5G15720.1 37.346 324 190 9 68 384 27 344 1.01e-59 198
Msa1180410 AT2G23540.1 34.639 332 207 6 71 394 48 377 2.25e-59 197
Msa1180410 AT4G28780.1 31.897 348 229 7 47 390 6 349 8.92e-58 193
Msa1180410 AT5G33370.1 32.861 353 219 9 43 386 1 344 9.16e-58 193
Msa1180410 AT3G50400.1 33.053 357 228 7 47 394 10 364 4.11e-57 191
Msa1180410 AT4G10950.1 31.307 329 199 7 68 385 68 380 5.10e-57 192
Msa1180410 AT5G18430.1 32.399 321 212 3 71 388 28 346 9.60e-57 190
Msa1180410 AT1G75930.1 33.626 342 210 5 49 386 7 335 4.68e-56 187
Msa1180410 AT1G71691.2 37.072 321 189 10 66 382 50 361 5.45e-56 189
Msa1180410 AT5G37690.1 34.218 339 208 10 52 385 10 338 5.92e-56 188
Msa1180410 AT1G29660.1 35.220 318 196 7 69 382 30 341 9.19e-56 187
Msa1180410 AT5G08460.1 33.053 357 224 9 38 382 10 363 1.56e-55 187
Msa1180410 AT1G53920.1 34.848 330 201 9 66 389 43 364 1.06e-54 185
Msa1180410 AT1G75920.3 32.370 346 190 3 43 386 1 304 5.71e-54 181
Msa1180410 AT4G18970.1 34.268 321 202 7 66 382 23 338 6.85e-54 182
Msa1180410 AT1G71250.1 32.861 353 229 7 34 382 3 351 7.51e-54 183
Msa1180410 AT4G18970.2 34.268 321 202 7 66 382 23 338 1.96e-53 182
Msa1180410 AT1G33811.1 34.203 345 213 10 47 382 10 349 5.29e-53 181
Msa1180410 AT5G41890.1 32.861 353 213 8 48 386 15 357 1.70e-52 179
Msa1180410 AT1G75920.4 34.576 295 180 2 94 386 24 307 2.36e-52 177
Msa1180410 AT5G37690.2 33.432 338 204 10 52 385 10 330 2.58e-52 178
Msa1180410 AT5G45670.1 32.070 343 223 8 45 382 2 339 4.43e-52 178
Msa1180410 AT1G74460.1 34.375 320 193 10 75 386 27 337 1.96e-50 174
Msa1180410 AT5G55050.1 33.131 329 204 11 69 387 37 359 2.89e-49 171
Msa1180410 AT2G19060.1 35.398 339 186 15 68 393 27 345 4.48e-49 169
Msa1180410 AT2G31550.1 37.383 214 122 5 178 385 2 209 3.74e-48 163
Msa1180410 AT2G19010.2 31.909 351 211 12 40 382 28 358 1.15e-47 167
Msa1180410 AT2G19010.1 32.249 338 202 11 52 382 11 328 3.20e-47 165
Msa1180410 AT2G19050.1 33.542 319 189 11 69 382 29 329 4.40e-47 164
Msa1180410 AT5G40990.1 31.025 361 231 9 47 394 7 362 1.33e-46 164
Msa1180410 AT3G14225.1 31.532 333 216 7 71 394 37 366 1.01e-45 161
Msa1180410 AT1G53940.2 31.063 367 232 9 44 394 3 364 1.24e-45 161
Msa1180410 AT3G14225.2 32.024 331 213 8 71 394 37 362 3.24e-45 160
Msa1180410 AT5G15720.2 37.037 270 159 7 68 330 27 292 9.48e-45 157
Msa1180410 AT1G71120.1 32.609 322 201 8 69 385 29 339 1.46e-44 158
Msa1180410 AT5G33370.2 32.323 297 185 7 43 330 1 290 9.50e-44 155
Msa1180410 AT1G71691.3 36.431 269 160 8 66 330 50 311 2.01e-41 148
Msa1180410 AT1G53990.1 28.814 354 220 11 47 383 5 343 2.41e-38 142
Msa1180410 AT4G16230.1 36.199 221 133 4 69 284 28 245 9.86e-38 137
Msa1180410 AT2G19050.2 33.200 250 156 7 69 316 29 269 2.84e-37 136
Msa1180410 AT5G15720.3 32.567 261 166 7 131 384 56 313 4.92e-36 134
Msa1180410 AT5G14450.1 28.346 381 228 12 36 386 6 371 5.83e-36 135
Msa1180410 AT3G05180.1 30.447 358 204 11 61 388 26 368 4.94e-35 133
Msa1180410 AT4G30140.1 28.000 325 213 9 70 391 32 338 6.22e-35 132
Msa1180410 AT1G71691.1 33.071 254 159 8 133 382 14 260 4.48e-34 128
Msa1180410 AT1G54790.3 27.128 376 235 11 40 388 1 364 6.16e-34 130
Msa1180410 AT1G53940.1 30.769 299 191 7 44 330 3 297 8.29e-34 128
Msa1180410 AT1G28580.1 29.700 367 220 14 48 392 20 370 9.14e-34 130
Msa1180410 AT1G28610.2 30.495 364 208 14 48 386 14 357 2.80e-33 128
Msa1180410 AT1G28570.1 29.521 376 233 13 40 392 1 367 4.36e-33 128
Msa1180410 AT1G09390.1 28.228 333 210 10 70 387 36 354 1.25e-32 126
Msa1180410 AT2G27360.1 29.155 367 223 13 48 392 16 367 1.40e-32 126
Msa1180410 AT4G01130.1 28.686 373 220 13 49 391 14 370 3.21e-32 125
Msa1180410 AT2G03980.2 28.660 321 210 9 70 382 42 351 4.26e-32 125
Msa1180410 AT2G03980.3 28.660 321 210 9 70 382 42 351 4.26e-32 125
Msa1180410 AT2G03980.1 28.660 321 210 9 70 382 42 351 4.26e-32 125
Msa1180410 AT2G03980.4 28.660 321 210 9 70 382 42 351 4.26e-32 125
Msa1180410 AT1G28650.1 28.333 360 230 12 49 388 15 366 7.06e-32 124
Msa1180410 AT1G28640.1 28.297 364 231 12 49 391 13 367 7.38e-32 124
Msa1180410 AT1G67830.1 28.367 349 213 11 64 385 23 361 7.93e-32 124
Msa1180410 AT1G56670.1 27.577 359 225 11 47 387 16 357 8.49e-32 124
Msa1180410 AT1G28600.1 28.455 369 219 15 48 391 14 362 9.52e-32 124
Msa1180410 AT3G48460.1 28.701 331 212 11 72 386 39 361 1.27e-31 124
Msa1180410 AT1G31550.2 28.841 371 217 14 48 392 19 368 5.17e-31 122
Msa1180410 AT1G54030.1 29.283 321 192 11 62 378 48 337 8.54e-30 119
Msa1180410 AT1G54020.2 27.356 329 216 9 69 393 29 338 1.52e-29 118
Msa1180410 AT3G14220.1 28.571 329 204 12 70 389 31 337 2.63e-29 117
Msa1180410 AT1G28670.1 27.147 361 234 10 49 388 13 365 1.30e-28 115
Msa1180410 AT1G28590.1 28.610 374 225 14 47 392 10 369 1.34e-28 115
Msa1180410 AT1G54010.1 26.519 362 238 9 41 393 4 346 2.18e-28 115
Msa1180410 AT3G62280.1 28.358 335 205 11 70 387 35 351 7.41e-28 113
Msa1180410 AT1G31550.1 28.108 370 218 14 48 392 19 365 9.38e-28 113
Msa1180410 AT1G28660.1 27.424 361 232 11 49 388 13 364 2.22e-27 112
Msa1180410 AT1G54000.1 26.124 356 234 11 47 393 11 346 1.13e-26 110
Msa1180410 AT1G28660.2 27.424 361 231 12 49 388 13 363 2.91e-26 108
Msa1180410 AT3G26430.1 28.261 368 219 14 43 378 1 355 4.64e-26 108
Msa1180410 AT1G54790.1 25.886 367 231 12 49 388 11 363 7.12e-26 108
Msa1180410 AT3G27950.1 26.415 371 235 13 45 391 4 360 3.22e-25 105
Msa1180410 AT2G04020.1 33.831 201 122 6 70 266 42 235 9.08e-25 102
Msa1180410 AT2G04020.2 33.831 201 122 6 70 266 42 235 1.66e-24 103
Msa1180410 AT4G01130.3 26.644 289 173 9 135 391 3 284 4.88e-22 95.5
Msa1180410 AT5G45910.1 26.724 348 224 12 71 394 30 370 3.15e-21 94.7
Msa1180410 AT5G03610.1 26.266 316 200 10 72 375 44 338 6.44e-21 93.6
Msa1180410 AT1G54790.2 24.173 393 231 13 49 388 11 389 7.10e-21 94.0
Msa1180410 AT3G09930.2 27.848 316 196 12 72 375 40 335 8.28e-21 93.2
Msa1180410 AT3G09930.1 27.848 316 196 12 72 375 40 335 8.28e-21 93.2
Msa1180410 AT1G56670.2 28.094 299 183 10 47 330 16 297 8.84e-21 92.0
Msa1180410 AT3G14210.1 27.711 332 202 14 71 388 36 343 1.29e-20 93.2
Msa1180410 AT1G28580.2 27.148 291 184 11 121 392 8 289 1.47e-20 91.7
Msa1180410 AT1G54030.2 30.116 259 150 9 62 316 48 279 2.71e-20 90.9
Msa1180410 AT4G16220.1 42.373 118 64 2 40 157 1 114 1.59e-18 84.7
Msa1180410 AT5G03600.1 26.498 317 200 13 69 377 12 303 2.69e-18 85.5
Msa1180410 AT5G03600.2 26.498 317 200 13 69 377 47 338 2.96e-18 85.9
Msa1180410 AT1G54020.1 25.194 258 175 6 126 382 1 241 3.79e-17 81.6
Msa1180410 AT1G54020.5 25.194 258 175 6 126 382 1 241 3.79e-17 81.6
Msa1180410 AT1G54020.3 25.194 258 175 6 126 382 1 241 3.79e-17 81.6
Msa1180410 AT3G62280.2 28.736 261 154 10 70 316 35 277 6.67e-17 80.9
Msa1180410 AT1G54020.4 27.419 186 131 3 198 382 10 192 8.61e-17 79.7
Msa1180410 AT4G16233.1 32.727 110 73 1 279 388 6 114 4.04e-15 72.0
Msa1180410 AT5G03980.1 26.667 225 148 7 170 385 94 310 6.65e-15 75.5
Msa1180410 AT1G28570.3 24.762 210 138 6 197 392 1 204 6.06e-14 71.2
Msa1180410 AT1G28570.2 24.645 211 139 6 196 392 91 295 1.73e-13 71.2
Msa1180410 AT3G14210.2 26.316 228 147 8 169 388 1 215 8.60e-12 65.5
Msa1180410 AT1G28600.2 29.858 211 113 12 48 243 14 204 2.38e-11 63.5
Msa1180410 AT1G28610.1 32.086 187 96 10 48 219 14 184 2.87e-11 63.9

Find 80 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAGTTCCTAGTGATTT+TGG 0.126371 8_1:-14384816 None:intergenic
CCTGCTGCAAGGACTTTATT+TGG 0.195553 8_1:+14384316 Msa1180410:CDS
CTCATTCACAAGCTTTATTA+AGG 0.218846 8_1:+14384087 Msa1180410:CDS
TATTCTAACTGTTGGGATAA+TGG 0.256406 8_1:-14383884 None:intergenic
GTTCAAAACCCTTCCAATTT+CGG 0.294729 8_1:+14384487 Msa1180410:CDS
AAAGTGGTGCGTACCGAAAT+TGG 0.301968 8_1:-14384500 None:intergenic
GGCAAGTTGGCTCAGGTTGC+TGG 0.317149 8_1:+14383923 Msa1180410:CDS
AACAGAGTTTATATGAAGTT+TGG 0.323085 8_1:-14385085 None:intergenic
ATGCAACTCAGTATGTGTTT+TGG 0.323360 8_1:+14384841 Msa1180410:CDS
GGATTAGGAGCTAGGAAAAT+TGG 0.330733 8_1:+14384262 Msa1180410:CDS
CAGTGTATGCTCAGTATATA+TGG 0.344117 8_1:-14382370 None:intergenic
AACTTTGCTTCAGCTGCATC+TGG 0.352556 8_1:+14383236 Msa1180410:CDS
TCAGGTTGCTGGCAGTAAAA+AGG 0.357625 8_1:+14383934 Msa1180410:CDS
AAGGCTAATTACCCTCCTTA+TGG 0.370041 8_1:+14382582 Msa1180410:CDS
ATGCAGGGCGTGTATGGATT+AGG 0.377710 8_1:+14384247 Msa1180410:intron
AGCTTGTGAATGAGTCTAAC+AGG 0.386460 8_1:-14384078 None:intergenic
TCAGGGAAGAACCTCCTTCT+TGG 0.388520 8_1:+14383209 Msa1180410:CDS
AATCTTCAAAAGCAACTTCC+TGG 0.397330 8_1:+14384418 Msa1180410:CDS
TATCTTAGTCCACAGGCATC+AGG 0.401048 8_1:+14383191 Msa1180410:CDS
CCTTGAAATATTCTAACTGT+TGG 0.403529 8_1:-14383892 None:intergenic
GTACCTGCTATCATAACATT+TGG 0.409388 8_1:+14382510 Msa1180410:CDS
CTTGAAATATTCTAACTGTT+GGG 0.411275 8_1:-14383891 None:intergenic
GGGAAAGGGTGCTGTGGTAC+AGG 0.417817 8_1:+14384762 Msa1180410:CDS
GTGCAAAGCTACCACAAGTT+AGG 0.425459 8_1:-14382476 None:intergenic
GTGACCTCACTTCCACCATT+GGG 0.427280 8_1:+14384286 Msa1180410:CDS
AGTGACCTCACTTCCACCAT+TGG 0.432684 8_1:+14384285 Msa1180410:CDS
TTAGTAAAATCTCTACCATA+AGG 0.435286 8_1:-14382597 None:intergenic
CCAACAGTTAGAATATTTCA+AGG 0.438731 8_1:+14383892 Msa1180410:CDS
CCATGATTGCATTTCATATG+TGG 0.438969 8_1:-14385190 None:intergenic
AAAATTATTATACCAATCCT+TGG 0.441731 8_1:+14384017 Msa1180410:CDS
GTTGAAATGCAGGGCGTGTA+TGG 0.454217 8_1:+14384241 Msa1180410:intron
CCGAAAATGACACGTATTGA+AGG 0.454561 8_1:-14382342 None:intergenic
TTTACTAATAAACAACCTAC+TGG 0.460660 8_1:+14382612 Msa1180410:CDS
TTATTTGGTTACCATGAGAA+TGG 0.467168 8_1:+14384331 Msa1180410:CDS
GGCATAGCTCTTATCACATA+AGG 0.479682 8_1:+14384924 Msa1180410:CDS
TCTTTGTATGTATTGAGTGC+TGG 0.485192 8_1:+14383977 Msa1180410:CDS
TGCATCTGGTTATGATGAAA+AGG 0.486563 8_1:+14383250 Msa1180410:CDS
GAATATTTCAAGGAATATCA+AGG 0.486768 8_1:+14383902 Msa1180410:CDS
GCTGATAATTTAATTACAGC+AGG 0.495139 8_1:+14384903 Msa1180410:CDS
AGGTGGTAGTTACTCATGTT+AGG 0.495273 8_1:-14382315 None:intergenic
CCACATATGAAATGCAATCA+TGG 0.498015 8_1:+14385190 Msa1180410:three_prime_UTR
CCAAATAAAGTCCTTGCAGC+AGG 0.504382 8_1:-14384316 None:intergenic
GCGTGTATGGATTAGGAGCT+AGG 0.512696 8_1:+14384254 Msa1180410:CDS
AAAGGCTGCATCTATTATCA+AGG 0.521328 8_1:+14383952 Msa1180410:CDS
TCACCAAATGTTATGATAGC+AGG 0.527350 8_1:-14382513 None:intergenic
CAAGGAATATCAAGGCAAGT+TGG 0.527876 8_1:+14383910 Msa1180410:CDS
ATATCAAGGCAAGTTGGCTC+AGG 0.531855 8_1:+14383916 Msa1180410:CDS
GCCTGTGGACTAAGATATGC+AGG 0.541888 8_1:-14383185 None:intergenic
TGCTTGGTTGATCCAAGGAT+TGG 0.542337 8_1:-14384029 None:intergenic
ACTGATCAACAGTGATTGCT+TGG 0.542659 8_1:-14384045 None:intergenic
GTGATTGCTTGGTTGATCCA+AGG 0.549428 8_1:-14384034 None:intergenic
GTATCTTGCTTCCTAACTTG+TGG 0.552323 8_1:+14382465 Msa1180410:CDS
AGGTTCTTCCCTGATGCCTG+TGG 0.556382 8_1:-14383200 None:intergenic
TGGTGCGTACCGAAATTGGA+AGG 0.567451 8_1:-14384496 None:intergenic
TGGGTTGCCTACCTGCTGCA+AGG 0.568781 8_1:+14384305 Msa1180410:CDS
AAGCAAAGTTAGCACCAAGA+AGG 0.572551 8_1:-14383223 None:intergenic
ACCTGCATATCTTAGTCCAC+AGG 0.573584 8_1:+14383184 Msa1180410:CDS
ACTTGATTAGCAGCTTCTGA+AGG 0.575330 8_1:-14384876 None:intergenic
GGTGACTCTGCAGTAGATGT+TGG 0.577481 8_1:+14382531 Msa1180410:CDS
TTGCGACACAACCATTCTCA+TGG 0.578404 8_1:-14384342 None:intergenic
GTAAAATCTCTACCATAAGG+AGG 0.579599 8_1:-14382594 None:intergenic
GAGAATAGATAAATAATGAT+CGG 0.584988 8_1:-14384948 None:intergenic
ATCTTAGTCCACAGGCATCA+GGG 0.598385 8_1:+14383192 Msa1180410:CDS
GCAGGTAGGCAACCCAATGG+TGG 0.601772 8_1:-14384298 None:intergenic
TTGTGCAATCCAAAATCACT+AGG 0.603517 8_1:+14384807 Msa1180410:CDS
CAAAGTTAGCACCAAGAAGG+AGG 0.606423 8_1:-14383220 None:intergenic
TAAAATCTCTACCATAAGGA+GGG 0.614379 8_1:-14382593 None:intergenic
CCATTGCAAAACCTCCCAGT+AGG 0.621346 8_1:-14382627 None:intergenic
TTACTAATAAACAACCTACT+GGG 0.623210 8_1:+14382613 Msa1180410:CDS
GCAACCCAATGGTGGAAGTG+AGG 0.623756 8_1:-14384290 None:intergenic
AGAATCAACACTGATGCACA+AGG 0.629785 8_1:+14384364 Msa1180410:CDS
GGTGCGTACCGAAATTGGAA+GGG 0.645311 8_1:-14384495 None:intergenic
AAAATCACAATCTTTAGACC+AGG 0.647895 8_1:-14384436 None:intergenic
CTAATAAACAACCTACTGGG+AGG 0.651293 8_1:+14382616 Msa1180410:CDS
GCAGCAGGTAGGCAACCCAA+TGG 0.651520 8_1:-14384301 None:intergenic
GAGGCAGGGAAAGGGTGCTG+TGG 0.662542 8_1:+14384756 Msa1180410:CDS
AAAATGACACGTATTGAAGG+AGG 0.671205 8_1:-14382339 None:intergenic
CACGTATTGAAGGAGGAAGG+TGG 0.679092 8_1:-14382332 None:intergenic
TGACACGTATTGAAGGAGGA+AGG 0.690350 8_1:-14382335 None:intergenic
ATAAAGTCCTTGCAGCAGGT+AGG 0.698601 8_1:-14384312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGTTTTTTTCAATTA+AGG + chr8_1:14383489-14383508 Msa1180410:intron 10.0%
!!! AATTTTCAAAAAAATTAAAG+CGG - chr8_1:14383643-14383662 None:intergenic 10.0%
!! GTTTACAATTAGTTATTAAA+TGG + chr8_1:14383724-14383743 Msa1180410:intron 15.0%
!! AGTTCAAACATAATATATAT+AGG - chr8_1:14383792-14383811 None:intergenic 15.0%
!! AAAAATTTGATATACTACTT+AGG - chr8_1:14384165-14384184 None:intergenic 15.0%
!! TAGTTGTATCCTTTATTATA+TGG + chr8_1:14382710-14382729 Msa1180410:intron 20.0%
!! TTCAAATAAATCTTAGTTGT+TGG - chr8_1:14382818-14382837 None:intergenic 20.0%
!! AACAACTAAGATTTATTTGA+AGG + chr8_1:14382817-14382836 Msa1180410:intron 20.0%
!! ACAACTAAGATTTATTTGAA+GGG + chr8_1:14382818-14382837 Msa1180410:intron 20.0%
!! AAATGTATTGTAGATTTGAT+TGG + chr8_1:14382871-14382890 Msa1180410:intron 20.0%
!!! ACTAGTTTATAAGTATGAAA+TGG + chr8_1:14383441-14383460 Msa1180410:intron 20.0%
!!! TTTTGTTATGAACTTGTTTT+TGG + chr8_1:14383835-14383854 Msa1180410:intron 20.0%
!! AAAATTATTATACCAATCCT+TGG + chr8_1:14384017-14384036 Msa1180410:CDS 20.0%
!! ACATATTTCAGTTTATCTAA+TGG - chr8_1:14384191-14384210 None:intergenic 20.0%
!! CTATATAGAACATCATAAAA+AGG - chr8_1:14384728-14384747 None:intergenic 20.0%
!!! CTTTTTATGATGTTCTATAT+AGG + chr8_1:14384726-14384745 Msa1180410:intron 20.0%
!! GAGAATAGATAAATAATGAT+CGG - chr8_1:14384951-14384970 None:intergenic 20.0%
!!! AAAATGTACTGTACTATTTT+TGG + chr8_1:14385150-14385169 Msa1180410:three_prime_UTR 20.0%
!!! TAATTAGCCTTAAAAAGAGT+AGG - chr8_1:14382573-14382592 None:intergenic 25.0%
! TTAGTAAAATCTCTACCATA+AGG - chr8_1:14382600-14382619 None:intergenic 25.0%
! TTTACTAATAAACAACCTAC+TGG + chr8_1:14382612-14382631 Msa1180410:CDS 25.0%
! TTACTAATAAACAACCTACT+GGG + chr8_1:14382613-14382632 Msa1180410:CDS 25.0%
! CAACTAAGATTTATTTGAAG+GGG + chr8_1:14382819-14382838 Msa1180410:intron 25.0%
! CATATAAGTTTCATTGATGT+TGG + chr8_1:14383116-14383135 Msa1180410:intron 25.0%
!!! GTAGAGTTTTGTAAAATTTG+CGG + chr8_1:14383414-14383433 Msa1180410:intron 25.0%
!!! TTTTTTTCAATTAAGGCTAC+AGG + chr8_1:14383496-14383515 Msa1180410:intron 25.0%
!!! TTTTTTCAATTAAGGCTACA+GGG + chr8_1:14383497-14383516 Msa1180410:intron 25.0%
! ACTATTTGAACTAAGCTATA+AGG + chr8_1:14383551-14383570 Msa1180410:intron 25.0%
! AAGCTATAAGTTCAAATATG+TGG + chr8_1:14383584-14383603 Msa1180410:intron 25.0%
! TGTTTGAACTTATATCTGTT+TGG + chr8_1:14383802-14383821 Msa1180410:intron 25.0%
! CTTGAAATATTCTAACTGTT+GGG - chr8_1:14383894-14383913 None:intergenic 25.0%
! GAATATTTCAAGGAATATCA+AGG + chr8_1:14383902-14383921 Msa1180410:CDS 25.0%
!!! CCACTTTTATCTCAAATTAA+CGG + chr8_1:14384516-14384535 Msa1180410:intron 25.0%
! TGCAATAACAAAATCAGTTT+AGG - chr8_1:14384552-14384571 None:intergenic 25.0%
! TATTATCTTGTCCTTATGTT+GGG - chr8_1:14384660-14384679 None:intergenic 25.0%
! TTATTATCTTGTCCTTATGT+TGG - chr8_1:14384661-14384680 None:intergenic 25.0%
! TCAGTAAAAATAGGAAACTT+TGG - chr8_1:14385026-14385045 None:intergenic 25.0%
! CTAGAATCATCAGTAAAAAT+AGG - chr8_1:14385035-14385054 None:intergenic 25.0%
! AACAGAGTTTATATGAAGTT+TGG - chr8_1:14385088-14385107 None:intergenic 25.0%
!!! CTATTTTTGGTAGTTTGTTT+TGG + chr8_1:14385163-14385182 Msa1180410:three_prime_UTR 25.0%
! TGTTCTTCATTTTCTGCTTT+TGG - chr8_1:14382413-14382432 None:intergenic 30.0%
TAAAATCTCTACCATAAGGA+GGG - chr8_1:14382596-14382615 None:intergenic 30.0%
!!! AAGTTAGCTACTGATTTTAC+AGG + chr8_1:14382651-14382670 Msa1180410:CDS 30.0%
CATGGAAGACCATATAATAA+AGG - chr8_1:14382722-14382741 None:intergenic 30.0%
!! TCAATGTTGGTTTAACCTAA+CGG + chr8_1:14382758-14382777 Msa1180410:intron 30.0%
TAAGATTTATTTGAAGGGGA+TGG + chr8_1:14382823-14382842 Msa1180410:intron 30.0%
ACAATACATTTCCACAAGAT+TGG - chr8_1:14382862-14382881 None:intergenic 30.0%
CTTTCTTTCTCTAAATCTAG+TGG + chr8_1:14383008-14383027 Msa1180410:intron 30.0%
CCACTATAAGCTAACTTATT+AGG - chr8_1:14383358-14383377 None:intergenic 30.0%
! CCTAATAAGTTAGCTTATAG+TGG + chr8_1:14383355-14383374 Msa1180410:intron 30.0%
!!! TGTTTTTGGTTTCTTCCTAT+TGG + chr8_1:14383849-14383868 Msa1180410:intron 30.0%
TATTCTAACTGTTGGGATAA+TGG - chr8_1:14383887-14383906 None:intergenic 30.0%
CCTTGAAATATTCTAACTGT+TGG - chr8_1:14383895-14383914 None:intergenic 30.0%
CCAACAGTTAGAATATTTCA+AGG + chr8_1:14383892-14383911 Msa1180410:CDS 30.0%
!! CTCATTCACAAGCTTTATTA+AGG + chr8_1:14384087-14384106 Msa1180410:CDS 30.0%
TCAACAAAGAACCAACATTA+GGG - chr8_1:14384226-14384245 None:intergenic 30.0%
TTCAACAAAGAACCAACATT+AGG - chr8_1:14384227-14384246 None:intergenic 30.0%
TTATTTGGTTACCATGAGAA+TGG + chr8_1:14384331-14384350 Msa1180410:CDS 30.0%
AAAATCACAATCTTTAGACC+AGG - chr8_1:14384439-14384458 None:intergenic 30.0%
! CCGTTAATTTGAGATAAAAG+TGG - chr8_1:14384519-14384538 None:intergenic 30.0%
TAATATGAACTGTCTGATCT+TGG + chr8_1:14384572-14384591 Msa1180410:intron 30.0%
CATAAGGACAAGATAATAAC+TGG + chr8_1:14384662-14384681 Msa1180410:intron 30.0%
GCTGATAATTTAATTACAGC+AGG + chr8_1:14384903-14384922 Msa1180410:CDS 30.0%
AAAATGACACGTATTGAAGG+AGG - chr8_1:14382342-14382361 None:intergenic 35.0%
!!! CCTTCAATACGTGTCATTTT+CGG + chr8_1:14382342-14382361 Msa1180410:CDS 35.0%
!!! CTTCAATACGTGTCATTTTC+GGG + chr8_1:14382343-14382362 Msa1180410:CDS 35.0%
CAGTGTATGCTCAGTATATA+TGG - chr8_1:14382373-14382392 None:intergenic 35.0%
GTACCTGCTATCATAACATT+TGG + chr8_1:14382510-14382529 Msa1180410:CDS 35.0%
TCACCAAATGTTATGATAGC+AGG - chr8_1:14382516-14382535 None:intergenic 35.0%
! CTACCTTCCTACTCTTTTTA+AGG + chr8_1:14382563-14382582 Msa1180410:CDS 35.0%
! TAGCCTTAAAAAGAGTAGGA+AGG - chr8_1:14382569-14382588 None:intergenic 35.0%
GTAAAATCTCTACCATAAGG+AGG - chr8_1:14382597-14382616 None:intergenic 35.0%
ACATTGAGATTCCAATGAAG+AGG - chr8_1:14382745-14382764 None:intergenic 35.0%
CTTCATTGGAATCTCAATGT+TGG + chr8_1:14382745-14382764 Msa1180410:intron 35.0%
GAATTGAAATATCAGCCGTT+AGG - chr8_1:14382776-14382795 None:intergenic 35.0%
TTTATTTGAAGGGGATGGAA+AGG + chr8_1:14382828-14382847 Msa1180410:intron 35.0%
CGATACATTTCCACAAGATT+TGG + chr8_1:14382912-14382931 Msa1180410:intron 35.0%
! TTCCACAAGATTTGGTTGAA+TGG + chr8_1:14382920-14382939 Msa1180410:intron 35.0%
! AAGATTTGGTTGAATGGACT+TGG + chr8_1:14382926-14382945 Msa1180410:intron 35.0%
GCGTATCTCTCTAAATGTAA+CGG - chr8_1:14382989-14383008 None:intergenic 35.0%
! GATCCTCTTCATCTGAAATA+CGG - chr8_1:14383051-14383070 None:intergenic 35.0%
TGCATCTGGTTATGATGAAA+AGG + chr8_1:14383250-14383269 Msa1180410:CDS 35.0%
GAACTAAGCTATAAGGCATA+AGG + chr8_1:14383558-14383577 Msa1180410:intron 35.0%
AGTTTCAATAAGGGTCAGTT+TGG - chr8_1:14383614-14383633 None:intergenic 35.0%
! CGGCTTGATAGTTTCAATAA+GGG - chr8_1:14383623-14383642 None:intergenic 35.0%
AGGAGAAATCAAGTTACTAG+AGG - chr8_1:14383772-14383791 None:intergenic 35.0%
AAAGGCTGCATCTATTATCA+AGG + chr8_1:14383952-14383971 Msa1180410:CDS 35.0%
TCTTTGTATGTATTGAGTGC+TGG + chr8_1:14383977-14383996 Msa1180410:CDS 35.0%
AATGCAAACAACCCTAATGT+TGG + chr8_1:14384212-14384231 Msa1180410:intron 35.0%
! TTGGTTCTTTGTTGAAATGC+AGG + chr8_1:14384231-14384250 Msa1180410:intron 35.0%
TGGTTCTTTGTTGAAATGCA+GGG + chr8_1:14384232-14384251 Msa1180410:intron 35.0%
AATCTTCAAAAGCAACTTCC+TGG + chr8_1:14384418-14384437 Msa1180410:CDS 35.0%
! TTTTGAACAAGGTCAAAGAG+AGG - chr8_1:14384475-14384494 None:intergenic 35.0%
!!! AATTGGAAGGGTTTTGAACA+AGG - chr8_1:14384486-14384505 None:intergenic 35.0%
GTTCAAAACCCTTCCAATTT+CGG + chr8_1:14384487-14384506 Msa1180410:CDS 35.0%
! AAATCAGTTTAGGATGACCT+CGG - chr8_1:14384542-14384561 None:intergenic 35.0%
!!! AATGTTTTTTCTCCACTGCA+CGG + chr8_1:14384625-14384644 Msa1180410:intron 35.0%
! GTTCTATATAGGTTTTGCTG+AGG + chr8_1:14384737-14384756 Msa1180410:intron 35.0%
TTGTGCAATCCAAAATCACT+AGG + chr8_1:14384807-14384826 Msa1180410:CDS 35.0%
! GAACAAGTTCCTAGTGATTT+TGG - chr8_1:14384819-14384838 None:intergenic 35.0%
! ATGCAACTCAGTATGTGTTT+TGG + chr8_1:14384841-14384860 Msa1180410:CDS 35.0%
! TGCAACTCAGTATGTGTTTT+GGG + chr8_1:14384842-14384861 Msa1180410:CDS 35.0%
CCATGATTGCATTTCATATG+TGG - chr8_1:14385193-14385212 None:intergenic 35.0%
CCACATATGAAATGCAATCA+TGG + chr8_1:14385190-14385209 Msa1180410:three_prime_UTR 35.0%
AGGTGGTAGTTACTCATGTT+AGG - chr8_1:14382318-14382337 None:intergenic 40.0%
CCGAAAATGACACGTATTGA+AGG - chr8_1:14382345-14382364 None:intergenic 40.0%
GTATCTTGCTTCCTAACTTG+TGG + chr8_1:14382465-14382484 Msa1180410:CDS 40.0%
AAGGCTAATTACCCTCCTTA+TGG + chr8_1:14382582-14382601 Msa1180410:CDS 40.0%
CTAATAAACAACCTACTGGG+AGG + chr8_1:14382616-14382635 Msa1180410:CDS 40.0%
CATTTCCACAAGATTGGACT+TGG - chr8_1:14382856-14382875 None:intergenic 40.0%
GTCCATTCAACCAAATCTTG+TGG - chr8_1:14382925-14382944 None:intergenic 40.0%
!! AATACGGTGCTACAGCAATA+GGG - chr8_1:14383035-14383054 None:intergenic 40.0%
!! AAATACGGTGCTACAGCAAT+AGG - chr8_1:14383036-14383055 None:intergenic 40.0%
! TCTTTTGCAGCTGAAACACT+TGG + chr8_1:14383146-14383165 Msa1180410:intron 40.0%
! CTTTTGCAGCTGAAACACTT+GGG + chr8_1:14383147-14383166 Msa1180410:intron 40.0%
AAGCAAAGTTAGCACCAAGA+AGG - chr8_1:14383226-14383245 None:intergenic 40.0%
GACGTTATTTAAGTCGTGCT+TGG + chr8_1:14383316-14383335 Msa1180410:intron 40.0%
!! TATAGTGGATGAGCTGATAG+CGG + chr8_1:14383370-14383389 Msa1180410:intron 40.0%
! GCGGCTTGATAGTTTCAATA+AGG - chr8_1:14383624-14383643 None:intergenic 40.0%
CAAGGAATATCAAGGCAAGT+TGG + chr8_1:14383910-14383929 Msa1180410:CDS 40.0%
ACTGATCAACAGTGATTGCT+TGG - chr8_1:14384048-14384067 None:intergenic 40.0%
AGCTTGTGAATGAGTCTAAC+AGG - chr8_1:14384081-14384100 None:intergenic 40.0%
GGATTAGGAGCTAGGAAAAT+TGG + chr8_1:14384262-14384281 Msa1180410:CDS 40.0%
AGAATCAACACTGATGCACA+AGG + chr8_1:14384364-14384383 Msa1180410:CDS 40.0%
TTATCTCAAATTAACGGCCG+AGG + chr8_1:14384522-14384541 Msa1180410:intron 40.0%
! TATATAGGTTTTGCTGAGGC+AGG + chr8_1:14384741-14384760 Msa1180410:intron 40.0%
! ATATAGGTTTTGCTGAGGCA+GGG + chr8_1:14384742-14384761 Msa1180410:intron 40.0%
ACTTGATTAGCAGCTTCTGA+AGG - chr8_1:14384879-14384898 None:intergenic 40.0%
GGCATAGCTCTTATCACATA+AGG + chr8_1:14384924-14384943 Msa1180410:CDS 40.0%
TGACACGTATTGAAGGAGGA+AGG - chr8_1:14382338-14382357 None:intergenic 45.0%
GTGCAAAGCTACCACAAGTT+AGG - chr8_1:14382479-14382498 None:intergenic 45.0%
GAGATTCCAATGAAGAGGCA+TGG - chr8_1:14382740-14382759 None:intergenic 45.0%
AGGATCCAAGTCCAATCTTG+TGG + chr8_1:14382848-14382867 Msa1180410:intron 45.0%
TAACAACGCTGCAGGTATAG+AGG - chr8_1:14382954-14382973 None:intergenic 45.0%
TACAACTGTAACAACGCTGC+AGG - chr8_1:14382962-14382981 None:intergenic 45.0%
TGCAGCGTTGTTACAGTTGT+AGG + chr8_1:14382961-14382980 Msa1180410:intron 45.0%
GCACCGTATTTCAGATGAAG+AGG + chr8_1:14383045-14383064 Msa1180410:intron 45.0%
ATCCAAGTCCTACCTTAGGT+TGG + chr8_1:14383068-14383087 Msa1180410:intron 45.0%
CATCTACTCCAACCTAAGGT+AGG - chr8_1:14383079-14383098 None:intergenic 45.0%
GCAACATCTACTCCAACCTA+AGG - chr8_1:14383083-14383102 None:intergenic 45.0%
ACCTGCATATCTTAGTCCAC+AGG + chr8_1:14383184-14383203 Msa1180410:CDS 45.0%
TATCTTAGTCCACAGGCATC+AGG + chr8_1:14383191-14383210 Msa1180410:CDS 45.0%
ATCTTAGTCCACAGGCATCA+GGG + chr8_1:14383192-14383211 Msa1180410:CDS 45.0%
CAAAGTTAGCACCAAGAAGG+AGG - chr8_1:14383223-14383242 None:intergenic 45.0%
AACTTTGCTTCAGCTGCATC+TGG + chr8_1:14383236-14383255 Msa1180410:CDS 45.0%
TGGAATTGCATGCTGCCAAT+AGG - chr8_1:14383867-14383886 None:intergenic 45.0%
! ATATCAAGGCAAGTTGGCTC+AGG + chr8_1:14383916-14383935 Msa1180410:CDS 45.0%
! TCAGGTTGCTGGCAGTAAAA+AGG + chr8_1:14383934-14383953 Msa1180410:CDS 45.0%
TGCTTGGTTGATCCAAGGAT+TGG - chr8_1:14384032-14384051 None:intergenic 45.0%
GTGATTGCTTGGTTGATCCA+AGG - chr8_1:14384037-14384056 None:intergenic 45.0%
ATAAAGTCCTTGCAGCAGGT+AGG - chr8_1:14384315-14384334 None:intergenic 45.0%
CCAAATAAAGTCCTTGCAGC+AGG - chr8_1:14384319-14384338 None:intergenic 45.0%
CCTGCTGCAAGGACTTTATT+TGG + chr8_1:14384316-14384335 Msa1180410:CDS 45.0%
TTGCGACACAACCATTCTCA+TGG - chr8_1:14384345-14384364 None:intergenic 45.0%
AAAGTGGTGCGTACCGAAAT+TGG - chr8_1:14384503-14384522 None:intergenic 45.0%
! TTACGCGCAGTTTTCGATCT+CGG - chr8_1:14384606-14384625 None:intergenic 45.0%
TTTCTCCACTGCACGGTATT+CGG + chr8_1:14384632-14384651 Msa1180410:intron 45.0%
GGTATTCGGATCCCAACATA+AGG + chr8_1:14384646-14384665 Msa1180410:intron 45.0%
CACGTATTGAAGGAGGAAGG+TGG - chr8_1:14382335-14382354 None:intergenic 50.0%
GGTGACTCTGCAGTAGATGT+TGG + chr8_1:14382531-14382550 Msa1180410:CDS 50.0%
CCATTGCAAAACCTCCCAGT+AGG - chr8_1:14382630-14382649 None:intergenic 50.0%
! CCTACTGGGAGGTTTTGCAA+TGG + chr8_1:14382627-14382646 Msa1180410:CDS 50.0%
GGTCTTCCATGCCTCTTCAT+TGG + chr8_1:14382731-14382750 Msa1180410:intron 50.0%
GAGGATCCAAGTCCTACCTT+AGG + chr8_1:14383064-14383083 Msa1180410:intron 50.0%
CTCCAACCTAAGGTAGGACT+TGG - chr8_1:14383073-14383092 None:intergenic 50.0%
! GCCTGTGGACTAAGATATGC+AGG - chr8_1:14383188-14383207 None:intergenic 50.0%
TCAGGGAAGAACCTCCTTCT+TGG + chr8_1:14383209-14383228 Msa1180410:CDS 50.0%
GTTGAAATGCAGGGCGTGTA+TGG + chr8_1:14384241-14384260 Msa1180410:intron 50.0%
ATGCAGGGCGTGTATGGATT+AGG + chr8_1:14384247-14384266 Msa1180410:intron 50.0%
!! GCGTGTATGGATTAGGAGCT+AGG + chr8_1:14384254-14384273 Msa1180410:CDS 50.0%
AGTGACCTCACTTCCACCAT+TGG + chr8_1:14384285-14384304 Msa1180410:CDS 50.0%
GTGACCTCACTTCCACCATT+GGG + chr8_1:14384286-14384305 Msa1180410:CDS 50.0%
GGTGCGTACCGAAATTGGAA+GGG - chr8_1:14384498-14384517 None:intergenic 50.0%
TGGTGCGTACCGAAATTGGA+AGG - chr8_1:14384499-14384518 None:intergenic 50.0%
! GTTTTGCTGAGGCAGGGAAA+GGG + chr8_1:14384748-14384767 Msa1180410:CDS 50.0%
AGGTTCTTCCCTGATGCCTG+TGG - chr8_1:14383203-14383222 None:intergenic 55.0%
! GCAACCCAATGGTGGAAGTG+AGG - chr8_1:14384293-14384312 None:intergenic 55.0%
! GGTTTTGCTGAGGCAGGGAA+AGG + chr8_1:14384747-14384766 Msa1180410:intron 55.0%
! GGCAAGTTGGCTCAGGTTGC+TGG + chr8_1:14383923-14383942 Msa1180410:CDS 60.0%
GCAGGTAGGCAACCCAATGG+TGG - chr8_1:14384301-14384320 None:intergenic 60.0%
GCAGCAGGTAGGCAACCCAA+TGG - chr8_1:14384304-14384323 None:intergenic 60.0%
TGGGTTGCCTACCTGCTGCA+AGG + chr8_1:14384305-14384324 Msa1180410:CDS 60.0%
GGGATCCGAATACCGTGCAG+TGG - chr8_1:14384640-14384659 None:intergenic 60.0%
!! GGGAAAGGGTGCTGTGGTAC+AGG + chr8_1:14384762-14384781 Msa1180410:CDS 60.0%
!! GAGGCAGGGAAAGGGTGCTG+TGG + chr8_1:14384756-14384775 Msa1180410:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 14382306 14385226 14382306 ID=Msa1180410;Name=Msa1180410
chr8_1 mRNA 14382306 14385226 14382306 ID=Msa1180410-mRNA-1;Parent=Msa1180410;Name=Msa1180410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.8|1|1|1|5|282|394
chr8_1 exon 14382306 14382672 14382306 ID=Msa1180410-mRNA-1:exon:5264;Parent=Msa1180410-mRNA-1
chr8_1 exon 14383156 14383286 14383156 ID=Msa1180410-mRNA-1:exon:5265;Parent=Msa1180410-mRNA-1
chr8_1 exon 14383875 14384108 14383875 ID=Msa1180410-mRNA-1:exon:5266;Parent=Msa1180410-mRNA-1
chr8_1 exon 14384253 14384508 14384253 ID=Msa1180410-mRNA-1:exon:5267;Parent=Msa1180410-mRNA-1
chr8_1 exon 14384748 14385226 14384748 ID=Msa1180410-mRNA-1:exon:5268;Parent=Msa1180410-mRNA-1
chr8_1 CDS 14382306 14382672 14382306 ID=Msa1180410-mRNA-1:cds;Parent=Msa1180410-mRNA-1
chr8_1 CDS 14383156 14383286 14383156 ID=Msa1180410-mRNA-1:cds;Parent=Msa1180410-mRNA-1
chr8_1 CDS 14383875 14384108 14383875 ID=Msa1180410-mRNA-1:cds;Parent=Msa1180410-mRNA-1
chr8_1 CDS 14384253 14384508 14384253 ID=Msa1180410-mRNA-1:cds;Parent=Msa1180410-mRNA-1
chr8_1 CDS 14384748 14384944 14384748 ID=Msa1180410-mRNA-1:cds;Parent=Msa1180410-mRNA-1
chr8_1 three_prime_UTR 14384945 14385226 14384945 ID=Msa1180410-mRNA-1:three_prime_utr;Parent=Msa1180410-mRNA-1
Gene Sequence

>Msa1180410

ATGGCTATGCCTAACATGAGTAACTACCACCTTCCTCCTTCAATACGTGTCATTTTCGGGATTGCCATATATACTGAGCATACACTGAAGAAATACTTAACTCACCAAAAGCAGAAAATGAAGAACATGAATAGCAAAGTAACACTTGTTCTACTCATAGTATCTTGCTTCCTAACTTGTGGTAGCTTTGCACAAGATACACTTGTACCTGCTATCATAACATTTGGTGACTCTGCAGTAGATGTTGGAAATAATGACTACCTTCCTACTCTTTTTAAGGCTAATTACCCTCCTTATGGTAGAGATTTTACTAATAAACAACCTACTGGGAGGTTTTGCAATGGCAAGTTAGCTACTGATTTTACAGCTGAAACACTTGGGTTTACGAGTTTTGCACCTGCATATCTTAGTCCACAGGCATCAGGGAAGAACCTCCTTCTTGGTGCTAACTTTGCTTCAGCTGCATCTGGTTATGATGAAAAGGCTGCTACGTTGAATCATGCAATTCCATTATCCCAACAGTTAGAATATTTCAAGGAATATCAAGGCAAGTTGGCTCAGGTTGCTGGCAGTAAAAAGGCTGCATCTATTATCAAGGATTCTTTGTATGTATTGAGTGCTGGCAGCAGTGACTTTGTACAAAATTATTATACCAATCCTTGGATCAACCAAGCAATCACTGTTGATCAGTATTCATCTTACCTGTTAGACTCATTCACAAGCTTTATTAAGGGCGTGTATGGATTAGGAGCTAGGAAAATTGGAGTGACCTCACTTCCACCATTGGGTTGCCTACCTGCTGCAAGGACTTTATTTGGTTACCATGAGAATGGTTGTGTCGCAAGAATCAACACTGATGCACAAGGATTTAACAAGAAAGTCAGCTCAGCTGCATCGAATCTTCAAAAGCAACTTCCTGGTCTAAAGATTGTGATTTTTGATATATACAAACCTCTCTTTGACCTTGTTCAAAACCCTTCCAATTTCGGTTTTGCTGAGGCAGGGAAAGGGTGCTGTGGTACAGGTCTTGTAGAAACAACATCATTATTGTGCAATCCAAAATCACTAGGAACTTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTTCATCCTTCAGAAGCTGCTAATCAAGTTCTAGCTGATAATTTAATTACAGCAGGCATAGCTCTTATCACATAA
Protein sequence

>Msa1180410

MAMPNMSNYHLPPSIRVIFGIAIYTEHTLKKYLTHQKQKMKNMNSKVTLVLLIVSCFLTCGSFAQDTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFTNKQPTGRFCNGKLATDFTAETLGFTSFAPAYLSPQASGKNLLLGANFASAASGYDEKAATLNHAIPLSQQLEYFKEYQGKLAQVAGSKKAASIIKDSLYVLSAGSSDFVQNYYTNPWINQAITVDQYSSYLLDSFTSFIKGVYGLGARKIGVTSLPPLGCLPAARTLFGYHENGCVARINTDAQGFNKKVSSAASNLQKQLPGLKIVIFDIYKPLFDLVQNPSNFGFAEAGKGCCGTGLVETTSLLCNPKSLGTCSNATQYVFWDSVHPSEAANQVLADNLITAGIALIT*