AlfalfaGEDB | Msa0337100

M. sativa cultivar zhongmu-4 / Msa0337100

KEGG: K20729
GO: GO:0003002 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000122
PFAM: PF17181.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337100	XP_013465067.1	95.200	125	4	1	1	125	1	123	5.82e-81	243

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337100	sp\|Q8S8I4\|EPF1_ARATH	85.714	63	9	0	63	125	42	104	1.61e-34	118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0059960	Msa0337100	-0.801357	9.356752e-49	-8.615850e-47
Msa0094060	Msa0337100	0.817953	2.523639e-52	-8.615850e-47
Msa0103780	Msa0337100	0.801968	7.009774e-49	-8.615850e-47
Msa0139900	Msa0337100	0.800399	1.467642e-48	-8.615850e-47
Msa0206970	Msa0337100	0.807142	5.838832e-50	-8.615850e-47
Msa0207180	Msa0337100	0.825731	3.993850e-54	-8.615850e-47
Msa0230400	Msa0337100	0.829732	4.365212e-55	-8.615850e-47
Msa0261740	Msa0337100	0.965649	7.035777e-125	-8.615850e-47
Msa0265780	Msa0337100	0.815471	9.091775e-52	-8.615850e-47
Msa0274780	Msa0337100	0.821649	3.608869e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337100	MtrunA17_Chr2g0324101	100.000	55	0	0	71	125	1	55	9.36e-35	114
Msa0337100	MtrunA17_Chr2g0311361	59.615	52	19	1	74	125	47	96	7.14e-14	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337100	AT2G20875.1	85.714	63	9	0	63	125	42	104	1.64e-35	118
Msa0337100	AT1G34245.1	36.752	117	62	3	12	125	10	117	1.17e-15	68.2
Msa0337100	AT1G71866.2	35.433	127	63	5	10	125	15	133	1.34e-14	65.9
Msa0337100	AT1G71866.1	50.000	54	24	1	72	125	119	169	1.45e-13	63.9

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Find 44 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATCTGCATTGGAA+AGG	0.567974	2_4:-56915098	Msa0337100:CDS
AACAAAATAGATGAAAGTAA+AGG	0.501713	2_4:-56915125	Msa0337100:CDS
AACCATGATGAAGAGGAATT+TGG	0.314180	2_4:-56915885	Msa0337100:exon
AAGGAAGATCAAAACATACG+CGG	0.753292	2_4:-56915079	Msa0337100:CDS
ACAAAATAGATGAAAGTAAA+GGG	0.369736	2_4:-56915124	Msa0337100:CDS
ACATGATTCAGCCTCTGCAA+GGG	0.634476	2_4:+56914950	None:intergenic
AGAAATTAACCATGATGAAG+AGG	0.501659	2_4:-56915892	Msa0337100:exon
AGAGGCTGAATCATGTCCAA+TGG	0.629051	2_4:-56914943	Msa0337100:CDS
AGTAGCTGGTTCGAGGTTGC+CGG	0.386785	2_4:-56915039	Msa0337100:CDS
AGTTTGTGCATCCCTTGCAG+AGG	0.574257	2_4:-56914961	Msa0337100:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCAATTTCAAAATGTTGAG+TGG	+	chr2_4:56914698-56914717	None:intergenic	30.0%
AGAAATTAACCATGATGAAG+AGG	-	chr2_4:56914720-56914739	Msa0337100:three_prime_UTR	30.0%
TTTAGTGACAGAATTAGAGA+AGG	+	chr2_4:56915038-56915057	None:intergenic	30.0%
AAACAAAATCTGCATTGGAA+AGG	-	chr2_4:56915514-56915533	Msa0337100:intron	30.0%
TCATGCTTCAATTTCTAACT+TGG	-	chr2_4:56915760-56915779	Msa0337100:intron	30.0%
TGCAATTTCAAAATGTTGAG+TGG	+	chr2_4:56914698-56914717	None:intergenic	30.0%
AGAAATTAACCATGATGAAG+AGG	-	chr2_4:56914720-56914739	Msa0337100:three_prime_UTR	30.0%
TTTAGTGACAGAATTAGAGA+AGG	+	chr2_4:56915038-56915057	None:intergenic	30.0%
AAACAAAATCTGCATTGGAA+AGG	-	chr2_4:56915514-56915533	Msa0337100:intron	30.0%
TCATGCTTCAATTTCTAACT+TGG	-	chr2_4:56915760-56915779	Msa0337100:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	56914660	56915974	56914660	ID=Msa0337100;Name=Msa0337100
chr2_4	mRNA	56914660	56915974	56914660	ID=Msa0337100-mRNA-1;Parent=Msa0337100;Name=Msa0337100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71\|1\|1\|1\|1\|1\|2\|239\|125
chr2_4	exon	56914660	56915176	56914660	ID=Msa0337100-mRNA-1:exon:17329;Parent=Msa0337100-mRNA-1
chr2_4	exon	56915804	56915974	56915804	ID=Msa0337100-mRNA-1:exon:17328;Parent=Msa0337100-mRNA-1
chr2_4	five_prime_UTR	56915904	56915974	56915904	ID=Msa0337100-mRNA-1:five_prime_utr;Parent=Msa0337100-mRNA-1
chr2_4	CDS	56915804	56915903	56915804	ID=Msa0337100-mRNA-1:cds;Parent=Msa0337100-mRNA-1
chr2_4	CDS	56914899	56915176	56914899	ID=Msa0337100-mRNA-1:cds;Parent=Msa0337100-mRNA-1
chr2_4	three_prime_UTR	56914660	56914898	56914660	ID=Msa0337100-mRNA-1:three_prime_utr;Parent=Msa0337100-mRNA-1

Gene Sequence	>Msa0337100 ATGATGAAGAGGAATTTGGTCTATGCTGCTGCATTTGTCCTTATTTTACTTTATGTTCCAATCATCACCTCTTCAAGGCACATAAGTCACTCAAATTCGCGGCATGGACATTCAGATCTTGATGTAGGAAACAAAATAGATGAAAGTAAAGGGGCAAAACAAAATCTGCATTGGAAAGGAAGATCAAAACATACGCGGCGGCCGGACACGATGCAAGTAGCTGGTTCGAGGTTGCCGGATTGTTCTCATGCATGCGGATCATGCTCACCATGCAGATTGGTTATGGTCAGCTTAGTTTGTGCATCCCTTGCAGAGGCTGAATCATGTCCAATGGCCTACAAATGCATGTGCCATAACAAGTCCTATCCTGTCCCATAG
Protein sequence	>Msa0337100 MMKRNLVYAAAFVLILLYVPIITSSRHISHSNSRHGHSDLDVGNKIDESKGAKQNLHWKGRSKHTRRPDTMQVAGSRLPDCSHACGSCSPCRLVMVSLVCASLAEAESCPMAYKCMCHNKSYPVP*