Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337100 | XP_013465067.1 | 95.200 | 125 | 4 | 1 | 1 | 125 | 1 | 123 | 5.82e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337100 | sp|Q8S8I4|EPF1_ARATH | 85.714 | 63 | 9 | 0 | 63 | 125 | 42 | 104 | 1.61e-34 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059960 | Msa0337100 | -0.801357 | 9.356752e-49 | -8.615850e-47 |
| Msa0094060 | Msa0337100 | 0.817953 | 2.523639e-52 | -8.615850e-47 |
| Msa0103780 | Msa0337100 | 0.801968 | 7.009774e-49 | -8.615850e-47 |
| Msa0139900 | Msa0337100 | 0.800399 | 1.467642e-48 | -8.615850e-47 |
| Msa0206970 | Msa0337100 | 0.807142 | 5.838832e-50 | -8.615850e-47 |
| Msa0207180 | Msa0337100 | 0.825731 | 3.993850e-54 | -8.615850e-47 |
| Msa0230400 | Msa0337100 | 0.829732 | 4.365212e-55 | -8.615850e-47 |
| Msa0261740 | Msa0337100 | 0.965649 | 7.035777e-125 | -8.615850e-47 |
| Msa0265780 | Msa0337100 | 0.815471 | 9.091775e-52 | -8.615850e-47 |
| Msa0274780 | Msa0337100 | 0.821649 | 3.608869e-53 | -8.615850e-47 |
| Msa0299620 | Msa0337100 | 0.949382 | 1.426314e-107 | -8.615850e-47 |
| Msa0303780 | Msa0337100 | 0.811535 | 6.670075e-51 | -8.615850e-47 |
| Msa0315480 | Msa0337100 | 0.829709 | 4.422383e-55 | -8.615850e-47 |
| Msa0337100 | Msa0344580 | 0.801156 | 1.028462e-48 | -8.615850e-47 |
| Msa0337100 | Msa0351520 | 0.804565 | 2.032030e-49 | -8.615850e-47 |
| Msa0337100 | Msa0358230 | 0.802107 | 6.562935e-49 | -8.615850e-47 |
| Msa0337100 | Msa0380420 | 0.808245 | 3.405017e-50 | -8.615850e-47 |
| Msa0337100 | Msa0382290 | 0.819329 | 1.229471e-52 | -8.615850e-47 |
| Msa0337100 | Msa0382560 | 0.825148 | 5.489484e-54 | -8.615850e-47 |
| Msa0337100 | Msa0392410 | 0.809430 | 1.900127e-50 | -8.615850e-47 |
| Msa0337100 | Msa0392450 | 0.811872 | 5.632833e-51 | -8.615850e-47 |
| Msa0337100 | Msa0392480 | 0.802216 | 6.233994e-49 | -8.615850e-47 |
| Msa0337100 | Msa0413180 | 0.819488 | 1.131064e-52 | -8.615850e-47 |
| Msa0337100 | Msa0421790 | 0.802328 | 5.911062e-49 | -8.615850e-47 |
| Msa0337100 | Msa0465860 | 0.815138 | 1.078139e-51 | -8.615850e-47 |
| Msa0337100 | Msa0487560 | 0.821926 | 3.113044e-53 | -8.615850e-47 |
| Msa0337100 | Msa0487620 | 0.826986 | 2.007251e-54 | -8.615850e-47 |
| Msa0337100 | Msa0510230 | 0.822424 | 2.386925e-53 | -8.615850e-47 |
| Msa0337100 | Msa0525240 | 0.804114 | 2.522949e-49 | -8.615850e-47 |
| Msa0337100 | Msa0567290 | 0.810334 | 1.213811e-50 | -8.615850e-47 |
| Msa0337100 | Msa0634270 | 0.801415 | 9.102263e-49 | -8.615850e-47 |
| Msa0337100 | Msa0700910 | 0.804991 | 1.655852e-49 | -8.615850e-47 |
| Msa0337100 | Msa0703760 | 0.811626 | 6.372244e-51 | -8.615850e-47 |
| Msa0337100 | Msa0720270 | 0.800824 | 1.202456e-48 | -8.615850e-47 |
| Msa0337100 | Msa0722940 | 0.800292 | 1.543672e-48 | -8.615850e-47 |
| Msa0337100 | Msa0738970 | 0.830061 | 3.630264e-55 | -8.615850e-47 |
| Msa0337100 | Msa0802500 | 0.804898 | 1.731813e-49 | -8.615850e-47 |
| Msa0337100 | Msa0803130 | 0.800338 | 1.510077e-48 | -8.615850e-47 |
| Msa0337100 | Msa0819470 | 0.807739 | 4.362793e-50 | -8.615850e-47 |
| Msa0337100 | Msa0843290 | 0.801739 | 7.812612e-49 | -8.615850e-47 |
| Msa0337100 | Msa0859390 | 0.828812 | 7.302167e-55 | -8.615850e-47 |
| Msa0337100 | Msa0988030 | 0.814504 | 1.489713e-51 | -8.615850e-47 |
| Msa0337100 | Msa1009670 | 0.801945 | 7.084508e-49 | -8.615850e-47 |
| Msa0337100 | Msa1022310 | 0.810009 | 1.426307e-50 | -8.615850e-47 |
| Msa0337100 | Msa1046870 | 0.805176 | 1.514888e-49 | -8.615850e-47 |
| Msa0337100 | Msa1106560 | 0.802090 | 6.614767e-49 | -8.615850e-47 |
| Msa0337100 | Msa1180410 | 0.814645 | 1.386324e-51 | -8.615850e-47 |
| Msa0337100 | Msa1186210 | 0.801329 | 9.480757e-49 | -8.615850e-47 |
| Msa0337100 | Msa1200920 | 0.815137 | 1.078492e-51 | -8.615850e-47 |
| Msa0337100 | Msa1229050 | 0.808660 | 2.777529e-50 | -8.615850e-47 |
| Msa0337100 | Msa1232010 | 0.825138 | 5.519087e-54 | -8.615850e-47 |
| Msa0337100 | Msa1232860 | 0.813553 | 2.414987e-51 | -8.615850e-47 |
| Msa0337100 | Msa1254210 | 0.822454 | 2.348072e-53 | -8.615850e-47 |
| Msa0337100 | Msa1258810 | 0.808881 | 2.490864e-50 | -8.615850e-47 |
| Msa0337100 | Msa1271490 | 0.806387 | 8.431975e-50 | -8.615850e-47 |
| Msa0337100 | Msa1274740 | 0.836824 | 7.460460e-57 | -8.615850e-47 |
| Msa0337100 | Msa1275290 | 0.805351 | 1.392430e-49 | -8.615850e-47 |
| Msa0337100 | Msa1302150 | 0.814423 | 1.552630e-51 | -8.615850e-47 |
| Msa0337100 | Msa1306540 | 0.812297 | 4.549989e-51 | -8.615850e-47 |
| Msa0337100 | Msa1309360 | 0.801606 | 8.317956e-49 | -8.615850e-47 |
| Msa0337100 | Msa1312730 | 0.841089 | 5.868628e-58 | -8.615850e-47 |
| Msa0337100 | Msa1330240 | 0.821390 | 4.142088e-53 | -8.615850e-47 |
| Msa0337100 | Msa1354040 | 0.809285 | 2.040579e-50 | -8.615850e-47 |
| Msa0337100 | Msa1375400 | 0.823617 | 1.257955e-53 | -8.615850e-47 |
| Msa0337100 | Msa1375630 | 0.806556 | 7.768326e-50 | -8.615850e-47 |
| Msa0337100 | Msa1404370 | 0.805918 | 1.058695e-49 | -8.615850e-47 |
| Msa0337100 | Msa1407710 | 0.810697 | 1.013360e-50 | -8.615850e-47 |
| Msa0337100 | Msa1421810 | 0.803134 | 4.029019e-49 | -8.615850e-47 |
| Msa0337100 | Msa1424060 | 0.942680 | 4.680693e-102 | -8.615850e-47 |
| Msa0337100 | Msa1424240 | 0.800950 | 1.132905e-48 | -8.615850e-47 |
| Msa0337100 | Msa1429830 | 0.805543 | 1.268947e-49 | -8.615850e-47 |
| Msa0337100 | Msa1435040 | 0.801947 | 7.079349e-49 | -8.615850e-47 |
| Msa0337100 | Msa1435050 | 0.804290 | 2.319456e-49 | -8.615850e-47 |
| Msa0337100 | Msa1435670 | 0.819010 | 1.453844e-52 | -8.615850e-47 |
| Msa0337100 | Msa1437150 | 0.829882 | 4.014071e-55 | -8.615850e-47 |
| Msa0337100 | Msa1439670 | 0.809500 | 1.834914e-50 | -8.615850e-47 |
| Msa0337100 | Msa1439680 | 0.812329 | 4.479323e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337100 | MtrunA17_Chr2g0324101 | 100.000 | 55 | 0 | 0 | 71 | 125 | 1 | 55 | 9.36e-35 | 114 |
| Msa0337100 | MtrunA17_Chr2g0311361 | 59.615 | 52 | 19 | 1 | 74 | 125 | 47 | 96 | 7.14e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337100 | AT2G20875.1 | 85.714 | 63 | 9 | 0 | 63 | 125 | 42 | 104 | 1.64e-35 | 118 |
| Msa0337100 | AT1G34245.1 | 36.752 | 117 | 62 | 3 | 12 | 125 | 10 | 117 | 1.17e-15 | 68.2 |
| Msa0337100 | AT1G71866.2 | 35.433 | 127 | 63 | 5 | 10 | 125 | 15 | 133 | 1.34e-14 | 65.9 |
| Msa0337100 | AT1G71866.1 | 50.000 | 54 | 24 | 1 | 72 | 125 | 119 | 169 | 1.45e-13 | 63.9 |
Find 44 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATTATAACCAATTCTA+TGG | 0.189428 | 2_4:+56914882 | None:intergenic |
| CGGTTTCCTAGCAATGAAAA+TGG | 0.264943 | 2_4:-56914734 | Msa0337100:three_prime_UTR |
| AACCATGATGAAGAGGAATT+TGG | 0.314180 | 2_4:-56915885 | Msa0337100:exon |
| TTGGAACATAAAGTAAAATA+AGG | 0.361091 | 2_4:+56915843 | None:intergenic |
| ACAAAATAGATGAAAGTAAA+GGG | 0.369736 | 2_4:-56915124 | Msa0337100:CDS |
| AGTAGCTGGTTCGAGGTTGC+CGG | 0.386785 | 2_4:-56915039 | Msa0337100:CDS |
| GTTATGGCACATGCATTTGT+AGG | 0.393759 | 2_4:+56914920 | None:intergenic |
| CTCACCATGCAGATTGGTTA+TGG | 0.400298 | 2_4:-56914991 | Msa0337100:CDS |
| TCATGCTTCAATTTCTAACT+TGG | 0.405231 | 2_4:-56914852 | Msa0337100:three_prime_UTR |
| CCTATCCTGTCCCATAGAAT+TGG | 0.421919 | 2_4:-56914893 | Msa0337100:exon |
| TTCCAATCATCACCTCTTCA+AGG | 0.451680 | 2_4:-56915826 | Msa0337100:CDS |
| CACATGCATTTGTAGGCCAT+TGG | 0.478400 | 2_4:+56914927 | None:intergenic |
| GTTGTCAAACATGGTGGAAA+CGG | 0.478632 | 2_4:-56914754 | Msa0337100:three_prime_UTR |
| CCAGCTACTTGCATCGTGTC+CGG | 0.481240 | 2_4:+56915053 | None:intergenic |
| TGCAATTTCAAAATGTTGAG+TGG | 0.489806 | 2_4:+56915917 | None:intergenic |
| GGACAGGATAGGACTTGTTA+TGG | 0.495900 | 2_4:+56914904 | None:intergenic |
| AGAAATTAACCATGATGAAG+AGG | 0.501659 | 2_4:-56915892 | Msa0337100:exon |
| AACAAAATAGATGAAAGTAA+AGG | 0.501713 | 2_4:-56915125 | Msa0337100:CDS |
| TATAACCAATTCTATGGGAC+AGG | 0.503159 | 2_4:+56914888 | None:intergenic |
| CCGGACACGATGCAAGTAGC+TGG | 0.504387 | 2_4:-56915053 | Msa0337100:CDS |
| TTTCTCTCTGTTGTCAAACA+TGG | 0.507488 | 2_4:-56914763 | Msa0337100:three_prime_UTR |
| TGCCTTGAAGAGGTGATGAT+TGG | 0.508525 | 2_4:+56915824 | None:intergenic |
| GACCAAATTCCTCTTCATCA+TGG | 0.510199 | 2_4:+56915883 | None:intergenic |
| ATCAAAACATACGCGGCGGC+CGG | 0.515180 | 2_4:-56915072 | Msa0337100:CDS |
| GGGCAAAACAAAATCTGCAT+TGG | 0.522159 | 2_4:-56915103 | Msa0337100:CDS |
| TCTATTATAACCAATTCTAT+GGG | 0.530668 | 2_4:+56914883 | None:intergenic |
| ATCATGCTCACCATGCAGAT+TGG | 0.536692 | 2_4:-56914997 | Msa0337100:CDS |
| CGATGCAAGTAGCTGGTTCG+AGG | 0.546321 | 2_4:-56915046 | Msa0337100:CDS |
| CCGCATGCATGAGAACAATC+CGG | 0.553599 | 2_4:+56915020 | None:intergenic |
| GGACATTCAGATCTTGATGT+AGG | 0.560423 | 2_4:-56915149 | Msa0337100:CDS |
| AAACAAAATCTGCATTGGAA+AGG | 0.567974 | 2_4:-56915098 | Msa0337100:CDS |
| GAACTAAGAAGAACATCTCA+AGG | 0.571635 | 2_4:-56915948 | Msa0337100:five_prime_UTR |
| AGTTTGTGCATCCCTTGCAG+AGG | 0.574257 | 2_4:-56914961 | Msa0337100:CDS |
| GACATGATTCAGCCTCTGCA+AGG | 0.577497 | 2_4:+56914949 | None:intergenic |
| CCAATTCTATGGGACAGGAT+AGG | 0.591185 | 2_4:+56914893 | None:intergenic |
| CTCTCTGTTGTCAAACATGG+TGG | 0.591404 | 2_4:-56914760 | Msa0337100:three_prime_UTR |
| CCGGATTGTTCTCATGCATG+CGG | 0.605542 | 2_4:-56915020 | Msa0337100:CDS |
| GTGACTTATGTGCCTTGAAG+AGG | 0.613557 | 2_4:+56915814 | None:intergenic |
| AGAGGCTGAATCATGTCCAA+TGG | 0.629051 | 2_4:-56914943 | Msa0337100:CDS |
| CAAAATAGATGAAAGTAAAG+GGG | 0.631549 | 2_4:-56915123 | Msa0337100:CDS |
| ACATGATTCAGCCTCTGCAA+GGG | 0.634476 | 2_4:+56914950 | None:intergenic |
| CTGACCATAACCAATCTGCA+TGG | 0.667811 | 2_4:+56914987 | None:intergenic |
| GAAGATCAAAACATACGCGG+CGG | 0.743202 | 2_4:-56915076 | Msa0337100:CDS |
| AAGGAAGATCAAAACATACG+CGG | 0.753292 | 2_4:-56915079 | Msa0337100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAAAAAAAAAATATA+TGG | - | chr2_4:56914892-56914911 | Msa0337100:exon | 0.0% |
| !! | ATTAATAAAAAAAAAATATA+TGG | - | chr2_4:56914892-56914911 | Msa0337100:exon | 0.0% |
| !! | TATAGAATCTTAAGTAAAAA+AGG | + | chr2_4:56914842-56914861 | None:intergenic | 15.0% |
| !! | TTAATAGGGAAAATTTATAA+AGG | - | chr2_4:56914999-56915018 | Msa0337100:CDS | 15.0% |
| !! | TAATAGGGAAAATTTATAAA+GGG | - | chr2_4:56915000-56915019 | Msa0337100:CDS | 15.0% |
| !! | AAATTAGTGGAAAAAAAAAA+TGG | + | chr2_4:56915085-56915104 | None:intergenic | 15.0% |
| !!! | TATAGCAAAACAATTTTTTT+TGG | - | chr2_4:56915377-56915396 | Msa0337100:intron | 15.0% |
| !!! | TGTTAATTTTCATGTTAATT+AGG | - | chr2_4:56915436-56915455 | Msa0337100:intron | 15.0% |
| !!! | GTTAATTTTCATGTTAATTA+GGG | - | chr2_4:56915437-56915456 | Msa0337100:intron | 15.0% |
| !! | CTAAAAAAAAAAACAAAACA+AGG | + | chr2_4:56915810-56915829 | None:intergenic | 15.0% |
| !! | TATAGAATCTTAAGTAAAAA+AGG | + | chr2_4:56914842-56914861 | None:intergenic | 15.0% |
| !! | TTAATAGGGAAAATTTATAA+AGG | - | chr2_4:56914999-56915018 | Msa0337100:CDS | 15.0% |
| !! | TAATAGGGAAAATTTATAAA+GGG | - | chr2_4:56915000-56915019 | Msa0337100:CDS | 15.0% |
| !! | AAATTAGTGGAAAAAAAAAA+TGG | + | chr2_4:56915085-56915104 | None:intergenic | 15.0% |
| !!! | TATAGCAAAACAATTTTTTT+TGG | - | chr2_4:56915377-56915396 | Msa0337100:intron | 15.0% |
| !!! | TGTTAATTTTCATGTTAATT+AGG | - | chr2_4:56915436-56915455 | Msa0337100:intron | 15.0% |
| !!! | GTTAATTTTCATGTTAATTA+GGG | - | chr2_4:56915437-56915456 | Msa0337100:intron | 15.0% |
| !! | CTAAAAAAAAAAACAAAACA+AGG | + | chr2_4:56915810-56915829 | None:intergenic | 15.0% |
| !! | TTGGAACATAAAGTAAAATA+AGG | + | chr2_4:56914772-56914791 | None:intergenic | 20.0% |
| !! | TGTTAATGAATAAAGCAATA+AGG | + | chr2_4:56914948-56914967 | None:intergenic | 20.0% |
| !! | TTCATTAACATATTCAAACA+TGG | - | chr2_4:56914958-56914977 | Msa0337100:CDS | 20.0% |
| !! | AATAGGGAAAATTTATAAAG+GGG | - | chr2_4:56915001-56915020 | Msa0337100:CDS | 20.0% |
| !! | CTAAAATATGCATACTAAAT+TGG | - | chr2_4:56915344-56915363 | Msa0337100:intron | 20.0% |
| !! | AACAAAATAGATGAAAGTAA+AGG | - | chr2_4:56915487-56915506 | Msa0337100:intron | 20.0% |
| !! | ACAAAATAGATGAAAGTAAA+GGG | - | chr2_4:56915488-56915507 | Msa0337100:intron | 20.0% |
| !! | TCTATTATAACCAATTCTAT+GGG | + | chr2_4:56915732-56915751 | None:intergenic | 20.0% |
| !! | TTCTATTATAACCAATTCTA+TGG | + | chr2_4:56915733-56915752 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAGGAAAAT+GGG | + | chr2_4:56915802-56915821 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACAAGGAAAA+TGG | + | chr2_4:56915803-56915822 | None:intergenic | 20.0% |
| !! | TTGGAACATAAAGTAAAATA+AGG | + | chr2_4:56914772-56914791 | None:intergenic | 20.0% |
| !! | TGTTAATGAATAAAGCAATA+AGG | + | chr2_4:56914948-56914967 | None:intergenic | 20.0% |
| !! | TTCATTAACATATTCAAACA+TGG | - | chr2_4:56914958-56914977 | Msa0337100:CDS | 20.0% |
| !! | AATAGGGAAAATTTATAAAG+GGG | - | chr2_4:56915001-56915020 | Msa0337100:CDS | 20.0% |
| !! | CTAAAATATGCATACTAAAT+TGG | - | chr2_4:56915344-56915363 | Msa0337100:intron | 20.0% |
| !! | AACAAAATAGATGAAAGTAA+AGG | - | chr2_4:56915487-56915506 | Msa0337100:intron | 20.0% |
| !! | ACAAAATAGATGAAAGTAAA+GGG | - | chr2_4:56915488-56915507 | Msa0337100:intron | 20.0% |
| !! | TCTATTATAACCAATTCTAT+GGG | + | chr2_4:56915732-56915751 | None:intergenic | 20.0% |
| !! | TTCTATTATAACCAATTCTA+TGG | + | chr2_4:56915733-56915752 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAGGAAAAT+GGG | + | chr2_4:56915802-56915821 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACAAGGAAAA+TGG | + | chr2_4:56915803-56915822 | None:intergenic | 20.0% |
| ! | TCAAGAAAAAGCAAAATTAG+TGG | + | chr2_4:56915098-56915117 | None:intergenic | 25.0% |
| !! | TTCTCACTCAATTCAATTTT+TGG | - | chr2_4:56915231-56915250 | Msa0337100:intron | 25.0% |
| !!! | TATTTTAGTGCTTTTTTGAG+TGG | + | chr2_4:56915332-56915351 | None:intergenic | 25.0% |
| ! | CAAAATAGATGAAAGTAAAG+GGG | - | chr2_4:56915489-56915508 | Msa0337100:intron | 25.0% |
| ! | TCAAGAAAAAGCAAAATTAG+TGG | + | chr2_4:56915098-56915117 | None:intergenic | 25.0% |
| !! | TTCTCACTCAATTCAATTTT+TGG | - | chr2_4:56915231-56915250 | Msa0337100:intron | 25.0% |
| !!! | TATTTTAGTGCTTTTTTGAG+TGG | + | chr2_4:56915332-56915351 | None:intergenic | 25.0% |
| ! | CAAAATAGATGAAAGTAAAG+GGG | - | chr2_4:56915489-56915508 | Msa0337100:intron | 25.0% |
| TGCAATTTCAAAATGTTGAG+TGG | + | chr2_4:56914698-56914717 | None:intergenic | 30.0% | |
| AGAAATTAACCATGATGAAG+AGG | - | chr2_4:56914720-56914739 | Msa0337100:three_prime_UTR | 30.0% | |
| TTTAGTGACAGAATTAGAGA+AGG | + | chr2_4:56915038-56915057 | None:intergenic | 30.0% | |
| ! | TTTTCATGTTAATTAGGGCA+TGG | - | chr2_4:56915442-56915461 | Msa0337100:intron | 30.0% |
| AAACAAAATCTGCATTGGAA+AGG | - | chr2_4:56915514-56915533 | Msa0337100:intron | 30.0% | |
| TCATGCTTCAATTTCTAACT+TGG | - | chr2_4:56915760-56915779 | Msa0337100:intron | 30.0% | |
| ! | CAAAAACCATTTTCATTGCT+AGG | + | chr2_4:56915887-56915906 | None:intergenic | 30.0% |
| ! | CTAGCAATGAAAATGGTTTT+TGG | - | chr2_4:56915885-56915904 | Msa0337100:exon | 30.0% |
| TGCAATTTCAAAATGTTGAG+TGG | + | chr2_4:56914698-56914717 | None:intergenic | 30.0% | |
| AGAAATTAACCATGATGAAG+AGG | - | chr2_4:56914720-56914739 | Msa0337100:three_prime_UTR | 30.0% | |
| TTTAGTGACAGAATTAGAGA+AGG | + | chr2_4:56915038-56915057 | None:intergenic | 30.0% | |
| ! | TTTTCATGTTAATTAGGGCA+TGG | - | chr2_4:56915442-56915461 | Msa0337100:intron | 30.0% |
| AAACAAAATCTGCATTGGAA+AGG | - | chr2_4:56915514-56915533 | Msa0337100:intron | 30.0% | |
| TCATGCTTCAATTTCTAACT+TGG | - | chr2_4:56915760-56915779 | Msa0337100:intron | 30.0% | |
| ! | CAAAAACCATTTTCATTGCT+AGG | + | chr2_4:56915887-56915906 | None:intergenic | 30.0% |
| ! | CTAGCAATGAAAATGGTTTT+TGG | - | chr2_4:56915885-56915904 | Msa0337100:exon | 30.0% |
| GAACTAAGAAGAACATCTCA+AGG | - | chr2_4:56914664-56914683 | Msa0337100:three_prime_UTR | 35.0% | |
| AACCATGATGAAGAGGAATT+TGG | - | chr2_4:56914727-56914746 | Msa0337100:three_prime_UTR | 35.0% | |
| AAGGAAGATCAAAACATACG+CGG | - | chr2_4:56915533-56915552 | Msa0337100:intron | 35.0% | |
| TATAACCAATTCTATGGGAC+AGG | + | chr2_4:56915727-56915746 | None:intergenic | 35.0% | |
| TTTCTCTCTGTTGTCAAACA+TGG | - | chr2_4:56915849-56915868 | Msa0337100:CDS | 35.0% | |
| GAACTAAGAAGAACATCTCA+AGG | - | chr2_4:56914664-56914683 | Msa0337100:three_prime_UTR | 35.0% | |
| AACCATGATGAAGAGGAATT+TGG | - | chr2_4:56914727-56914746 | Msa0337100:three_prime_UTR | 35.0% | |
| AAGGAAGATCAAAACATACG+CGG | - | chr2_4:56915533-56915552 | Msa0337100:intron | 35.0% | |
| TATAACCAATTCTATGGGAC+AGG | + | chr2_4:56915727-56915746 | None:intergenic | 35.0% | |
| TTTCTCTCTGTTGTCAAACA+TGG | - | chr2_4:56915849-56915868 | Msa0337100:CDS | 35.0% | |
| GACCAAATTCCTCTTCATCA+TGG | + | chr2_4:56914732-56914751 | None:intergenic | 40.0% | |
| TTCCAATCATCACCTCTTCA+AGG | - | chr2_4:56914786-56914805 | Msa0337100:three_prime_UTR | 40.0% | |
| GGACATTCAGATCTTGATGT+AGG | - | chr2_4:56915463-56915482 | Msa0337100:intron | 40.0% | |
| GGGCAAAACAAAATCTGCAT+TGG | - | chr2_4:56915509-56915528 | Msa0337100:intron | 40.0% | |
| GTTATGGCACATGCATTTGT+AGG | + | chr2_4:56915695-56915714 | None:intergenic | 40.0% | |
| ! | GTTGTCAAACATGGTGGAAA+CGG | - | chr2_4:56915858-56915877 | Msa0337100:CDS | 40.0% |
| CGGTTTCCTAGCAATGAAAA+TGG | - | chr2_4:56915878-56915897 | Msa0337100:CDS | 40.0% | |
| GACCAAATTCCTCTTCATCA+TGG | + | chr2_4:56914732-56914751 | None:intergenic | 40.0% | |
| TTCCAATCATCACCTCTTCA+AGG | - | chr2_4:56914786-56914805 | Msa0337100:three_prime_UTR | 40.0% | |
| GGACATTCAGATCTTGATGT+AGG | - | chr2_4:56915463-56915482 | Msa0337100:intron | 40.0% | |
| GGGCAAAACAAAATCTGCAT+TGG | - | chr2_4:56915509-56915528 | Msa0337100:intron | 40.0% | |
| GTTATGGCACATGCATTTGT+AGG | + | chr2_4:56915695-56915714 | None:intergenic | 40.0% | |
| ! | GTTGTCAAACATGGTGGAAA+CGG | - | chr2_4:56915858-56915877 | Msa0337100:CDS | 40.0% |
| CGGTTTCCTAGCAATGAAAA+TGG | - | chr2_4:56915878-56915897 | Msa0337100:CDS | 40.0% | |
| TGCCTTGAAGAGGTGATGAT+TGG | + | chr2_4:56914791-56914810 | None:intergenic | 45.0% | |
| GTGACTTATGTGCCTTGAAG+AGG | + | chr2_4:56914801-56914820 | None:intergenic | 45.0% | |
| GAAGATCAAAACATACGCGG+CGG | - | chr2_4:56915536-56915555 | Msa0337100:intron | 45.0% | |
| ATCATGCTCACCATGCAGAT+TGG | - | chr2_4:56915615-56915634 | Msa0337100:intron | 45.0% | |
| ! | CTCACCATGCAGATTGGTTA+TGG | - | chr2_4:56915621-56915640 | Msa0337100:intron | 45.0% |
| CTGACCATAACCAATCTGCA+TGG | + | chr2_4:56915628-56915647 | None:intergenic | 45.0% | |
| ACATGATTCAGCCTCTGCAA+GGG | + | chr2_4:56915665-56915684 | None:intergenic | 45.0% | |
| AGAGGCTGAATCATGTCCAA+TGG | - | chr2_4:56915669-56915688 | Msa0337100:intron | 45.0% | |
| CACATGCATTTGTAGGCCAT+TGG | + | chr2_4:56915688-56915707 | None:intergenic | 45.0% | |
| !! | GGACAGGATAGGACTTGTTA+TGG | + | chr2_4:56915711-56915730 | None:intergenic | 45.0% |
| CCAATTCTATGGGACAGGAT+AGG | + | chr2_4:56915722-56915741 | None:intergenic | 45.0% | |
| CCTATCCTGTCCCATAGAAT+TGG | - | chr2_4:56915719-56915738 | Msa0337100:intron | 45.0% | |
| CTCTCTGTTGTCAAACATGG+TGG | - | chr2_4:56915852-56915871 | Msa0337100:CDS | 45.0% | |
| TGCCTTGAAGAGGTGATGAT+TGG | + | chr2_4:56914791-56914810 | None:intergenic | 45.0% | |
| GTGACTTATGTGCCTTGAAG+AGG | + | chr2_4:56914801-56914820 | None:intergenic | 45.0% | |
| GAAGATCAAAACATACGCGG+CGG | - | chr2_4:56915536-56915555 | Msa0337100:intron | 45.0% | |
| ATCATGCTCACCATGCAGAT+TGG | - | chr2_4:56915615-56915634 | Msa0337100:intron | 45.0% | |
| ! | CTCACCATGCAGATTGGTTA+TGG | - | chr2_4:56915621-56915640 | Msa0337100:intron | 45.0% |
| CTGACCATAACCAATCTGCA+TGG | + | chr2_4:56915628-56915647 | None:intergenic | 45.0% | |
| ACATGATTCAGCCTCTGCAA+GGG | + | chr2_4:56915665-56915684 | None:intergenic | 45.0% | |
| AGAGGCTGAATCATGTCCAA+TGG | - | chr2_4:56915669-56915688 | Msa0337100:intron | 45.0% | |
| CACATGCATTTGTAGGCCAT+TGG | + | chr2_4:56915688-56915707 | None:intergenic | 45.0% | |
| !! | GGACAGGATAGGACTTGTTA+TGG | + | chr2_4:56915711-56915730 | None:intergenic | 45.0% |
| CCAATTCTATGGGACAGGAT+AGG | + | chr2_4:56915722-56915741 | None:intergenic | 45.0% | |
| CCTATCCTGTCCCATAGAAT+TGG | - | chr2_4:56915719-56915738 | Msa0337100:intron | 45.0% | |
| CTCTCTGTTGTCAAACATGG+TGG | - | chr2_4:56915852-56915871 | Msa0337100:CDS | 45.0% | |
| !! | TTAAAAATACTTAAATTAAT+AGG | - | chr2_4:56914984-56915003 | Msa0337100:CDS | 5.0% |
| !! | TAAAAATACTTAAATTAATA+GGG | - | chr2_4:56914985-56915004 | Msa0337100:CDS | 5.0% |
| !! | TTAAAAATACTTAAATTAAT+AGG | - | chr2_4:56914984-56915003 | Msa0337100:CDS | 5.0% |
| !! | TAAAAATACTTAAATTAATA+GGG | - | chr2_4:56914985-56915004 | Msa0337100:CDS | 5.0% |
| CCGCATGCATGAGAACAATC+CGG | + | chr2_4:56915595-56915614 | None:intergenic | 50.0% | |
| CCGGATTGTTCTCATGCATG+CGG | - | chr2_4:56915592-56915611 | Msa0337100:intron | 50.0% | |
| AGTTTGTGCATCCCTTGCAG+AGG | - | chr2_4:56915651-56915670 | Msa0337100:intron | 50.0% | |
| GACATGATTCAGCCTCTGCA+AGG | + | chr2_4:56915666-56915685 | None:intergenic | 50.0% | |
| CCGCATGCATGAGAACAATC+CGG | + | chr2_4:56915595-56915614 | None:intergenic | 50.0% | |
| CCGGATTGTTCTCATGCATG+CGG | - | chr2_4:56915592-56915611 | Msa0337100:intron | 50.0% | |
| AGTTTGTGCATCCCTTGCAG+AGG | - | chr2_4:56915651-56915670 | Msa0337100:intron | 50.0% | |
| GACATGATTCAGCCTCTGCA+AGG | + | chr2_4:56915666-56915685 | None:intergenic | 50.0% | |
| ATCAAAACATACGCGGCGGC+CGG | - | chr2_4:56915540-56915559 | Msa0337100:intron | 55.0% | |
| CCAGCTACTTGCATCGTGTC+CGG | + | chr2_4:56915562-56915581 | None:intergenic | 55.0% | |
| !! | CGATGCAAGTAGCTGGTTCG+AGG | - | chr2_4:56915566-56915585 | Msa0337100:intron | 55.0% |
| !! | AGTAGCTGGTTCGAGGTTGC+CGG | - | chr2_4:56915573-56915592 | Msa0337100:intron | 55.0% |
| ATCAAAACATACGCGGCGGC+CGG | - | chr2_4:56915540-56915559 | Msa0337100:intron | 55.0% | |
| CCAGCTACTTGCATCGTGTC+CGG | + | chr2_4:56915562-56915581 | None:intergenic | 55.0% | |
| !! | CGATGCAAGTAGCTGGTTCG+AGG | - | chr2_4:56915566-56915585 | Msa0337100:intron | 55.0% |
| !! | AGTAGCTGGTTCGAGGTTGC+CGG | - | chr2_4:56915573-56915592 | Msa0337100:intron | 55.0% |
| CCGGACACGATGCAAGTAGC+TGG | - | chr2_4:56915559-56915578 | Msa0337100:intron | 60.0% | |
| CCGGACACGATGCAAGTAGC+TGG | - | chr2_4:56915559-56915578 | Msa0337100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 56914660 | 56915974 | 56914660 | ID=Msa0337100;Name=Msa0337100 |
| chr2_4 | mRNA | 56914660 | 56915974 | 56914660 | ID=Msa0337100-mRNA-1;Parent=Msa0337100;Name=Msa0337100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|2|239|125 |
| chr2_4 | exon | 56914660 | 56915176 | 56914660 | ID=Msa0337100-mRNA-1:exon:17329;Parent=Msa0337100-mRNA-1 |
| chr2_4 | exon | 56915804 | 56915974 | 56915804 | ID=Msa0337100-mRNA-1:exon:17328;Parent=Msa0337100-mRNA-1 |
| chr2_4 | five_prime_UTR | 56915904 | 56915974 | 56915904 | ID=Msa0337100-mRNA-1:five_prime_utr;Parent=Msa0337100-mRNA-1 |
| chr2_4 | CDS | 56915804 | 56915903 | 56915804 | ID=Msa0337100-mRNA-1:cds;Parent=Msa0337100-mRNA-1 |
| chr2_4 | CDS | 56914899 | 56915176 | 56914899 | ID=Msa0337100-mRNA-1:cds;Parent=Msa0337100-mRNA-1 |
| chr2_4 | three_prime_UTR | 56914660 | 56914898 | 56914660 | ID=Msa0337100-mRNA-1:three_prime_utr;Parent=Msa0337100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
