Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261740 | XP_013465067.1 | 94.400 | 125 | 5 | 1 | 1 | 125 | 1 | 123 | 8.19e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261740 | sp|Q8S8I4|EPF1_ARATH | 85.714 | 63 | 9 | 0 | 63 | 125 | 42 | 104 | 1.61e-34 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261740 | A0A072VBC6 | 94.400 | 125 | 5 | 1 | 1 | 125 | 1 | 123 | 3.91e-81 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012460 | Msa0261740 | 0.800725 | 1.259781e-48 | -8.615850e-47 |
| Msa0065390 | Msa0261740 | 0.802199 | 6.282714e-49 | -8.615850e-47 |
| Msa0094060 | Msa0261740 | 0.835710 | 1.431930e-56 | -8.615850e-47 |
| Msa0103780 | Msa0261740 | 0.807930 | 3.974421e-50 | -8.615850e-47 |
| Msa0110710 | Msa0261740 | 0.806144 | 9.486177e-50 | -8.615850e-47 |
| Msa0135980 | Msa0261740 | 0.810962 | 8.878847e-51 | -8.615850e-47 |
| Msa0139900 | Msa0261740 | 0.808027 | 3.788672e-50 | -8.615850e-47 |
| Msa0144340 | Msa0261740 | 0.801384 | 9.235236e-49 | -8.615850e-47 |
| Msa0157020 | Msa0261740 | 0.803871 | 2.833846e-49 | -8.615850e-47 |
| Msa0185550 | Msa0261740 | 0.816096 | 6.593790e-52 | -8.615850e-47 |
| Msa0206970 | Msa0261740 | 0.823648 | 1.237221e-53 | -8.615850e-47 |
| Msa0207180 | Msa0261740 | 0.820074 | 8.313133e-53 | -8.615850e-47 |
| Msa0224700 | Msa0261740 | 0.809905 | 1.501713e-50 | -8.615850e-47 |
| Msa0230400 | Msa0261740 | 0.839318 | 1.702708e-57 | -8.615850e-47 |
| Msa0236350 | Msa0261740 | 0.801854 | 7.397379e-49 | -8.615850e-47 |
| Msa0247310 | Msa0261740 | 0.806346 | 8.599709e-50 | -8.615850e-47 |
| Msa0261740 | Msa0265780 | 0.831377 | 1.728239e-55 | -8.615850e-47 |
| Msa0261740 | Msa0274780 | 0.828878 | 7.037415e-55 | -8.615850e-47 |
| Msa0261740 | Msa0299620 | 0.968176 | 2.629478e-128 | -8.615850e-47 |
| Msa0261740 | Msa0303780 | 0.831877 | 1.300805e-55 | -8.615850e-47 |
| Msa0261740 | Msa0315480 | 0.828055 | 1.111883e-54 | -8.615850e-47 |
| Msa0261740 | Msa0337100 | 0.965649 | 7.035777e-125 | -8.615850e-47 |
| Msa0261740 | Msa0344580 | 0.812899 | 3.360100e-51 | -8.615850e-47 |
| Msa0261740 | Msa0351520 | 0.809746 | 1.624785e-50 | -8.615850e-47 |
| Msa0261740 | Msa0380060 | 0.802235 | 6.178296e-49 | -8.615850e-47 |
| Msa0261740 | Msa0380420 | 0.826425 | 2.731491e-54 | -8.615850e-47 |
| Msa0261740 | Msa0382290 | 0.815301 | 9.918644e-52 | -8.615850e-47 |
| Msa0261740 | Msa0382560 | 0.832851 | 7.464172e-56 | -8.615850e-47 |
| Msa0261740 | Msa0392410 | 0.824174 | 9.312901e-54 | -8.615850e-47 |
| Msa0261740 | Msa0392450 | 0.835988 | 1.217597e-56 | -8.615850e-47 |
| Msa0261740 | Msa0392480 | 0.823437 | 1.385816e-53 | -8.615850e-47 |
| Msa0261740 | Msa0413180 | 0.828789 | 7.394895e-55 | -8.615850e-47 |
| Msa0261740 | Msa0417630 | 0.809791 | 1.588604e-50 | -8.615850e-47 |
| Msa0261740 | Msa0421790 | 0.820725 | 5.894347e-53 | -8.615850e-47 |
| Msa0261740 | Msa0429270 | 0.805447 | 1.328983e-49 | -8.615850e-47 |
| Msa0261740 | Msa0439780 | 0.807974 | 3.889720e-50 | -8.615850e-47 |
| Msa0261740 | Msa0448160 | 0.804612 | 1.986596e-49 | -8.615850e-47 |
| Msa0261740 | Msa0458110 | 0.807261 | 5.509736e-50 | -8.615850e-47 |
| Msa0261740 | Msa0465860 | 0.804444 | 2.153710e-49 | -8.615850e-47 |
| Msa0261740 | Msa0467890 | 0.819502 | 1.122799e-52 | -8.615850e-47 |
| Msa0261740 | Msa0467970 | 0.809808 | 1.575901e-50 | -8.615850e-47 |
| Msa0261740 | Msa0476150 | 0.810353 | 1.202206e-50 | -8.615850e-47 |
| Msa0261740 | Msa0487560 | 0.834611 | 2.711060e-56 | -8.615850e-47 |
| Msa0261740 | Msa0487620 | 0.842389 | 2.664510e-58 | -8.615850e-47 |
| Msa0261740 | Msa0510230 | 0.821019 | 5.043867e-53 | -8.615850e-47 |
| Msa0261740 | Msa0525240 | 0.801775 | 7.680865e-49 | -8.615850e-47 |
| Msa0261740 | Msa0526130 | 0.807045 | 6.123408e-50 | -8.615850e-47 |
| Msa0261740 | Msa0567290 | 0.821731 | 3.455589e-53 | -8.615850e-47 |
| Msa0261740 | Msa0578900 | 0.810421 | 1.162549e-50 | -8.615850e-47 |
| Msa0261740 | Msa0594390 | 0.801321 | 9.515981e-49 | -8.615850e-47 |
| Msa0261740 | Msa0610860 | 0.800507 | 1.395255e-48 | -8.615850e-47 |
| Msa0261740 | Msa0640880 | 0.802060 | 6.709720e-49 | -8.615850e-47 |
| Msa0261740 | Msa0703760 | 0.823413 | 1.404010e-53 | -8.615850e-47 |
| Msa0261740 | Msa0709480 | 0.801191 | 1.011453e-48 | -8.615850e-47 |
| Msa0261740 | Msa0734430 | 0.813326 | 2.709335e-51 | -8.615850e-47 |
| Msa0261740 | Msa0738970 | 0.851305 | 9.677978e-61 | -8.615850e-47 |
| Msa0261740 | Msa0803130 | 0.812182 | 4.822387e-51 | -8.615850e-47 |
| Msa0261740 | Msa0804110 | 0.818061 | 2.385836e-52 | -8.615850e-47 |
| Msa0261740 | Msa0819470 | 0.833103 | 6.463200e-56 | -8.615850e-47 |
| Msa0261740 | Msa0823300 | 0.800395 | 1.470665e-48 | -8.615850e-47 |
| Msa0261740 | Msa0841490 | 0.811436 | 7.007310e-51 | -8.615850e-47 |
| Msa0261740 | Msa0859390 | 0.850655 | 1.475980e-60 | -8.615850e-47 |
| Msa0261740 | Msa0884730 | 0.800777 | 1.229363e-48 | -8.615850e-47 |
| Msa0261740 | Msa0893390 | 0.803081 | 4.132639e-49 | -8.615850e-47 |
| Msa0261740 | Msa0930330 | 0.809801 | 1.581205e-50 | -8.615850e-47 |
| Msa0261740 | Msa0931480 | 0.801129 | 1.041706e-48 | -8.615850e-47 |
| Msa0261740 | Msa0946650 | 0.814621 | 1.403781e-51 | -8.615850e-47 |
| Msa0261740 | Msa0988030 | 0.825949 | 3.545375e-54 | -8.615850e-47 |
| Msa0261740 | Msa1004500 | 0.808304 | 3.308404e-50 | -8.615850e-47 |
| Msa0261740 | Msa1009670 | 0.811197 | 7.898524e-51 | -8.615850e-47 |
| Msa0261740 | Msa1009790 | 0.803000 | 4.295463e-49 | -8.615850e-47 |
| Msa0261740 | Msa1011240 | 0.803141 | 4.015312e-49 | -8.615850e-47 |
| Msa0261740 | Msa1022310 | 0.826229 | 3.042720e-54 | -8.615850e-47 |
| Msa0261740 | Msa1027790 | 0.811490 | 6.819877e-51 | -8.615850e-47 |
| Msa0261740 | Msa1046870 | 0.808563 | 2.912728e-50 | -8.615850e-47 |
| Msa0261740 | Msa1061180 | 0.805033 | 1.622481e-49 | -8.615850e-47 |
| Msa0261740 | Msa1072080 | 0.801764 | 7.718830e-49 | -8.615850e-47 |
| Msa0261740 | Msa1084150 | 0.804110 | 2.528403e-49 | -8.615850e-47 |
| Msa0261740 | Msa1084490 | 0.804208 | 2.411999e-49 | -8.615850e-47 |
| Msa0261740 | Msa1106560 | 0.810701 | 1.011074e-50 | -8.615850e-47 |
| Msa0261740 | Msa1112610 | 0.808162 | 3.545840e-50 | -8.615850e-47 |
| Msa0261740 | Msa1127510 | 0.804753 | 1.856867e-49 | -8.615850e-47 |
| Msa0261740 | Msa1166180 | 0.801833 | 7.471933e-49 | -8.615850e-47 |
| Msa0261740 | Msa1180410 | 0.835936 | 1.254800e-56 | -8.615850e-47 |
| Msa0261740 | Msa1183390 | 0.801809 | 7.556937e-49 | -8.615850e-47 |
| Msa0261740 | Msa1186210 | 0.805361 | 1.385569e-49 | -8.615850e-47 |
| Msa0261740 | Msa1200920 | 0.811895 | 5.569733e-51 | -8.615850e-47 |
| Msa0261740 | Msa1208510 | 0.804435 | 2.162862e-49 | -8.615850e-47 |
| Msa0261740 | Msa1218720 | 0.801991 | 6.934401e-49 | -8.615850e-47 |
| Msa0261740 | Msa1226360 | 0.810793 | 9.658307e-51 | -8.615850e-47 |
| Msa0261740 | Msa1229050 | 0.820402 | 6.992428e-53 | -8.615850e-47 |
| Msa0261740 | Msa1232010 | 0.844988 | 5.374140e-59 | -8.615850e-47 |
| Msa0261740 | Msa1232860 | 0.810315 | 1.225343e-50 | -8.615850e-47 |
| Msa0261740 | Msa1254210 | 0.829718 | 4.399746e-55 | -8.615850e-47 |
| Msa0261740 | Msa1271490 | 0.817706 | 2.868724e-52 | -8.615850e-47 |
| Msa0261740 | Msa1271510 | 0.810505 | 1.114803e-50 | -8.615850e-47 |
| Msa0261740 | Msa1274740 | 0.853710 | 1.995730e-61 | -8.615850e-47 |
| Msa0261740 | Msa1275290 | 0.808884 | 2.487057e-50 | -8.615850e-47 |
| Msa0261740 | Msa1302150 | 0.805158 | 1.527738e-49 | -8.615850e-47 |
| Msa0261740 | Msa1306540 | 0.826392 | 2.781372e-54 | -8.615850e-47 |
| Msa0261740 | Msa1309360 | 0.810150 | 1.330074e-50 | -8.615850e-47 |
| Msa0261740 | Msa1312730 | 0.855832 | 4.842709e-62 | -8.615850e-47 |
| Msa0261740 | Msa1330240 | 0.810174 | 1.314307e-50 | -8.615850e-47 |
| Msa0261740 | Msa1336320 | 0.803332 | 3.666981e-49 | -8.615850e-47 |
| Msa0261740 | Msa1354040 | 0.811112 | 8.239769e-51 | -8.615850e-47 |
| Msa0261740 | Msa1367810 | 0.811782 | 5.893897e-51 | -8.615850e-47 |
| Msa0261740 | Msa1369860 | 0.808610 | 2.846038e-50 | -8.615850e-47 |
| Msa0261740 | Msa1375400 | 0.832516 | 9.043433e-56 | -8.615850e-47 |
| Msa0261740 | Msa1375630 | 0.823180 | 1.591042e-53 | -8.615850e-47 |
| Msa0261740 | Msa1376530 | 0.818592 | 1.808604e-52 | -8.615850e-47 |
| Msa0261740 | Msa1398840 | 0.801401 | 9.164295e-49 | -8.615850e-47 |
| Msa0261740 | Msa1404370 | 0.819310 | 1.241923e-52 | -8.615850e-47 |
| Msa0261740 | Msa1407710 | 0.814054 | 1.872603e-51 | -8.615850e-47 |
| Msa0261740 | Msa1424060 | 0.961420 | 1.108606e-119 | -8.615850e-47 |
| Msa0261740 | Msa1424240 | 0.820037 | 8.475377e-53 | -8.615850e-47 |
| Msa0261740 | Msa1429390 | 0.802252 | 6.127311e-49 | -8.615850e-47 |
| Msa0261740 | Msa1429830 | 0.806984 | 6.308710e-50 | -8.615850e-47 |
| Msa0261740 | Msa1435670 | 0.813552 | 2.416556e-51 | -8.615850e-47 |
| Msa0261740 | Msa1437150 | 0.851053 | 1.139834e-60 | -8.615850e-47 |
| Msa0261740 | Msa1439680 | 0.810251 | 1.264878e-50 | -8.615850e-47 |
| Msa0261740 | Msa1442030 | 0.807927 | 3.979612e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261740 | MtrunA17_Chr2g0324101 | 100.000 | 55 | 0 | 0 | 71 | 125 | 1 | 55 | 9.26e-35 | 114 |
| Msa0261740 | MtrunA17_Chr2g0311361 | 59.615 | 52 | 19 | 1 | 74 | 125 | 47 | 96 | 7.30e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261740 | AT2G20875.1 | 85.714 | 63 | 9 | 0 | 63 | 125 | 42 | 104 | 1.64e-35 | 118 |
| Msa0261740 | AT1G34245.1 | 36.752 | 117 | 62 | 3 | 12 | 125 | 10 | 117 | 1.58e-15 | 67.8 |
| Msa0261740 | AT1G71866.2 | 36.220 | 127 | 62 | 5 | 10 | 125 | 15 | 133 | 8.46e-15 | 66.2 |
| Msa0261740 | AT1G71866.1 | 50.000 | 54 | 24 | 1 | 72 | 125 | 119 | 169 | 1.41e-13 | 63.9 |
Find 44 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATTATAACCAATTCTA+TGG | 0.189428 | 2_2:+60351336 | None:intergenic |
| CGGTTTCCTAGCAATGAAAA+TGG | 0.264943 | 2_2:-60351180 | Msa0261740:three_prime_UTR |
| AACCATGATGAAGAGGAATT+TGG | 0.314180 | 2_2:-60352863 | Msa0261740:exon |
| TTGGAATATAAAGTAAAATA+AGG | 0.344189 | 2_2:+60352821 | None:intergenic |
| ACAAAATAGATGAAAGTAAA+GGG | 0.369736 | 2_2:-60351578 | Msa0261740:CDS |
| AGTAGCTGGTTCGAGGTTGC+CGG | 0.386785 | 2_2:-60351493 | Msa0261740:CDS |
| GTTATGGCACATGCATTTGT+AGG | 0.393759 | 2_2:+60351374 | None:intergenic |
| CTCACCATGCAGATTGGTTA+TGG | 0.400298 | 2_2:-60351445 | Msa0261740:CDS |
| TCATGCTTCAATTTCTAACT+TGG | 0.405231 | 2_2:-60351306 | Msa0261740:three_prime_UTR |
| CCTATCCTGTCCCATAGAAT+TGG | 0.421919 | 2_2:-60351347 | Msa0261740:exon |
| TTCCAATCATCACCTCTTCA+AGG | 0.450570 | 2_2:-60352804 | Msa0261740:CDS |
| CACATGCATTTGTAGGCCAT+TGG | 0.478400 | 2_2:+60351381 | None:intergenic |
| GTTGTCAAACATGGTGGAAA+CGG | 0.478632 | 2_2:-60351200 | Msa0261740:three_prime_UTR |
| CCAGCTACTTGCATCGTGTC+CGG | 0.481240 | 2_2:+60351507 | None:intergenic |
| TGCAATTTCAAAATGTTGAG+TGG | 0.489806 | 2_2:+60352895 | None:intergenic |
| GGACAGGATAGGACTTGTTA+TGG | 0.495900 | 2_2:+60351358 | None:intergenic |
| TGCCTTGAAGAGGTGATGAT+TGG | 0.500190 | 2_2:+60352802 | None:intergenic |
| AGAAATTAACCATGATGAAG+AGG | 0.501659 | 2_2:-60352870 | Msa0261740:exon |
| AACAAAATAGATGAAAGTAA+AGG | 0.501713 | 2_2:-60351579 | Msa0261740:CDS |
| TATAACCAATTCTATGGGAC+AGG | 0.503159 | 2_2:+60351342 | None:intergenic |
| CCGGACACGATGCAAGTAGC+TGG | 0.504387 | 2_2:-60351507 | Msa0261740:CDS |
| TTTCTCTCTGTTGTCAAACA+TGG | 0.507488 | 2_2:-60351209 | Msa0261740:three_prime_UTR |
| GACCAAATTCCTCTTCATCA+TGG | 0.510199 | 2_2:+60352861 | None:intergenic |
| ATCAAAACATACGCGGCGGC+CGG | 0.515180 | 2_2:-60351526 | Msa0261740:CDS |
| GGGCAAAACAAAATCTGCAT+TGG | 0.522159 | 2_2:-60351557 | Msa0261740:CDS |
| TCTATTATAACCAATTCTAT+GGG | 0.530668 | 2_2:+60351337 | None:intergenic |
| ATCATGCTCACCATGCAGAT+TGG | 0.536692 | 2_2:-60351451 | Msa0261740:CDS |
| CGATGCAAGTAGCTGGTTCG+AGG | 0.546321 | 2_2:-60351500 | Msa0261740:CDS |
| CCGCATGCATGAGAACAATC+CGG | 0.553599 | 2_2:+60351474 | None:intergenic |
| GGACATTCAGATCTTGATGT+AGG | 0.560423 | 2_2:-60351603 | Msa0261740:CDS |
| AAACAAAATCTGCATTGGAA+AGG | 0.567974 | 2_2:-60351552 | Msa0261740:CDS |
| GAACTAAGAAGAACATCTCA+AGG | 0.571635 | 2_2:-60352926 | Msa0261740:five_prime_UTR |
| AGTTTGTGCATCCCTTGCAG+AGG | 0.574257 | 2_2:-60351415 | Msa0261740:CDS |
| GACATGATTCAGCCTCTGCA+AGG | 0.577497 | 2_2:+60351403 | None:intergenic |
| CCAATTCTATGGGACAGGAT+AGG | 0.591185 | 2_2:+60351347 | None:intergenic |
| CTCTCTGTTGTCAAACATGG+TGG | 0.591404 | 2_2:-60351206 | Msa0261740:three_prime_UTR |
| CCGGATTGTTCTCATGCATG+CGG | 0.605542 | 2_2:-60351474 | Msa0261740:CDS |
| GTGACTTATGTGCCTTGAAG+AGG | 0.613557 | 2_2:+60352792 | None:intergenic |
| AGAGGCTGAATCATGTCCAA+TGG | 0.629051 | 2_2:-60351397 | Msa0261740:CDS |
| CAAAATAGATGAAAGTAAAG+GGG | 0.631549 | 2_2:-60351577 | Msa0261740:CDS |
| ACATGATTCAGCCTCTGCAA+GGG | 0.634476 | 2_2:+60351404 | None:intergenic |
| CTGACCATAACCAATCTGCA+TGG | 0.667811 | 2_2:+60351441 | None:intergenic |
| GAAGATCAAAACATACGCGG+CGG | 0.743202 | 2_2:-60351530 | Msa0261740:CDS |
| AAGGAAGATCAAAACATACG+CGG | 0.753292 | 2_2:-60351533 | Msa0261740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATA+AGG | - | chr2_2:60351711-60351730 | Msa0261740:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | - | chr2_2:60351711-60351730 | Msa0261740:intron | 0.0% |
| !!! | TGATTTTTTTTTCATAAAAA+AGG | - | chr2_2:60351994-60352013 | Msa0261740:intron | 10.0% |
| !!! | TGATTTTTTTTTCATAAAAA+AGG | - | chr2_2:60351994-60352013 | Msa0261740:intron | 10.0% |
| !! | TTGGAATATAAAGTAAAATA+AGG | + | chr2_2:60351218-60351237 | None:intergenic | 15.0% |
| !! | TAGAATCTTAAGTAAAAAAT+TGG | + | chr2_2:60351288-60351307 | None:intergenic | 15.0% |
| !!! | ATTGTCATTTTATAACATAA+AGG | + | chr2_2:60351867-60351886 | None:intergenic | 15.0% |
| !!! | GTTGTTATTTTATAACATAA+AGG | - | chr2_2:60352025-60352044 | Msa0261740:intron | 15.0% |
| !!! | TAATCCTTTAACTTAATTTT+AGG | + | chr2_2:60352092-60352111 | None:intergenic | 15.0% |
| !!! | TGTTAATTTTCATGTTAATT+AGG | - | chr2_2:60352406-60352425 | Msa0261740:intron | 15.0% |
| !!! | GTTAATTTTCATGTTAATTA+GGG | - | chr2_2:60352407-60352426 | Msa0261740:intron | 15.0% |
| !! | AACTAAAAAAAAACAAAACA+AGG | + | chr2_2:60352780-60352799 | None:intergenic | 15.0% |
| !! | TTGGAATATAAAGTAAAATA+AGG | + | chr2_2:60351218-60351237 | None:intergenic | 15.0% |
| !! | TAGAATCTTAAGTAAAAAAT+TGG | + | chr2_2:60351288-60351307 | None:intergenic | 15.0% |
| !!! | ATTGTCATTTTATAACATAA+AGG | + | chr2_2:60351867-60351886 | None:intergenic | 15.0% |
| !!! | GTTGTTATTTTATAACATAA+AGG | - | chr2_2:60352025-60352044 | Msa0261740:intron | 15.0% |
| !!! | TAATCCTTTAACTTAATTTT+AGG | + | chr2_2:60352092-60352111 | None:intergenic | 15.0% |
| !!! | TGTTAATTTTCATGTTAATT+AGG | - | chr2_2:60352406-60352425 | Msa0261740:intron | 15.0% |
| !!! | GTTAATTTTCATGTTAATTA+GGG | - | chr2_2:60352407-60352426 | Msa0261740:intron | 15.0% |
| !! | AACTAAAAAAAAACAAAACA+AGG | + | chr2_2:60352780-60352799 | None:intergenic | 15.0% |
| !! | TTAATTGTCATGTTTGAATA+TGG | + | chr2_2:60351414-60351433 | None:intergenic | 20.0% |
| !! | TTAATAGGGAAAATTTATAG+AGG | - | chr2_2:60351445-60351464 | Msa0261740:CDS | 20.0% |
| !! | TAATAGGGAAAATTTATAGA+GGG | - | chr2_2:60351446-60351465 | Msa0261740:CDS | 20.0% |
| !! | CAAAATTAGTGGAAAAAAAA+TGG | + | chr2_2:60351533-60351552 | None:intergenic | 20.0% |
| !! | AATCGTGACAAAAAAAATAA+AGG | + | chr2_2:60351840-60351859 | None:intergenic | 20.0% |
| !!! | TCAATGAAATTTGATTTTCT+AGG | - | chr2_2:60351913-60351932 | Msa0261740:intron | 20.0% |
| !!! | TGAGTTTGATGAATTTTTTT+TGG | - | chr2_2:60351965-60351984 | Msa0261740:intron | 20.0% |
| !! | GTTACCTAAAATTAAGTTAA+AGG | - | chr2_2:60352085-60352104 | Msa0261740:intron | 20.0% |
| !! | CTAAAATATGCATACTAAAT+TGG | - | chr2_2:60352341-60352360 | Msa0261740:intron | 20.0% |
| !! | AACAAAATAGATGAAAGTAA+AGG | - | chr2_2:60352457-60352476 | Msa0261740:intron | 20.0% |
| !! | ACAAAATAGATGAAAGTAAA+GGG | - | chr2_2:60352458-60352477 | Msa0261740:intron | 20.0% |
| !! | TCTATTATAACCAATTCTAT+GGG | + | chr2_2:60352702-60352721 | None:intergenic | 20.0% |
| !! | TTCTATTATAACCAATTCTA+TGG | + | chr2_2:60352703-60352722 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAGGAAAAT+GGG | + | chr2_2:60352772-60352791 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACAAGGAAAA+TGG | + | chr2_2:60352773-60352792 | None:intergenic | 20.0% |
| !! | TTAATTGTCATGTTTGAATA+TGG | + | chr2_2:60351414-60351433 | None:intergenic | 20.0% |
| !! | TTAATAGGGAAAATTTATAG+AGG | - | chr2_2:60351445-60351464 | Msa0261740:CDS | 20.0% |
| !! | TAATAGGGAAAATTTATAGA+GGG | - | chr2_2:60351446-60351465 | Msa0261740:CDS | 20.0% |
| !! | CAAAATTAGTGGAAAAAAAA+TGG | + | chr2_2:60351533-60351552 | None:intergenic | 20.0% |
| !! | AATCGTGACAAAAAAAATAA+AGG | + | chr2_2:60351840-60351859 | None:intergenic | 20.0% |
| !!! | TCAATGAAATTTGATTTTCT+AGG | - | chr2_2:60351913-60351932 | Msa0261740:intron | 20.0% |
| !!! | TGAGTTTGATGAATTTTTTT+TGG | - | chr2_2:60351965-60351984 | Msa0261740:intron | 20.0% |
| !! | GTTACCTAAAATTAAGTTAA+AGG | - | chr2_2:60352085-60352104 | Msa0261740:intron | 20.0% |
| !! | CTAAAATATGCATACTAAAT+TGG | - | chr2_2:60352341-60352360 | Msa0261740:intron | 20.0% |
| !! | AACAAAATAGATGAAAGTAA+AGG | - | chr2_2:60352457-60352476 | Msa0261740:intron | 20.0% |
| !! | ACAAAATAGATGAAAGTAAA+GGG | - | chr2_2:60352458-60352477 | Msa0261740:intron | 20.0% |
| !! | TCTATTATAACCAATTCTAT+GGG | + | chr2_2:60352702-60352721 | None:intergenic | 20.0% |
| !! | TTCTATTATAACCAATTCTA+TGG | + | chr2_2:60352703-60352722 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAGGAAAAT+GGG | + | chr2_2:60352772-60352791 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACAAGGAAAA+TGG | + | chr2_2:60352773-60352792 | None:intergenic | 20.0% |
| ! | AATAGGGAAAATTTATAGAG+GGG | - | chr2_2:60351447-60351466 | Msa0261740:CDS | 25.0% |
| ! | TCAAGAAAAAGCAAAATTAG+TGG | + | chr2_2:60351544-60351563 | None:intergenic | 25.0% |
| ! | GTTACCTAAAATTAAGTCAA+GGG | + | chr2_2:60351809-60351828 | None:intergenic | 25.0% |
| ! | TGTTACCTAAAATTAAGTCA+AGG | + | chr2_2:60351810-60351829 | None:intergenic | 25.0% |
| ! | TCGTGACAAAAAAAAGATAA+AGG | - | chr2_2:60352054-60352073 | Msa0261740:intron | 25.0% |
| !!! | TATTTTAGTGCTTTTTTGAG+TGG | + | chr2_2:60352329-60352348 | None:intergenic | 25.0% |
| ! | CAAAATAGATGAAAGTAAAG+GGG | - | chr2_2:60352459-60352478 | Msa0261740:intron | 25.0% |
| ! | AATAGGGAAAATTTATAGAG+GGG | - | chr2_2:60351447-60351466 | Msa0261740:CDS | 25.0% |
| ! | TCAAGAAAAAGCAAAATTAG+TGG | + | chr2_2:60351544-60351563 | None:intergenic | 25.0% |
| ! | GTTACCTAAAATTAAGTCAA+GGG | + | chr2_2:60351809-60351828 | None:intergenic | 25.0% |
| ! | TGTTACCTAAAATTAAGTCA+AGG | + | chr2_2:60351810-60351829 | None:intergenic | 25.0% |
| ! | TCGTGACAAAAAAAAGATAA+AGG | - | chr2_2:60352054-60352073 | Msa0261740:intron | 25.0% |
| !!! | TATTTTAGTGCTTTTTTGAG+TGG | + | chr2_2:60352329-60352348 | None:intergenic | 25.0% |
| ! | CAAAATAGATGAAAGTAAAG+GGG | - | chr2_2:60352459-60352478 | Msa0261740:intron | 25.0% |
| TGCAATTTCAAAATGTTGAG+TGG | + | chr2_2:60351144-60351163 | None:intergenic | 30.0% | |
| AGAAATTAACCATGATGAAG+AGG | - | chr2_2:60351166-60351185 | Msa0261740:three_prime_UTR | 30.0% | |
| TTTAGTGACAGAATTAGAGA+AGG | + | chr2_2:60351484-60351503 | None:intergenic | 30.0% | |
| ! | TAGTCCCTTGACTTAATTTT+AGG | - | chr2_2:60351802-60351821 | Msa0261740:intron | 30.0% |
| ! | TTTTCATGTTAATTAGGGCA+TGG | - | chr2_2:60352412-60352431 | Msa0261740:intron | 30.0% |
| AAACAAAATCTGCATTGGAA+AGG | - | chr2_2:60352484-60352503 | Msa0261740:intron | 30.0% | |
| TCATGCTTCAATTTCTAACT+TGG | - | chr2_2:60352730-60352749 | Msa0261740:intron | 30.0% | |
| ! | CAAAAACCATTTTCATTGCT+AGG | + | chr2_2:60352865-60352884 | None:intergenic | 30.0% |
| ! | CTAGCAATGAAAATGGTTTT+TGG | - | chr2_2:60352863-60352882 | Msa0261740:exon | 30.0% |
| TGCAATTTCAAAATGTTGAG+TGG | + | chr2_2:60351144-60351163 | None:intergenic | 30.0% | |
| AGAAATTAACCATGATGAAG+AGG | - | chr2_2:60351166-60351185 | Msa0261740:three_prime_UTR | 30.0% | |
| TTTAGTGACAGAATTAGAGA+AGG | + | chr2_2:60351484-60351503 | None:intergenic | 30.0% | |
| ! | TAGTCCCTTGACTTAATTTT+AGG | - | chr2_2:60351802-60351821 | Msa0261740:intron | 30.0% |
| ! | TTTTCATGTTAATTAGGGCA+TGG | - | chr2_2:60352412-60352431 | Msa0261740:intron | 30.0% |
| AAACAAAATCTGCATTGGAA+AGG | - | chr2_2:60352484-60352503 | Msa0261740:intron | 30.0% | |
| TCATGCTTCAATTTCTAACT+TGG | - | chr2_2:60352730-60352749 | Msa0261740:intron | 30.0% | |
| ! | CAAAAACCATTTTCATTGCT+AGG | + | chr2_2:60352865-60352884 | None:intergenic | 30.0% |
| ! | CTAGCAATGAAAATGGTTTT+TGG | - | chr2_2:60352863-60352882 | Msa0261740:exon | 30.0% |
| GAACTAAGAAGAACATCTCA+AGG | - | chr2_2:60351110-60351129 | Msa0261740:three_prime_UTR | 35.0% | |
| AACCATGATGAAGAGGAATT+TGG | - | chr2_2:60351173-60351192 | Msa0261740:three_prime_UTR | 35.0% | |
| AAGGAAGATCAAAACATACG+CGG | - | chr2_2:60352503-60352522 | Msa0261740:intron | 35.0% | |
| TATAACCAATTCTATGGGAC+AGG | + | chr2_2:60352697-60352716 | None:intergenic | 35.0% | |
| TTTCTCTCTGTTGTCAAACA+TGG | - | chr2_2:60352827-60352846 | Msa0261740:CDS | 35.0% | |
| GAACTAAGAAGAACATCTCA+AGG | - | chr2_2:60351110-60351129 | Msa0261740:three_prime_UTR | 35.0% | |
| AACCATGATGAAGAGGAATT+TGG | - | chr2_2:60351173-60351192 | Msa0261740:three_prime_UTR | 35.0% | |
| AAGGAAGATCAAAACATACG+CGG | - | chr2_2:60352503-60352522 | Msa0261740:intron | 35.0% | |
| TATAACCAATTCTATGGGAC+AGG | + | chr2_2:60352697-60352716 | None:intergenic | 35.0% | |
| TTTCTCTCTGTTGTCAAACA+TGG | - | chr2_2:60352827-60352846 | Msa0261740:CDS | 35.0% | |
| GACCAAATTCCTCTTCATCA+TGG | + | chr2_2:60351178-60351197 | None:intergenic | 40.0% | |
| TTCCAATCATCACCTCTTCA+AGG | - | chr2_2:60351232-60351251 | Msa0261740:three_prime_UTR | 40.0% | |
| GGACATTCAGATCTTGATGT+AGG | - | chr2_2:60352433-60352452 | Msa0261740:intron | 40.0% | |
| GGGCAAAACAAAATCTGCAT+TGG | - | chr2_2:60352479-60352498 | Msa0261740:intron | 40.0% | |
| GTTATGGCACATGCATTTGT+AGG | + | chr2_2:60352665-60352684 | None:intergenic | 40.0% | |
| ! | GTTGTCAAACATGGTGGAAA+CGG | - | chr2_2:60352836-60352855 | Msa0261740:CDS | 40.0% |
| CGGTTTCCTAGCAATGAAAA+TGG | - | chr2_2:60352856-60352875 | Msa0261740:CDS | 40.0% | |
| GACCAAATTCCTCTTCATCA+TGG | + | chr2_2:60351178-60351197 | None:intergenic | 40.0% | |
| TTCCAATCATCACCTCTTCA+AGG | - | chr2_2:60351232-60351251 | Msa0261740:three_prime_UTR | 40.0% | |
| GGACATTCAGATCTTGATGT+AGG | - | chr2_2:60352433-60352452 | Msa0261740:intron | 40.0% | |
| GGGCAAAACAAAATCTGCAT+TGG | - | chr2_2:60352479-60352498 | Msa0261740:intron | 40.0% | |
| GTTATGGCACATGCATTTGT+AGG | + | chr2_2:60352665-60352684 | None:intergenic | 40.0% | |
| ! | GTTGTCAAACATGGTGGAAA+CGG | - | chr2_2:60352836-60352855 | Msa0261740:CDS | 40.0% |
| CGGTTTCCTAGCAATGAAAA+TGG | - | chr2_2:60352856-60352875 | Msa0261740:CDS | 40.0% | |
| TGCCTTGAAGAGGTGATGAT+TGG | + | chr2_2:60351237-60351256 | None:intergenic | 45.0% | |
| GTGACTTATGTGCCTTGAAG+AGG | + | chr2_2:60351247-60351266 | None:intergenic | 45.0% | |
| GAAGATCAAAACATACGCGG+CGG | - | chr2_2:60352506-60352525 | Msa0261740:intron | 45.0% | |
| ATCATGCTCACCATGCAGAT+TGG | - | chr2_2:60352585-60352604 | Msa0261740:intron | 45.0% | |
| ! | CTCACCATGCAGATTGGTTA+TGG | - | chr2_2:60352591-60352610 | Msa0261740:intron | 45.0% |
| CTGACCATAACCAATCTGCA+TGG | + | chr2_2:60352598-60352617 | None:intergenic | 45.0% | |
| ACATGATTCAGCCTCTGCAA+GGG | + | chr2_2:60352635-60352654 | None:intergenic | 45.0% | |
| AGAGGCTGAATCATGTCCAA+TGG | - | chr2_2:60352639-60352658 | Msa0261740:intron | 45.0% | |
| CACATGCATTTGTAGGCCAT+TGG | + | chr2_2:60352658-60352677 | None:intergenic | 45.0% | |
| !! | GGACAGGATAGGACTTGTTA+TGG | + | chr2_2:60352681-60352700 | None:intergenic | 45.0% |
| CCAATTCTATGGGACAGGAT+AGG | + | chr2_2:60352692-60352711 | None:intergenic | 45.0% | |
| CCTATCCTGTCCCATAGAAT+TGG | - | chr2_2:60352689-60352708 | Msa0261740:intron | 45.0% | |
| CTCTCTGTTGTCAAACATGG+TGG | - | chr2_2:60352830-60352849 | Msa0261740:CDS | 45.0% | |
| TGCCTTGAAGAGGTGATGAT+TGG | + | chr2_2:60351237-60351256 | None:intergenic | 45.0% | |
| GTGACTTATGTGCCTTGAAG+AGG | + | chr2_2:60351247-60351266 | None:intergenic | 45.0% | |
| GAAGATCAAAACATACGCGG+CGG | - | chr2_2:60352506-60352525 | Msa0261740:intron | 45.0% | |
| ATCATGCTCACCATGCAGAT+TGG | - | chr2_2:60352585-60352604 | Msa0261740:intron | 45.0% | |
| ! | CTCACCATGCAGATTGGTTA+TGG | - | chr2_2:60352591-60352610 | Msa0261740:intron | 45.0% |
| CTGACCATAACCAATCTGCA+TGG | + | chr2_2:60352598-60352617 | None:intergenic | 45.0% | |
| ACATGATTCAGCCTCTGCAA+GGG | + | chr2_2:60352635-60352654 | None:intergenic | 45.0% | |
| AGAGGCTGAATCATGTCCAA+TGG | - | chr2_2:60352639-60352658 | Msa0261740:intron | 45.0% | |
| CACATGCATTTGTAGGCCAT+TGG | + | chr2_2:60352658-60352677 | None:intergenic | 45.0% | |
| !! | GGACAGGATAGGACTTGTTA+TGG | + | chr2_2:60352681-60352700 | None:intergenic | 45.0% |
| CCAATTCTATGGGACAGGAT+AGG | + | chr2_2:60352692-60352711 | None:intergenic | 45.0% | |
| CCTATCCTGTCCCATAGAAT+TGG | - | chr2_2:60352689-60352708 | Msa0261740:intron | 45.0% | |
| CTCTCTGTTGTCAAACATGG+TGG | - | chr2_2:60352830-60352849 | Msa0261740:CDS | 45.0% | |
| !! | ACATTAATAAAAAAAAAATA+TGG | - | chr2_2:60351338-60351357 | Msa0261740:exon | 5.0% |
| !! | TTAAAAATACTTAAATTAAT+AGG | - | chr2_2:60351430-60351449 | Msa0261740:CDS | 5.0% |
| !! | TAAAAATACTTAAATTAATA+GGG | - | chr2_2:60351431-60351450 | Msa0261740:CDS | 5.0% |
| !! | ACATTAATAAAAAAAAAATA+TGG | - | chr2_2:60351338-60351357 | Msa0261740:exon | 5.0% |
| !! | TTAAAAATACTTAAATTAAT+AGG | - | chr2_2:60351430-60351449 | Msa0261740:CDS | 5.0% |
| !! | TAAAAATACTTAAATTAATA+GGG | - | chr2_2:60351431-60351450 | Msa0261740:CDS | 5.0% |
| CCGCATGCATGAGAACAATC+CGG | + | chr2_2:60352565-60352584 | None:intergenic | 50.0% | |
| CCGGATTGTTCTCATGCATG+CGG | - | chr2_2:60352562-60352581 | Msa0261740:intron | 50.0% | |
| AGTTTGTGCATCCCTTGCAG+AGG | - | chr2_2:60352621-60352640 | Msa0261740:intron | 50.0% | |
| GACATGATTCAGCCTCTGCA+AGG | + | chr2_2:60352636-60352655 | None:intergenic | 50.0% | |
| CCGCATGCATGAGAACAATC+CGG | + | chr2_2:60352565-60352584 | None:intergenic | 50.0% | |
| CCGGATTGTTCTCATGCATG+CGG | - | chr2_2:60352562-60352581 | Msa0261740:intron | 50.0% | |
| AGTTTGTGCATCCCTTGCAG+AGG | - | chr2_2:60352621-60352640 | Msa0261740:intron | 50.0% | |
| GACATGATTCAGCCTCTGCA+AGG | + | chr2_2:60352636-60352655 | None:intergenic | 50.0% | |
| ATCAAAACATACGCGGCGGC+CGG | - | chr2_2:60352510-60352529 | Msa0261740:intron | 55.0% | |
| CCAGCTACTTGCATCGTGTC+CGG | + | chr2_2:60352532-60352551 | None:intergenic | 55.0% | |
| !! | CGATGCAAGTAGCTGGTTCG+AGG | - | chr2_2:60352536-60352555 | Msa0261740:intron | 55.0% |
| !! | AGTAGCTGGTTCGAGGTTGC+CGG | - | chr2_2:60352543-60352562 | Msa0261740:intron | 55.0% |
| ATCAAAACATACGCGGCGGC+CGG | - | chr2_2:60352510-60352529 | Msa0261740:intron | 55.0% | |
| CCAGCTACTTGCATCGTGTC+CGG | + | chr2_2:60352532-60352551 | None:intergenic | 55.0% | |
| !! | CGATGCAAGTAGCTGGTTCG+AGG | - | chr2_2:60352536-60352555 | Msa0261740:intron | 55.0% |
| !! | AGTAGCTGGTTCGAGGTTGC+CGG | - | chr2_2:60352543-60352562 | Msa0261740:intron | 55.0% |
| CCGGACACGATGCAAGTAGC+TGG | - | chr2_2:60352529-60352548 | Msa0261740:intron | 60.0% | |
| CCGGACACGATGCAAGTAGC+TGG | - | chr2_2:60352529-60352548 | Msa0261740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60351106 | 60352952 | 60351106 | ID=Msa0261740;Name=Msa0261740 |
| chr2_2 | mRNA | 60351106 | 60352952 | 60351106 | ID=Msa0261740-mRNA-1;Parent=Msa0261740;Name=Msa0261740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=71|1|1|1|1|1|2|247|125 |
| chr2_2 | exon | 60351106 | 60351630 | 60351106 | ID=Msa0261740-mRNA-1:exon:18562;Parent=Msa0261740-mRNA-1 |
| chr2_2 | exon | 60352782 | 60352952 | 60352782 | ID=Msa0261740-mRNA-1:exon:18561;Parent=Msa0261740-mRNA-1 |
| chr2_2 | five_prime_UTR | 60352882 | 60352952 | 60352882 | ID=Msa0261740-mRNA-1:five_prime_utr;Parent=Msa0261740-mRNA-1 |
| chr2_2 | CDS | 60352782 | 60352881 | 60352782 | ID=Msa0261740-mRNA-1:cds;Parent=Msa0261740-mRNA-1 |
| chr2_2 | CDS | 60351353 | 60351630 | 60351353 | ID=Msa0261740-mRNA-1:cds;Parent=Msa0261740-mRNA-1 |
| chr2_2 | three_prime_UTR | 60351106 | 60351352 | 60351106 | ID=Msa0261740-mRNA-1:three_prime_utr;Parent=Msa0261740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
