Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456840 | AES96443.2 | 81.818 | 44 | 8 | 0 | 1 | 44 | 1 | 44 | 1.89e-15 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456840 | G7K711 | 81.818 | 44 | 8 | 0 | 1 | 44 | 1 | 44 | 9.03e-16 | 80.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0456840 | 0.817534 | 3.137067e-52 | -8.615850e-47 |
| Msa0017510 | Msa0456840 | 0.829905 | 3.961911e-55 | -8.615850e-47 |
| Msa0086760 | Msa0456840 | 0.807089 | 5.993043e-50 | -8.615850e-47 |
| Msa0140780 | Msa0456840 | 0.805692 | 1.181012e-49 | -8.615850e-47 |
| Msa0157290 | Msa0456840 | 0.829840 | 4.109129e-55 | -8.615850e-47 |
| Msa0200260 | Msa0456840 | 0.827671 | 1.375653e-54 | -8.615850e-47 |
| Msa0379640 | Msa0456840 | 0.802573 | 5.262021e-49 | -8.615850e-47 |
| Msa0436780 | Msa0456840 | 0.802895 | 4.515179e-49 | -8.615850e-47 |
| Msa0440750 | Msa0456840 | 0.802575 | 5.256352e-49 | -8.615850e-47 |
| Msa0456840 | Msa0512900 | 0.836483 | 9.113448e-57 | -8.615850e-47 |
| Msa0456840 | Msa0516170 | 0.803198 | 3.908756e-49 | -8.615850e-47 |
| Msa0456840 | Msa0604350 | 0.805583 | 1.244531e-49 | -8.615850e-47 |
| Msa0456840 | Msa0636170 | 0.808346 | 3.239945e-50 | -8.615850e-47 |
| Msa0456840 | Msa0657970 | 0.825431 | 4.704854e-54 | -8.615850e-47 |
| Msa0456840 | Msa0661650 | 0.800111 | 1.679811e-48 | -8.615850e-47 |
| Msa0456840 | Msa0673450 | 0.800653 | 1.302644e-48 | -8.615850e-47 |
| Msa0456840 | Msa0696640 | 0.802014 | 6.858338e-49 | -8.615850e-47 |
| Msa0456840 | Msa0724210 | 0.808822 | 2.563786e-50 | -8.615850e-47 |
| Msa0456840 | Msa0741570 | 0.803306 | 3.712280e-49 | -8.615850e-47 |
| Msa0456840 | Msa0762360 | 0.800351 | 1.501213e-48 | -8.615850e-47 |
| Msa0456840 | Msa0786500 | 0.805903 | 1.066055e-49 | -8.615850e-47 |
| Msa0456840 | Msa0789250 | 0.803654 | 3.144903e-49 | -8.615850e-47 |
| Msa0456840 | Msa0822650 | 0.808218 | 3.450899e-50 | -8.615850e-47 |
| Msa0456840 | Msa0822870 | 0.811358 | 7.288046e-51 | -8.615850e-47 |
| Msa0456840 | Msa0880140 | 0.826402 | 2.767286e-54 | -8.615850e-47 |
| Msa0456840 | Msa0885280 | 0.800543 | 1.371886e-48 | -8.615850e-47 |
| Msa0456840 | Msa0909120 | 0.812525 | 4.056933e-51 | -8.615850e-47 |
| Msa0456840 | Msa0909140 | 0.821160 | 4.681156e-53 | -8.615850e-47 |
| Msa0456840 | Msa0931520 | 0.800820 | 1.204690e-48 | -8.615850e-47 |
| Msa0456840 | Msa0969260 | 0.810040 | 1.404210e-50 | -8.615850e-47 |
| Msa0456840 | Msa0969520 | 0.806239 | 9.058995e-50 | -8.615850e-47 |
| Msa0456840 | Msa1014540 | 0.814281 | 1.668734e-51 | -8.615850e-47 |
| Msa0456840 | Msa1020190 | 0.813367 | 2.652542e-51 | -8.615850e-47 |
| Msa0456840 | Msa1146110 | 0.811848 | 5.702081e-51 | -8.615850e-47 |
| Msa0456840 | Msa1148020 | 0.826523 | 2.588611e-54 | -8.615850e-47 |
| Msa0456840 | Msa1160670 | 0.820073 | 8.314582e-53 | -8.615850e-47 |
| Msa0456840 | Msa1187940 | 0.813509 | 2.469643e-51 | -8.615850e-47 |
| Msa0456840 | Msa1187950 | 0.804621 | 1.978597e-49 | -8.615850e-47 |
| Msa0456840 | Msa1233910 | 0.812479 | 4.152955e-51 | -8.615850e-47 |
| Msa0456840 | Msa1249490 | 0.805078 | 1.588030e-49 | -8.615850e-47 |
| Msa0456840 | Msa1283860 | 0.809405 | 1.923309e-50 | -8.615850e-47 |
| Msa0456840 | Msa1284680 | 0.804969 | 1.673925e-49 | -8.615850e-47 |
| Msa0456840 | Msa1322890 | 0.808267 | 3.369049e-50 | -8.615850e-47 |
| Msa0456840 | Msa1324500 | 0.809225 | 2.102435e-50 | -8.615850e-47 |
| Msa0456840 | Msa1327680 | 0.804992 | 1.655234e-49 | -8.615850e-47 |
| Msa0456840 | Msa1360060 | 0.811623 | 6.382172e-51 | -8.615850e-47 |
| Msa0456840 | Msa1372760 | 0.814981 | 1.167885e-51 | -8.615850e-47 |
| Msa0456840 | Msa1438250 | 0.818633 | 1.770597e-52 | -8.615850e-47 |
| Msa0243100 | Msa0456840 | 0.830769 | 2.436198e-55 | -8.615850e-47 |
| Msa0287650 | Msa0456840 | 0.801656 | 8.125328e-49 | -8.615850e-47 |
| Msa0306460 | Msa0456840 | 0.802845 | 4.623810e-49 | -8.615850e-47 |
| Msa0337900 | Msa0456840 | 0.816275 | 6.012938e-52 | -8.615850e-47 |
| Msa0357340 | Msa0456840 | 0.824558 | 7.565090e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456840 | MtrunA17_Chr5g0415271 | 81.818 | 44 | 8 | 0 | 1 | 44 | 1 | 44 | 1.94e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGTATCAATCTTATAT+AGG | 0.366162 | 3_3:-51103441 | Msa0456840:exon |
| TAATCATCATCTTCGATTCA+AGG | 0.386052 | 3_3:-51105954 | Msa0456840:intron |
| CAGAAGATGGTGCGATTACC+AGG | 0.406105 | 3_3:+51105992 | None:intergenic |
| CCACTTGATTCCCTTGCGTT+GGG | 0.409880 | 3_3:+51102928 | None:intergenic |
| TCAGTCTCAGTTTGCACGGC+TGG | 0.418620 | 3_3:-51103405 | Msa0456840:three_prime_UTR |
| CCCACTTGATTCCCTTGCGT+TGG | 0.431316 | 3_3:+51102927 | None:intergenic |
| CGAGTCAAGCTTCAAGCTCC+TGG | 0.482645 | 3_3:-51106010 | Msa0456840:CDS |
| ATTCGAACAGTTCGAGATGA+AGG | 0.504070 | 3_3:+51106037 | None:intergenic |
| AGGAAGCAATAAATTTAAGC+TGG | 0.504728 | 3_3:-51103469 | Msa0456840:CDS |
| GAGATCGGAAAGTTCTTCTC+AGG | 0.511097 | 3_3:-51102980 | Msa0456840:three_prime_UTR |
| TCATCTCGAACTGTTCGAAT+CGG | 0.512634 | 3_3:-51106034 | Msa0456840:CDS |
| TTCACAACGGTTCATGCTTG+CGG | 0.521818 | 3_3:+51102870 | None:intergenic |
| CAGGAAAGTAAAACACAAGA+TGG | 0.533616 | 3_3:-51102961 | Msa0456840:three_prime_UTR |
| GTTCCTCTGTTCCCAACGCA+AGG | 0.538012 | 3_3:-51102939 | Msa0456840:three_prime_UTR |
| AGCAGCAACAAAAGTAGTGA+AGG | 0.542395 | 3_3:-51103495 | Msa0456840:CDS |
| ATTGTGTTAGGATGGGAGAT+CGG | 0.543831 | 3_3:-51102995 | Msa0456840:intron |
| AAGAGAGATATCTACGGCTA+AGG | 0.558282 | 3_3:-51104553 | Msa0456840:intron |
| TTGACGATCATCACAGAAGA+TGG | 0.560932 | 3_3:+51105979 | None:intergenic |
| AACAAAAGTAGTGAAGGAAG+AGG | 0.570751 | 3_3:-51103489 | Msa0456840:CDS |
| TTCGAGATGAAGGAACGCTC+TGG | 0.573884 | 3_3:+51106047 | None:intergenic |
| CAGCCGCGAGTGTTAAAAGT+GGG | 0.578565 | 3_3:-51102900 | Msa0456840:three_prime_UTR |
| CCCAACGCAAGGGAATCAAG+TGG | 0.588631 | 3_3:-51102928 | Msa0456840:three_prime_UTR |
| CAGGAGCTTGAAGCTTGACT+CGG | 0.592209 | 3_3:+51106011 | None:intergenic |
| TTCCCTTGCGTTGGGAACAG+AGG | 0.594506 | 3_3:+51102936 | None:intergenic |
| CCAACGCAAGGGAATCAAGT+GGG | 0.597329 | 3_3:-51102927 | Msa0456840:three_prime_UTR |
| GCAGTCAGTCTCAGTTTGCA+CGG | 0.601159 | 3_3:-51103409 | Msa0456840:three_prime_UTR |
| TTCCTCTGTTCCCAACGCAA+GGG | 0.617747 | 3_3:-51102938 | Msa0456840:three_prime_UTR |
| CAACGCAAGGGAATCAAGTG+GGG | 0.622276 | 3_3:-51102926 | Msa0456840:three_prime_UTR |
| TCTAAGAAGAGAGATATCTA+CGG | 0.629357 | 3_3:-51104559 | Msa0456840:CDS |
| GCCGCGAGTGTTAAAAGTGG+GGG | 0.633082 | 3_3:-51102898 | Msa0456840:three_prime_UTR |
| TCAGCCGCGAGTGTTAAAAG+TGG | 0.638737 | 3_3:-51102901 | Msa0456840:three_prime_UTR |
| AGCCGCGAGTGTTAAAAGTG+GGG | 0.663832 | 3_3:-51102899 | Msa0456840:three_prime_UTR |
| AACGCAAGGGAATCAAGTGG+GGG | 0.669401 | 3_3:-51102925 | Msa0456840:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTGTTTTTTTTTTTTTTTT+AGG | - | chr3_3:51103171-51103190 | Msa0456840:intron | 10.0% |
| !! | AGAATAATAAAAAAAAAAAG+CGG | - | chr3_3:51103765-51103784 | Msa0456840:intron | 10.0% |
| !!! | TTTTTTAGGATTTTAATTTC+AGG | - | chr3_3:51103185-51103204 | Msa0456840:intron | 15.0% |
| !!! | TAATTTCTATCAATTTGTTA+AGG | - | chr3_3:51103357-51103376 | Msa0456840:intron | 15.0% |
| !!! | TGTTTTTTGCATTTAATTTT+TGG | - | chr3_3:51104385-51104404 | Msa0456840:intron | 15.0% |
| !!! | TTATTTTTCATTAGCTATTT+TGG | + | chr3_3:51104754-51104773 | None:intergenic | 15.0% |
| !! | ATTAATTAAATGAATGAGTA+TGG | - | chr3_3:51105408-51105427 | Msa0456840:intron | 15.0% |
| !!! | GATATCAGTTATTTTTTATA+AGG | + | chr3_3:51105475-51105494 | None:intergenic | 15.0% |
| !!! | TAAATTGGTGATATTTCAAT+TGG | - | chr3_3:51103222-51103241 | Msa0456840:intron | 20.0% |
| !! | TTCACAAAAATGCTATTAAA+AGG | - | chr3_3:51103544-51103563 | Msa0456840:intron | 20.0% |
| !! | TCACAAAAATGCTATTAAAA+GGG | - | chr3_3:51103545-51103564 | Msa0456840:intron | 20.0% |
| !!! | ATAGATTTTTCTAGTCAATT+TGG | - | chr3_3:51104856-51104875 | Msa0456840:intron | 20.0% |
| !! | ATTAACAAATACCTCTTAAA+AGG | + | chr3_3:51104977-51104996 | None:intergenic | 20.0% |
| !! | TCATATTTAGTGAATAAAGT+TGG | - | chr3_3:51105042-51105061 | Msa0456840:intron | 20.0% |
| !! | AAAAAGCAAACGAAAAATAA+AGG | + | chr3_3:51105307-51105326 | None:intergenic | 20.0% |
| !! | TTTAATTAATGCTCTACATA+GGG | + | chr3_3:51105398-51105417 | None:intergenic | 20.0% |
| !! | ATTTAATTAATGCTCTACAT+AGG | + | chr3_3:51105399-51105418 | None:intergenic | 20.0% |
| !! | TGATAGTATCAATCTTATAT+AGG | - | chr3_3:51105576-51105595 | Msa0456840:intron | 20.0% |
| !! | TATACAATAGAATACTTAAG+TGG | + | chr3_3:51105860-51105879 | None:intergenic | 20.0% |
| ! | TTGTGAAAAATTGAATCGAT+TGG | + | chr3_3:51102946-51102965 | None:intergenic | 25.0% |
| !!! | GATAGCTTTCTAAAGTAAAT+TGG | - | chr3_3:51103207-51103226 | Msa0456840:intron | 25.0% |
| ! | TTCAGTGAAATTGTAAGTAT+CGG | - | chr3_3:51103247-51103266 | Msa0456840:intron | 25.0% |
| !! | GAATATTTTGCATCAGTTTT+AGG | - | chr3_3:51103309-51103328 | Msa0456840:intron | 25.0% |
| !! | AATGTTTTGCAAAGATAAAG+TGG | + | chr3_3:51103400-51103419 | None:intergenic | 25.0% |
| ! | TCAGAATTTATCTTACTTGA+TGG | - | chr3_3:51103463-51103482 | Msa0456840:CDS | 25.0% |
| !!! | AAAATGGACTACTACAAATT+TGG | - | chr3_3:51103493-51103512 | Msa0456840:CDS | 25.0% |
| ! | AATAGAATCCTTCAAATTCT+TGG | - | chr3_3:51104256-51104275 | Msa0456840:intron | 25.0% |
| ! | TTTACCAGAATCTAATCTTA+GGG | + | chr3_3:51104315-51104334 | None:intergenic | 25.0% |
| ! | ATTTACCAGAATCTAATCTT+AGG | + | chr3_3:51104316-51104335 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGATTTTATGTTG+TGG | - | chr3_3:51104499-51104518 | Msa0456840:intron | 25.0% |
| !! | ATTTTATGTTGTGGAAATGA+AGG | - | chr3_3:51104508-51104527 | Msa0456840:intron | 25.0% |
| !! | TTTTATGTTGTGGAAATGAA+GGG | - | chr3_3:51104509-51104528 | Msa0456840:intron | 25.0% |
| !!! | GTATGCATTTTTATTTTGTC+TGG | - | chr3_3:51104998-51105017 | Msa0456840:intron | 25.0% |
| ! | AAACGAAAAATAAAGGAACA+AGG | + | chr3_3:51105300-51105319 | None:intergenic | 25.0% |
| ! | TATTACATCTGTATAGTTAC+TGG | - | chr3_3:51105693-51105712 | Msa0456840:intron | 25.0% |
| ! | GAAACATGTATAGGTATAAT+TGG | + | chr3_3:51105950-51105969 | None:intergenic | 25.0% |
| ! | AATGTTACGATTTTCTCTGA+GGG | + | chr3_3:51102900-51102919 | None:intergenic | 30.0% |
| TAATCATCATCTTCGATTCA+AGG | - | chr3_3:51103063-51103082 | Msa0456840:intron | 30.0% | |
| ! | TTTTCCGATTTTGTTGCAAA+CGG | - | chr3_3:51103115-51103134 | Msa0456840:intron | 30.0% |
| AATTCCGTTTGCAACAAAAT+CGG | + | chr3_3:51103122-51103141 | None:intergenic | 30.0% | |
| !! | AATTGTAAGTATCGGAGATT+CGG | - | chr3_3:51103255-51103274 | Msa0456840:intron | 30.0% |
| TAGAGAAAAATAGTGAGAGA+GGG | + | chr3_3:51103339-51103358 | None:intergenic | 30.0% | |
| TTAGAGAAAAATAGTGAGAG+AGG | + | chr3_3:51103340-51103359 | None:intergenic | 30.0% | |
| TCTTCAATACCTCTTCTATT+AGG | - | chr3_3:51103440-51103459 | Msa0456840:exon | 30.0% | |
| AAATTCTGACCTAATAGAAG+AGG | + | chr3_3:51103452-51103471 | None:intergenic | 30.0% | |
| ! | ACTTGATGGTTCTATCAAAA+TGG | - | chr3_3:51103477-51103496 | Msa0456840:CDS | 30.0% |
| ! | CACTATAATTTTACCTCACT+TGG | - | chr3_3:51103653-51103672 | Msa0456840:intron | 30.0% |
| TTTCTCAAAACGCTAACTTA+GGG | + | chr3_3:51103714-51103733 | None:intergenic | 30.0% | |
| TGAGCCAAAATGAAAAACTT+TGG | + | chr3_3:51103791-51103810 | None:intergenic | 30.0% | |
| AGAGTAATTACTGAACGATT+GGG | + | chr3_3:51104221-51104240 | None:intergenic | 30.0% | |
| !! | AGATTTCAGGTTTCAAACAA+CGG | + | chr3_3:51104285-51104304 | None:intergenic | 30.0% |
| TTAGGGTTTCAATAGATTTC+AGG | + | chr3_3:51104298-51104317 | None:intergenic | 30.0% | |
| TCTAAGAAGAGAGATATCTA+CGG | - | chr3_3:51104458-51104477 | Msa0456840:intron | 30.0% | |
| !! | GCTAAGGTATCTTTCATTTT+TGG | - | chr3_3:51104480-51104499 | Msa0456840:intron | 30.0% |
| !! | TAAGTAGATTGGTGTTATGT+CGG | - | chr3_3:51104549-51104568 | Msa0456840:intron | 30.0% |
| TGAATACTATGAGACATGTT+TGG | - | chr3_3:51104619-51104638 | Msa0456840:intron | 30.0% | |
| TAAGCACTTGGAATATTGTT+TGG | - | chr3_3:51104671-51104690 | Msa0456840:intron | 30.0% | |
| !!! | TGGTTCTCTATTTTTTCAAG+AGG | - | chr3_3:51104876-51104895 | Msa0456840:intron | 30.0% |
| CAATGTGTATCCAACTAAAA+AGG | + | chr3_3:51104935-51104954 | None:intergenic | 30.0% | |
| GATCAGTCTTAAGAACTAAA+TGG | - | chr3_3:51105138-51105157 | Msa0456840:intron | 30.0% | |
| TTCAACAAATAAAGTAACGC+AGG | + | chr3_3:51105200-51105219 | None:intergenic | 30.0% | |
| AGGAAGCAATAAATTTAAGC+TGG | - | chr3_3:51105548-51105567 | Msa0456840:intron | 30.0% | |
| ! | TCAATCGTGTCAAATTTTCT+TGG | - | chr3_3:51105898-51105917 | Msa0456840:intron | 30.0% |
| ! | CAATCGTGTCAAATTTTCTT+GGG | - | chr3_3:51105899-51105918 | Msa0456840:intron | 30.0% |
| GCATAGTATGAAACATGTAT+AGG | + | chr3_3:51105959-51105978 | None:intergenic | 30.0% | |
| !! | CGCATGATTTTAACATTTAC+TGG | + | chr3_3:51105997-51106016 | None:intergenic | 30.0% |
| ! | GAATGTTACGATTTTCTCTG+AGG | + | chr3_3:51102901-51102920 | None:intergenic | 35.0% |
| ! | GTTTTGCAAAGATAAAGTGG+TGG | + | chr3_3:51103397-51103416 | None:intergenic | 35.0% |
| !! | TTGTGAAAGCGCTATTACAT+TGG | + | chr3_3:51103531-51103550 | None:intergenic | 35.0% |
| ATTATAGGGTGCACAGAATT+TGG | - | chr3_3:51103607-51103626 | Msa0456840:intron | 35.0% | |
| GTTTCTCAAAACGCTAACTT+AGG | + | chr3_3:51103715-51103734 | None:intergenic | 35.0% | |
| CAAAATACTCTTCTCTCTCT+CGG | - | chr3_3:51103815-51103834 | Msa0456840:intron | 35.0% | |
| !! | TTTTGGGTGATTGAAAACGA+AGG | + | chr3_3:51104121-51104140 | None:intergenic | 35.0% |
| TTAAAACGAAGGATAGAGGA+AGG | + | chr3_3:51104144-51104163 | None:intergenic | 35.0% | |
| TGAGTTAAAACGAAGGATAG+AGG | + | chr3_3:51104148-51104167 | None:intergenic | 35.0% | |
| GAGAGTAATTACTGAACGAT+TGG | + | chr3_3:51104222-51104241 | None:intergenic | 35.0% | |
| !! | GATTTCAGGTTTCAAACAAC+GGG | + | chr3_3:51104284-51104303 | None:intergenic | 35.0% |
| GAAACCCTAAGATTAGATTC+TGG | - | chr3_3:51104308-51104327 | Msa0456840:intron | 35.0% | |
| !!! | TTGGTTTTGATTTTGTGCTG+TGG | - | chr3_3:51104404-51104423 | Msa0456840:intron | 35.0% |
| ! | ATTTTGTGCTGTGGAAATGT+AGG | - | chr3_3:51104413-51104432 | Msa0456840:intron | 35.0% |
| !! | AAATGAAGGGTGTTATTGGT+TGG | - | chr3_3:51104522-51104541 | Msa0456840:intron | 35.0% |
| !! | AATGAAGGGTGTTATTGGTT+GGG | - | chr3_3:51104523-51104542 | Msa0456840:intron | 35.0% |
| !! | ATGATGCATGCCTTTTTAGT+TGG | - | chr3_3:51104922-51104941 | Msa0456840:intron | 35.0% |
| ! | TATGATGCATGCCTTTTAAG+AGG | - | chr3_3:51104963-51104982 | Msa0456840:intron | 35.0% |
| CAGTCTTAAGAACTAAATGG+AGG | - | chr3_3:51105141-51105160 | Msa0456840:intron | 35.0% | |
| AAATAAAGTAACGCAGGAAG+GGG | + | chr3_3:51105194-51105213 | None:intergenic | 35.0% | |
| CAAATAAAGTAACGCAGGAA+GGG | + | chr3_3:51105195-51105214 | None:intergenic | 35.0% | |
| ACAAATAAAGTAACGCAGGA+AGG | + | chr3_3:51105196-51105215 | None:intergenic | 35.0% | |
| GTAATGTGTTCCCATTAAGA+AGG | - | chr3_3:51105330-51105349 | Msa0456840:intron | 35.0% | |
| ATCTTGAATGTTTGTGCTTC+AGG | - | chr3_3:51105492-51105511 | Msa0456840:intron | 35.0% | |
| AACAAAAGTAGTGAAGGAAG+AGG | - | chr3_3:51105528-51105547 | Msa0456840:intron | 35.0% | |
| TACATCTGTATAGTTACTGG+TGG | - | chr3_3:51105696-51105715 | Msa0456840:intron | 35.0% | |
| CTACCTAAGCTTCATCTATA+AGG | - | chr3_3:51105808-51105827 | Msa0456840:intron | 35.0% | |
| ATATCATCAGTTTCCTAGCT+GGG | + | chr3_3:51105836-51105855 | None:intergenic | 35.0% | |
| AATATCATCAGTTTCCTAGC+TGG | + | chr3_3:51105837-51105856 | None:intergenic | 35.0% | |
| CAGGAAAGTAAAACACAAGA+TGG | - | chr3_3:51106056-51106075 | Msa0456840:exon | 35.0% | |
| ATTCGAACAGTTCGAGATGA+AGG | + | chr3_3:51102983-51103002 | None:intergenic | 40.0% | |
| TCATCTCGAACTGTTCGAAT+CGG | - | chr3_3:51102983-51103002 | Msa0456840:three_prime_UTR | 40.0% | |
| TTGACGATCATCACAGAAGA+TGG | + | chr3_3:51103041-51103060 | None:intergenic | 40.0% | |
| ! | AAAAGTGCAATGCGACGAAA+TGG | + | chr3_3:51103099-51103118 | None:intergenic | 40.0% |
| AGTGTAAGGATTGGAGTACA+TGG | - | chr3_3:51103278-51103297 | Msa0456840:intron | 40.0% | |
| ATTGGAGTACATGGTTCAGA+TGG | - | chr3_3:51103287-51103306 | Msa0456840:intron | 40.0% | |
| TAGATATGTTATAGCGCTCC+TGG | - | chr3_3:51103575-51103594 | Msa0456840:intron | 40.0% | |
| !! | TTAGAAGCGTTATCCAAGTG+AGG | + | chr3_3:51103669-51103688 | None:intergenic | 40.0% |
| AACGCTAACTTAGGGATAGT+AGG | + | chr3_3:51103706-51103725 | None:intergenic | 40.0% | |
| ! | GCGGCCAAAGTTTTTCATTT+TGG | - | chr3_3:51103784-51103803 | Msa0456840:intron | 40.0% |
| !!! | CGAGAGAGAGAAGAGTATTT+TGG | + | chr3_3:51103817-51103836 | None:intergenic | 40.0% |
| AAGTCTATGAGAGAGGAAGA+AGG | + | chr3_3:51103843-51103862 | None:intergenic | 40.0% | |
| ! | GAAGGATAGAGGAAGGTTTT+GGG | + | chr3_3:51104137-51104156 | None:intergenic | 40.0% |
| TTGTGGCTGAGTTAAAACGA+AGG | + | chr3_3:51104155-51104174 | None:intergenic | 40.0% | |
| ! | AACGGGTTCCAAGAATTTGA+AGG | + | chr3_3:51104267-51104286 | None:intergenic | 40.0% |
| AAGAGAGATATCTACGGCTA+AGG | - | chr3_3:51104464-51104483 | Msa0456840:intron | 40.0% | |
| !! | GTGGAAATGAAGGGTGTTAT+TGG | - | chr3_3:51104518-51104537 | Msa0456840:intron | 40.0% |
| !! | ATGAAGGGTGTTATTGGTTG+GGG | - | chr3_3:51104524-51104543 | Msa0456840:intron | 40.0% |
| TGGTTGGGGATTAAGTAGAT+TGG | - | chr3_3:51104538-51104557 | Msa0456840:intron | 40.0% | |
| !! | TAGATTGGTGTTATGTCGGT+TGG | - | chr3_3:51104553-51104572 | Msa0456840:intron | 40.0% |
| !! | AGATTGGTGTTATGTCGGTT+GGG | - | chr3_3:51104554-51104573 | Msa0456840:CDS | 40.0% |
| !! | TGTTGACTTGCATAAGCACT+TGG | - | chr3_3:51104659-51104678 | Msa0456840:intron | 40.0% |
| ACTGTGCTCACCTTCTTAAT+GGG | + | chr3_3:51105343-51105362 | None:intergenic | 40.0% | |
| TACTGTGCTCACCTTCTTAA+TGG | + | chr3_3:51105344-51105363 | None:intergenic | 40.0% | |
| TTGGTTATACTGCATCCACA+TGG | + | chr3_3:51105370-51105389 | None:intergenic | 40.0% | |
| !! | TGCTCTACATAGGGAGTATT+TGG | + | chr3_3:51105389-51105408 | None:intergenic | 40.0% |
| AATGTTTGTGCTTCAGGTGT+GGG | - | chr3_3:51105498-51105517 | Msa0456840:intron | 40.0% | |
| AGCAGCAACAAAAGTAGTGA+AGG | - | chr3_3:51105522-51105541 | Msa0456840:intron | 40.0% | |
| ! | TCTAAGATGCGCACCTAATT+TGG | - | chr3_3:51105721-51105740 | Msa0456840:intron | 40.0% |
| CTAAGATGCGCACCTAATTT+GGG | - | chr3_3:51105722-51105741 | Msa0456840:intron | 40.0% | |
| TAAGATGCGCACCTAATTTG+GGG | - | chr3_3:51105723-51105742 | Msa0456840:intron | 40.0% | |
| AAGTTTCCAGTGGCCAATAA+GGG | + | chr3_3:51105762-51105781 | None:intergenic | 40.0% | |
| GTGCCTTATAGATGAAGCTT+AGG | + | chr3_3:51105814-51105833 | None:intergenic | 40.0% | |
| TCATGCGCTTGAATTGTGTT+AGG | - | chr3_3:51106010-51106029 | Msa0456840:CDS | 40.0% | |
| CGCTTGAATTGTGTTAGGAT+GGG | - | chr3_3:51106015-51106034 | Msa0456840:CDS | 40.0% | |
| ATTGTGTTAGGATGGGAGAT+CGG | - | chr3_3:51106022-51106041 | Msa0456840:CDS | 40.0% | |
| !! | ATTTTCTCTGAGGGAGAGAG+GGG | + | chr3_3:51102891-51102910 | None:intergenic | 45.0% |
| !! | GATTTTCTCTGAGGGAGAGA+GGG | + | chr3_3:51102892-51102911 | None:intergenic | 45.0% |
| TATCGGAGATTCGGAGTGTA+AGG | - | chr3_3:51103264-51103283 | Msa0456840:intron | 45.0% | |
| GAGATTCGGAGTGTAAGGAT+TGG | - | chr3_3:51103269-51103288 | Msa0456840:intron | 45.0% | |
| ! | TCCTGGTCGAGTGCTATTAT+AGG | - | chr3_3:51103592-51103611 | Msa0456840:intron | 45.0% |
| ! | CCTGGTCGAGTGCTATTATA+GGG | - | chr3_3:51103593-51103612 | Msa0456840:intron | 45.0% |
| AGGGTGCACAGAATTTGGAT+TGG | - | chr3_3:51103612-51103631 | Msa0456840:intron | 45.0% | |
| GTGACGAAAGTCTATGAGAG+AGG | + | chr3_3:51103850-51103869 | None:intergenic | 45.0% | |
| AGAGTGAGTGAAAGAGGGTT+TGG | + | chr3_3:51103915-51103934 | None:intergenic | 45.0% | |
| GAGAGAGAGTGAGTGAAAGA+GGG | + | chr3_3:51103920-51103939 | None:intergenic | 45.0% | |
| AGAGAGAGAGTGAGTGAAAG+AGG | + | chr3_3:51103921-51103940 | None:intergenic | 45.0% | |
| TTGAAAACGAAGGTGGAGGA+AGG | + | chr3_3:51104111-51104130 | None:intergenic | 45.0% | |
| GTGATTGAAAACGAAGGTGG+AGG | + | chr3_3:51104115-51104134 | None:intergenic | 45.0% | |
| TGGGTGATTGAAAACGAAGG+TGG | + | chr3_3:51104118-51104137 | None:intergenic | 45.0% | |
| ! | CGAAGGATAGAGGAAGGTTT+TGG | + | chr3_3:51104138-51104157 | None:intergenic | 45.0% |
| GATGAAGAGTAGGACAGTTG+TGG | + | chr3_3:51104172-51104191 | None:intergenic | 45.0% | |
| !! | GAACGATTGGGTTAGTTCGA+CGG | + | chr3_3:51104209-51104228 | None:intergenic | 45.0% |
| TTGTGCTGTGGAAATGTAGG+TGG | - | chr3_3:51104416-51104435 | Msa0456840:intron | 45.0% | |
| !! | GATTGGTGTTATGTCGGTTG+GGG | - | chr3_3:51104555-51104574 | Msa0456840:CDS | 45.0% |
| GTGAGCACAGTATATCCATG+TGG | - | chr3_3:51105352-51105371 | Msa0456840:intron | 45.0% | |
| GAATGTTTGTGCTTCAGGTG+TGG | - | chr3_3:51105497-51105516 | Msa0456840:intron | 45.0% | |
| ! | TGTACGCTTGCTACCCTTAT+TGG | - | chr3_3:51105746-51105765 | Msa0456840:intron | 45.0% |
| CAAGTTTCCAGTGGCCAATA+AGG | + | chr3_3:51105763-51105782 | None:intergenic | 45.0% | |
| TTCCTCTGACAAGTTTCCAG+TGG | + | chr3_3:51105772-51105791 | None:intergenic | 45.0% | |
| GCGCTTGAATTGTGTTAGGA+TGG | - | chr3_3:51106014-51106033 | Msa0456840:CDS | 45.0% | |
| GAGATCGGAAAGTTCTTCTC+AGG | - | chr3_3:51106037-51106056 | Msa0456840:CDS | 45.0% | |
| !!! | TATTCTTTTTTTTTTAATAA+AGG | + | chr3_3:51103751-51103770 | None:intergenic | 5.0% |
| !! | CGATTTTCTCTGAGGGAGAG+AGG | + | chr3_3:51102893-51102912 | None:intergenic | 50.0% |
| TTCGAGATGAAGGAACGCTC+TGG | + | chr3_3:51102973-51102992 | None:intergenic | 50.0% | |
| CAGGAGCTTGAAGCTTGACT+CGG | + | chr3_3:51103009-51103028 | None:intergenic | 50.0% | |
| CAGAAGATGGTGCGATTACC+AGG | + | chr3_3:51103028-51103047 | None:intergenic | 50.0% | |
| GTGCAATGCGACGAAATGGA+TGG | + | chr3_3:51103095-51103114 | None:intergenic | 50.0% | |
| CCCTATAATAGCACTCGACC+AGG | + | chr3_3:51103596-51103615 | None:intergenic | 50.0% | |
| !! | GGTGGATTTGGTGAGTTCGA+CGG | + | chr3_3:51103883-51103902 | None:intergenic | 50.0% |
| AAGAGGGTTTGGAGAGTGGT+GGG | + | chr3_3:51103904-51103923 | None:intergenic | 50.0% | |
| AAAGAGGGTTTGGAGAGTGG+TGG | + | chr3_3:51103905-51103924 | None:intergenic | 50.0% | |
| GTGAAAGAGGGTTTGGAGAG+TGG | + | chr3_3:51103908-51103927 | None:intergenic | 50.0% | |
| AGTTGAGACAGAGAGGACGA+TGG | + | chr3_3:51104044-51104063 | None:intergenic | 50.0% | |
| !! | GTGGTTGATGAGTTCGATGG+TGG | + | chr3_3:51104069-51104088 | None:intergenic | 50.0% |
| !! | GTGGTGGTTGATGAGTTCGA+TGG | + | chr3_3:51104072-51104091 | None:intergenic | 50.0% |
| ! | TTATGTCGGTTGGGGATCAC+AGG | - | chr3_3:51104563-51104582 | Msa0456840:CDS | 50.0% |
| GCAGTCAGTCTCAGTTTGCA+CGG | - | chr3_3:51105608-51105627 | Msa0456840:intron | 50.0% | |
| GCAAGCGTACACCCCAAATT+AGG | + | chr3_3:51105737-51105756 | None:intergenic | 50.0% | |
| TTGCTACCCTTATTGGCCAC+TGG | - | chr3_3:51105753-51105772 | Msa0456840:intron | 50.0% | |
| ! | CATCTATAAGGCACCCAGCT+AGG | - | chr3_3:51105820-51105839 | Msa0456840:intron | 50.0% |
| TTCCTCTGTTCCCAACGCAA+GGG | - | chr3_3:51106079-51106098 | Msa0456840:five_prime_UTR | 50.0% | |
| CCACTTGATTCCCTTGCGTT+GGG | + | chr3_3:51106092-51106111 | None:intergenic | 50.0% | |
| CCAACGCAAGGGAATCAAGT+GGG | - | chr3_3:51106090-51106109 | Msa0456840:five_prime_UTR | 50.0% | |
| CAACGCAAGGGAATCAAGTG+GGG | - | chr3_3:51106091-51106110 | Msa0456840:five_prime_UTR | 50.0% | |
| AACGCAAGGGAATCAAGTGG+GGG | - | chr3_3:51106092-51106111 | Msa0456840:five_prime_UTR | 50.0% | |
| TCAGCCGCGAGTGTTAAAAG+TGG | - | chr3_3:51106116-51106135 | Msa0456840:five_prime_UTR | 50.0% | |
| CAGCCGCGAGTGTTAAAAGT+GGG | - | chr3_3:51106117-51106136 | Msa0456840:five_prime_UTR | 50.0% | |
| AGCCGCGAGTGTTAAAAGTG+GGG | - | chr3_3:51106118-51106137 | Msa0456840:five_prime_UTR | 50.0% | |
| !! | TCCCCCACTTTTAACACTCG+CGG | + | chr3_3:51106123-51106142 | None:intergenic | 50.0% |
| CGAGTCAAGCTTCAAGCTCC+TGG | - | chr3_3:51103007-51103026 | Msa0456840:intron | 55.0% | |
| ! | TGAGTTCGACGGTGGTGGTT+TGG | + | chr3_3:51103872-51103891 | None:intergenic | 55.0% |
| TTTGGTGAGTTCGACGGTGG+TGG | + | chr3_3:51103877-51103896 | None:intergenic | 55.0% | |
| !! | GGATTTGGTGAGTTCGACGG+TGG | + | chr3_3:51103880-51103899 | None:intergenic | 55.0% |
| !! | TGGAGAGTGGTGGGTGGATT+TGG | + | chr3_3:51103895-51103914 | None:intergenic | 55.0% |
| !! | CGACGGTGGCGGATTGAAAA+CGG | + | chr3_3:51104008-51104027 | None:intergenic | 55.0% |
| ATGGTGGCTGGTGAGTTCGA+CGG | + | chr3_3:51104025-51104044 | None:intergenic | 55.0% | |
| TGAGACAGAGAGGACGATGG+TGG | + | chr3_3:51104041-51104060 | None:intergenic | 55.0% | |
| ! | GGTGGTGAGTTGAGACAGAG+AGG | + | chr3_3:51104051-51104070 | None:intergenic | 55.0% |
| !! | GGAAGGTTCTGGAGAGAGGT+CGG | + | chr3_3:51104094-51104113 | None:intergenic | 55.0% |
| !! | TGGAGGAAGGTTCTGGAGAG+AGG | + | chr3_3:51104098-51104117 | None:intergenic | 55.0% |
| ACGAAGGTGGAGGAAGGTTC+TGG | + | chr3_3:51104105-51104124 | None:intergenic | 55.0% | |
| GGGTGCGTGAGATGAAGAGT+AGG | + | chr3_3:51104182-51104201 | None:intergenic | 55.0% | |
| !! | TGGGTTAGTTCGACGGAGGT+GGG | + | chr3_3:51104202-51104221 | None:intergenic | 55.0% |
| !! | TTGGGTTAGTTCGACGGAGG+TGG | + | chr3_3:51104203-51104222 | None:intergenic | 55.0% |
| !! | CGATTGGGTTAGTTCGACGG+AGG | + | chr3_3:51104206-51104225 | None:intergenic | 55.0% |
| TCAGTCTCAGTTTGCACGGC+TGG | - | chr3_3:51105612-51105631 | Msa0456840:intron | 55.0% | |
| GGCCACTGGAAACTTGTCAG+AGG | - | chr3_3:51105767-51105786 | Msa0456840:intron | 55.0% | |
| GTTCCTCTGTTCCCAACGCA+AGG | - | chr3_3:51106078-51106097 | Msa0456840:five_prime_UTR | 55.0% | |
| TTCCCTTGCGTTGGGAACAG+AGG | + | chr3_3:51106084-51106103 | None:intergenic | 55.0% | |
| CCCAACGCAAGGGAATCAAG+TGG | - | chr3_3:51106089-51106108 | Msa0456840:five_prime_UTR | 55.0% | |
| CCCACTTGATTCCCTTGCGT+TGG | + | chr3_3:51106093-51106112 | None:intergenic | 55.0% | |
| GCCGCGAGTGTTAAAAGTGG+GGG | - | chr3_3:51106119-51106138 | Msa0456840:five_prime_UTR | 55.0% | |
| ! | AGGGTTTGGAGAGTGGTGGG+TGG | + | chr3_3:51103901-51103920 | None:intergenic | 60.0% |
| ! | ACAGAGAGGACGATGGTGGC+TGG | + | chr3_3:51104037-51104056 | None:intergenic | 60.0% |
| ! | TTCTGGAGAGAGGTCGGTGG+TGG | + | chr3_3:51104088-51104107 | None:intergenic | 60.0% |
| !! | AGGTTCTGGAGAGAGGTCGG+TGG | + | chr3_3:51104091-51104110 | None:intergenic | 60.0% |
| GCTGGTGAGTTCGACGGTGG+CGG | + | chr3_3:51104019-51104038 | None:intergenic | 65.0% | |
| GTGGCTGGTGAGTTCGACGG+TGG | + | chr3_3:51104022-51104041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 51102884 | 51106155 | 51102884 | ID=Msa0456840;Name=Msa0456840 |
| chr3_3 | mRNA | 51102884 | 51106155 | 51102884 | ID=Msa0456840-mRNA-1;Parent=Msa0456840;Name=Msa0456840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=81|0.66|0.75|1|0.66|0.5|4|192|84 |
| chr3_3 | exon | 51102884 | 51103007 | 51102884 | ID=Msa0456840-mRNA-1:exon:9799;Parent=Msa0456840-mRNA-1 |
| chr3_3 | exon | 51103374 | 51103525 | 51103374 | ID=Msa0456840-mRNA-1:exon:9798;Parent=Msa0456840-mRNA-1 |
| chr3_3 | exon | 51104554 | 51104604 | 51104554 | ID=Msa0456840-mRNA-1:exon:9797;Parent=Msa0456840-mRNA-1 |
| chr3_3 | exon | 51105955 | 51106155 | 51105955 | ID=Msa0456840-mRNA-1:exon:9796;Parent=Msa0456840-mRNA-1 |
| chr3_3 | five_prime_UTR | 51106075 | 51106155 | 51106075 | ID=Msa0456840-mRNA-1:five_prime_utr;Parent=Msa0456840-mRNA-1 |
| chr3_3 | CDS | 51105955 | 51106074 | 51105955 | ID=Msa0456840-mRNA-1:cds;Parent=Msa0456840-mRNA-1 |
| chr3_3 | CDS | 51104554 | 51104604 | 51104554 | ID=Msa0456840-mRNA-1:cds;Parent=Msa0456840-mRNA-1 |
| chr3_3 | CDS | 51103442 | 51103525 | 51103442 | ID=Msa0456840-mRNA-1:cds;Parent=Msa0456840-mRNA-1 |
| chr3_3 | three_prime_UTR | 51103374 | 51103441 | 51103374 | ID=Msa0456840-mRNA-1:three_prime_utr;Parent=Msa0456840-mRNA-1 |
| chr3_3 | three_prime_UTR | 51102884 | 51103007 | 51102884 | ID=Msa0456840-mRNA-1:three_prime_utr;Parent=Msa0456840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
