AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035040 MtrunA17_Chr7g0258291 100.000 122 0 0 1 122 1 122 8.78e-88 250
Msa1035040 MtrunA17_Chr4g0018141 98.361 122 2 0 1 122 1 122 5.61e-87 248
Msa1035040 MtrunA17_Chr2g0317541 97.500 120 3 0 3 122 4 123 7.78e-84 240
Msa1035040 MtrunA17_Chr1g0197931 97.500 120 3 0 3 122 4 123 7.78e-84 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035040 AT3G47370.3 89.344 122 13 0 1 122 1 122 2.33e-76 222
Msa1035040 AT3G47370.2 89.344 122 13 0 1 122 1 122 2.33e-76 222
Msa1035040 AT3G47370.1 89.344 122 13 0 1 122 1 122 2.33e-76 222
Msa1035040 AT5G62300.1 89.256 121 13 0 2 122 4 124 2.00e-75 219
Msa1035040 AT5G62300.2 89.256 121 13 0 2 122 4 124 2.00e-75 219
Msa1035040 AT3G45030.1 89.256 121 13 0 2 122 4 124 2.00e-75 219

Find 54 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTGAGTGAATAGGTATT+AGG 0.271593 7_1:-70747799 None:intergenic
CACTGAGTGAATAGGTATTA+GGG 0.329624 7_1:-70747798 None:intergenic
ATTTAATGGTTGGTAACGTT+TGG 0.351814 7_1:-70749473 None:intergenic
GTTATTAGTTTGTGCTGATT+TGG 0.351954 7_1:+70748034 Msa1035040:intron
AAAGGGTGATCCTAATCTTA+TGG 0.356442 7_1:-70747901 None:intergenic
TTCTCCACAAGGAGTCTTCC+TGG 0.359877 7_1:-70748132 None:intergenic
TAAACTCTGAACAATCAAAA+TGG 0.366742 7_1:+70747823 Msa1035040:exon
GTAATCTGTTTAACAACATC+TGG 0.381438 7_1:-70749149 None:intergenic
AATCTTATGGATCTGCTCTT+GGG 0.403761 7_1:-70747888 None:intergenic
TAATCTTATGGATCTGCTCT+TGG 0.405883 7_1:-70747889 None:intergenic
GGATTCCTCCAAACCAGGCT+TGG 0.415376 7_1:-70747867 None:intergenic
GAAACCCACCAAGCCTGGTT+TGG 0.420702 7_1:+70747859 Msa1035040:CDS
TCCTCCAAACCAGGCTTGGT+GGG 0.429749 7_1:-70747863 None:intergenic
TTCCTCCAAACCAGGCTTGG+TGG 0.433644 7_1:-70747864 None:intergenic
GTGATATGAAGAACCTTAGT+AGG 0.436083 7_1:-70748107 None:intergenic
TTAGAGTGAAGGGTCCTGTT+AGG 0.436691 7_1:+70748081 Msa1035040:CDS
ACCTTAGTAGGCATCCTAAC+AGG 0.444549 7_1:-70748095 None:intergenic
AAGAGCAGATCCATAAGATT+AGG 0.460004 7_1:+70747891 Msa1035040:CDS
AGTTTAAACACTGAGTGAAT+AGG 0.463482 7_1:-70747806 None:intergenic
TTGTTACAGGTACCAACACC+TGG 0.473935 7_1:+70749075 Msa1035040:intron
TTTGACATGCTTGGAGGAAA+GGG 0.476236 7_1:-70747918 None:intergenic
ACCAGGTTCGATGGTGATAG+AGG 0.489959 7_1:-70749171 None:intergenic
CGCCGCAGCTGGTGAATCAA+AGG 0.493969 7_1:-70747775 None:intergenic
GTTTGTGCTGATTTGGTTCG+TGG 0.496204 7_1:+70748041 Msa1035040:intron
GCGATGAAACCCACCAAGCC+TGG 0.496657 7_1:+70747854 Msa1035040:CDS
CGAACCTGGTGTCGAGGTTG+AGG 0.501443 7_1:+70749184 Msa1035040:CDS
TTTGTTATTTGGGACAAAGT+TGG 0.502217 7_1:+70749292 Msa1035040:three_prime_UTR
AGGAAGACTCCTTGTGGAGA+AGG 0.508893 7_1:+70748134 Msa1035040:CDS
TCCTGTTAGGATGCCTACTA+AGG 0.508963 7_1:+70748094 Msa1035040:CDS
GGAGACAGAAATCGAAAGGA+AGG 0.511407 7_1:-70747754 None:intergenic
ACCCACCAAGCCTGGTTTGG+AGG 0.512859 7_1:+70747862 Msa1035040:CDS
TCTTGGGATTCCTCCAAACC+AGG 0.514536 7_1:-70747872 None:intergenic
ACCTCTATCACCATCGAACC+TGG 0.519945 7_1:+70749170 Msa1035040:CDS
TAATCTGTTTAACAACATCT+GGG 0.529679 7_1:-70749148 None:intergenic
TGATTTGGTTCGTGGCGCTA+AGG 0.536928 7_1:+70748049 Msa1035040:CDS
AACCTCGACACCAGGTTCGA+TGG 0.552766 7_1:-70749180 None:intergenic
CACCATCGAACCTGGTGTCG+AGG 0.559437 7_1:+70749178 Msa1035040:CDS
AATGGTTGGTAACGTTTGGA+CGG 0.559766 7_1:-70749469 None:intergenic
CTCCTTTGATTCACCAGCTG+CGG 0.563398 7_1:+70747773 Msa1035040:five_prime_UTR
CGATAACTCTCTTGTGCACA+CGG 0.563868 7_1:-70749112 None:intergenic
GGATAAGCATCTTAGAGTGA+AGG 0.564807 7_1:+70748070 Msa1035040:CDS
TTCAAATCTATCCCAGGTGT+TGG 0.568966 7_1:-70749087 None:intergenic
GATAAGCATCTTAGAGTGAA+GGG 0.578400 7_1:+70748071 Msa1035040:CDS
CAAAGGAGACAGAAATCGAA+AGG 0.581101 7_1:-70747758 None:intergenic
GTAACCTCAACCTCGACACC+AGG 0.583580 7_1:-70749188 None:intergenic
CAACATCTGGGGAACTGTAG+AGG 0.590461 7_1:-70749136 None:intergenic
ATCAAGCATAAAGTTTCTCA+AGG 0.592726 7_1:-70749355 None:intergenic
ACGGAGTTCAAATCTATCCC+AGG 0.607565 7_1:-70749093 None:intergenic
AGGTTCTTCATATCACTACC+AGG 0.631821 7_1:+70748114 Msa1035040:CDS
TTAAGATCAAGCATCTGCAA+TGG 0.639875 7_1:-70749210 None:intergenic
AATGAAATACCTTCTCCACA+AGG 0.646547 7_1:-70748143 None:intergenic
ACTACCAGGAAGACTCCTTG+TGG 0.667890 7_1:+70748128 Msa1035040:CDS
TGTTACAGGTACCAACACCT+GGG 0.689167 7_1:+70749076 Msa1035040:intron
AATCTGTTTAACAACATCTG+GGG 0.693040 7_1:-70749147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAATTATTTGATGAA+AGG + chr7_1:70748209-70748228 Msa1035040:intron 10.0%
!!! TTCTCTTTAAAATAATAAAT+GGG + chr7_1:70748512-70748531 Msa1035040:intron 10.0%
!!! TTTTTTATAGTTTTGTTATT+TGG + chr7_1:70749281-70749300 Msa1035040:three_prime_UTR 10.0%
!!! TTTTTATAGTTTTGTTATTT+GGG + chr7_1:70749282-70749301 Msa1035040:three_prime_UTR 10.0%
!!! TTTTATAATTATTTGATGAA+AGG + chr7_1:70748209-70748228 Msa1035040:intron 10.0%
!!! TTCTCTTTAAAATAATAAAT+GGG + chr7_1:70748512-70748531 Msa1035040:intron 10.0%
!!! TTTTTTATAGTTTTGTTATT+TGG + chr7_1:70749281-70749300 Msa1035040:three_prime_UTR 10.0%
!!! TTTTTATAGTTTTGTTATTT+GGG + chr7_1:70749282-70749301 Msa1035040:three_prime_UTR 10.0%
!!! GTTCTCTTTAAAATAATAAA+TGG + chr7_1:70748511-70748530 Msa1035040:intron 15.0%
!! AAAACTATAAAAAATACAGA+GGG - chr7_1:70749275-70749294 None:intergenic 15.0%
!!! GTTCTCTTTAAAATAATAAA+TGG + chr7_1:70748511-70748530 Msa1035040:intron 15.0%
!! AAAACTATAAAAAATACAGA+GGG - chr7_1:70749275-70749294 None:intergenic 15.0%
!!! TTTAATTCAGTTTTGTTGAA+TGG + chr7_1:70748712-70748731 Msa1035040:intron 20.0%
!! AGACATAACAAGTTAAAAAT+GGG - chr7_1:70749237-70749256 None:intergenic 20.0%
!! CAAAACTATAAAAAATACAG+AGG - chr7_1:70749276-70749295 None:intergenic 20.0%
!!! TTTAATTCAGTTTTGTTGAA+TGG + chr7_1:70748712-70748731 Msa1035040:intron 20.0%
!! AGACATAACAAGTTAAAAAT+GGG - chr7_1:70749237-70749256 None:intergenic 20.0%
!! CAAAACTATAAAAAATACAG+AGG - chr7_1:70749276-70749295 None:intergenic 20.0%
! TAAACTCTGAACAATCAAAA+TGG + chr7_1:70747823-70747842 Msa1035040:exon 25.0%
!! TGAGAGCATAAAAAACATAA+AGG - chr7_1:70747976-70747995 None:intergenic 25.0%
!! TTTCATTGTGTTCTATCTTT+TGG + chr7_1:70748586-70748605 Msa1035040:intron 25.0%
! AATTATCCTACAACCTTAAT+TGG + chr7_1:70748614-70748633 Msa1035040:intron 25.0%
!!! TGTTTCTGAACAAATTTTGA+AGG + chr7_1:70748757-70748776 Msa1035040:intron 25.0%
!!! GCATTTTGTTATTATGCTAT+TGG + chr7_1:70748890-70748909 Msa1035040:intron 25.0%
! TAATCTGTTTAACAACATCT+GGG - chr7_1:70749151-70749170 None:intergenic 25.0%
! CAGACATAACAAGTTAAAAA+TGG - chr7_1:70749238-70749257 None:intergenic 25.0%
! TAAACTCTGAACAATCAAAA+TGG + chr7_1:70747823-70747842 Msa1035040:exon 25.0%
!! TGAGAGCATAAAAAACATAA+AGG - chr7_1:70747976-70747995 None:intergenic 25.0%
!! TTTCATTGTGTTCTATCTTT+TGG + chr7_1:70748586-70748605 Msa1035040:intron 25.0%
! AATTATCCTACAACCTTAAT+TGG + chr7_1:70748614-70748633 Msa1035040:intron 25.0%
!!! TGTTTCTGAACAAATTTTGA+AGG + chr7_1:70748757-70748776 Msa1035040:intron 25.0%
!!! GCATTTTGTTATTATGCTAT+TGG + chr7_1:70748890-70748909 Msa1035040:intron 25.0%
! TAATCTGTTTAACAACATCT+GGG - chr7_1:70749151-70749170 None:intergenic 25.0%
! CAGACATAACAAGTTAAAAA+TGG - chr7_1:70749238-70749257 None:intergenic 25.0%
AGTTTAAACACTGAGTGAAT+AGG - chr7_1:70747809-70747828 None:intergenic 30.0%
!! GTTATTAGTTTGTGCTGATT+TGG + chr7_1:70748034-70748053 Msa1035040:intron 30.0%
ATTTGATGAAAGGTAGTCAA+TGG + chr7_1:70748219-70748238 Msa1035040:intron 30.0%
AGATTAGAAACATCATTGAG+AGG + chr7_1:70748247-70748266 Msa1035040:intron 30.0%
GATTAGAAACATCATTGAGA+GGG + chr7_1:70748248-70748267 Msa1035040:intron 30.0%
! GTTTTTCTAAGCTCCTAATA+TGG + chr7_1:70748376-70748395 Msa1035040:intron 30.0%
TCCTAATATGGCTTACAAAT+GGG + chr7_1:70748388-70748407 Msa1035040:intron 30.0%
TAAAGAGAACAAACCAAACA+CGG - chr7_1:70748501-70748520 None:intergenic 30.0%
! CTAGTTGTAGTTTTTGCAAT+TGG + chr7_1:70748545-70748564 Msa1035040:intron 30.0%
AATCTGTTTAACAACATCTG+GGG - chr7_1:70749150-70749169 None:intergenic 30.0%
GTAATCTGTTTAACAACATC+TGG - chr7_1:70749152-70749171 None:intergenic 30.0%
!! TTTGTTATTTGGGACAAAGT+TGG + chr7_1:70749292-70749311 Msa1035040:three_prime_UTR 30.0%
!!! GGCTTGTTTTCTTTAGTTTT+CGG + chr7_1:70749313-70749332 Msa1035040:three_prime_UTR 30.0%
!!! TTTTCTTTAGTTTTCGGTTC+TGG + chr7_1:70749319-70749338 Msa1035040:three_prime_UTR 30.0%
ATCAAGCATAAAGTTTCTCA+AGG - chr7_1:70749358-70749377 None:intergenic 30.0%
AGTTTAAACACTGAGTGAAT+AGG - chr7_1:70747809-70747828 None:intergenic 30.0%
!! GTTATTAGTTTGTGCTGATT+TGG + chr7_1:70748034-70748053 Msa1035040:intron 30.0%
ATTTGATGAAAGGTAGTCAA+TGG + chr7_1:70748219-70748238 Msa1035040:intron 30.0%
AGATTAGAAACATCATTGAG+AGG + chr7_1:70748247-70748266 Msa1035040:intron 30.0%
GATTAGAAACATCATTGAGA+GGG + chr7_1:70748248-70748267 Msa1035040:intron 30.0%
! GTTTTTCTAAGCTCCTAATA+TGG + chr7_1:70748376-70748395 Msa1035040:intron 30.0%
TCCTAATATGGCTTACAAAT+GGG + chr7_1:70748388-70748407 Msa1035040:intron 30.0%
TAAAGAGAACAAACCAAACA+CGG - chr7_1:70748501-70748520 None:intergenic 30.0%
! CTAGTTGTAGTTTTTGCAAT+TGG + chr7_1:70748545-70748564 Msa1035040:intron 30.0%
AATCTGTTTAACAACATCTG+GGG - chr7_1:70749150-70749169 None:intergenic 30.0%
GTAATCTGTTTAACAACATC+TGG - chr7_1:70749152-70749171 None:intergenic 30.0%
!! TTTGTTATTTGGGACAAAGT+TGG + chr7_1:70749292-70749311 Msa1035040:three_prime_UTR 30.0%
!!! GGCTTGTTTTCTTTAGTTTT+CGG + chr7_1:70749313-70749332 Msa1035040:three_prime_UTR 30.0%
!!! TTTTCTTTAGTTTTCGGTTC+TGG + chr7_1:70749319-70749338 Msa1035040:three_prime_UTR 30.0%
ATCAAGCATAAAGTTTCTCA+AGG - chr7_1:70749358-70749377 None:intergenic 30.0%
CACTGAGTGAATAGGTATTA+GGG - chr7_1:70747801-70747820 None:intergenic 35.0%
ACACTGAGTGAATAGGTATT+AGG - chr7_1:70747802-70747821 None:intergenic 35.0%
AATCTTATGGATCTGCTCTT+GGG - chr7_1:70747891-70747910 None:intergenic 35.0%
TAATCTTATGGATCTGCTCT+TGG - chr7_1:70747892-70747911 None:intergenic 35.0%
AAGAGCAGATCCATAAGATT+AGG + chr7_1:70747891-70747910 Msa1035040:CDS 35.0%
AAAGGGTGATCCTAATCTTA+TGG - chr7_1:70747904-70747923 None:intergenic 35.0%
CATGTCAAAAATCTCGAGAA+GGG + chr7_1:70747932-70747951 Msa1035040:CDS 35.0%
GATAAGCATCTTAGAGTGAA+GGG + chr7_1:70748071-70748090 Msa1035040:CDS 35.0%
GTGATATGAAGAACCTTAGT+AGG - chr7_1:70748110-70748129 None:intergenic 35.0%
AATGAAATACCTTCTCCACA+AGG - chr7_1:70748146-70748165 None:intergenic 35.0%
CTCCTAATATGGCTTACAAA+TGG + chr7_1:70748387-70748406 Msa1035040:intron 35.0%
ACCCATTTGTAAGCCATATT+AGG - chr7_1:70748392-70748411 None:intergenic 35.0%
GCATCTAAATTTCCATAAGC+AGG - chr7_1:70748441-70748460 None:intergenic 35.0%
AAATACGATATAGCCGTGTT+TGG + chr7_1:70748485-70748504 Msa1035040:intron 35.0%
!!! TTTTTGCAATTGGTTTGTGC+TGG + chr7_1:70748555-70748574 Msa1035040:intron 35.0%
!! AATTTTGAAGGACTCGACTA+CGG + chr7_1:70748769-70748788 Msa1035040:intron 35.0%
TGTGCATAGAAGAGAATCAA+CGG - chr7_1:70748848-70748867 None:intergenic 35.0%
!!! CTTGATAGTGCTATGTTTTC+TGG + chr7_1:70748954-70748973 Msa1035040:intron 35.0%
ATCCTACACTTCAATGACAA+TGG - chr7_1:70748997-70749016 None:intergenic 35.0%
ATGACCTTACTTCTTGTTAC+AGG + chr7_1:70749062-70749081 Msa1035040:intron 35.0%
TTAAGATCAAGCATCTGCAA+TGG - chr7_1:70749213-70749232 None:intergenic 35.0%
CACTGAGTGAATAGGTATTA+GGG - chr7_1:70747801-70747820 None:intergenic 35.0%
ACACTGAGTGAATAGGTATT+AGG - chr7_1:70747802-70747821 None:intergenic 35.0%
AATCTTATGGATCTGCTCTT+GGG - chr7_1:70747891-70747910 None:intergenic 35.0%
TAATCTTATGGATCTGCTCT+TGG - chr7_1:70747892-70747911 None:intergenic 35.0%
AAGAGCAGATCCATAAGATT+AGG + chr7_1:70747891-70747910 Msa1035040:CDS 35.0%
AAAGGGTGATCCTAATCTTA+TGG - chr7_1:70747904-70747923 None:intergenic 35.0%
CATGTCAAAAATCTCGAGAA+GGG + chr7_1:70747932-70747951 Msa1035040:CDS 35.0%
GATAAGCATCTTAGAGTGAA+GGG + chr7_1:70748071-70748090 Msa1035040:CDS 35.0%
GTGATATGAAGAACCTTAGT+AGG - chr7_1:70748110-70748129 None:intergenic 35.0%
AATGAAATACCTTCTCCACA+AGG - chr7_1:70748146-70748165 None:intergenic 35.0%
CTCCTAATATGGCTTACAAA+TGG + chr7_1:70748387-70748406 Msa1035040:intron 35.0%
ACCCATTTGTAAGCCATATT+AGG - chr7_1:70748392-70748411 None:intergenic 35.0%
GCATCTAAATTTCCATAAGC+AGG - chr7_1:70748441-70748460 None:intergenic 35.0%
AAATACGATATAGCCGTGTT+TGG + chr7_1:70748485-70748504 Msa1035040:intron 35.0%
!!! TTTTTGCAATTGGTTTGTGC+TGG + chr7_1:70748555-70748574 Msa1035040:intron 35.0%
!! AATTTTGAAGGACTCGACTA+CGG + chr7_1:70748769-70748788 Msa1035040:intron 35.0%
TGTGCATAGAAGAGAATCAA+CGG - chr7_1:70748848-70748867 None:intergenic 35.0%
!!! CTTGATAGTGCTATGTTTTC+TGG + chr7_1:70748954-70748973 Msa1035040:intron 35.0%
ATCCTACACTTCAATGACAA+TGG - chr7_1:70748997-70749016 None:intergenic 35.0%
ATGACCTTACTTCTTGTTAC+AGG + chr7_1:70749062-70749081 Msa1035040:intron 35.0%
TTAAGATCAAGCATCTGCAA+TGG - chr7_1:70749213-70749232 None:intergenic 35.0%
CAAAGGAGACAGAAATCGAA+AGG - chr7_1:70747761-70747780 None:intergenic 40.0%
TTTGACATGCTTGGAGGAAA+GGG - chr7_1:70747921-70747940 None:intergenic 40.0%
! TTTTGACATGCTTGGAGGAA+AGG - chr7_1:70747922-70747941 None:intergenic 40.0%
! GAGATTTTTGACATGCTTGG+AGG - chr7_1:70747927-70747946 None:intergenic 40.0%
! CTCGAGATTTTTGACATGCT+TGG - chr7_1:70747930-70747949 None:intergenic 40.0%
GCATGTCAAAAATCTCGAGA+AGG + chr7_1:70747931-70747950 Msa1035040:CDS 40.0%
GGATAAGCATCTTAGAGTGA+AGG + chr7_1:70748070-70748089 Msa1035040:CDS 40.0%
AGGTTCTTCATATCACTACC+AGG + chr7_1:70748114-70748133 Msa1035040:CDS 40.0%
TGAGAGGGAACTGTTGAAAT+AGG + chr7_1:70748263-70748282 Msa1035040:intron 40.0%
CGTATGCCAATTAAGGTTGT+AGG - chr7_1:70748623-70748642 None:intergenic 40.0%
TCTCACACGTATGCCAATTA+AGG - chr7_1:70748630-70748649 None:intergenic 40.0%
TACGTGTGAGAGTAAAAGGA+AGG + chr7_1:70748639-70748658 Msa1035040:intron 40.0%
!! ATTTTGAAGGACTCGACTAC+GGG + chr7_1:70748770-70748789 Msa1035040:intron 40.0%
TGATTCTCTTCTATGCACAC+TGG + chr7_1:70748849-70748868 Msa1035040:intron 40.0%
TCAAGTATTCAGCAGAGGTT+TGG - chr7_1:70748939-70748958 None:intergenic 40.0%
CACTATCAAGTATTCAGCAG+AGG - chr7_1:70748944-70748963 None:intergenic 40.0%
AGCCATTGTCATTGAAGTGT+AGG + chr7_1:70748992-70749011 Msa1035040:intron 40.0%
GGTACCTGTAACAAGAAGTA+AGG - chr7_1:70749069-70749088 None:intergenic 40.0%
TTCAAATCTATCCCAGGTGT+TGG - chr7_1:70749090-70749109 None:intergenic 40.0%
CAAAGGAGACAGAAATCGAA+AGG - chr7_1:70747761-70747780 None:intergenic 40.0%
TTTGACATGCTTGGAGGAAA+GGG - chr7_1:70747921-70747940 None:intergenic 40.0%
! TTTTGACATGCTTGGAGGAA+AGG - chr7_1:70747922-70747941 None:intergenic 40.0%
! GAGATTTTTGACATGCTTGG+AGG - chr7_1:70747927-70747946 None:intergenic 40.0%
! CTCGAGATTTTTGACATGCT+TGG - chr7_1:70747930-70747949 None:intergenic 40.0%
GCATGTCAAAAATCTCGAGA+AGG + chr7_1:70747931-70747950 Msa1035040:CDS 40.0%
GGATAAGCATCTTAGAGTGA+AGG + chr7_1:70748070-70748089 Msa1035040:CDS 40.0%
AGGTTCTTCATATCACTACC+AGG + chr7_1:70748114-70748133 Msa1035040:CDS 40.0%
TGAGAGGGAACTGTTGAAAT+AGG + chr7_1:70748263-70748282 Msa1035040:intron 40.0%
CGTATGCCAATTAAGGTTGT+AGG - chr7_1:70748623-70748642 None:intergenic 40.0%
TCTCACACGTATGCCAATTA+AGG - chr7_1:70748630-70748649 None:intergenic 40.0%
TACGTGTGAGAGTAAAAGGA+AGG + chr7_1:70748639-70748658 Msa1035040:intron 40.0%
!! ATTTTGAAGGACTCGACTAC+GGG + chr7_1:70748770-70748789 Msa1035040:intron 40.0%
TGATTCTCTTCTATGCACAC+TGG + chr7_1:70748849-70748868 Msa1035040:intron 40.0%
TCAAGTATTCAGCAGAGGTT+TGG - chr7_1:70748939-70748958 None:intergenic 40.0%
CACTATCAAGTATTCAGCAG+AGG - chr7_1:70748944-70748963 None:intergenic 40.0%
AGCCATTGTCATTGAAGTGT+AGG + chr7_1:70748992-70749011 Msa1035040:intron 40.0%
GGTACCTGTAACAAGAAGTA+AGG - chr7_1:70749069-70749088 None:intergenic 40.0%
TTCAAATCTATCCCAGGTGT+TGG - chr7_1:70749090-70749109 None:intergenic 40.0%
GGAGACAGAAATCGAAAGGA+AGG - chr7_1:70747757-70747776 None:intergenic 45.0%
!! GTTTGTGCTGATTTGGTTCG+TGG + chr7_1:70748041-70748060 Msa1035040:intron 45.0%
TTAGAGTGAAGGGTCCTGTT+AGG + chr7_1:70748081-70748100 Msa1035040:CDS 45.0%
TCCTGTTAGGATGCCTACTA+AGG + chr7_1:70748094-70748113 Msa1035040:CDS 45.0%
ACCTTAGTAGGCATCCTAAC+AGG - chr7_1:70748098-70748117 None:intergenic 45.0%
!! CCATAAGCAGGCTAGTTTCA+GGG - chr7_1:70748429-70748448 None:intergenic 45.0%
!! TCCATAAGCAGGCTAGTTTC+AGG - chr7_1:70748430-70748449 None:intergenic 45.0%
GGCATACGTGTGAGAGTAAA+AGG + chr7_1:70748635-70748654 Msa1035040:intron 45.0%
!! CGACTACGGGTTGGAATTAA+TGG + chr7_1:70748783-70748802 Msa1035040:intron 45.0%
! TTCTATGCACACTGGTTGCA+AGG + chr7_1:70748857-70748876 Msa1035040:intron 45.0%
TTGTTACAGGTACCAACACC+TGG + chr7_1:70749075-70749094 Msa1035040:intron 45.0%
TGTTACAGGTACCAACACCT+GGG + chr7_1:70749076-70749095 Msa1035040:intron 45.0%
ACGGAGTTCAAATCTATCCC+AGG - chr7_1:70749096-70749115 None:intergenic 45.0%
CGATAACTCTCTTGTGCACA+CGG - chr7_1:70749115-70749134 None:intergenic 45.0%
GGAGACAGAAATCGAAAGGA+AGG - chr7_1:70747757-70747776 None:intergenic 45.0%
!! GTTTGTGCTGATTTGGTTCG+TGG + chr7_1:70748041-70748060 Msa1035040:intron 45.0%
TTAGAGTGAAGGGTCCTGTT+AGG + chr7_1:70748081-70748100 Msa1035040:CDS 45.0%
TCCTGTTAGGATGCCTACTA+AGG + chr7_1:70748094-70748113 Msa1035040:CDS 45.0%
ACCTTAGTAGGCATCCTAAC+AGG - chr7_1:70748098-70748117 None:intergenic 45.0%
!! CCATAAGCAGGCTAGTTTCA+GGG - chr7_1:70748429-70748448 None:intergenic 45.0%
!! TCCATAAGCAGGCTAGTTTC+AGG - chr7_1:70748430-70748449 None:intergenic 45.0%
GGCATACGTGTGAGAGTAAA+AGG + chr7_1:70748635-70748654 Msa1035040:intron 45.0%
!! CGACTACGGGTTGGAATTAA+TGG + chr7_1:70748783-70748802 Msa1035040:intron 45.0%
! TTCTATGCACACTGGTTGCA+AGG + chr7_1:70748857-70748876 Msa1035040:intron 45.0%
TTGTTACAGGTACCAACACC+TGG + chr7_1:70749075-70749094 Msa1035040:intron 45.0%
TGTTACAGGTACCAACACCT+GGG + chr7_1:70749076-70749095 Msa1035040:intron 45.0%
ACGGAGTTCAAATCTATCCC+AGG - chr7_1:70749096-70749115 None:intergenic 45.0%
CGATAACTCTCTTGTGCACA+CGG - chr7_1:70749115-70749134 None:intergenic 45.0%
CTCCTTTGATTCACCAGCTG+CGG + chr7_1:70747773-70747792 Msa1035040:five_prime_UTR 50.0%
TCTTGGGATTCCTCCAAACC+AGG - chr7_1:70747875-70747894 None:intergenic 50.0%
!! TGATTTGGTTCGTGGCGCTA+AGG + chr7_1:70748049-70748068 Msa1035040:CDS 50.0%
ACTACCAGGAAGACTCCTTG+TGG + chr7_1:70748128-70748147 Msa1035040:CDS 50.0%
TTCTCCACAAGGAGTCTTCC+TGG - chr7_1:70748135-70748154 None:intergenic 50.0%
AGGAAGACTCCTTGTGGAGA+AGG + chr7_1:70748134-70748153 Msa1035040:CDS 50.0%
! CCCTGAAACTAGCCTGCTTA+TGG + chr7_1:70748426-70748445 Msa1035040:intron 50.0%
CAACATCTGGGGAACTGTAG+AGG - chr7_1:70749139-70749158 None:intergenic 50.0%
ACCTCTATCACCATCGAACC+TGG + chr7_1:70749170-70749189 Msa1035040:CDS 50.0%
ACCAGGTTCGATGGTGATAG+AGG - chr7_1:70749174-70749193 None:intergenic 50.0%
CTCCTTTGATTCACCAGCTG+CGG + chr7_1:70747773-70747792 Msa1035040:five_prime_UTR 50.0%
TCTTGGGATTCCTCCAAACC+AGG - chr7_1:70747875-70747894 None:intergenic 50.0%
!! TGATTTGGTTCGTGGCGCTA+AGG + chr7_1:70748049-70748068 Msa1035040:CDS 50.0%
ACTACCAGGAAGACTCCTTG+TGG + chr7_1:70748128-70748147 Msa1035040:CDS 50.0%
TTCTCCACAAGGAGTCTTCC+TGG - chr7_1:70748135-70748154 None:intergenic 50.0%
AGGAAGACTCCTTGTGGAGA+AGG + chr7_1:70748134-70748153 Msa1035040:CDS 50.0%
! CCCTGAAACTAGCCTGCTTA+TGG + chr7_1:70748426-70748445 Msa1035040:intron 50.0%
CAACATCTGGGGAACTGTAG+AGG - chr7_1:70749139-70749158 None:intergenic 50.0%
ACCTCTATCACCATCGAACC+TGG + chr7_1:70749170-70749189 Msa1035040:CDS 50.0%
ACCAGGTTCGATGGTGATAG+AGG - chr7_1:70749174-70749193 None:intergenic 50.0%
GAAACCCACCAAGCCTGGTT+TGG + chr7_1:70747859-70747878 Msa1035040:CDS 55.0%
! TCCTCCAAACCAGGCTTGGT+GGG - chr7_1:70747866-70747885 None:intergenic 55.0%
TTCCTCCAAACCAGGCTTGG+TGG - chr7_1:70747867-70747886 None:intergenic 55.0%
GGATTCCTCCAAACCAGGCT+TGG - chr7_1:70747870-70747889 None:intergenic 55.0%
TGAAGGACTCGACTACGGGT+TGG + chr7_1:70748774-70748793 Msa1035040:intron 55.0%
AACCTCGACACCAGGTTCGA+TGG - chr7_1:70749183-70749202 None:intergenic 55.0%
GTAACCTCAACCTCGACACC+AGG - chr7_1:70749191-70749210 None:intergenic 55.0%
GAAACCCACCAAGCCTGGTT+TGG + chr7_1:70747859-70747878 Msa1035040:CDS 55.0%
! TCCTCCAAACCAGGCTTGGT+GGG - chr7_1:70747866-70747885 None:intergenic 55.0%
TTCCTCCAAACCAGGCTTGG+TGG - chr7_1:70747867-70747886 None:intergenic 55.0%
GGATTCCTCCAAACCAGGCT+TGG - chr7_1:70747870-70747889 None:intergenic 55.0%
TGAAGGACTCGACTACGGGT+TGG + chr7_1:70748774-70748793 Msa1035040:intron 55.0%
AACCTCGACACCAGGTTCGA+TGG - chr7_1:70749183-70749202 None:intergenic 55.0%
GTAACCTCAACCTCGACACC+AGG - chr7_1:70749191-70749210 None:intergenic 55.0%
CGCCGCAGCTGGTGAATCAA+AGG - chr7_1:70747778-70747797 None:intergenic 60.0%
GCGATGAAACCCACCAAGCC+TGG + chr7_1:70747854-70747873 Msa1035040:CDS 60.0%
!! ACCCACCAAGCCTGGTTTGG+AGG + chr7_1:70747862-70747881 Msa1035040:CDS 60.0%
! CACCATCGAACCTGGTGTCG+AGG + chr7_1:70749178-70749197 Msa1035040:CDS 60.0%
! CGAACCTGGTGTCGAGGTTG+AGG + chr7_1:70749184-70749203 Msa1035040:CDS 60.0%
CGCCGCAGCTGGTGAATCAA+AGG - chr7_1:70747778-70747797 None:intergenic 60.0%
GCGATGAAACCCACCAAGCC+TGG + chr7_1:70747854-70747873 Msa1035040:CDS 60.0%
!! ACCCACCAAGCCTGGTTTGG+AGG + chr7_1:70747862-70747881 Msa1035040:CDS 60.0%
! CACCATCGAACCTGGTGTCG+AGG + chr7_1:70749178-70749197 Msa1035040:CDS 60.0%
! CGAACCTGGTGTCGAGGTTG+AGG + chr7_1:70749184-70749203 Msa1035040:CDS 60.0%
!! AGGTATTAGGGCGCCGCAGC+TGG - chr7_1:70747789-70747808 None:intergenic 65.0%
!! AGGTATTAGGGCGCCGCAGC+TGG - chr7_1:70747789-70747808 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70747745 70749483 70747745 ID=Msa1035040;Name=Msa1035040
chr7_1 mRNA 70747745 70749483 70747745 ID=Msa1035040-mRNA-1;Parent=Msa1035040;Name=Msa1035040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=97|1|1|1|1|1|3|257|122
chr7_1 exon 70747745 70747953 70747745 ID=Msa1035040-mRNA-1:exon:16951;Parent=Msa1035040-mRNA-1
chr7_1 exon 70748042 70748155 70748042 ID=Msa1035040-mRNA-1:exon:16952;Parent=Msa1035040-mRNA-1
chr7_1 exon 70749084 70749483 70749084 ID=Msa1035040-mRNA-1:exon:16953;Parent=Msa1035040-mRNA-1
chr7_1 five_prime_UTR 70747745 70747841 70747745 ID=Msa1035040-mRNA-1:five_prime_utr;Parent=Msa1035040-mRNA-1
chr7_1 CDS 70747842 70747953 70747842 ID=Msa1035040-mRNA-1:cds;Parent=Msa1035040-mRNA-1
chr7_1 CDS 70748042 70748155 70748042 ID=Msa1035040-mRNA-1:cds;Parent=Msa1035040-mRNA-1
chr7_1 CDS 70749084 70749226 70749084 ID=Msa1035040-mRNA-1:cds;Parent=Msa1035040-mRNA-1
chr7_1 three_prime_UTR 70749227 70749483 70749227 ID=Msa1035040-mRNA-1:three_prime_utr;Parent=Msa1035040-mRNA-1
Gene Sequence

>Msa1035040

ATGGCGTACGCTGCGATGAAACCCACCAAGCCTGGTTTGGAGGAATCCCAAGAGCAGATCCATAAGATTAGGATCACCCTTTCCTCCAAGCATGTCAAAAATCTCGAGAAGGTTTGTGCTGATTTGGTTCGTGGCGCTAAGGATAAGCATCTTAGAGTGAAGGGTCCTGTTAGGATGCCTACTAAGGTTCTTCATATCACTACCAGGAAGACTCCTTGTGGAGAAGGTACCAACACCTGGGATAGATTTGAACTCCGTGTGCACAAGAGAGTTATCGACCTCTACAGTTCCCCAGATGTTGTTAAACAGATTACCTCTATCACCATCGAACCTGGTGTCGAGGTTGAGGTTACCATTGCAGATGCTTGA
Protein sequence

>Msa1035040

MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA*