Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223190 | AES67610.1 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223190 | G7IHP7 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0223190 | 0.825433 | 4.700678e-54 | -8.615850e-47 |
| Msa0041780 | Msa0223190 | 0.821142 | 4.724871e-53 | -8.615850e-47 |
| Msa0045620 | Msa0223190 | -0.820926 | 5.299344e-53 | -8.615850e-47 |
| Msa0050320 | Msa0223190 | 0.803817 | 2.908783e-49 | -8.615850e-47 |
| Msa0085580 | Msa0223190 | 0.814576 | 1.435706e-51 | -8.615850e-47 |
| Msa0091090 | Msa0223190 | 0.821723 | 3.470184e-53 | -8.615850e-47 |
| Msa0096570 | Msa0223190 | 0.804783 | 1.830294e-49 | -8.615850e-47 |
| Msa0117300 | Msa0223190 | 0.819099 | 1.387673e-52 | -8.615850e-47 |
| Msa0154720 | Msa0223190 | 0.802988 | 4.318880e-49 | -8.615850e-47 |
| Msa0160650 | Msa0223190 | 0.836288 | 1.021697e-56 | -8.615850e-47 |
| Msa0183200 | Msa0223190 | 0.808842 | 2.538748e-50 | -8.615850e-47 |
| Msa0188500 | Msa0223190 | 0.880184 | 6.764095e-70 | -8.615850e-47 |
| Msa0200870 | Msa0223190 | 0.803123 | 4.051275e-49 | -8.615850e-47 |
| Msa0220410 | Msa0223190 | 0.802658 | 5.053200e-49 | -8.615850e-47 |
| Msa0223190 | Msa0225880 | 0.830975 | 2.169790e-55 | -8.615850e-47 |
| Msa0223190 | Msa0229750 | 0.806717 | 7.181327e-50 | -8.615850e-47 |
| Msa0223190 | Msa0230980 | 0.863829 | 1.882714e-64 | -8.615850e-47 |
| Msa0223190 | Msa0243820 | 0.812792 | 3.547574e-51 | -8.615850e-47 |
| Msa0223190 | Msa0256410 | 0.813739 | 2.197454e-51 | -8.615850e-47 |
| Msa0223190 | Msa0260470 | 0.829842 | 4.104335e-55 | -8.615850e-47 |
| Msa0223190 | Msa0264240 | 0.822540 | 2.243202e-53 | -8.615850e-47 |
| Msa0223190 | Msa0264420 | 0.989354 | 9.227225e-178 | -8.615850e-47 |
| Msa0223190 | Msa0270460 | 0.863708 | 2.052852e-64 | -8.615850e-47 |
| Msa0223190 | Msa0274950 | -0.811805 | 5.824656e-51 | -8.615850e-47 |
| Msa0223190 | Msa0302310 | 0.985381 | 2.163276e-163 | -8.615850e-47 |
| Msa0223190 | Msa0304110 | 0.822870 | 1.879480e-53 | -8.615850e-47 |
| Msa0223190 | Msa0309060 | 0.850437 | 1.699179e-60 | -8.615850e-47 |
| Msa0223190 | Msa0339560 | 0.839491 | 1.535531e-57 | -8.615850e-47 |
| Msa0223190 | Msa0339670 | 0.990470 | 8.729887e-183 | -8.615850e-47 |
| Msa0223190 | Msa0341190 | 0.813469 | 2.519227e-51 | -8.615850e-47 |
| Msa0223190 | Msa0352640 | 0.829791 | 4.224925e-55 | -8.615850e-47 |
| Msa0223190 | Msa0364010 | 0.840403 | 8.882631e-58 | -8.615850e-47 |
| Msa0223190 | Msa0372990 | 0.817897 | 2.598053e-52 | -8.615850e-47 |
| Msa0223190 | Msa0378670 | 0.821153 | 4.696538e-53 | -8.615850e-47 |
| Msa0223190 | Msa0378700 | 0.820673 | 6.056150e-53 | -8.615850e-47 |
| Msa0223190 | Msa0379500 | 0.803266 | 3.784876e-49 | -8.615850e-47 |
| Msa0223190 | Msa0380590 | -0.802656 | 5.059250e-49 | -8.615850e-47 |
| Msa0223190 | Msa0403720 | 0.844615 | 6.774773e-59 | -8.615850e-47 |
| Msa0223190 | Msa0404180 | 0.812612 | 3.883300e-51 | -8.615850e-47 |
| Msa0223190 | Msa0408160 | 0.810880 | 9.249908e-51 | -8.615850e-47 |
| Msa0223190 | Msa0416390 | -0.815109 | 1.093868e-51 | -8.615850e-47 |
| Msa0223190 | Msa0421390 | 0.836068 | 1.161855e-56 | -8.615850e-47 |
| Msa0223190 | Msa0428330 | 0.810699 | 1.012499e-50 | -8.615850e-47 |
| Msa0223190 | Msa0431940 | 0.827745 | 1.320024e-54 | -8.615850e-47 |
| Msa0223190 | Msa0436600 | 0.826997 | 1.994614e-54 | -8.615850e-47 |
| Msa0223190 | Msa0436610 | 0.808245 | 3.405069e-50 | -8.615850e-47 |
| Msa0223190 | Msa0448400 | 0.831292 | 1.813224e-55 | -8.615850e-47 |
| Msa0223190 | Msa0456480 | 0.819391 | 1.190163e-52 | -8.615850e-47 |
| Msa0223190 | Msa0462980 | -0.831129 | 1.987848e-55 | -8.615850e-47 |
| Msa0223190 | Msa0481050 | 0.800823 | 1.202747e-48 | -8.615850e-47 |
| Msa0223190 | Msa0496460 | 0.852350 | 4.890310e-61 | -8.615850e-47 |
| Msa0223190 | Msa0496470 | 0.844844 | 5.878384e-59 | -8.615850e-47 |
| Msa0223190 | Msa0496570 | 0.851968 | 6.278281e-61 | -8.615850e-47 |
| Msa0223190 | Msa0500490 | 0.803483 | 3.411662e-49 | -8.615850e-47 |
| Msa0223190 | Msa0508580 | -0.829355 | 5.392393e-55 | -8.615850e-47 |
| Msa0223190 | Msa0520810 | 0.836041 | 1.180224e-56 | -8.615850e-47 |
| Msa0223190 | Msa0521940 | -0.820289 | 7.419114e-53 | -8.615850e-47 |
| Msa0223190 | Msa0546370 | 0.842727 | 2.167708e-58 | -8.615850e-47 |
| Msa0223190 | Msa0547200 | -0.810817 | 9.545222e-51 | -8.615850e-47 |
| Msa0223190 | Msa0549330 | 0.818998 | 1.462719e-52 | -8.615850e-47 |
| Msa0223190 | Msa0555510 | 0.804942 | 1.695751e-49 | -8.615850e-47 |
| Msa0223190 | Msa0560370 | 0.819309 | 1.243002e-52 | -8.615850e-47 |
| Msa0223190 | Msa0580540 | 0.817747 | 2.809453e-52 | -8.615850e-47 |
| Msa0223190 | Msa0601920 | -0.810457 | 1.141948e-50 | -8.615850e-47 |
| Msa0223190 | Msa0604640 | 0.840530 | 8.226047e-58 | -8.615850e-47 |
| Msa0223190 | Msa0608940 | 0.812016 | 5.240930e-51 | -8.615850e-47 |
| Msa0223190 | Msa0621780 | 0.809500 | 1.835052e-50 | -8.615850e-47 |
| Msa0223190 | Msa0623310 | -0.816740 | 4.733228e-52 | -8.615850e-47 |
| Msa0223190 | Msa0623360 | 0.843687 | 1.202295e-58 | -8.615850e-47 |
| Msa0223190 | Msa0630850 | 0.854106 | 1.535224e-61 | -8.615850e-47 |
| Msa0223190 | Msa0643020 | -0.823215 | 1.561572e-53 | -8.615850e-47 |
| Msa0223190 | Msa0655610 | 0.802901 | 4.501757e-49 | -8.615850e-47 |
| Msa0223190 | Msa0681880 | 0.849249 | 3.649587e-60 | -8.615850e-47 |
| Msa0223190 | Msa0682730 | -0.800842 | 1.192112e-48 | -8.615850e-47 |
| Msa0223190 | Msa0685390 | 0.803658 | 3.138036e-49 | -8.615850e-47 |
| Msa0223190 | Msa0697600 | 0.803647 | 3.155059e-49 | -8.615850e-47 |
| Msa0223190 | Msa0702310 | 0.810299 | 1.234875e-50 | -8.615850e-47 |
| Msa0223190 | Msa0702620 | 0.804040 | 2.614528e-49 | -8.615850e-47 |
| Msa0223190 | Msa0704780 | 0.877166 | 7.810998e-69 | -8.615850e-47 |
| Msa0223190 | Msa0705050 | 0.841936 | 3.512218e-58 | -8.615850e-47 |
| Msa0223190 | Msa0714060 | 0.825103 | 5.625672e-54 | -8.615850e-47 |
| Msa0223190 | Msa0714200 | 0.823463 | 1.366722e-53 | -8.615850e-47 |
| Msa0223190 | Msa0756440 | 0.847210 | 1.335460e-59 | -8.615850e-47 |
| Msa0223190 | Msa0770020 | 0.804265 | 2.346756e-49 | -8.615850e-47 |
| Msa0223190 | Msa0775420 | 0.823619 | 1.256528e-53 | -8.615850e-47 |
| Msa0223190 | Msa0795710 | 0.810024 | 1.415675e-50 | -8.615850e-47 |
| Msa0223190 | Msa0807980 | 0.807674 | 4.504786e-50 | -8.615850e-47 |
| Msa0223190 | Msa0812800 | 0.818228 | 2.187044e-52 | -8.615850e-47 |
| Msa0223190 | Msa0813630 | 0.815038 | 1.134698e-51 | -8.615850e-47 |
| Msa0223190 | Msa0834200 | 0.826289 | 2.943105e-54 | -8.615850e-47 |
| Msa0223190 | Msa0834240 | 0.829864 | 4.055337e-55 | -8.615850e-47 |
| Msa0223190 | Msa0835550 | 0.854792 | 9.719773e-62 | -8.615850e-47 |
| Msa0223190 | Msa0846300 | 0.803690 | 3.091176e-49 | -8.615850e-47 |
| Msa0223190 | Msa0861480 | 0.823522 | 1.323579e-53 | -8.615850e-47 |
| Msa0223190 | Msa0861560 | 0.829084 | 6.272984e-55 | -8.615850e-47 |
| Msa0223190 | Msa0871310 | 0.817406 | 3.352315e-52 | -8.615850e-47 |
| Msa0223190 | Msa0899730 | 0.802152 | 6.424974e-49 | -8.615850e-47 |
| Msa0223190 | Msa0927890 | 0.806070 | 9.833359e-50 | -8.615850e-47 |
| Msa0223190 | Msa0967250 | 0.800661 | 1.298283e-48 | -8.615850e-47 |
| Msa0223190 | Msa0975560 | 0.828817 | 7.278809e-55 | -8.615850e-47 |
| Msa0223190 | Msa0986560 | 0.820948 | 5.236551e-53 | -8.615850e-47 |
| Msa0223190 | Msa0998940 | 0.802265 | 6.090248e-49 | -8.615850e-47 |
| Msa0223190 | Msa0999590 | 0.839472 | 1.552512e-57 | -8.615850e-47 |
| Msa0223190 | Msa1026710 | -0.802836 | 4.644191e-49 | -8.615850e-47 |
| Msa0223190 | Msa1031530 | 0.804673 | 1.929865e-49 | -8.615850e-47 |
| Msa0223190 | Msa1035040 | -0.806418 | 8.307352e-50 | -8.615850e-47 |
| Msa0223190 | Msa1038110 | 0.836262 | 1.037490e-56 | -8.615850e-47 |
| Msa0223190 | Msa1052030 | 0.803574 | 3.267080e-49 | -8.615850e-47 |
| Msa0223190 | Msa1071310 | 0.828946 | 6.777035e-55 | -8.615850e-47 |
| Msa0223190 | Msa1081530 | 0.801084 | 1.064045e-48 | -8.615850e-47 |
| Msa0223190 | Msa1101300 | 0.802570 | 5.269030e-49 | -8.615850e-47 |
| Msa0223190 | Msa1101610 | 0.809073 | 2.266173e-50 | -8.615850e-47 |
| Msa0223190 | Msa1129660 | 0.831012 | 2.123951e-55 | -8.615850e-47 |
| Msa0223190 | Msa1188820 | 0.811900 | 5.554385e-51 | -8.615850e-47 |
| Msa0223190 | Msa1199580 | 0.838031 | 3.660196e-57 | -8.615850e-47 |
| Msa0223190 | Msa1211390 | 0.801763 | 7.723077e-49 | -8.615850e-47 |
| Msa0223190 | Msa1216700 | 0.800136 | 1.660194e-48 | -8.615850e-47 |
| Msa0223190 | Msa1223510 | 0.808891 | 2.478092e-50 | -8.615850e-47 |
| Msa0223190 | Msa1229770 | 0.809953 | 1.466160e-50 | -8.615850e-47 |
| Msa0223190 | Msa1237260 | 0.805763 | 1.140750e-49 | -8.615850e-47 |
| Msa0223190 | Msa1240060 | -0.857052 | 2.122764e-62 | -8.615850e-47 |
| Msa0223190 | Msa1242990 | 0.835779 | 1.375452e-56 | -8.615850e-47 |
| Msa0223190 | Msa1243630 | 0.803629 | 3.181766e-49 | -8.615850e-47 |
| Msa0223190 | Msa1244220 | 0.801498 | 8.751594e-49 | -8.615850e-47 |
| Msa0223190 | Msa1263610 | 0.839956 | 1.161634e-57 | -8.615850e-47 |
| Msa0223190 | Msa1264140 | 0.808973 | 2.380100e-50 | -8.615850e-47 |
| Msa0223190 | Msa1266720 | 0.830953 | 2.196198e-55 | -8.615850e-47 |
| Msa0223190 | Msa1281370 | -0.844808 | 6.008519e-59 | -8.615850e-47 |
| Msa0223190 | Msa1302780 | 0.815888 | 7.340616e-52 | -8.615850e-47 |
| Msa0223190 | Msa1306700 | 0.828840 | 7.188715e-55 | -8.615850e-47 |
| Msa0223190 | Msa1320530 | -0.863282 | 2.782022e-64 | -8.615850e-47 |
| Msa0223190 | Msa1323920 | 0.820241 | 7.611490e-53 | -8.615850e-47 |
| Msa0223190 | Msa1328630 | 0.839313 | 1.707021e-57 | -8.615850e-47 |
| Msa0223190 | Msa1328720 | 0.838378 | 2.980594e-57 | -8.615850e-47 |
| Msa0223190 | Msa1342400 | 0.847646 | 1.014036e-59 | -8.615850e-47 |
| Msa0223190 | Msa1343480 | 0.813069 | 3.084697e-51 | -8.615850e-47 |
| Msa0223190 | Msa1347610 | -0.809094 | 2.242371e-50 | -8.615850e-47 |
| Msa0223190 | Msa1353280 | 0.804214 | 2.404849e-49 | -8.615850e-47 |
| Msa0223190 | Msa1368660 | 0.826568 | 2.526301e-54 | -8.615850e-47 |
| Msa0223190 | Msa1370630 | 0.812105 | 5.010887e-51 | -8.615850e-47 |
| Msa0223190 | Msa1370930 | -0.802751 | 4.834294e-49 | -8.615850e-47 |
| Msa0223190 | Msa1371800 | -0.823443 | 1.381080e-53 | -8.615850e-47 |
| Msa0223190 | Msa1376310 | -0.821960 | 3.057445e-53 | -8.615850e-47 |
| Msa0223190 | Msa1388270 | 0.824556 | 7.569951e-54 | -8.615850e-47 |
| Msa0223190 | Msa1401000 | 0.833747 | 4.465902e-56 | -8.615850e-47 |
| Msa0223190 | Msa1403950 | 0.808250 | 3.396341e-50 | -8.615850e-47 |
| Msa0223190 | Msa1407200 | 0.829616 | 4.660407e-55 | -8.615850e-47 |
| Msa0223190 | Msa1409050 | 0.833284 | 5.824459e-56 | -8.615850e-47 |
| Msa0223190 | Msa1409760 | 0.831874 | 1.303438e-55 | -8.615850e-47 |
| Msa0223190 | Msa1427180 | 0.993506 | 3.273924e-200 | -8.615850e-47 |
| Msa0223190 | Msa1428560 | 0.807097 | 5.970948e-50 | -8.615850e-47 |
| Msa0223190 | Msa1446220 | 0.806319 | 8.713049e-50 | -8.615850e-47 |
| Msa0223190 | Msa1450630 | 0.808677 | 2.753523e-50 | -8.615850e-47 |
| Msa0223190 | Msa1452200 | 0.842674 | 2.238997e-58 | -8.615850e-47 |
| Msa0223190 | Msa1452790 | 0.805117 | 1.558643e-49 | -8.615850e-47 |
| Msa0223190 | Msa1459630 | 0.821679 | 3.552530e-53 | -8.615850e-47 |
| Msa0223190 | Msa1460970 | -0.824082 | 9.788530e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223190 | MtrunA17_Chr2g0328301 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Msa0223190 | MtrunA17_Chr4g0031681 | 46.667 | 210 | 47 | 5 | 96 | 286 | 261 | 424 | 3.45e-51 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223190 | AT5G59400.1 | 57.931 | 290 | 111 | 4 | 7 | 285 | 6 | 295 | 7.72e-117 | 338 |
| Msa0223190 | AT5G59400.2 | 54.237 | 236 | 97 | 4 | 7 | 231 | 6 | 241 | 1.14e-81 | 247 |
Find 81 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACGGTTGTTTCTGATTT+TGG | 0.096153 | 2_1:+72731344 | None:intergenic |
| TATCAAAATGCATTTAATTT+AGG | 0.174239 | 2_1:-72730132 | Msa0223190:CDS |
| TTTGGTAGACAATGGGTTTA+TGG | 0.211478 | 2_1:-72728911 | Msa0223190:CDS |
| ACACATGGCACTTTGCTCTA+TGG | 0.252132 | 2_1:+72729433 | None:intergenic |
| CTAACCTCTTCTCCACAATT+TGG | 0.256151 | 2_1:+72729837 | None:intergenic |
| CCATGTGTGTGAATGCTTAT+TGG | 0.266944 | 2_1:-72729418 | Msa0223190:CDS |
| AAAGAGCTTCAAGGGTTTCT+TGG | 0.284671 | 2_1:+72731226 | None:intergenic |
| CAGCAATCAACTTCAAGATT+TGG | 0.317400 | 2_1:-72728929 | Msa0223190:CDS |
| TAGACATTTAAATGTAATCT+TGG | 0.329454 | 2_1:-72728634 | Msa0223190:three_prime_UTR |
| CCGACAGTTAAAACACTTCA+AGG | 0.341879 | 2_1:-72729900 | Msa0223190:intron |
| TTACAGCTCCCTTTGGCGTC+TGG | 0.345446 | 2_1:+72728865 | None:intergenic |
| TTGGTAGACAATGGGTTTAT+GGG | 0.350926 | 2_1:-72728910 | Msa0223190:CDS |
| TTTCATCTTCCTTCTCTCTT+CGG | 0.366302 | 2_1:-72731320 | Msa0223190:CDS |
| GGTGAATACCATTATCTTCA+TGG | 0.383957 | 2_1:-72730064 | Msa0223190:CDS |
| CCTTGAAGCTCTTTATTCTC+AGG | 0.389886 | 2_1:-72731217 | Msa0223190:intron |
| CACATGGCACTTTGCTCTAT+GGG | 0.391842 | 2_1:+72729434 | None:intergenic |
| AAGAGCTTCAAGGGTTTCTT+GGG | 0.410172 | 2_1:+72731227 | None:intergenic |
| ACCGAGTGCCATGAAGATAA+TGG | 0.411246 | 2_1:+72730056 | None:intergenic |
| CCTGAGAATAAAGAGCTTCA+AGG | 0.416387 | 2_1:+72731217 | None:intergenic |
| AGAAAATTTACAGCTCCCTT+TGG | 0.418396 | 2_1:+72728858 | None:intergenic |
| GAATGACTTGGCAGCACTAA+AGG | 0.426467 | 2_1:-72729868 | Msa0223190:CDS |
| TCAAACATAAACCAACTTGT+AGG | 0.432749 | 2_1:-72728601 | None:intergenic |
| TTACCTGAGGCAGAAGCAAC+CGG | 0.444107 | 2_1:+72730018 | None:intergenic |
| AGCAACAGCAGCACCGCTTT+AGG | 0.444700 | 2_1:-72731390 | Msa0223190:CDS |
| TATCCGGTTGCTTCTGCCTC+AGG | 0.446058 | 2_1:-72730021 | Msa0223190:intron |
| TTGGTAGTTCAGCAATGGTT+GGG | 0.456189 | 2_1:-72730182 | Msa0223190:CDS |
| TTCAAGATTTGGTAGACAAT+GGG | 0.459540 | 2_1:-72728918 | Msa0223190:CDS |
| TTTGGTAGTTCAGCAATGGT+TGG | 0.463462 | 2_1:-72730183 | Msa0223190:CDS |
| GAGGACTTAGTTGTGATGCT+TGG | 0.477149 | 2_1:+72730094 | None:intergenic |
| TGCATTTGGTAGTTCAGCAA+TGG | 0.480534 | 2_1:-72730187 | Msa0223190:CDS |
| GGTAACAGTTGAAGCTTAAG+TGG | 0.481788 | 2_1:-72730849 | Msa0223190:intron |
| TTTAATTTAGGATTATCATA+TGG | 0.482685 | 2_1:-72730120 | Msa0223190:CDS |
| CTTCAAGATTTGGTAGACAA+TGG | 0.486758 | 2_1:-72728919 | Msa0223190:CDS |
| CAGTTGAAGCTTAAGTGGTA+TGG | 0.493314 | 2_1:-72730844 | Msa0223190:CDS |
| AGGGCAGGAAGATCTGTCTA+TGG | 0.493392 | 2_1:-72730244 | Msa0223190:intron |
| CTGAGAATAAAGAGCTTCAA+GGG | 0.499082 | 2_1:+72731218 | None:intergenic |
| ACCATTATCTTCATGGCACT+CGG | 0.500659 | 2_1:-72730057 | Msa0223190:CDS |
| GCGTAAATCCAGACGCCAAA+GGG | 0.509490 | 2_1:-72728873 | Msa0223190:CDS |
| AATGACTTGGCAGCACTAAA+GGG | 0.512532 | 2_1:-72729867 | Msa0223190:CDS |
| GGTCCATCTTGTATATATGT+TGG | 0.512587 | 2_1:-72731267 | Msa0223190:CDS |
| TTAAAACACTTCAAGGCTTG+TGG | 0.533051 | 2_1:-72729893 | Msa0223190:CDS |
| GGAGTTGATATGTCAATCAC+TGG | 0.535633 | 2_1:-72728717 | Msa0223190:three_prime_UTR |
| TTATGTTATTACCTCAACTT+CGG | 0.535679 | 2_1:+72729386 | None:intergenic |
| AGGATACTTCACAACTGACT+TGG | 0.542875 | 2_1:+72730819 | None:intergenic |
| TCTTGGGTGGCAGTTTGAAG+AGG | 0.543205 | 2_1:+72731243 | None:intergenic |
| AGGCTTGTGGAGGAATGACT+TGG | 0.547292 | 2_1:-72729880 | Msa0223190:CDS |
| GGAATTTCGCACCGAAGTTG+AGG | 0.547885 | 2_1:-72729397 | Msa0223190:intron |
| ACCTGCGACGACCGTCCTCA+TGG | 0.549456 | 2_1:-72731288 | Msa0223190:CDS |
| AACATGTCATCAACTATCAA+AGG | 0.550328 | 2_1:+72730969 | None:intergenic |
| GGCAGAGATCCGAAGAGAGA+AGG | 0.551019 | 2_1:+72731311 | None:intergenic |
| ACCATGAGGACGGTCGTCGC+AGG | 0.551432 | 2_1:+72731287 | None:intergenic |
| GCAGCACCGCTTTAGGTGGA+TGG | 0.553063 | 2_1:-72731383 | Msa0223190:CDS |
| GGACCAACATATATACAAGA+TGG | 0.557422 | 2_1:+72731264 | None:intergenic |
| AGCTTCAAGGGTTTCTTGGG+TGG | 0.559365 | 2_1:+72731230 | None:intergenic |
| ATGGTATTCACCATGAAAAG+AGG | 0.559608 | 2_1:+72730075 | None:intergenic |
| ATGTCCAAATTGTGGAGAAG+AGG | 0.561187 | 2_1:-72729841 | Msa0223190:intron |
| AAGGGTTCATGTCCAAATTG+TGG | 0.563160 | 2_1:-72729849 | Msa0223190:CDS |
| CACCGTCCATCCACCTAAAG+CGG | 0.577414 | 2_1:+72731377 | None:intergenic |
| CACCGCTTTAGGTGGATGGA+CGG | 0.580229 | 2_1:-72731379 | Msa0223190:CDS |
| ACACTTATAGTTAGCAAGGA+AGG | 0.581147 | 2_1:-72728738 | Msa0223190:three_prime_UTR |
| TGCGTAAATCCAGACGCCAA+AGG | 0.585411 | 2_1:-72728874 | Msa0223190:CDS |
| ACAAACACATATGAACATGT+TGG | 0.585580 | 2_1:-72731421 | Msa0223190:exon |
| TGCATTTGTAAGAACAGACA+AGG | 0.588695 | 2_1:-72729469 | Msa0223190:CDS |
| TTGTACACTTATAGTTAGCA+AGG | 0.588786 | 2_1:-72728742 | Msa0223190:three_prime_UTR |
| AAACACTTCAAGGCTTGTGG+AGG | 0.598739 | 2_1:-72729890 | Msa0223190:CDS |
| ATGAGGACGGTCGTCGCAGG+TGG | 0.602794 | 2_1:+72731290 | None:intergenic |
| AAGTTGATGCTGCAAAACAT+TGG | 0.603833 | 2_1:+72730159 | None:intergenic |
| AACAGCAGCACCGCTTTAGG+TGG | 0.608229 | 2_1:-72731387 | Msa0223190:CDS |
| CTAACTATAAGTGTACAAGT+TGG | 0.614393 | 2_1:+72728747 | None:intergenic |
| ATCCTCGTTGCAGTATCAGA+AGG | 0.615303 | 2_1:-72730801 | Msa0223190:CDS |
| CCAATAAGCATTCACACACA+TGG | 0.617576 | 2_1:+72729418 | None:intergenic |
| AATCACCTCAGCATCAGCAT+AGG | 0.620614 | 2_1:+72730771 | None:intergenic |
| TGACATGTTTGATAGAGTAG+AGG | 0.624434 | 2_1:-72730955 | Msa0223190:intron |
| GCAAGGGATGCATATTACAA+AGG | 0.629849 | 2_1:-72730996 | Msa0223190:CDS |
| GGCGTCTGGATTTACGCACA+AGG | 0.641633 | 2_1:+72728879 | None:intergenic |
| TACAAGATGGACCATGAGGA+CGG | 0.641757 | 2_1:+72731277 | None:intergenic |
| ATCAACCTATGCTGATGCTG+AGG | 0.651620 | 2_1:-72730776 | Msa0223190:intron |
| ACATGGCACTTTGCTCTATG+GGG | 0.653009 | 2_1:+72729435 | None:intergenic |
| AGAAGGAAGATGAAACAGAA+CGG | 0.670572 | 2_1:+72731328 | None:intergenic |
| TATATACAAGATGGACCATG+AGG | 0.716840 | 2_1:+72731273 | None:intergenic |
| TGCCTTCTGATACTGCAACG+AGG | 0.764708 | 2_1:+72730799 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATAAAACTATTTTC+AGG | + | chr2_1:72729539-72729558 | None:intergenic | 10.0% |
| !!! | GAAAATAGTTTTATTAAAAT+TGG | - | chr2_1:72729539-72729558 | Msa0223190:intron | 10.0% |
| !! | ATAAAAAGTTAAAATTTGTA+AGG | + | chr2_1:72730080-72730099 | None:intergenic | 10.0% |
| !! | TTAAAGAAAAAATAATACTT+TGG | - | chr2_1:72730809-72730828 | Msa0223190:CDS | 10.0% |
| !! | TAATAATATGTGAAATTAAT+TGG | + | chr2_1:72731014-72731033 | None:intergenic | 10.0% |
| !!! | ATTGAGAATTATTTTAAACA+TGG | - | chr2_1:72729001-72729020 | Msa0223190:intron | 15.0% |
| !! | ATCTTATGTTATTCATATTA+TGG | - | chr2_1:72729171-72729190 | Msa0223190:intron | 15.0% |
| !!! | TTTTATTAAAATTGGTTTTG+CGG | - | chr2_1:72729547-72729566 | Msa0223190:intron | 15.0% |
| !! | TAATAAATATTACATTCATC+TGG | - | chr2_1:72729686-72729705 | Msa0223190:intron | 15.0% |
| !!! | TATCAAAATGCATTTAATTT+AGG | - | chr2_1:72729909-72729928 | Msa0223190:intron | 15.0% |
| !!! | TTTAATTTAGGATTATCATA+TGG | - | chr2_1:72729921-72729940 | Msa0223190:intron | 15.0% |
| !! | TGTAACATAATATTAATTGA+AGG | - | chr2_1:72730838-72730857 | Msa0223190:CDS | 15.0% |
| !! | GTAACATAATATTAATTGAA+GGG | - | chr2_1:72730839-72730858 | Msa0223190:CDS | 15.0% |
| !!! | TCATTTTGAAACAATTTTTT+TGG | - | chr2_1:72730912-72730931 | Msa0223190:intron | 15.0% |
| !! | GAATAACATAAGATTAAGAT+CGG | + | chr2_1:72729165-72729184 | None:intergenic | 20.0% |
| !!! | GTTGTTTGTTTTATTGAAAA+AGG | - | chr2_1:72730365-72730384 | Msa0223190:intron | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | chr2_1:72730776-72730795 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | chr2_1:72730775-72730794 | Msa0223190:intron | 20.0% |
| !!! | ACTATGATTTTTCAATAGTA+AGG | - | chr2_1:72731209-72731228 | Msa0223190:intron | 20.0% |
| !! | TAGACATTTAAATGTAATCT+TGG | - | chr2_1:72731407-72731426 | Msa0223190:CDS | 20.0% |
| !!! | GAATTATTTTAAACATGGCA+TGG | - | chr2_1:72729006-72729025 | Msa0223190:intron | 25.0% |
| !! | TGGTGAATTTTCATCAATAA+GGG | + | chr2_1:72729342-72729361 | None:intergenic | 25.0% |
| !! | TTGGTGAATTTTCATCAATA+AGG | + | chr2_1:72729343-72729362 | None:intergenic | 25.0% |
| ! | TAAGTATAAGCAACTGAAAT+TGG | + | chr2_1:72729362-72729381 | None:intergenic | 25.0% |
| !!! | ATACTTAAGTTTTAGTTGCA+TGG | - | chr2_1:72729375-72729394 | Msa0223190:intron | 25.0% |
| ! | ATAATGCAAAGAATGCATAT+TGG | - | chr2_1:72729439-72729458 | Msa0223190:CDS | 25.0% |
| ! | TAATGCAAAGAATGCATATT+GGG | - | chr2_1:72729440-72729459 | Msa0223190:CDS | 25.0% |
| !!! | GAATGTTTTTGTTTTCGAAA+AGG | - | chr2_1:72729598-72729617 | Msa0223190:intron | 25.0% |
| ! | ACTACCAAATGCAAAAAATA+AGG | + | chr2_1:72729847-72729866 | None:intergenic | 25.0% |
| ! | TATGAAAGACTACAAAGTTT+GGG | + | chr2_1:72730238-72730257 | None:intergenic | 25.0% |
| ! | TTATGTTATTACCTCAACTT+CGG | + | chr2_1:72730658-72730677 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCACTTT+CGG | + | chr2_1:72730902-72730921 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACTTCTTGCAAA+AGG | - | chr2_1:72730968-72730987 | Msa0223190:CDS | 25.0% |
| !!! | GATTTTTCAATAGTAAGGAA+AGG | - | chr2_1:72731214-72731233 | Msa0223190:intron | 25.0% |
| ACAAACACATATGAACATGT+TGG | - | chr2_1:72728620-72728639 | Msa0223190:three_prime_UTR | 30.0% | |
| AACATGTCATCAACTATCAA+AGG | + | chr2_1:72729075-72729094 | None:intergenic | 30.0% | |
| ! | AAGAAGTTAAGAAGCATATG+TGG | + | chr2_1:72729133-72729152 | None:intergenic | 30.0% |
| GCATTCTTTGCATTATTAAG+AGG | + | chr2_1:72729435-72729454 | None:intergenic | 30.0% | |
| AATGCAAAGAATGCATATTG+GGG | - | chr2_1:72729441-72729460 | Msa0223190:CDS | 30.0% | |
| !!! | TTTTCAGGTCTAATCAATGT+AGG | + | chr2_1:72729524-72729543 | None:intergenic | 30.0% |
| CAAGAATAGAGAAAAGAGAA+GGG | + | chr2_1:72729743-72729762 | None:intergenic | 30.0% | |
| CGTCTTAATATTGAATGATG+TGG | - | chr2_1:72729770-72729789 | Msa0223190:intron | 30.0% | |
| ATATTGAATGATGTGGATGT+AGG | - | chr2_1:72729777-72729796 | Msa0223190:intron | 30.0% | |
| TATTGAATGATGTGGATGTA+GGG | - | chr2_1:72729778-72729797 | Msa0223190:intron | 30.0% | |
| !!! | TGGACCTTATTTTTTGCATT+TGG | - | chr2_1:72729840-72729859 | Msa0223190:intron | 30.0% |
| ATATGAAAAGTAGCAGCAAA+AGG | + | chr2_1:72730053-72730072 | None:intergenic | 30.0% | |
| !!! | TGTTTTAACTGTCGGAAAAA+AGG | + | chr2_1:72730136-72730155 | None:intergenic | 30.0% |
| ATGAAAGACTACAAAGTTTG+GGG | + | chr2_1:72730237-72730256 | None:intergenic | 30.0% | |
| CTATGAAAGACTACAAAGTT+TGG | + | chr2_1:72730239-72730258 | None:intergenic | 30.0% | |
| CTTTGACTAATGATCTTGTT+TGG | - | chr2_1:72730280-72730299 | Msa0223190:intron | 30.0% | |
| TTGCTTATCGAATAAGTGTT+CGG | + | chr2_1:72730319-72730338 | None:intergenic | 30.0% | |
| TTAAAATTGTCTGAGTGAGT+TGG | - | chr2_1:72730528-72730547 | Msa0223190:intron | 30.0% | |
| TTCTTACAAATGCAAATACC+TGG | + | chr2_1:72730566-72730585 | None:intergenic | 30.0% | |
| !! | AAGCGACACTCATTTTTAAA+CGG | + | chr2_1:72730693-72730712 | None:intergenic | 30.0% |
| TTCATTAATCTGTGTGCAAT+TGG | + | chr2_1:72730719-72730738 | None:intergenic | 30.0% | |
| CAACAAACCAATAGTTGATT+AGG | + | chr2_1:72730785-72730804 | None:intergenic | 30.0% | |
| AAAAGGCAGTTCATAACATT+AGG | - | chr2_1:72730985-72731004 | Msa0223190:CDS | 30.0% | |
| ! | TTCAAGATTTGGTAGACAAT+GGG | - | chr2_1:72731123-72731142 | Msa0223190:intron | 30.0% |
| CTAACTATAAGTGTACAAGT+TGG | + | chr2_1:72731297-72731316 | None:intergenic | 30.0% | |
| TTGTACACTTATAGTTAGCA+AGG | - | chr2_1:72731299-72731318 | Msa0223190:CDS | 30.0% | |
| !!! | AGAACGGTTGTTTCTGATTT+TGG | + | chr2_1:72728700-72728719 | None:intergenic | 35.0% |
| AGAAGGAAGATGAAACAGAA+CGG | + | chr2_1:72728716-72728735 | None:intergenic | 35.0% | |
| TTTCATCTTCCTTCTCTCTT+CGG | - | chr2_1:72728721-72728740 | Msa0223190:three_prime_UTR | 35.0% | |
| TATATACAAGATGGACCATG+AGG | + | chr2_1:72728771-72728790 | None:intergenic | 35.0% | |
| GGTCCATCTTGTATATATGT+TGG | - | chr2_1:72728774-72728793 | Msa0223190:three_prime_UTR | 35.0% | |
| GGACCAACATATATACAAGA+TGG | + | chr2_1:72728780-72728799 | None:intergenic | 35.0% | |
| CTGAGAATAAAGAGCTTCAA+GGG | + | chr2_1:72728826-72728845 | None:intergenic | 35.0% | |
| GCGCTTATGCTTAATTAAGT+TGG | - | chr2_1:72728928-72728947 | Msa0223190:CDS | 35.0% | |
| TGATCTTTGCTAATAGGCAA+GGG | - | chr2_1:72729029-72729048 | Msa0223190:intron | 35.0% | |
| TGACATGTTTGATAGAGTAG+AGG | - | chr2_1:72729086-72729105 | Msa0223190:intron | 35.0% | |
| ! | AGAAGCATATGTGGTGAATT+GGG | + | chr2_1:72729124-72729143 | None:intergenic | 35.0% |
| ! | AAGAAGCATATGTGGTGAAT+TGG | + | chr2_1:72729125-72729144 | None:intergenic | 35.0% |
| AATGATGTTGGATCTTCATG+TGG | - | chr2_1:72729466-72729485 | Msa0223190:CDS | 35.0% | |
| ! | TTCATCTGGTTAGAGTGTTA+AGG | - | chr2_1:72729700-72729719 | Msa0223190:intron | 35.0% |
| AGAAAAGAGAAGGGAAAAAG+GGG | + | chr2_1:72729734-72729753 | None:intergenic | 35.0% | |
| GAGAAAAGAGAAGGGAAAAA+GGG | + | chr2_1:72729735-72729754 | None:intergenic | 35.0% | |
| AGAGAAAAGAGAAGGGAAAA+AGG | + | chr2_1:72729736-72729755 | None:intergenic | 35.0% | |
| CCAAGAATAGAGAAAAGAGA+AGG | + | chr2_1:72729744-72729763 | None:intergenic | 35.0% | |
| ! | CCTTCTCTTTTCTCTATTCT+TGG | - | chr2_1:72729741-72729760 | Msa0223190:intron | 35.0% |
| !! | AAGTTGATGCTGCAAAACAT+TGG | + | chr2_1:72729885-72729904 | None:intergenic | 35.0% |
| ! | AATGTTTTGCAGCATCAACT+TGG | - | chr2_1:72729884-72729903 | Msa0223190:CDS | 35.0% |
| ! | ACAACTAAGTCCTCTTTTCA+TGG | - | chr2_1:72729956-72729975 | Msa0223190:intron | 35.0% |
| ATGGTATTCACCATGAAAAG+AGG | + | chr2_1:72729969-72729988 | None:intergenic | 35.0% | |
| GGTGAATACCATTATCTTCA+TGG | - | chr2_1:72729977-72729996 | Msa0223190:intron | 35.0% | |
| ! | AGCAAAAGGATTTTTACCTG+AGG | + | chr2_1:72730039-72730058 | None:intergenic | 35.0% |
| !!! | CCTTGAAGTGTTTTAACTGT+CGG | + | chr2_1:72730144-72730163 | None:intergenic | 35.0% |
| TTAAAACACTTCAAGGCTTG+TGG | - | chr2_1:72730148-72730167 | Msa0223190:CDS | 35.0% | |
| TGAAAGACTACAAAGTTTGG+GGG | + | chr2_1:72730236-72730255 | None:intergenic | 35.0% | |
| CATAGTCTCCTTAACTTCTT+TGG | - | chr2_1:72730254-72730273 | Msa0223190:intron | 35.0% | |
| CAAAGAAGCCAAAGAAGTTA+AGG | + | chr2_1:72730265-72730284 | None:intergenic | 35.0% | |
| TATGACAGTTAGCAATCTAG+AGG | - | chr2_1:72730423-72730442 | Msa0223190:intron | 35.0% | |
| ATGCAAATACCTGGAAGATA+AGG | + | chr2_1:72730557-72730576 | None:intergenic | 35.0% | |
| TGCATTTGTAAGAACAGACA+AGG | - | chr2_1:72730572-72730591 | Msa0223190:intron | 35.0% | |
| !! | GACACTCATTTTTAAACGGA+GGG | + | chr2_1:72730689-72730708 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr2_1:72730938-72730957 | Msa0223190:intron | 35.0% |
| CAGCAATCAACTTCAAGATT+TGG | - | chr2_1:72731112-72731131 | Msa0223190:intron | 35.0% | |
| ! | CTTCAAGATTTGGTAGACAA+TGG | - | chr2_1:72731122-72731141 | Msa0223190:intron | 35.0% |
| ! | TTTGGTAGACAATGGGTTTA+TGG | - | chr2_1:72731130-72731149 | Msa0223190:intron | 35.0% |
| ! | TTGGTAGACAATGGGTTTAT+GGG | - | chr2_1:72731131-72731150 | Msa0223190:intron | 35.0% |
| AGAAAATTTACAGCTCCCTT+TGG | + | chr2_1:72731186-72731205 | None:intergenic | 35.0% | |
| ACACTTATAGTTAGCAAGGA+AGG | - | chr2_1:72731303-72731322 | Msa0223190:CDS | 35.0% | |
| AAGAGCTTCAAGGGTTTCTT+GGG | + | chr2_1:72728817-72728836 | None:intergenic | 40.0% | |
| AAAGAGCTTCAAGGGTTTCT+TGG | + | chr2_1:72728818-72728837 | None:intergenic | 40.0% | |
| CCTGAGAATAAAGAGCTTCA+AGG | + | chr2_1:72728827-72728846 | None:intergenic | 40.0% | |
| CCTTGAAGCTCTTTATTCTC+AGG | - | chr2_1:72728824-72728843 | Msa0223190:three_prime_UTR | 40.0% | |
| GCATGGTGATCTTTGCTAAT+AGG | - | chr2_1:72729023-72729042 | Msa0223190:intron | 40.0% | |
| GTGATCTTTGCTAATAGGCA+AGG | - | chr2_1:72729028-72729047 | Msa0223190:intron | 40.0% | |
| GCAAGGGATGCATATTACAA+AGG | - | chr2_1:72729045-72729064 | Msa0223190:intron | 40.0% | |
| AAGCATATGTGGTGAATTGG+GGG | + | chr2_1:72729122-72729141 | None:intergenic | 40.0% | |
| GAAGCATATGTGGTGAATTG+GGG | + | chr2_1:72729123-72729142 | None:intergenic | 40.0% | |
| GGTAACAGTTGAAGCTTAAG+TGG | - | chr2_1:72729192-72729211 | Msa0223190:intron | 40.0% | |
| CAGTTGAAGCTTAAGTGGTA+TGG | - | chr2_1:72729197-72729216 | Msa0223190:intron | 40.0% | |
| AGGATACTTCACAACTGACT+TGG | + | chr2_1:72729225-72729244 | None:intergenic | 40.0% | |
| ATCAATAAGGGTGATAGCCA+AGG | + | chr2_1:72729330-72729349 | None:intergenic | 40.0% | |
| CATATTGGGGAGAATGATGT+TGG | - | chr2_1:72729454-72729473 | Msa0223190:CDS | 40.0% | |
| ! | TTTTTACATTAGCGAGTGCG+TGG | - | chr2_1:72729820-72729839 | Msa0223190:intron | 40.0% |
| ! | TGCATTTGGTAGTTCAGCAA+TGG | - | chr2_1:72729854-72729873 | Msa0223190:CDS | 40.0% |
| ! | TTTGGTAGTTCAGCAATGGT+TGG | - | chr2_1:72729858-72729877 | Msa0223190:CDS | 40.0% |
| ! | TTGGTAGTTCAGCAATGGTT+GGG | - | chr2_1:72729859-72729878 | Msa0223190:CDS | 40.0% |
| ACCATTATCTTCATGGCACT+CGG | - | chr2_1:72729984-72730003 | Msa0223190:intron | 40.0% | |
| !! | CGGTTTTGTCATAGGATATC+CGG | - | chr2_1:72730004-72730023 | Msa0223190:intron | 40.0% |
| CCGACAGTTAAAACACTTCA+AGG | - | chr2_1:72730141-72730160 | Msa0223190:CDS | 40.0% | |
| ! | AATGACTTGGCAGCACTAAA+GGG | - | chr2_1:72730174-72730193 | Msa0223190:CDS | 40.0% |
| AAGGGTTCATGTCCAAATTG+TGG | - | chr2_1:72730192-72730211 | Msa0223190:CDS | 40.0% | |
| ATGTCCAAATTGTGGAGAAG+AGG | - | chr2_1:72730200-72730219 | Msa0223190:CDS | 40.0% | |
| CTAACCTCTTCTCCACAATT+TGG | + | chr2_1:72730207-72730226 | None:intergenic | 40.0% | |
| AGTTGGATTCCTTATCTTCC+AGG | - | chr2_1:72730545-72730564 | Msa0223190:intron | 40.0% | |
| CCAATAAGCATTCACACACA+TGG | + | chr2_1:72730626-72730645 | None:intergenic | 40.0% | |
| CCATGTGTGTGAATGCTTAT+TGG | - | chr2_1:72730623-72730642 | Msa0223190:intron | 40.0% | |
| !! | CGACACTCATTTTTAAACGG+AGG | + | chr2_1:72730690-72730709 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr2_1:72730942-72730961 | Msa0223190:intron | 40.0% |
| !! | GGAGTTGATATGTCAATCAC+TGG | - | chr2_1:72731324-72731343 | Msa0223190:CDS | 40.0% |
| TACAAGATGGACCATGAGGA+CGG | + | chr2_1:72728767-72728786 | None:intergenic | 45.0% | |
| ATCCTCGTTGCAGTATCAGA+AGG | - | chr2_1:72729240-72729259 | Msa0223190:intron | 45.0% | |
| ATCAACCTATGCTGATGCTG+AGG | - | chr2_1:72729265-72729284 | Msa0223190:intron | 45.0% | |
| AATCACCTCAGCATCAGCAT+AGG | + | chr2_1:72729273-72729292 | None:intergenic | 45.0% | |
| ACTTCTTCTTTGCTCTGCCT+TGG | - | chr2_1:72729310-72729329 | Msa0223190:intron | 45.0% | |
| !! | TGGTTTTGCGGCGTTGAATT+AGG | - | chr2_1:72729559-72729578 | Msa0223190:intron | 45.0% |
| AGAGAAGGGAAAAAGGGGTA+GGG | + | chr2_1:72729729-72729748 | None:intergenic | 45.0% | |
| AAGAGAAGGGAAAAAGGGGT+AGG | + | chr2_1:72729730-72729749 | None:intergenic | 45.0% | |
| GAGGACTTAGTTGTGATGCT+TGG | + | chr2_1:72729950-72729969 | None:intergenic | 45.0% | |
| ACCGAGTGCCATGAAGATAA+TGG | + | chr2_1:72729988-72730007 | None:intergenic | 45.0% | |
| !! | ATGGCACTCGGTTTTGTCAT+AGG | - | chr2_1:72729996-72730015 | Msa0223190:intron | 45.0% |
| AAACACTTCAAGGCTTGTGG+AGG | - | chr2_1:72730151-72730170 | Msa0223190:CDS | 45.0% | |
| ! | GAATGACTTGGCAGCACTAA+AGG | - | chr2_1:72730173-72730192 | Msa0223190:CDS | 45.0% |
| ACATGGCACTTTGCTCTATG+GGG | + | chr2_1:72730609-72730628 | None:intergenic | 45.0% | |
| CACATGGCACTTTGCTCTAT+GGG | + | chr2_1:72730610-72730629 | None:intergenic | 45.0% | |
| ACACATGGCACTTTGCTCTA+TGG | + | chr2_1:72730611-72730630 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr2_1:72730941-72730960 | Msa0223190:intron | 45.0% |
| TCTTGGGTGGCAGTTTGAAG+AGG | + | chr2_1:72728801-72728820 | None:intergenic | 50.0% | |
| AGCTTCAAGGGTTTCTTGGG+TGG | + | chr2_1:72728814-72728833 | None:intergenic | 50.0% | |
| TGCCTTCTGATACTGCAACG+AGG | + | chr2_1:72729245-72729264 | None:intergenic | 50.0% | |
| GAGAAGGGAAAAAGGGGTAG+GGG | + | chr2_1:72729728-72729747 | None:intergenic | 50.0% | |
| GAATGATGTGGATGTAGGGC+AGG | - | chr2_1:72729782-72729801 | Msa0223190:intron | 50.0% | |
| AGGGCAGGAAGATCTGTCTA+TGG | - | chr2_1:72729797-72729816 | Msa0223190:intron | 50.0% | |
| TTACCTGAGGCAGAAGCAAC+CGG | + | chr2_1:72730026-72730045 | None:intergenic | 50.0% | |
| AGGCTTGTGGAGGAATGACT+TGG | - | chr2_1:72730161-72730180 | Msa0223190:CDS | 50.0% | |
| GGAATTTCGCACCGAAGTTG+AGG | - | chr2_1:72730644-72730663 | Msa0223190:intron | 50.0% | |
| TGCGTAAATCCAGACGCCAA+AGG | - | chr2_1:72731167-72731186 | Msa0223190:intron | 50.0% | |
| GCGTAAATCCAGACGCCAAA+GGG | - | chr2_1:72731168-72731187 | Msa0223190:intron | 50.0% | |
| AGCAACAGCAGCACCGCTTT+AGG | - | chr2_1:72728651-72728670 | Msa0223190:three_prime_UTR | 55.0% | |
| ! | AACAGCAGCACCGCTTTAGG+TGG | - | chr2_1:72728654-72728673 | Msa0223190:three_prime_UTR | 55.0% |
| ! | CACCGCTTTAGGTGGATGGA+CGG | - | chr2_1:72728662-72728681 | Msa0223190:three_prime_UTR | 55.0% |
| CACCGTCCATCCACCTAAAG+CGG | + | chr2_1:72728667-72728686 | None:intergenic | 55.0% | |
| GGCAGAGATCCGAAGAGAGA+AGG | + | chr2_1:72728733-72728752 | None:intergenic | 55.0% | |
| TATCCGGTTGCTTCTGCCTC+AGG | - | chr2_1:72730020-72730039 | Msa0223190:intron | 55.0% | |
| GGCGTCTGGATTTACGCACA+AGG | + | chr2_1:72731165-72731184 | None:intergenic | 55.0% | |
| TTACAGCTCCCTTTGGCGTC+TGG | + | chr2_1:72731179-72731198 | None:intergenic | 55.0% | |
| ! | GCAGCACCGCTTTAGGTGGA+TGG | - | chr2_1:72728658-72728677 | Msa0223190:three_prime_UTR | 60.0% |
| ATGAGGACGGTCGTCGCAGG+TGG | + | chr2_1:72728754-72728773 | None:intergenic | 65.0% | |
| ACCTGCGACGACCGTCCTCA+TGG | - | chr2_1:72728753-72728772 | Msa0223190:three_prime_UTR | 65.0% | |
| ACCATGAGGACGGTCGTCGC+AGG | + | chr2_1:72728757-72728776 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72728602 | 72731461 | 72728602 | ID=Msa0223190;Name=Msa0223190 |
| chr2_1 | mRNA | 72728602 | 72731461 | 72728602 | ID=Msa0223190-mRNA-1;Parent=Msa0223190;Name=Msa0223190-mRNA-1;_AED=0.24;_eAED=0.24;_QI=28|1|1|1|1|1|7|263|286 |
| chr2_1 | exon | 72728602 | 72728948 | 72728602 | ID=Msa0223190-mRNA-1:exon:21082;Parent=Msa0223190-mRNA-1 |
| chr2_1 | exon | 72729398 | 72729496 | 72729398 | ID=Msa0223190-mRNA-1:exon:21081;Parent=Msa0223190-mRNA-1 |
| chr2_1 | exon | 72729842 | 72729915 | 72729842 | ID=Msa0223190-mRNA-1:exon:21080;Parent=Msa0223190-mRNA-1 |
| chr2_1 | exon | 72730022 | 72730259 | 72730022 | ID=Msa0223190-mRNA-1:exon:21079;Parent=Msa0223190-mRNA-1 |
| chr2_1 | exon | 72730777 | 72730863 | 72730777 | ID=Msa0223190-mRNA-1:exon:21078;Parent=Msa0223190-mRNA-1 |
| chr2_1 | exon | 72730956 | 72731018 | 72730956 | ID=Msa0223190-mRNA-1:exon:21077;Parent=Msa0223190-mRNA-1 |
| chr2_1 | exon | 72731218 | 72731461 | 72731218 | ID=Msa0223190-mRNA-1:exon:21076;Parent=Msa0223190-mRNA-1 |
| chr2_1 | five_prime_UTR | 72731434 | 72731461 | 72731434 | ID=Msa0223190-mRNA-1:five_prime_utr;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72731218 | 72731433 | 72731218 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72730956 | 72731018 | 72730956 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72730777 | 72730863 | 72730777 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72730022 | 72730259 | 72730022 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72729842 | 72729915 | 72729842 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72729398 | 72729496 | 72729398 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | CDS | 72728865 | 72728948 | 72728865 | ID=Msa0223190-mRNA-1:cds;Parent=Msa0223190-mRNA-1 |
| chr2_1 | three_prime_UTR | 72728602 | 72728864 | 72728602 | ID=Msa0223190-mRNA-1:three_prime_utr;Parent=Msa0223190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
