AlfalfaGEDB | Msa1104860

M. sativa cultivar zhongmu-4 / Msa1104860

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01535.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104860	XP_013448704.1	97.244	508	14	0	1	508	1	508	0.0	1031

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104860	sp\|Q9FKC3\|PP424_ARATH	66.796	515	157	6	1	508	1	508	0.0	697

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104860	A0A072TZW2	97.244	508	14	0	1	508	1	508	0.0	1031

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa1104860	0.805558	1.260019e-49	-8.615850e-47
Msa0015220	Msa1104860	0.821633	3.640374e-53	-8.615850e-47
Msa0038750	Msa1104860	0.801591	8.374888e-49	-8.615850e-47
Msa0046050	Msa1104860	0.809458	1.873483e-50	-8.615850e-47
Msa0075080	Msa1104860	0.802603	5.187689e-49	-8.615850e-47
Msa0199490	Msa1104860	0.809786	1.592583e-50	-8.615850e-47
Msa0390760	Msa1104860	0.800322	1.522097e-48	-8.615850e-47
Msa0428300	Msa1104860	0.802193	6.299667e-49	-8.615850e-47
Msa0437790	Msa1104860	0.803055	4.183349e-49	-8.615850e-47
Msa0441180	Msa1104860	0.816315	5.891599e-52	-8.615850e-47

Showing 1 to 10 of 27 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104860	MtrunA17_Chr7g0236501	97.244	508	14	0	1	508	1	508	0.0	1031
Msa1104860	MtrunA17_Chr3g0089851	44.471	416	229	1	82	497	66	479	4.32e-130	387
Msa1104860	MtrunA17_Chr3g0089851	23.853	327	244	2	115	437	164	489	4.01e-32	129
Msa1104860	MtrunA17_Chr0c20g0493831	45.320	406	219	1	81	486	73	475	2.18e-123	370
Msa1104860	MtrunA17_Chr0c20g0493831	25.839	298	220	1	203	499	121	418	1.01e-24	107
Msa1104860	MtrunA17_Chr4g0069231	45.844	397	212	1	81	477	73	466	9.89e-122	365
Msa1104860	MtrunA17_Chr4g0069231	25.839	298	220	1	203	499	121	418	5.73e-25	107
Msa1104860	MtrunA17_Chr8g0382891	28.947	342	238	2	129	466	96	436	2.90e-42	157
Msa1104860	MtrunA17_Chr8g0382891	28.440	327	222	5	160	478	91	413	1.24e-32	130
Msa1104860	MtrunA17_Chr8g0382891	24.809	262	193	1	243	500	139	400	2.20e-23	103

Showing 1 to 10 of 876 entries

Previous1 2 3 4 5…88Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104860	AT5G48730.1	66.796	515	157	6	1	508	1	508	0.0	697
Msa1104860	AT3G53170.4	46.911	437	225	2	53	489	4	433	4.43e-131	388
Msa1104860	AT3G53170.2	46.591	440	222	3	53	489	54	483	1.37e-130	389
Msa1104860	AT3G53170.1	46.591	440	222	3	53	489	54	483	1.37e-130	389
Msa1104860	AT3G53170.3	43.409	440	209	4	53	489	54	456	1.22e-114	347
Msa1104860	AT3G06430.1	44.638	401	211	3	90	486	67	460	2.89e-114	347
Msa1104860	AT4G39620.2	28.852	357	247	4	129	480	112	466	6.18e-47	171
Msa1104860	AT4G39620.2	26.198	313	225	3	182	489	94	405	5.29e-28	117
Msa1104860	AT4G39620.2	24.793	242	149	4	262	501	103	313	6.20e-16	80.9
Msa1104860	AT4G39620.1	28.852	357	247	4	129	480	112	466	9.97e-47	171

Showing 1 to 10 of 1,133 entries

Previous1 2 3 4 5…114Next

Find 145 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTCTTAGAATTAAC+AGG	0.302272	7_3:+42707910	None:intergenic
AACACAACAAAATCTTCTAA+TGG	0.440795	7_3:-42708244	Msa1104860:exon
AACACCCTTATTGATGCTTA+TGG	0.222469	7_3:-42703926	Msa1104860:CDS
AACAGTGAAGAGACCTCCTT+TGG	0.491160	7_3:-42702838	Msa1104860:CDS
AACCTTCATCAACCATAGCT+TGG	0.527003	7_3:+42704185	None:intergenic
AACTACTGCGTGAACAGCTT+TGG	0.382800	7_3:-42704291	Msa1104860:CDS
AACTAGCAGTAAATGATGAA+CGG	0.601164	7_3:-42708092	Msa1104860:CDS
AAGAGACTGAACTTTATCGA+AGG	0.632079	7_3:+42703997	None:intergenic
AAGAGCTCAAAAGCTTTCTC+AGG	0.441847	7_3:+42704208	None:intergenic
AAGATTGTGAACCCGATGTA+TGG	0.489612	7_3:-42703463	Msa1104860:CDS

Showing 1 to 10 of 145 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTAGCAGTAAATGATGAA+CGG	-	chr7_3:42702784-42702803	Msa1104860:three_prime_UTR	30.0%
ATTGATAAGAGAAGGAAGAA+AGG	-	chr7_3:42702942-42702961	Msa1104860:CDS	30.0%
CTTAACAGTCACTCATTTAT+CGG	-	chr7_3:42703310-42703329	Msa1104860:CDS	30.0%
ATTTATCGGTGTAATGCATA+TGG	-	chr7_3:42703324-42703343	Msa1104860:CDS	30.0%
TTTATCGGTGTAATGCATAT+GGG	-	chr7_3:42703325-42703344	Msa1104860:CDS	30.0%
CATTTGCCATTAAAAAGAAG+CGG	+	chr7_3:42703391-42703410	None:intergenic	30.0%
TCATCTAATAAAAGAGGAAG+AGG	-	chr7_3:42703520-42703539	Msa1104860:intron	30.0%
CATCTAATAAAAGAGGAAGA+GGG	-	chr7_3:42703521-42703540	Msa1104860:intron	30.0%
ATTGTTAGATGAGGAATGAT+AGG	+	chr7_3:42703579-42703598	None:intergenic	30.0%
AATGCTGATATTGTTAGATG+AGG	+	chr7_3:42703588-42703607	None:intergenic	30.0%

Showing 1 to 10 of 468 entries

Previous1 2 3 4 5…47Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	42702554	42708344	42702554	ID=Msa1104860;Name=Msa1104860
chr7_3	mRNA	42702554	42708344	42702554	ID=Msa1104860-mRNA-1;Parent=Msa1104860;Name=Msa1104860-mRNA-1;_AED=0.09;_eAED=0.09;_QI=97\|1\|1\|1\|1\|1\|3\|261\|508
chr7_3	exon	42702554	42703529	42702554	ID=Msa1104860-mRNA-1:exon:8724;Parent=Msa1104860-mRNA-1
chr7_3	exon	42703914	42704320	42703914	ID=Msa1104860-mRNA-1:exon:8723;Parent=Msa1104860-mRNA-1
chr7_3	exon	42707843	42708344	42707843	ID=Msa1104860-mRNA-1:exon:8722;Parent=Msa1104860-mRNA-1
chr7_3	five_prime_UTR	42708248	42708344	42708248	ID=Msa1104860-mRNA-1:five_prime_utr;Parent=Msa1104860-mRNA-1
chr7_3	CDS	42707843	42708247	42707843	ID=Msa1104860-mRNA-1:cds;Parent=Msa1104860-mRNA-1
chr7_3	CDS	42703914	42704320	42703914	ID=Msa1104860-mRNA-1:cds;Parent=Msa1104860-mRNA-1
chr7_3	CDS	42702815	42703529	42702815	ID=Msa1104860-mRNA-1:cds;Parent=Msa1104860-mRNA-1
chr7_3	three_prime_UTR	42702554	42702814	42702554	ID=Msa1104860-mRNA-1:three_prime_utr;Parent=Msa1104860-mRNA-1

Gene Sequence

>Msa1104860

ATGGCATCACTCTCCACCACCACCACCGCTCGCTTCCCTCCTCTCCCTCCACCCAACCCCCACCGTCTCCGAACCCGAGCACAATCCATTCCCTTACCCGATCCTCCACCTTCCTCCCTCACCGGAGCAGTTAAACTAGCAGTAAATGATGAACGGACGAAGAGAATCGCGAAGGAAGTGGAGAAGATGAAAAAGAAGGAAGTAAAAGAGAGAAAGGAGATGAAGAATGCGAAAGTAGCTTCGCAGAAAGCGGTTTCTGTTATTCTTCGTAGAGAAGCTACTAAAGCGGTTATTGATAAGAGAAGGAAGAAAGGTCCTGTTAATTCTAAGAAACTTTTGCCTCGAACTGTTCTTGAAGCGCTTAATGAACGGATCTCCGCTTTTCGTTGGGAATCTGCTCTTAAGGTTTTTGAACTACTGCGTGAACAGCTTTGGTACAGACCTTACCCTGGTGTATACATCAAGTTAATTGTCATGCTTGGAAAATGTAAGCAACCTGAGAAAGCTTTTGAGCTCTTCCAAGCTATGGTTGATGAAGGTTGTGTTTTGGACTGTGAATCATACACTGCACTGTTATCCGCCTACGGCAGGAGTGGTCTCTTGGATAAAGCTTTCTCTCTTCTTGAGGAAATGAAGACTACACCTGGTTGTCAGCCAGACATCCAGACTTATTCAATCCTAATAAAATCTTGCTTGCAAGTTTTTGCCTTCGATAAAGTTCAGTCTCTTTTATCTGACATGGCCACTCATGGTATCAAACCAAACACAGTCACCTACAACACCCTTATTGATGCTTATGGGAAGGCAAAAAGATTTTCAGAAATGGAATCTACACTTCTGGAAATGCTTGCTGAACAAGATTGTGAACCCGATGTATGGACCATGAATTCAACACTCAGGGCCTTTGGCAACCTAGGGCAGATAGAAACAATGGAGAGGTGTTATGACAAGTTTCAGACATCTGGAATCCAACCAAACGTTCAGACCTTCAATATTCTCTTGGATTCCTACGGCAAGGCCCATGATTACACGAAAATGAGTGCTGTGATGGAATACATGCAGAAATACCATTATTCTTGGACGATTGTGACCTACAATATTGTGATTGATGCTTTTGGGAAGGCTGGGGATCTCAAACAGATGGAGTATTTGTTTAGACTAATGCGGTCAGAGAGAATTAAACCTAGTTGTGTTACCCTGTGCTCGCTTGTGAGGGCTTATGCACATGCAGGTAAGCCTGATAAAATCGGTGGTGTCCTACGTTTTGTTGACAATTCAGATGTAACATTGGATACGGTATTCTTCAATTGCTTGGTGGATGCTTATATGAGATTAGATTGTTTAGATGAGATGAAGGGAGTTCTTGAGATAATGGAACATAAAGGTTGTAAACCCGATTTCATAACTTATAGAACAATGATTAAAGCTTATTCATCTAAGGGCATGCATAGTCATGTCAAGGAGCTTAACGGGCTCCTCGCAACAGTGAAGAGACCTCCTTTGGAAAGAAACAAGCCTGACTTTTGA

Protein sequence

>Msa1104860

MASLSTTTTARFPPLPPPNPHRLRTRAQSIPLPDPPPSSLTGAVKLAVNDERTKRIAKEVEKMKKKEVKERKEMKNAKVASQKAVSVILRREATKAVIDKRRKKGPVNSKKLLPRTVLEALNERISAFRWESALKVFELLREQLWYRPYPGVYIKLIVMLGKCKQPEKAFELFQAMVDEGCVLDCESYTALLSAYGRSGLLDKAFSLLEEMKTTPGCQPDIQTYSILIKSCLQVFAFDKVQSLLSDMATHGIKPNTVTYNTLIDAYGKAKRFSEMESTLLEMLAEQDCEPDVWTMNSTLRAFGNLGQIETMERCYDKFQTSGIQPNVQTFNILLDSYGKAHDYTKMSAVMEYMQKYHYSWTIVTYNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYAHAGKPDKIGGVLRFVDNSDVTLDTVFFNCLVDAYMRLDCLDEMKGVLEIMEHKGCKPDFITYRTMIKAYSSKGMHSHVKELNGLLATVKRPPLERNKPDF*