AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038750 MtrunA17_Chr1g0202411 95.804 286 9 1 1 286 21 303 0.0 550
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038750 AT1G28140.1 71.774 248 63 2 43 283 31 278 1.13e-117 339

Find 97 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTACTTTGCTTGCTTTA+TGG 0.047856 1_1:-68242626 Msa0038750:CDS
AAATGATGAGGTTATTATTA+TGG 0.190255 1_1:-68244704 Msa0038750:five_prime_UTR
CAAGTTTATAACGGCGTTTA+TGG 0.193049 1_1:-68244465 Msa0038750:CDS
AACCTGTACTACATTGTTAT+TGG 0.198954 1_1:+68242183 None:intergenic
AGCGCACTCTGCAAGCATTA+TGG 0.246210 1_1:-68243575 Msa0038750:CDS
ACAATCTTTACAGGTATAAA+AGG 0.268933 1_1:+68242218 None:intergenic
TTATGGGGCCTCGGGGTTCT+TGG 0.285137 1_1:-68243558 Msa0038750:CDS
GAAAGCCTTGATTGAGAAAC+TGG 0.308650 1_1:-68242406 Msa0038750:CDS
CGTCATTGGGTCAGGTGGGT+TGG 0.319339 1_1:-68243640 Msa0038750:CDS
ACCTGTACTACATTGTTATT+GGG 0.329643 1_1:+68242184 None:intergenic
TCATAAGTAATTTACCTTGA+TGG 0.335092 1_1:+68242560 None:intergenic
ATTATTCCTATTCTTCTTCT+CGG 0.344771 1_1:-68243249 Msa0038750:CDS
GACAGCGAAAATCAGAAATA+TGG 0.353072 1_1:-68244658 Msa0038750:exon
GTCATTGGGTCAGGTGGGTT+GGG 0.353231 1_1:-68243639 Msa0038750:CDS
AAATTTGCAGTCCGGTTTGA+TGG 0.360898 1_1:-68242661 Msa0038750:intron
ACTTAGGTCACGGGGCAAAT+AGG 0.361128 1_1:+68243695 None:intergenic
CGCCGTTATAAACTTGTTGT+TGG 0.370560 1_1:+68244472 None:intergenic
GCGCACTCTGCAAGCATTAT+GGG 0.374010 1_1:-68243574 Msa0038750:CDS
TACTTTGCTTGCTTTATGGA+TGG 0.378911 1_1:-68242622 Msa0038750:CDS
CCATCAGCTGTCTGGCTTGT+CGG 0.381851 1_1:-68243465 Msa0038750:CDS
CAAGTTTATGTCTTGGCGGT+CGG 0.386160 1_1:-68244551 Msa0038750:CDS
ACATAGCATACAATCTTTAC+AGG 0.389012 1_1:+68242209 None:intergenic
TATTCTTCTTCTCGGACATC+TGG 0.389731 1_1:-68243241 Msa0038750:intron
TGCAAGCATTATGGGGCCTC+GGG 0.396833 1_1:-68243566 Msa0038750:CDS
CTGCAAGCATTATGGGGCCT+CGG 0.396844 1_1:-68243567 Msa0038750:CDS
TTGTTCCAGTTTCTCAATCA+AGG 0.397711 1_1:+68242401 None:intergenic
AAGTTTATGTCTTGGCGGTC+GGG 0.403259 1_1:-68244550 Msa0038750:CDS
CATAAGTAATTTACCTTGAT+GGG 0.407793 1_1:+68242561 None:intergenic
ACCGACCCAATTCTGATTCT+CGG 0.410553 1_1:+68244519 None:intergenic
CTACATCACCCTTGCCCAAC+CGG 0.413007 1_1:-68243523 Msa0038750:CDS
ATCTTCGGCTTCAACGGTCC+AGG 0.413922 1_1:+68244440 None:intergenic
CCTTCTCCGAGAATCAGAAT+TGG 0.420118 1_1:-68244525 Msa0038750:CDS
TTGATAACCCATCAGCTGTC+TGG 0.422836 1_1:-68243473 Msa0038750:CDS
AATTCGAACAAGATTAGAAA+TGG 0.424141 1_1:+68244581 None:intergenic
GAGTACCTCTTTGACATCTT+CGG 0.430335 1_1:+68244425 None:intergenic
TCTTCTTCAAGTTTATGTCT+TGG 0.433170 1_1:-68244558 Msa0038750:CDS
GGGCTGAGTGAATTTCCTTC+CGG 0.442279 1_1:+68242581 None:intergenic
GAGAGATTTGAACGTGAAAA+CGG 0.450871 1_1:+68242443 None:intergenic
AGTTCCGTCGTCCATCAAAC+CGG 0.455453 1_1:+68242650 None:intergenic
ATAACGGCGTTTATGGCCCC+TGG 0.459012 1_1:-68244458 Msa0038750:CDS
ACTTTGCTTGCTTTATGGAT+GGG 0.461719 1_1:-68242621 Msa0038750:CDS
TCAAAACACAAGATTTGATC+AGG 0.461775 1_1:-68244759 None:intergenic
ATTATAAAAGAAAAGTTGTC+AGG 0.464062 1_1:-68242121 Msa0038750:three_prime_UTR
CAGGTTATATCGTACCGATC+AGG 0.483142 1_1:-68243762 Msa0038750:CDS
AGATGTCCGAGAAGAAGAAT+AGG 0.484627 1_1:+68243243 None:intergenic
TTTGACATCTTCGGCTTCAA+CGG 0.489022 1_1:+68244434 None:intergenic
TCTTCAAGTTTATGTCTTGG+CGG 0.493287 1_1:-68244555 Msa0038750:CDS
TGCTACGGCAAGCTAGAAGC+TGG 0.499071 1_1:-68243285 Msa0038750:CDS
CTTCTCCGAGAATCAGAATT+GGG 0.500907 1_1:-68244524 Msa0038750:CDS
CTCTCTTATATGAGAACTGC+AGG 0.503204 1_1:+68242264 None:intergenic
TCTTCGGCTTCAACGGTCCA+GGG 0.516093 1_1:+68244441 None:intergenic
GAGCGTATCACTTAGGTCAC+GGG 0.521094 1_1:+68243686 None:intergenic
TTTGCTTGAGCGTATCACTT+AGG 0.523274 1_1:+68243679 None:intergenic
CCGACAAGCCAGACAGCTGA+TGG 0.523521 1_1:+68243465 None:intergenic
ATCAGAAATATGGCGTTACA+AGG 0.523943 1_1:-68244648 Msa0038750:exon
AACCAACAACAAGTTTATAA+CGG 0.529478 1_1:-68244474 Msa0038750:CDS
CATATATACTTACAGTGAGC+AGG 0.537449 1_1:+68242070 None:intergenic
TACCAGCTCCAATACACCCT+GGG 0.538427 1_1:-68242357 Msa0038750:three_prime_UTR
TGGCGGTTTCAATATCTGTA+AGG 0.539090 1_1:-68244608 Msa0038750:CDS
TTTACGTCATTGGGTCAGGT+GGG 0.540791 1_1:-68243644 Msa0038750:CDS
TGAGCGTATCACTTAGGTCA+CGG 0.541459 1_1:+68243685 None:intergenic
CGGTTGGGCAAGGGTGATGT+AGG 0.542884 1_1:+68243524 None:intergenic
ACCCAATAACAATGTAGTAC+AGG 0.543867 1_1:-68242185 Msa0038750:three_prime_UTR
TTTATTAGCCGGTTGGGCAA+GGG 0.546853 1_1:+68243515 None:intergenic
TCGGTACGGTGTAAAGCGGC+GGG 0.552551 1_1:-68244501 Msa0038750:CDS
CAATTCTGATTCTCGGAGAA+GGG 0.554524 1_1:+68244526 None:intergenic
CCAATTCTGATTCTCGGAGA+AGG 0.562090 1_1:+68244525 None:intergenic
GTCGGTACGGTGTAAAGCGG+CGG 0.563056 1_1:-68244502 Msa0038750:CDS
TATATCGTACCGATCAGGAT+TGG 0.575057 1_1:-68243757 Msa0038750:CDS
GAAATTCACTCAGCCCATCA+AGG 0.577695 1_1:-68242574 Msa0038750:intron
CGCACTCTGCAAGCATTATG+GGG 0.582516 1_1:-68243573 Msa0038750:CDS
CGAACAAGATTAGAAATGGA+AGG 0.595756 1_1:+68244585 None:intergenic
CTTGAAACAGGACTCTGCTA+CGG 0.605674 1_1:-68243300 Msa0038750:intron
GAATCAGAATTGGGTCGGTA+CGG 0.606759 1_1:-68244515 Msa0038750:CDS
AGGATTAAGTACTGTTTCTG+TGG 0.608660 1_1:-68244628 Msa0038750:CDS
TCCGAGAATCAGAATTGGGT+CGG 0.617946 1_1:-68244520 Msa0038750:CDS
AATAACAATGTAGTACAGGT+TGG 0.618070 1_1:-68242181 Msa0038750:three_prime_UTR
TTTAATATCAAGGATGACAT+CGG 0.623685 1_1:-68242474 Msa0038750:intron
ATTAAGTACTGTTTCTGTGG+CGG 0.624479 1_1:-68244625 Msa0038750:CDS
ATCAGGATTGGTAACAGCTG+CGG 0.633244 1_1:-68243745 Msa0038750:CDS
CGACAAGCCAGACAGCTGAT+GGG 0.633627 1_1:+68243466 None:intergenic
CTTCGGCTTCAACGGTCCAG+GGG 0.636756 1_1:+68244442 None:intergenic
AAACACAAGATTTGATCAGG+TGG 0.637760 1_1:-68244756 None:intergenic
CAGCTGTTACCAATCCTGAT+CGG 0.643027 1_1:+68243748 None:intergenic
CAGTCCGGTTTGATGGACGA+CGG 0.644994 1_1:-68242654 Msa0038750:CDS
TAGGTCACGGGGCAAATAGG+CGG 0.650443 1_1:+68243698 None:intergenic
GGTGGACTCCTTGAACTCGT+AGG 0.652460 1_1:-68242334 Msa0038750:three_prime_UTR
TGAAGCCGAAGATGTCAAAG+AGG 0.661714 1_1:-68244430 Msa0038750:intron
GCAGTTCTCATATAAGAGAG+AGG 0.662102 1_1:-68242261 Msa0038750:three_prime_UTR
TGGGTCGGTACGGTGTAAAG+CGG 0.668122 1_1:-68244505 Msa0038750:CDS
ATACCAGCTCCAATACACCC+TGG 0.669895 1_1:-68242358 Msa0038750:three_prime_UTR
ACCAGCTCCAATACACCCTG+GGG 0.683177 1_1:-68242356 Msa0038750:three_prime_UTR
AGCGTATCACTTAGGTCACG+GGG 0.685268 1_1:+68243687 None:intergenic
GCAAGCATTATGGGGCCTCG+GGG 0.704748 1_1:-68243565 Msa0038750:CDS
TCTTATATGAGAACTGCAGG+CGG 0.723144 1_1:+68242267 None:intergenic
CCAGCTCCAATACACCCTGG+GGG 0.764571 1_1:-68242355 Msa0038750:three_prime_UTR
CAGCTGATCCAAGAACCCCG+AGG 0.791341 1_1:+68243550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATTGAATTAATATTAAA+TGG + chr1_1:68243402-68243421 None:intergenic 10.0%
!!! TTTTTTTTTTCAATTAGTTA+AGG - chr1_1:68243636-68243655 Msa0038750:CDS 10.0%
!! AATTAATTATTGACAACTTT+AGG - chr1_1:68242624-68242643 Msa0038750:CDS 15.0%
!! AAAATATAAATATGACCAAT+GGG + chr1_1:68242705-68242724 None:intergenic 15.0%
!! AAAAATATAAATATGACCAA+TGG + chr1_1:68242706-68242725 None:intergenic 15.0%
!!! TTATATTTTTAAGAGACATT+TGG - chr1_1:68242716-68242735 Msa0038750:intron 15.0%
!! AATATACCTTATTCAAAATT+TGG - chr1_1:68242752-68242771 Msa0038750:intron 15.0%
!! ATGGTAAAAATAAAAATAGA+TGG + chr1_1:68243383-68243402 None:intergenic 15.0%
!! TAATATTAATTCAATAGAGA+AGG - chr1_1:68243404-68243423 Msa0038750:intron 15.0%
!! AATATTAATTCAATAGAGAA+GGG - chr1_1:68243405-68243424 Msa0038750:intron 15.0%
!! AGAAAAAGATATTATACAAA+TGG + chr1_1:68244074-68244093 None:intergenic 15.0%
!!! ATTTTTTTCGAAAAAAATGA+TGG - chr1_1:68244454-68244473 Msa0038750:CDS 15.0%
!! AAATGATGAGGTTATTATTA+TGG - chr1_1:68242060-68242079 Msa0038750:three_prime_UTR 20.0%
!!! AAATTGTTATTACTCCATAA+GGG + chr1_1:68242555-68242574 None:intergenic 20.0%
!!! ATTGATTTTTTTTACGTCAT+TGG - chr1_1:68243110-68243129 Msa0038750:intron 20.0%
!!! TTGATTTTTTTTACGTCATT+GGG - chr1_1:68243111-68243130 Msa0038750:intron 20.0%
!!! TGTATTAAAGTTTTATTAGC+CGG + chr1_1:68243263-68243282 None:intergenic 20.0%
!! AATTATCAAAATCATGAGAA+TGG - chr1_1:68243690-68243709 Msa0038750:CDS 20.0%
!! CATCAAAAGAAATATGATAA+CGG + chr1_1:68243915-68243934 None:intergenic 20.0%
!! ATTATAAAAGAAAAGTTGTC+AGG - chr1_1:68244643-68244662 Msa0038750:exon 20.0%
! AATTCGAACAAGATTAGAAA+TGG + chr1_1:68242186-68242205 None:intergenic 25.0%
! AACCAACAACAAGTTTATAA+CGG - chr1_1:68242290-68242309 Msa0038750:three_prime_UTR 25.0%
! CTTATAACAGAAATTGATTG+AGG + chr1_1:68242372-68242391 None:intergenic 25.0%
! AACTGAATTTAGAAAACAGA+AGG + chr1_1:68242457-68242476 None:intergenic 25.0%
!! CAAATTGTTATTACTCCATA+AGG + chr1_1:68242556-68242575 None:intergenic 25.0%
! CTTAAGTGTCTCTTAAAAAT+AGG - chr1_1:68242798-68242817 Msa0038750:intron 25.0%
! ATTATTCCTATTCTTCTTCT+CGG - chr1_1:68243515-68243534 Msa0038750:CDS 25.0%
!! CATGTTGCCTATTTAATTTA+AGG - chr1_1:68243582-68243601 Msa0038750:CDS 25.0%
! ATGGCTACCTTAAATTAAAT+AGG + chr1_1:68243592-68243611 None:intergenic 25.0%
!! TTTTCAATTAGTTAAGGAGT+TGG - chr1_1:68243642-68243661 Msa0038750:CDS 25.0%
!!! TTTTTTCGATGAAGATCTAA+TGG - chr1_1:68243715-68243734 Msa0038750:CDS 25.0%
! CTATTATTTATTTGAGTCCA+TGG - chr1_1:68243935-68243954 Msa0038750:intron 25.0%
! ACAATAATTTAAGAGTCAAG+AGG + chr1_1:68243973-68243992 None:intergenic 25.0%
! TATTATACAAATGGACCAAT+CGG + chr1_1:68244065-68244084 None:intergenic 25.0%
! CATAAGTAATTTACCTTGAT+GGG + chr1_1:68244206-68244225 None:intergenic 25.0%
! TCATAAGTAATTTACCTTGA+TGG + chr1_1:68244207-68244226 None:intergenic 25.0%
! TAAACACAAATCCAATATCA+GGG + chr1_1:68244274-68244293 None:intergenic 25.0%
! TTAAACACAAATCCAATATC+AGG + chr1_1:68244275-68244294 None:intergenic 25.0%
! TGGATTTGTGTTTAATATCA+AGG - chr1_1:68244280-68244299 Msa0038750:intron 25.0%
! TTTAATATCAAGGATGACAT+CGG - chr1_1:68244290-68244309 Msa0038750:intron 25.0%
! ACAATCTTTACAGGTATAAA+AGG + chr1_1:68244549-68244568 None:intergenic 25.0%
!! CCTCATCATTTTTATTCTTG+TGG + chr1_1:68242051-68242070 None:intergenic 30.0%
CCACAAGAATAAAAATGATG+AGG - chr1_1:68242048-68242067 Msa0038750:three_prime_UTR 30.0%
! TCTTCTTCAAGTTTATGTCT+TGG - chr1_1:68242206-68242225 Msa0038750:three_prime_UTR 30.0%
GGGAAAAGGAATTACAATAA+TGG + chr1_1:68242535-68242554 None:intergenic 30.0%
! TTGTAATTCCTTTTCCCTTA+TGG - chr1_1:68242538-68242557 Msa0038750:intron 30.0%
TTATTACTCCATAAGGGAAA+AGG + chr1_1:68242549-68242568 None:intergenic 30.0%
! TCTGGTCCAAATTTTGAATA+AGG + chr1_1:68242761-68242780 None:intergenic 30.0%
GTGTCTCTTAAAAATAGGAT+CGG - chr1_1:68242803-68242822 Msa0038750:intron 30.0%
TCTTAAAAATAGGATCGGAT+CGG - chr1_1:68242808-68242827 Msa0038750:intron 30.0%
TAGTTAGCATTGCATACATA+GGG + chr1_1:68242973-68242992 None:intergenic 30.0%
ATAGTTAGCATTGCATACAT+AGG + chr1_1:68242974-68242993 None:intergenic 30.0%
!!! TAAAGTTTTATTAGCCGGTT+GGG + chr1_1:68243258-68243277 None:intergenic 30.0%
!!! TTAAAGTTTTATTAGCCGGT+TGG + chr1_1:68243259-68243278 None:intergenic 30.0%
TCATCTTGTATTCTTGAAAC+AGG - chr1_1:68243452-68243471 Msa0038750:CDS 30.0%
! TGTTTAATAGAGCACTTTAG+AGG + chr1_1:68243564-68243583 None:intergenic 30.0%
!! TGATAACGGTTATCAATTCA+GGG + chr1_1:68243901-68243920 None:intergenic 30.0%
!! ATGATAACGGTTATCAATTC+AGG + chr1_1:68243902-68243921 None:intergenic 30.0%
!! TTACTCTAAAATTTGCAGTC+CGG - chr1_1:68244095-68244114 Msa0038750:intron 30.0%
AACTTACTTTGCTTGCTTTA+TGG - chr1_1:68244138-68244157 Msa0038750:intron 30.0%
AAAAAATTCCTACGAGTTCA+AGG + chr1_1:68244441-68244460 None:intergenic 30.0%
ACATAGCATACAATCTTTAC+AGG + chr1_1:68244558-68244577 None:intergenic 30.0%
! ACCTGTACTACATTGTTATT+GGG + chr1_1:68244583-68244602 None:intergenic 30.0%
AACCTGTACTACATTGTTAT+TGG + chr1_1:68244584-68244603 None:intergenic 30.0%
AATAACAATGTAGTACAGGT+TGG - chr1_1:68244583-68244602 Msa0038750:CDS 30.0%
! TAAGTTCCATCCAGTTTTTA+TGG - chr1_1:68244729-68244748 Msa0038750:five_prime_UTR 30.0%
GACAGCGAAAATCAGAAATA+TGG - chr1_1:68242106-68242125 Msa0038750:three_prime_UTR 35.0%
ATCAGAAATATGGCGTTACA+AGG - chr1_1:68242116-68242135 Msa0038750:three_prime_UTR 35.0%
!! AGGATTAAGTACTGTTTCTG+TGG - chr1_1:68242136-68242155 Msa0038750:three_prime_UTR 35.0%
!! ATTAAGTACTGTTTCTGTGG+CGG - chr1_1:68242139-68242158 Msa0038750:three_prime_UTR 35.0%
CGAACAAGATTAGAAATGGA+AGG + chr1_1:68242182-68242201 None:intergenic 35.0%
! TCTTCAAGTTTATGTCTTGG+CGG - chr1_1:68242209-68242228 Msa0038750:three_prime_UTR 35.0%
CAAGTTTATAACGGCGTTTA+TGG - chr1_1:68242299-68242318 Msa0038750:three_prime_UTR 35.0%
ACAGAAATTGATTGAGGAGA+AGG + chr1_1:68242366-68242385 None:intergenic 35.0%
ATACGAACTAACACGTGATA+AGG + chr1_1:68242402-68242421 None:intergenic 35.0%
ACGTGTTAGTTCGTATTGAA+AGG - chr1_1:68242406-68242425 Msa0038750:CDS 35.0%
TAAATATGACCAATGGGAGT+AGG + chr1_1:68242699-68242718 None:intergenic 35.0%
!! GTCACAAAAGTTGATGTATC+TGG + chr1_1:68242779-68242798 None:intergenic 35.0%
! CTTTTAAGCTGCAACTGTAT+AGG + chr1_1:68242939-68242958 None:intergenic 35.0%
! AGTTGCAGCTTAAAAGCTTT+TGG - chr1_1:68242943-68242962 Msa0038750:intron 35.0%
!!! TTTTTTTACGTCATTGGGTC+AGG - chr1_1:68243116-68243135 Msa0038750:intron 35.0%
!! TTTGACAGGACTTGTTTTCA+AGG - chr1_1:68243337-68243356 Msa0038750:intron 35.0%
AACAAGAACCATGTATGCTA+TGG + chr1_1:68243611-68243630 None:intergenic 35.0%
TTATTGTCACCAATACCGAT+TGG - chr1_1:68244047-68244066 Msa0038750:intron 35.0%
TACTTTGCTTGCTTTATGGA+TGG - chr1_1:68244142-68244161 Msa0038750:intron 35.0%
ACTTTGCTTGCTTTATGGAT+GGG - chr1_1:68244143-68244162 Msa0038750:intron 35.0%
! GGTCTTTTTGTGATATTTGC+CGG - chr1_1:68244164-68244183 Msa0038750:intron 35.0%
! TTTTTGTGATATTTGCCGGA+AGG - chr1_1:68244168-68244187 Msa0038750:intron 35.0%
AATATCAGGGAATTTATGCG+GGG + chr1_1:68244261-68244280 None:intergenic 35.0%
CAATATCAGGGAATTTATGC+GGG + chr1_1:68244262-68244281 None:intergenic 35.0%
CCAATATCAGGGAATTTATG+CGG + chr1_1:68244263-68244282 None:intergenic 35.0%
GAGAGATTTGAACGTGAAAA+CGG + chr1_1:68244324-68244343 None:intergenic 35.0%
TTGTTCCAGTTTCTCAATCA+AGG + chr1_1:68244366-68244385 None:intergenic 35.0%
ACCCAATAACAATGTAGTAC+AGG - chr1_1:68244579-68244598 Msa0038750:CDS 35.0%
CATATATACTTACAGTGAGC+AGG + chr1_1:68244697-68244716 None:intergenic 35.0%
! ATTTCTGATTTTCGCTGTCG+AGG + chr1_1:68242105-68242124 None:intergenic 40.0%
TGGCGGTTTCAATATCTGTA+AGG - chr1_1:68242156-68242175 Msa0038750:three_prime_UTR 40.0%
CAATTCTGATTCTCGGAGAA+GGG + chr1_1:68242241-68242260 None:intergenic 40.0%
CTTCTCCGAGAATCAGAATT+GGG - chr1_1:68242240-68242259 Msa0038750:three_prime_UTR 40.0%
!! CGCCGTTATAAACTTGTTGT+TGG + chr1_1:68242295-68242314 None:intergenic 40.0%
TTTGACATCTTCGGCTTCAA+CGG + chr1_1:68242333-68242352 None:intergenic 40.0%
GAGTACCTCTTTGACATCTT+CGG + chr1_1:68242342-68242361 None:intergenic 40.0%
TCAACTATACCTACTCCCAT+TGG - chr1_1:68242687-68242706 Msa0038750:intron 40.0%
! TATATCGTACCGATCAGGAT+TGG - chr1_1:68243007-68243026 Msa0038750:intron 40.0%
TTTGCTTGAGCGTATCACTT+AGG + chr1_1:68243088-68243107 None:intergenic 40.0%
!! ACAGGACTTGTTTTCAAGGA+AGG - chr1_1:68243341-68243360 Msa0038750:intron 40.0%
AGATGTCCGAGAAGAAGAAT+AGG + chr1_1:68243524-68243543 None:intergenic 40.0%
TATTCTTCTTCTCGGACATC+TGG - chr1_1:68243523-68243542 Msa0038750:CDS 40.0%
TAAGGTAGCCATAGCATACA+TGG - chr1_1:68243600-68243619 Msa0038750:CDS 40.0%
! GCTAGAAAGAATTTGGGTTC+TGG + chr1_1:68243773-68243792 None:intergenic 40.0%
TGCAGGGCTAGAAAGAATTT+GGG + chr1_1:68243779-68243798 None:intergenic 40.0%
TTGCAGGGCTAGAAAGAATT+TGG + chr1_1:68243780-68243799 None:intergenic 40.0%
AACATATCCAACCACCTAGT+GGG - chr1_1:68243798-68243817 Msa0038750:intron 40.0%
ATCAGTGCAATCATGATAGG+AGG + chr1_1:68243871-68243890 None:intergenic 40.0%
GAGATCAGTGCAATCATGAT+AGG + chr1_1:68243874-68243893 None:intergenic 40.0%
TTTAAGAGTCAAGAGGACGA+TGG + chr1_1:68243966-68243985 None:intergenic 40.0%
ATCCACACTCACTTCTTGAT+CGG + chr1_1:68244025-68244044 None:intergenic 40.0%
ACAAATGGACCAATCGGTAT+TGG + chr1_1:68244059-68244078 None:intergenic 40.0%
! AAATTTGCAGTCCGGTTTGA+TGG - chr1_1:68244103-68244122 Msa0038750:intron 40.0%
CCGCATAAATTCCCTGATAT+TGG - chr1_1:68244260-68244279 Msa0038750:intron 40.0%
! AGGCTTTCTTTTCGTCATCA+CGG + chr1_1:68244346-68244365 None:intergenic 40.0%
GAAAGCCTTGATTGAGAAAC+TGG - chr1_1:68244358-68244377 Msa0038750:intron 40.0%
TCTTATATGAGAACTGCAGG+CGG + chr1_1:68244500-68244519 None:intergenic 40.0%
CTCTCTTATATGAGAACTGC+AGG + chr1_1:68244503-68244522 None:intergenic 40.0%
GCAGTTCTCATATAAGAGAG+AGG - chr1_1:68244503-68244522 Msa0038750:CDS 40.0%
ACGCTTCCATAAAAACTGGA+TGG + chr1_1:68244738-68244757 None:intergenic 40.0%
CAACACGCTTCCATAAAAAC+TGG + chr1_1:68244742-68244761 None:intergenic 40.0%
!! CAGTTTTTATGGAAGCGTGT+TGG - chr1_1:68244740-68244759 Msa0038750:five_prime_UTR 40.0%
CAAGTTTATGTCTTGGCGGT+CGG - chr1_1:68242213-68242232 Msa0038750:three_prime_UTR 45.0%
AAGTTTATGTCTTGGCGGTC+GGG - chr1_1:68242214-68242233 Msa0038750:three_prime_UTR 45.0%
CCAATTCTGATTCTCGGAGA+AGG + chr1_1:68242242-68242261 None:intergenic 45.0%
CCTTCTCCGAGAATCAGAAT+TGG - chr1_1:68242239-68242258 Msa0038750:three_prime_UTR 45.0%
TCCGAGAATCAGAATTGGGT+CGG - chr1_1:68242244-68242263 Msa0038750:three_prime_UTR 45.0%
ACCGACCCAATTCTGATTCT+CGG + chr1_1:68242248-68242267 None:intergenic 45.0%
GAATCAGAATTGGGTCGGTA+CGG - chr1_1:68242249-68242268 Msa0038750:three_prime_UTR 45.0%
TGAAGCCGAAGATGTCAAAG+AGG - chr1_1:68242334-68242353 Msa0038750:three_prime_UTR 45.0%
AGCCTGACTCTACTCGAATT+GGG + chr1_1:68242585-68242604 None:intergenic 45.0%
TAGCCTGACTCTACTCGAAT+TGG + chr1_1:68242586-68242605 None:intergenic 45.0%
CACACTACACTGTGTTTGCA+GGG + chr1_1:68242891-68242910 None:intergenic 45.0%
ACACACTACACTGTGTTTGC+AGG + chr1_1:68242892-68242911 None:intergenic 45.0%
TGCAATGCTAACTATGCCCA+TGG - chr1_1:68242979-68242998 Msa0038750:intron 45.0%
GGTACGATATAACCTGCCAT+GGG + chr1_1:68242998-68243017 None:intergenic 45.0%
! CAGGTTATATCGTACCGATC+AGG - chr1_1:68243002-68243021 Msa0038750:intron 45.0%
CAGCTGTTACCAATCCTGAT+CGG + chr1_1:68243019-68243038 None:intergenic 45.0%
! ATCAGGATTGGTAACAGCTG+CGG - chr1_1:68243019-68243038 Msa0038750:intron 45.0%
TGAGCGTATCACTTAGGTCA+CGG + chr1_1:68243082-68243101 None:intergenic 45.0%
! TTTTACGTCATTGGGTCAGG+TGG - chr1_1:68243119-68243138 Msa0038750:intron 45.0%
TTTACGTCATTGGGTCAGGT+GGG - chr1_1:68243120-68243139 Msa0038750:intron 45.0%
TTTATTAGCCGGTTGGGCAA+GGG + chr1_1:68243252-68243271 None:intergenic 45.0%
! TTTTATTAGCCGGTTGGGCA+AGG + chr1_1:68243253-68243272 None:intergenic 45.0%
! TTGATAACCCATCAGCTGTC+TGG - chr1_1:68243291-68243310 Msa0038750:CDS 45.0%
CCTGTCAAAGCAGCAAAAAG+AGG + chr1_1:68243326-68243345 None:intergenic 45.0%
!!! CCTCTTTTTGCTGCTTTGAC+AGG - chr1_1:68243323-68243342 Msa0038750:intron 45.0%
CTTGAAACAGGACTCTGCTA+CGG - chr1_1:68243464-68243483 Msa0038750:CDS 45.0%
AGGTGGTTGGATATGTTGCA+GGG + chr1_1:68243795-68243814 None:intergenic 45.0%
TAGGTGGTTGGATATGTTGC+AGG + chr1_1:68243796-68243815 None:intergenic 45.0%
CAACATATCCAACCACCTAG+TGG - chr1_1:68243797-68243816 Msa0038750:intron 45.0%
ACATATCCAACCACCTAGTG+GGG - chr1_1:68243799-68243818 Msa0038750:intron 45.0%
GGAGGCTGTTACTAGCAATA+AGG + chr1_1:68243853-68243872 None:intergenic 45.0%
AGAGGACGATGGAAAATCCA+TGG + chr1_1:68243955-68243974 None:intergenic 45.0%
CGGTGAAGGTAAACGAAATG+CGG + chr1_1:68244005-68244024 None:intergenic 45.0%
ACTCACTTCTTGATCGGTGA+AGG + chr1_1:68244019-68244038 None:intergenic 45.0%
GAAATTCACTCAGCCCATCA+AGG - chr1_1:68244190-68244209 Msa0038750:intron 45.0%
!!! TTTTATAATTTAATTAAGAT+TGG + chr1_1:68244632-68244651 None:intergenic 5.0%
GACCCAATTCGAGTAGAGTC+AGG - chr1_1:68242580-68242599 Msa0038750:CDS 50.0%
ATGCTAACTATGCCCATGGC+AGG - chr1_1:68242983-68243002 Msa0038750:intron 50.0%
CGGTACGATATAACCTGCCA+TGG + chr1_1:68242999-68243018 None:intergenic 50.0%
ACTTAGGTCACGGGGCAAAT+AGG + chr1_1:68243072-68243091 None:intergenic 50.0%
AGCGTATCACTTAGGTCACG+GGG + chr1_1:68243080-68243099 None:intergenic 50.0%
GAGCGTATCACTTAGGTCAC+GGG + chr1_1:68243081-68243100 None:intergenic 50.0%
AGCGCACTCTGCAAGCATTA+TGG - chr1_1:68243189-68243208 Msa0038750:intron 50.0%
GCGCACTCTGCAAGCATTAT+GGG - chr1_1:68243190-68243209 Msa0038750:intron 50.0%
CGCACTCTGCAAGCATTATG+GGG - chr1_1:68243191-68243210 Msa0038750:intron 50.0%
CACCGATCAAGAAGTGAGTG+TGG - chr1_1:68244020-68244039 Msa0038750:intron 50.0%
AGTTCCGTCGTCCATCAAAC+CGG + chr1_1:68244117-68244136 None:intergenic 50.0%
GGGCTGAGTGAATTTCCTTC+CGG + chr1_1:68244186-68244205 None:intergenic 50.0%
ATACCAGCTCCAATACACCC+TGG - chr1_1:68244406-68244425 Msa0038750:intron 50.0%
TACCAGCTCCAATACACCCT+GGG - chr1_1:68244407-68244426 Msa0038750:intron 50.0%
TGGGTCGGTACGGTGTAAAG+CGG - chr1_1:68242259-68242278 Msa0038750:three_prime_UTR 55.0%
ATAACGGCGTTTATGGCCCC+TGG - chr1_1:68242306-68242325 Msa0038750:three_prime_UTR 55.0%
TCTTCGGCTTCAACGGTCCA+GGG + chr1_1:68242326-68242345 None:intergenic 55.0%
ATCTTCGGCTTCAACGGTCC+AGG + chr1_1:68242327-68242346 None:intergenic 55.0%
TAGGTCACGGGGCAAATAGG+CGG + chr1_1:68243069-68243088 None:intergenic 55.0%
! GTCATTGGGTCAGGTGGGTT+GGG - chr1_1:68243125-68243144 Msa0038750:intron 55.0%
CTGCAAGCATTATGGGGCCT+CGG - chr1_1:68243197-68243216 Msa0038750:intron 55.0%
TGCAAGCATTATGGGGCCTC+GGG - chr1_1:68243198-68243217 Msa0038750:intron 55.0%
CTACATCACCCTTGCCCAAC+CGG - chr1_1:68243241-68243260 Msa0038750:intron 55.0%
CGACAAGCCAGACAGCTGAT+GGG + chr1_1:68243301-68243320 None:intergenic 55.0%
! CCATCAGCTGTCTGGCTTGT+CGG - chr1_1:68243299-68243318 Msa0038750:intron 55.0%
TGCTACGGCAAGCTAGAAGC+TGG - chr1_1:68243479-68243498 Msa0038750:CDS 55.0%
TATCCAACCACCTAGTGGGG+TGG - chr1_1:68243802-68243821 Msa0038750:intron 55.0%
TCATCTGCAGCCCTGCAGAT+TGG + chr1_1:68243829-68243848 None:intergenic 55.0%
! CAGTCCGGTTTGATGGACGA+CGG - chr1_1:68244110-68244129 Msa0038750:intron 55.0%
ACCAGCTCCAATACACCCTG+GGG - chr1_1:68244408-68244427 Msa0038750:intron 55.0%
! GGTGGACTCCTTGAACTCGT+AGG - chr1_1:68244430-68244449 Msa0038750:intron 55.0%
GTCGGTACGGTGTAAAGCGG+CGG - chr1_1:68242262-68242281 Msa0038750:three_prime_UTR 60.0%
TCGGTACGGTGTAAAGCGGC+GGG - chr1_1:68242263-68242282 Msa0038750:three_prime_UTR 60.0%
CTTCGGCTTCAACGGTCCAG+GGG + chr1_1:68242325-68242344 None:intergenic 60.0%
CGTCATTGGGTCAGGTGGGT+TGG - chr1_1:68243124-68243143 Msa0038750:intron 60.0%
GCAAGCATTATGGGGCCTCG+GGG - chr1_1:68243199-68243218 Msa0038750:intron 60.0%
TTATGGGGCCTCGGGGTTCT+TGG - chr1_1:68243206-68243225 Msa0038750:intron 60.0%
CAGCTGATCCAAGAACCCCG+AGG + chr1_1:68243217-68243236 None:intergenic 60.0%
CGGTTGGGCAAGGGTGATGT+AGG + chr1_1:68243243-68243262 None:intergenic 60.0%
CCGACAAGCCAGACAGCTGA+TGG + chr1_1:68243302-68243321 None:intergenic 60.0%
! GATTGGTCCACCCCACTAGG+TGG + chr1_1:68243812-68243831 None:intergenic 60.0%
! GCAGATTGGTCCACCCCACT+AGG + chr1_1:68243815-68243834 None:intergenic 60.0%
AGTGGGGTGGACCAATCTGC+AGG - chr1_1:68243815-68243834 Msa0038750:intron 60.0%
GTGGGGTGGACCAATCTGCA+GGG - chr1_1:68243816-68243835 Msa0038750:intron 60.0%
CCAGCTCCAATACACCCTGG+GGG - chr1_1:68244409-68244428 Msa0038750:intron 60.0%
AGTCCACCCCCAGGGTGTAT+TGG + chr1_1:68244418-68244437 None:intergenic 60.0%
GTTCAAGGAGTCCACCCCCA+GGG + chr1_1:68244426-68244445 None:intergenic 60.0%
AGTTCAAGGAGTCCACCCCC+AGG + chr1_1:68244427-68244446 None:intergenic 60.0%
GGTCCACCCCACTAGGTGGT+TGG + chr1_1:68243808-68243827 None:intergenic 65.0%
CCCCCAGGGTGTATTGGAGC+TGG + chr1_1:68244412-68244431 None:intergenic 65.0%
GCTCCAATACACCCTGGGGG+TGG - chr1_1:68244412-68244431 Msa0038750:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68242013 68244773 68242013 ID=Msa0038750;Name=Msa0038750
chr1_1 mRNA 68242013 68244773 68242013 ID=Msa0038750-mRNA-1;Parent=Msa0038750;Name=Msa0038750-mRNA-1;_AED=0.15;_eAED=0.15;_QI=112|1|1|1|1|1|5|370|286
chr1_1 exon 68242013 68242484 68242013 ID=Msa0038750-mRNA-1:exon:22213;Parent=Msa0038750-mRNA-1
chr1_1 exon 68242575 68242673 68242575 ID=Msa0038750-mRNA-1:exon:22212;Parent=Msa0038750-mRNA-1
chr1_1 exon 68243242 68243312 68243242 ID=Msa0038750-mRNA-1:exon:22211;Parent=Msa0038750-mRNA-1
chr1_1 exon 68243424 68243781 68243424 ID=Msa0038750-mRNA-1:exon:22210;Parent=Msa0038750-mRNA-1
chr1_1 exon 68244431 68244773 68244431 ID=Msa0038750-mRNA-1:exon:22209;Parent=Msa0038750-mRNA-1
chr1_1 five_prime_UTR 68244662 68244773 68244662 ID=Msa0038750-mRNA-1:five_prime_utr;Parent=Msa0038750-mRNA-1
chr1_1 CDS 68244431 68244661 68244431 ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1 CDS 68243424 68243781 68243424 ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1 CDS 68243242 68243312 68243242 ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1 CDS 68242575 68242673 68242575 ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1 CDS 68242383 68242484 68242383 ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1 three_prime_UTR 68242013 68242382 68242013 ID=Msa0038750-mRNA-1:three_prime_utr;Parent=Msa0038750-mRNA-1
Gene Sequence

>Msa0038750

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTTCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCCCGTGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGCCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGACTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCTATTCTTCTTCTCGGACATCTGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCTTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>Msa0038750

MALQGLSTVSVAVSISVRPSISNLVRISSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPRDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY*