AlfalfaGEDB | Msa0038750

M. sativa cultivar zhongmu-4 / Msa0038750

KEGG: -
GO: -
PFAM: PF10063.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038750	A0A396JTX7	95.804	286	9	1	1	286	21	303	0.0	550

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0038750	0.804983	1.662159e-49	-8.615850e-47
Msa0000800	Msa0038750	-0.811466	6.903137e-51	-8.615850e-47
Msa0001040	Msa0038750	0.800317	1.525427e-48	-8.615850e-47
Msa0001510	Msa0038750	0.897429	1.418943e-76	-8.615850e-47
Msa0002060	Msa0038750	0.823647	1.237481e-53	-8.615850e-47
Msa0002110	Msa0038750	0.873009	2.048883e-67	-8.615850e-47
Msa0002690	Msa0038750	0.889884	1.622799e-73	-8.615850e-47
Msa0002700	Msa0038750	0.875116	3.969931e-68	-8.615850e-47
Msa0003340	Msa0038750	0.892941	9.971257e-75	-8.615850e-47
Msa0004180	Msa0038750	0.910916	1.095940e-82	-8.615850e-47

Showing 1 to 10 of 2,605 entries

Previous1 2 3 4 5…261Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038750	MtrunA17_Chr1g0202411	95.804	286	9	1	1	286	21	303	0.0	550

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038750	AT1G28140.1	71.774	248	63	2	43	283	31	278	1.13e-117	339

Showing 1 to 1 of 1 entries

Previous1Next

Find 97 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAGATTTGATCAGG+TGG	0.637760	1_1:-68244756	None:intergenic
AAATGATGAGGTTATTATTA+TGG	0.190255	1_1:-68244704	Msa0038750:five_prime_UTR
AAATTTGCAGTCCGGTTTGA+TGG	0.360898	1_1:-68242661	Msa0038750:intron
AACCAACAACAAGTTTATAA+CGG	0.529478	1_1:-68244474	Msa0038750:CDS
AACCTGTACTACATTGTTAT+TGG	0.198954	1_1:+68242183	None:intergenic
AACTTACTTTGCTTGCTTTA+TGG	0.047856	1_1:-68242626	Msa0038750:CDS
AAGTTTATGTCTTGGCGGTC+GGG	0.403259	1_1:-68244550	Msa0038750:CDS
AATAACAATGTAGTACAGGT+TGG	0.618070	1_1:-68242181	Msa0038750:three_prime_UTR
AATTCGAACAAGATTAGAAA+TGG	0.424141	1_1:+68244581	None:intergenic
ACAATCTTTACAGGTATAAA+AGG	0.268933	1_1:+68242218	None:intergenic

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCACAAGAATAAAAATGATG+AGG	-	chr1_1:68242048-68242067	Msa0038750:three_prime_UTR	30.0%
GGGAAAAGGAATTACAATAA+TGG	+	chr1_1:68242535-68242554	None:intergenic	30.0%
TTATTACTCCATAAGGGAAA+AGG	+	chr1_1:68242549-68242568	None:intergenic	30.0%
GTGTCTCTTAAAAATAGGAT+CGG	-	chr1_1:68242803-68242822	Msa0038750:intron	30.0%
TCTTAAAAATAGGATCGGAT+CGG	-	chr1_1:68242808-68242827	Msa0038750:intron	30.0%
TAGTTAGCATTGCATACATA+GGG	+	chr1_1:68242973-68242992	None:intergenic	30.0%
ATAGTTAGCATTGCATACAT+AGG	+	chr1_1:68242974-68242993	None:intergenic	30.0%
TCATCTTGTATTCTTGAAAC+AGG	-	chr1_1:68243452-68243471	Msa0038750:CDS	30.0%
AACTTACTTTGCTTGCTTTA+TGG	-	chr1_1:68244138-68244157	Msa0038750:intron	30.0%
AAAAAATTCCTACGAGTTCA+AGG	+	chr1_1:68244441-68244460	None:intergenic	30.0%

Showing 1 to 10 of 215 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	68242013	68244773	68242013	ID=Msa0038750;Name=Msa0038750
chr1_1	mRNA	68242013	68244773	68242013	ID=Msa0038750-mRNA-1;Parent=Msa0038750;Name=Msa0038750-mRNA-1;_AED=0.15;_eAED=0.15;_QI=112\|1\|1\|1\|1\|1\|5\|370\|286
chr1_1	exon	68242013	68242484	68242013	ID=Msa0038750-mRNA-1:exon:22213;Parent=Msa0038750-mRNA-1
chr1_1	exon	68242575	68242673	68242575	ID=Msa0038750-mRNA-1:exon:22212;Parent=Msa0038750-mRNA-1
chr1_1	exon	68243242	68243312	68243242	ID=Msa0038750-mRNA-1:exon:22211;Parent=Msa0038750-mRNA-1
chr1_1	exon	68243424	68243781	68243424	ID=Msa0038750-mRNA-1:exon:22210;Parent=Msa0038750-mRNA-1
chr1_1	exon	68244431	68244773	68244431	ID=Msa0038750-mRNA-1:exon:22209;Parent=Msa0038750-mRNA-1
chr1_1	five_prime_UTR	68244662	68244773	68244662	ID=Msa0038750-mRNA-1:five_prime_utr;Parent=Msa0038750-mRNA-1
chr1_1	CDS	68244431	68244661	68244431	ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1	CDS	68243424	68243781	68243424	ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1	CDS	68243242	68243312	68243242	ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1	CDS	68242575	68242673	68242575	ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1	CDS	68242383	68242484	68242383	ID=Msa0038750-mRNA-1:cds;Parent=Msa0038750-mRNA-1
chr1_1	three_prime_UTR	68242013	68242382	68242013	ID=Msa0038750-mRNA-1:three_prime_utr;Parent=Msa0038750-mRNA-1

Gene Sequence

>Msa0038750

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTTCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCCCGTGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGCCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGACTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCTATTCTTCTTCTCGGACATCTGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCTTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>Msa0038750

MALQGLSTVSVAVSISVRPSISNLVRISSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPRDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY*