AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744280 MtrunA17_Chr5g0446771 92.163 319 18 1 1 312 1 319 0.0 573
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744280 AT4G37000.1 53.929 280 124 2 36 312 41 318 2.46e-102 303

Find 66 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACGACCTTGCTTCTTC+TGG 0.137652 5_1:+64989437 None:intergenic
GTTTGAGATACAAGTTTATT+TGG 0.191207 5_1:-64987651 Msa0744280:exon
TAAGAATAAATAAATTATTA+TGG 0.227445 5_1:-64989647 Msa0744280:five_prime_UTR
CTCGAAAAGACCTTGTTCTT+TGG 0.238806 5_1:-64988088 Msa0744280:CDS
CAAAGCAAGTGTTGGGGATA+TGG 0.247429 5_1:-64987854 Msa0744280:CDS
ATCAGCTCGAACACAAAATT+TGG 0.277458 5_1:+64988155 None:intergenic
TTCTGTTTCTTGCTCTATAA+TGG 0.285724 5_1:-64989464 Msa0744280:CDS
CCCAACACTTGCTTTGAAAT+CGG 0.292400 5_1:+64987861 None:intergenic
AAGACATAAACATTTGTCTT+TGG 0.306980 5_1:-64989580 Msa0744280:five_prime_UTR
TTTCCATCTTATCTTCTTCA+AGG 0.311663 5_1:-64989510 Msa0744280:CDS
AGAACAAGAATTAGCATTGT+TGG 0.348949 5_1:+64988122 None:intergenic
TCAAGCTTTCCAAGGTTGTT+TGG 0.358482 5_1:-64987723 Msa0744280:CDS
AACAGTAAAATACTCCTTGA+TGG 0.363131 5_1:+64987671 None:intergenic
GCTACGACCTTGCTTCTTCT+GGG 0.370091 5_1:+64989438 None:intergenic
AAGACTATTGAGGTTGATCT+TGG 0.379733 5_1:-64987747 Msa0744280:CDS
AGAAGCTGCAAAACAGATAT+TGG 0.387915 5_1:-64987697 Msa0744280:CDS
CTCTTATAGTATTGAACATC+AGG 0.390571 5_1:+64989304 None:intergenic
TCCTACTTCTCTCTCGGAAC+AGG 0.405515 5_1:+64987818 None:intergenic
CCGATTTCAAAGCAAGTGTT+GGG 0.413297 5_1:-64987861 Msa0744280:CDS
CCAACACTTGCTTTGAAATC+GGG 0.426823 5_1:+64987862 None:intergenic
TTAGCATTGTTGGACTGCTT+CGG 0.427662 5_1:+64988132 None:intergenic
CCCGATTTCAAAGCAAGTGT+TGG 0.432798 5_1:-64987862 Msa0744280:CDS
CGATACACATAGGCAGGCTT+TGG 0.432959 5_1:-64988027 Msa0744280:CDS
GTGACATAAGGTTGAACCTC+TGG 0.461727 5_1:+64987996 None:intergenic
AAACCTTGAAGAAGATAAGA+TGG 0.464596 5_1:+64989507 None:intergenic
CTTGTTATAACATTTCAGTA+AGG 0.468071 5_1:+64987391 None:intergenic
ATCATTTGAACTGTTAAGAT+AGG 0.468826 5_1:+64988181 None:intergenic
CAATACTATAAGAGCAAGAA+TGG 0.480003 5_1:-64989295 Msa0744280:CDS
ATCAAGCATGAGATTCTTGT+GGG 0.484852 5_1:+64989384 None:intergenic
TTCCTCTCCTACTTCTCTCT+CGG 0.487400 5_1:+64987812 None:intergenic
ACAGATATTGGAAGCCATCA+AGG 0.487475 5_1:-64987685 Msa0744280:CDS
AGAAACAGAAGAACGAGAAG+TGG 0.491541 5_1:+64989477 None:intergenic
CTGAAATGTTATAACAAGAA+AGG 0.501994 5_1:-64987386 None:intergenic
GTTTGTTGGTGGTGTTAGAA+TGG 0.507388 5_1:-64987450 Msa0744280:three_prime_UTR
AGATGGAAAGTGATGAATGT+TGG 0.508445 5_1:+64989524 None:intergenic
ATCTTGGTTCAAGCTTTCCA+AGG 0.509846 5_1:-64987731 Msa0744280:CDS
GTGCATGCTGAGCTACCAAC+AGG 0.516588 5_1:-64988233 Msa0744280:CDS
TTGTGGGGTGCTGAAACATA+TGG 0.516911 5_1:+64989400 None:intergenic
TTGTTATAACATTTCAGTAA+GGG 0.531258 5_1:+64987392 None:intergenic
CATTAGAAACAAGACTATTG+AGG 0.540436 5_1:-64987757 Msa0744280:CDS
AAAGTGATGAATGTTGGAAA+TGG 0.543080 5_1:+64989530 None:intergenic
ACAGGGGAATCAGTGTTGCT+TGG 0.543335 5_1:+64989244 None:intergenic
TAAACTCGATACACATAGGC+AGG 0.546034 5_1:-64988033 Msa0744280:CDS
ATTCAGACAGAAAATGATGA+AGG 0.546561 5_1:-64987921 Msa0744280:CDS
AAAAGCGAAGAAGTGACATA+AGG 0.548015 5_1:+64987984 None:intergenic
GCTTCTGGACCAAACAACCT+TGG 0.551283 5_1:+64987714 None:intergenic
GCAAGTGTTGGGGATATGGT+TGG 0.554687 5_1:-64987850 Msa0744280:CDS
ATGCGAACAAATATAGCGGT+TGG 0.559048 5_1:+64987942 None:intergenic
ACATCAGGTGGAAGTGAACA+AGG 0.566315 5_1:+64989319 None:intergenic
ATATCTAATGATCCTCCTGT+TGG 0.577783 5_1:+64988218 None:intergenic
GATCAAGCATGAGATTCTTG+TGG 0.577920 5_1:+64989383 None:intergenic
GCCTGTTCCGAGAGAGAAGT+AGG 0.581979 5_1:-64987819 Msa0744280:CDS
TAAGGGATACATGCTTGAAG+TGG 0.587662 5_1:+64987409 None:intergenic
GGTAATCTGGCCAAAGAACA+AGG 0.591389 5_1:+64988078 None:intergenic
TTCCGAGAGAGAAGTAGGAG+AGG 0.601529 5_1:-64987814 Msa0744280:CDS
TTATAGTATTGAACATCAGG+TGG 0.606078 5_1:+64989307 None:intergenic
ATGGATACCCAGAAGAAGCA+AGG 0.631772 5_1:-64989445 Msa0744280:CDS
CGATTTCAAAGCAAGTGTTG+GGG 0.632172 5_1:-64987860 Msa0744280:CDS
ACACTAAACTCGATACACAT+AGG 0.635620 5_1:-64988037 Msa0744280:CDS
ATTTGTCTTTGGTTACACAA+TGG 0.658632 5_1:-64989569 Msa0744280:exon
CATGCTGAGCTACCAACAGG+AGG 0.671949 5_1:-64988230 Msa0744280:CDS
CTGAATGCGAACAAATATAG+CGG 0.692980 5_1:+64987938 None:intergenic
ACAATGGCAGTGATGATCTG+TGG 0.723586 5_1:-64989553 Msa0744280:CDS
TCAAGCATGAGATTCTTGTG+GGG 0.732179 5_1:+64989385 None:intergenic
TTACCTTAAAACTTTCTACG+AGG 0.733422 5_1:-64988060 Msa0744280:CDS
CGGTTGGAGATGCAACACTG+CGG 0.782235 5_1:+64987958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTTATGTTATTTTATT+AGG - chr5_1:64987897-64987916 Msa0744280:CDS 10.0%
!!! TATTGTTATGTTATTTTATT+AGG - chr5_1:64987897-64987916 Msa0744280:CDS 10.0%
!! TATACTCTAACATGAAAATA+TGG + chr5_1:64987849-64987868 None:intergenic 20.0%
!! TTCATGTTAGAGTATATATT+TGG - chr5_1:64987853-64987872 Msa0744280:CDS 20.0%
!! ATTATGTTTCTTCAACATAA+GGG + chr5_1:64988431-64988450 None:intergenic 20.0%
!! TCATATAACAAAACAATCAA+TGG + chr5_1:64988644-64988663 None:intergenic 20.0%
!! TTGTTATAACATTTCAGTAA+GGG + chr5_1:64989647-64989666 None:intergenic 20.0%
!! TATACTCTAACATGAAAATA+TGG + chr5_1:64987849-64987868 None:intergenic 20.0%
!! TTCATGTTAGAGTATATATT+TGG - chr5_1:64987853-64987872 Msa0744280:CDS 20.0%
!! ATTATGTTTCTTCAACATAA+GGG + chr5_1:64988431-64988450 None:intergenic 20.0%
!! TCATATAACAAAACAATCAA+TGG + chr5_1:64988644-64988663 None:intergenic 20.0%
!! TTGTTATAACATTTCAGTAA+GGG + chr5_1:64989647-64989666 None:intergenic 20.0%
! GAACAAAAGAACATAAAAAG+AGG - chr5_1:64987416-64987435 Msa0744280:three_prime_UTR 25.0%
! AAGACATAAACATTTGTCTT+TGG - chr5_1:64987456-64987475 Msa0744280:three_prime_UTR 25.0%
!!! GAATTTTGAGAGAAAAAAGT+AGG + chr5_1:64987827-64987846 None:intergenic 25.0%
! TATATATTTGGTTGAGAACT+AGG - chr5_1:64987865-64987884 Msa0744280:CDS 25.0%
! ATGCAAATAACCAAATTAAG+TGG + chr5_1:64988069-64988088 None:intergenic 25.0%
! TTCCTTAATTGTGATTGTTT+GGG - chr5_1:64988272-64988291 Msa0744280:intron 25.0%
! CTATCTAACTATCTACAAAT+AGG - chr5_1:64988355-64988374 Msa0744280:intron 25.0%
! CATTATGTTTCTTCAACATA+AGG + chr5_1:64988432-64988451 None:intergenic 25.0%
!!! TATTTTTCCATTAGTTCTCT+AGG - chr5_1:64988571-64988590 Msa0744280:intron 25.0%
!! TCTCAGATAGATTTTGTAAT+GGG - chr5_1:64988773-64988792 Msa0744280:intron 25.0%
! ATCATTTGAACTGTTAAGAT+AGG + chr5_1:64988858-64988877 None:intergenic 25.0%
!!! TAGAAAGTTTTAAGGTAATC+TGG + chr5_1:64988974-64988993 None:intergenic 25.0%
!! GTTTGAGATACAAGTTTATT+TGG - chr5_1:64989385-64989404 Msa0744280:CDS 25.0%
!!! TAATTGTTTTGTACGTTTGT+TGG - chr5_1:64989572-64989591 Msa0744280:exon 25.0%
!! CTTGTTATAACATTTCAGTA+AGG + chr5_1:64989648-64989667 None:intergenic 25.0%
! GAACAAAAGAACATAAAAAG+AGG - chr5_1:64987416-64987435 Msa0744280:three_prime_UTR 25.0%
! AAGACATAAACATTTGTCTT+TGG - chr5_1:64987456-64987475 Msa0744280:three_prime_UTR 25.0%
!!! GAATTTTGAGAGAAAAAAGT+AGG + chr5_1:64987827-64987846 None:intergenic 25.0%
! TATATATTTGGTTGAGAACT+AGG - chr5_1:64987865-64987884 Msa0744280:CDS 25.0%
! ATGCAAATAACCAAATTAAG+TGG + chr5_1:64988069-64988088 None:intergenic 25.0%
! TTCCTTAATTGTGATTGTTT+GGG - chr5_1:64988272-64988291 Msa0744280:intron 25.0%
! CTATCTAACTATCTACAAAT+AGG - chr5_1:64988355-64988374 Msa0744280:intron 25.0%
! CATTATGTTTCTTCAACATA+AGG + chr5_1:64988432-64988451 None:intergenic 25.0%
!!! TATTTTTCCATTAGTTCTCT+AGG - chr5_1:64988571-64988590 Msa0744280:intron 25.0%
!! TCTCAGATAGATTTTGTAAT+GGG - chr5_1:64988773-64988792 Msa0744280:intron 25.0%
! ATCATTTGAACTGTTAAGAT+AGG + chr5_1:64988858-64988877 None:intergenic 25.0%
!!! TAGAAAGTTTTAAGGTAATC+TGG + chr5_1:64988974-64988993 None:intergenic 25.0%
!! GTTTGAGATACAAGTTTATT+TGG - chr5_1:64989385-64989404 Msa0744280:CDS 25.0%
!!! TAATTGTTTTGTACGTTTGT+TGG - chr5_1:64989572-64989591 Msa0744280:exon 25.0%
!! CTTGTTATAACATTTCAGTA+AGG + chr5_1:64989648-64989667 None:intergenic 25.0%
ATTTGTCTTTGGTTACACAA+TGG - chr5_1:64987467-64987486 Msa0744280:three_prime_UTR 30.0%
AAAGTGATGAATGTTGGAAA+TGG + chr5_1:64987509-64987528 None:intergenic 30.0%
TTTCCATCTTATCTTCTTCA+AGG - chr5_1:64987526-64987545 Msa0744280:three_prime_UTR 30.0%
AAACCTTGAAGAAGATAAGA+TGG + chr5_1:64987532-64987551 None:intergenic 30.0%
! TTCTGTTTCTTGCTCTATAA+TGG - chr5_1:64987572-64987591 Msa0744280:three_prime_UTR 30.0%
! TTATAGTATTGAACATCAGG+TGG + chr5_1:64987732-64987751 None:intergenic 30.0%
! CTCTTATAGTATTGAACATC+AGG + chr5_1:64987735-64987754 None:intergenic 30.0%
CAATACTATAAGAGCAAGAA+TGG - chr5_1:64987741-64987760 Msa0744280:CDS 30.0%
AAAGTAGGAGGAAAATTACA+GGG + chr5_1:64987812-64987831 None:intergenic 30.0%
AAAAGTAGGAGGAAAATTAC+AGG + chr5_1:64987813-64987832 None:intergenic 30.0%
!! TTTTGAGAGAAAAAAGTAGG+AGG + chr5_1:64987824-64987843 None:intergenic 30.0%
! TTGCTTACTTTAGAGAATGA+AGG - chr5_1:64988145-64988164 Msa0744280:CDS 30.0%
AAGGACCACTTTAATCAAAT+TGG - chr5_1:64988164-64988183 Msa0744280:CDS 30.0%
CATTGCCAATTTGATTAAAG+TGG + chr5_1:64988172-64988191 None:intergenic 30.0%
GTTCCTTAATTGTGATTGTT+TGG - chr5_1:64988271-64988290 Msa0744280:intron 30.0%
TACCCAAACAATCACAATTA+AGG + chr5_1:64988277-64988296 None:intergenic 30.0%
GAAGAAACATAATGTTCATG+AGG - chr5_1:64988438-64988457 Msa0744280:intron 30.0%
TCAAATAAGCTAATCCAAAC+AGG + chr5_1:64988464-64988483 None:intergenic 30.0%
! GTCTCAGATAGATTTTGTAA+TGG - chr5_1:64988772-64988791 Msa0744280:intron 30.0%
AGAACAAGAATTAGCATTGT+TGG + chr5_1:64988917-64988936 None:intergenic 30.0%
TTACCTTAAAACTTTCTACG+AGG - chr5_1:64988976-64988995 Msa0744280:intron 30.0%
ATTCAGACAGAAAATGATGA+AGG - chr5_1:64989115-64989134 Msa0744280:intron 30.0%
GCTTATCTGATAAAAAGAGA+TGG - chr5_1:64989253-64989272 Msa0744280:CDS 30.0%
CATTAGAAACAAGACTATTG+AGG - chr5_1:64989279-64989298 Msa0744280:CDS 30.0%
AACAGTAAAATACTCCTTGA+TGG + chr5_1:64989368-64989387 None:intergenic 30.0%
ATTTGTCTTTGGTTACACAA+TGG - chr5_1:64987467-64987486 Msa0744280:three_prime_UTR 30.0%
AAAGTGATGAATGTTGGAAA+TGG + chr5_1:64987509-64987528 None:intergenic 30.0%
TTTCCATCTTATCTTCTTCA+AGG - chr5_1:64987526-64987545 Msa0744280:three_prime_UTR 30.0%
AAACCTTGAAGAAGATAAGA+TGG + chr5_1:64987532-64987551 None:intergenic 30.0%
! TTCTGTTTCTTGCTCTATAA+TGG - chr5_1:64987572-64987591 Msa0744280:three_prime_UTR 30.0%
! TTATAGTATTGAACATCAGG+TGG + chr5_1:64987732-64987751 None:intergenic 30.0%
! CTCTTATAGTATTGAACATC+AGG + chr5_1:64987735-64987754 None:intergenic 30.0%
CAATACTATAAGAGCAAGAA+TGG - chr5_1:64987741-64987760 Msa0744280:CDS 30.0%
AAAGTAGGAGGAAAATTACA+GGG + chr5_1:64987812-64987831 None:intergenic 30.0%
AAAAGTAGGAGGAAAATTAC+AGG + chr5_1:64987813-64987832 None:intergenic 30.0%
!! TTTTGAGAGAAAAAAGTAGG+AGG + chr5_1:64987824-64987843 None:intergenic 30.0%
! TTGCTTACTTTAGAGAATGA+AGG - chr5_1:64988145-64988164 Msa0744280:CDS 30.0%
AAGGACCACTTTAATCAAAT+TGG - chr5_1:64988164-64988183 Msa0744280:CDS 30.0%
CATTGCCAATTTGATTAAAG+TGG + chr5_1:64988172-64988191 None:intergenic 30.0%
GTTCCTTAATTGTGATTGTT+TGG - chr5_1:64988271-64988290 Msa0744280:intron 30.0%
TACCCAAACAATCACAATTA+AGG + chr5_1:64988277-64988296 None:intergenic 30.0%
GAAGAAACATAATGTTCATG+AGG - chr5_1:64988438-64988457 Msa0744280:intron 30.0%
TCAAATAAGCTAATCCAAAC+AGG + chr5_1:64988464-64988483 None:intergenic 30.0%
! GTCTCAGATAGATTTTGTAA+TGG - chr5_1:64988772-64988791 Msa0744280:intron 30.0%
AGAACAAGAATTAGCATTGT+TGG + chr5_1:64988917-64988936 None:intergenic 30.0%
TTACCTTAAAACTTTCTACG+AGG - chr5_1:64988976-64988995 Msa0744280:intron 30.0%
ATTCAGACAGAAAATGATGA+AGG - chr5_1:64989115-64989134 Msa0744280:intron 30.0%
GCTTATCTGATAAAAAGAGA+TGG - chr5_1:64989253-64989272 Msa0744280:CDS 30.0%
CATTAGAAACAAGACTATTG+AGG - chr5_1:64989279-64989298 Msa0744280:CDS 30.0%
AACAGTAAAATACTCCTTGA+TGG + chr5_1:64989368-64989387 None:intergenic 30.0%
AGATGGAAAGTGATGAATGT+TGG + chr5_1:64987515-64987534 None:intergenic 35.0%
ATCAAGCATGAGATTCTTGT+GGG + chr5_1:64987655-64987674 None:intergenic 35.0%
AAGTAGGAGGAAAATTACAG+GGG + chr5_1:64987811-64987830 None:intergenic 35.0%
! TAGAGTGTCTAAAGTGAGTT+TGG + chr5_1:64987979-64987998 None:intergenic 35.0%
TTACTAACTACTCACCTTAG+AGG + chr5_1:64988016-64988035 None:intergenic 35.0%
GTGATTTCGACCACTTAATT+TGG - chr5_1:64988056-64988075 Msa0744280:CDS 35.0%
GCTTATTTGAGCTTACATAC+TGG - chr5_1:64988474-64988493 Msa0744280:intron 35.0%
AAGCTATCCTAGAGAACTAA+TGG + chr5_1:64988581-64988600 None:intergenic 35.0%
CATGTGTTGGATAAACAACT+TGG + chr5_1:64988693-64988712 None:intergenic 35.0%
CAAGTTGTTTATCCAACACA+TGG - chr5_1:64988691-64988710 Msa0744280:intron 35.0%
!! TAGATTTTGTAATGGGAAGC+TGG - chr5_1:64988780-64988799 Msa0744280:intron 35.0%
!! AGATTTTGTAATGGGAAGCT+GGG - chr5_1:64988781-64988800 Msa0744280:intron 35.0%
ATATCTAATGATCCTCCTGT+TGG + chr5_1:64988821-64988840 None:intergenic 35.0%
ATCAGCTCGAACACAAAATT+TGG + chr5_1:64988884-64988903 None:intergenic 35.0%
! TGTCCTCGTAGAAAGTTTTA+AGG + chr5_1:64988982-64989001 None:intergenic 35.0%
ACACTAAACTCGATACACAT+AGG - chr5_1:64988999-64989018 Msa0744280:intron 35.0%
AAAAGCGAAGAAGTGACATA+AGG + chr5_1:64989055-64989074 None:intergenic 35.0%
CTGAATGCGAACAAATATAG+CGG + chr5_1:64989101-64989120 None:intergenic 35.0%
! AAGACTATTGAGGTTGATCT+TGG - chr5_1:64989289-64989308 Msa0744280:CDS 35.0%
! AATATCTGTTTTGCAGCTTC+TGG + chr5_1:64989340-64989359 None:intergenic 35.0%
AGAAGCTGCAAAACAGATAT+TGG - chr5_1:64989339-64989358 Msa0744280:CDS 35.0%
!! TTGTTTTGTACGTTTGTTGG+TGG - chr5_1:64989575-64989594 Msa0744280:five_prime_UTR 35.0%
AGATGGAAAGTGATGAATGT+TGG + chr5_1:64987515-64987534 None:intergenic 35.0%
ATCAAGCATGAGATTCTTGT+GGG + chr5_1:64987655-64987674 None:intergenic 35.0%
AAGTAGGAGGAAAATTACAG+GGG + chr5_1:64987811-64987830 None:intergenic 35.0%
! TAGAGTGTCTAAAGTGAGTT+TGG + chr5_1:64987979-64987998 None:intergenic 35.0%
TTACTAACTACTCACCTTAG+AGG + chr5_1:64988016-64988035 None:intergenic 35.0%
GTGATTTCGACCACTTAATT+TGG - chr5_1:64988056-64988075 Msa0744280:CDS 35.0%
GCTTATTTGAGCTTACATAC+TGG - chr5_1:64988474-64988493 Msa0744280:intron 35.0%
AAGCTATCCTAGAGAACTAA+TGG + chr5_1:64988581-64988600 None:intergenic 35.0%
CATGTGTTGGATAAACAACT+TGG + chr5_1:64988693-64988712 None:intergenic 35.0%
CAAGTTGTTTATCCAACACA+TGG - chr5_1:64988691-64988710 Msa0744280:intron 35.0%
!! TAGATTTTGTAATGGGAAGC+TGG - chr5_1:64988780-64988799 Msa0744280:intron 35.0%
!! AGATTTTGTAATGGGAAGCT+GGG - chr5_1:64988781-64988800 Msa0744280:intron 35.0%
ATATCTAATGATCCTCCTGT+TGG + chr5_1:64988821-64988840 None:intergenic 35.0%
ATCAGCTCGAACACAAAATT+TGG + chr5_1:64988884-64988903 None:intergenic 35.0%
! TGTCCTCGTAGAAAGTTTTA+AGG + chr5_1:64988982-64989001 None:intergenic 35.0%
ACACTAAACTCGATACACAT+AGG - chr5_1:64988999-64989018 Msa0744280:intron 35.0%
AAAAGCGAAGAAGTGACATA+AGG + chr5_1:64989055-64989074 None:intergenic 35.0%
CTGAATGCGAACAAATATAG+CGG + chr5_1:64989101-64989120 None:intergenic 35.0%
! AAGACTATTGAGGTTGATCT+TGG - chr5_1:64989289-64989308 Msa0744280:CDS 35.0%
! AATATCTGTTTTGCAGCTTC+TGG + chr5_1:64989340-64989359 None:intergenic 35.0%
AGAAGCTGCAAAACAGATAT+TGG - chr5_1:64989339-64989358 Msa0744280:CDS 35.0%
!! TTGTTTTGTACGTTTGTTGG+TGG - chr5_1:64989575-64989594 Msa0744280:five_prime_UTR 35.0%
AGAAACAGAAGAACGAGAAG+TGG + chr5_1:64987562-64987581 None:intergenic 40.0%
! GCAAGGTCGTAGCAAATTTT+TGG - chr5_1:64987608-64987627 Msa0744280:three_prime_UTR 40.0%
TCAAGCATGAGATTCTTGTG+GGG + chr5_1:64987654-64987673 None:intergenic 40.0%
GATCAAGCATGAGATTCTTG+TGG + chr5_1:64987656-64987675 None:intergenic 40.0%
TCAACCATGTTTCTCCTCTA+AGG - chr5_1:64987999-64988018 Msa0744280:CDS 40.0%
ATCTACCAACCAGTGAATCA+AGG + chr5_1:64988245-64988264 None:intergenic 40.0%
TAATGTTCATGAGGCCTGTT+TGG - chr5_1:64988447-64988466 Msa0744280:intron 40.0%
TCCAACACATGGTCTAGTTA+TGG - chr5_1:64988702-64988721 Msa0744280:intron 40.0%
ACCATAACTAGACCATGTGT+TGG + chr5_1:64988706-64988725 None:intergenic 40.0%
TTAGCATTGTTGGACTGCTT+CGG + chr5_1:64988907-64988926 None:intergenic 40.0%
! CAAAGAACAAGGTCTTTTCG+AGG + chr5_1:64988950-64988969 None:intergenic 40.0%
CTCGAAAAGACCTTGTTCTT+TGG - chr5_1:64988948-64988967 Msa0744280:intron 40.0%
TAAACTCGATACACATAGGC+AGG - chr5_1:64989003-64989022 Msa0744280:intron 40.0%
!! GGCTTTGGAAAAAATTCCAG+AGG - chr5_1:64989024-64989043 Msa0744280:intron 40.0%
ATGCGAACAAATATAGCGGT+TGG + chr5_1:64989097-64989116 None:intergenic 40.0%
!! CCAACACTTGCTTTGAAATC+GGG + chr5_1:64989177-64989196 None:intergenic 40.0%
!! CCCAACACTTGCTTTGAAAT+CGG + chr5_1:64989178-64989197 None:intergenic 40.0%
CCGATTTCAAAGCAAGTGTT+GGG - chr5_1:64989175-64989194 Msa0744280:intron 40.0%
! CGATTTCAAAGCAAGTGTTG+GGG - chr5_1:64989176-64989195 Msa0744280:intron 40.0%
ATCTTGGTTCAAGCTTTCCA+AGG - chr5_1:64989305-64989324 Msa0744280:CDS 40.0%
TCAAGCTTTCCAAGGTTGTT+TGG - chr5_1:64989313-64989332 Msa0744280:CDS 40.0%
ACAGATATTGGAAGCCATCA+AGG - chr5_1:64989351-64989370 Msa0744280:CDS 40.0%
!! GTTTGTTGGTGGTGTTAGAA+TGG - chr5_1:64989586-64989605 Msa0744280:five_prime_UTR 40.0%
TAAGGGATACATGCTTGAAG+TGG + chr5_1:64989630-64989649 None:intergenic 40.0%
AGAAACAGAAGAACGAGAAG+TGG + chr5_1:64987562-64987581 None:intergenic 40.0%
! GCAAGGTCGTAGCAAATTTT+TGG - chr5_1:64987608-64987627 Msa0744280:three_prime_UTR 40.0%
TCAAGCATGAGATTCTTGTG+GGG + chr5_1:64987654-64987673 None:intergenic 40.0%
GATCAAGCATGAGATTCTTG+TGG + chr5_1:64987656-64987675 None:intergenic 40.0%
TCAACCATGTTTCTCCTCTA+AGG - chr5_1:64987999-64988018 Msa0744280:CDS 40.0%
ATCTACCAACCAGTGAATCA+AGG + chr5_1:64988245-64988264 None:intergenic 40.0%
TAATGTTCATGAGGCCTGTT+TGG - chr5_1:64988447-64988466 Msa0744280:intron 40.0%
TCCAACACATGGTCTAGTTA+TGG - chr5_1:64988702-64988721 Msa0744280:intron 40.0%
ACCATAACTAGACCATGTGT+TGG + chr5_1:64988706-64988725 None:intergenic 40.0%
TTAGCATTGTTGGACTGCTT+CGG + chr5_1:64988907-64988926 None:intergenic 40.0%
! CAAAGAACAAGGTCTTTTCG+AGG + chr5_1:64988950-64988969 None:intergenic 40.0%
CTCGAAAAGACCTTGTTCTT+TGG - chr5_1:64988948-64988967 Msa0744280:intron 40.0%
TAAACTCGATACACATAGGC+AGG - chr5_1:64989003-64989022 Msa0744280:intron 40.0%
!! GGCTTTGGAAAAAATTCCAG+AGG - chr5_1:64989024-64989043 Msa0744280:intron 40.0%
ATGCGAACAAATATAGCGGT+TGG + chr5_1:64989097-64989116 None:intergenic 40.0%
!! CCAACACTTGCTTTGAAATC+GGG + chr5_1:64989177-64989196 None:intergenic 40.0%
!! CCCAACACTTGCTTTGAAAT+CGG + chr5_1:64989178-64989197 None:intergenic 40.0%
CCGATTTCAAAGCAAGTGTT+GGG - chr5_1:64989175-64989194 Msa0744280:intron 40.0%
! CGATTTCAAAGCAAGTGTTG+GGG - chr5_1:64989176-64989195 Msa0744280:intron 40.0%
ATCTTGGTTCAAGCTTTCCA+AGG - chr5_1:64989305-64989324 Msa0744280:CDS 40.0%
TCAAGCTTTCCAAGGTTGTT+TGG - chr5_1:64989313-64989332 Msa0744280:CDS 40.0%
ACAGATATTGGAAGCCATCA+AGG - chr5_1:64989351-64989370 Msa0744280:CDS 40.0%
!! GTTTGTTGGTGGTGTTAGAA+TGG - chr5_1:64989586-64989605 Msa0744280:five_prime_UTR 40.0%
TAAGGGATACATGCTTGAAG+TGG + chr5_1:64989630-64989649 None:intergenic 40.0%
ACAATGGCAGTGATGATCTG+TGG - chr5_1:64987483-64987502 Msa0744280:three_prime_UTR 45.0%
ATGGATACCCAGAAGAAGCA+AGG - chr5_1:64987591-64987610 Msa0744280:three_prime_UTR 45.0%
!! TTGTGGGGTGCTGAAACATA+TGG + chr5_1:64987639-64987658 None:intergenic 45.0%
ACATCAGGTGGAAGTGAACA+AGG + chr5_1:64987720-64987739 None:intergenic 45.0%
CTCACCTTAGAGGAGAAACA+TGG + chr5_1:64988006-64988025 None:intergenic 45.0%
TAGCCTAAGCCTTGATTCAC+TGG - chr5_1:64988233-64988252 Msa0744280:CDS 45.0%
CAACCAGTGAATCAAGGCTT+AGG + chr5_1:64988239-64988258 None:intergenic 45.0%
CTAAGCCTTGATTCACTGGT+TGG - chr5_1:64988237-64988256 Msa0744280:CDS 45.0%
!! AGAACAAGGTCTTTTCGAGG+TGG + chr5_1:64988947-64988966 None:intergenic 45.0%
GGTAATCTGGCCAAAGAACA+AGG + chr5_1:64988961-64988980 None:intergenic 45.0%
GTGACATAAGGTTGAACCTC+TGG + chr5_1:64989043-64989062 None:intergenic 45.0%
CCCGATTTCAAAGCAAGTGT+TGG - chr5_1:64989174-64989193 Msa0744280:intron 45.0%
!! CAAAGCAAGTGTTGGGGATA+TGG - chr5_1:64989182-64989201 Msa0744280:intron 45.0%
TTCCTCTCCTACTTCTCTCT+CGG + chr5_1:64989227-64989246 None:intergenic 45.0%
ACAATGGCAGTGATGATCTG+TGG - chr5_1:64987483-64987502 Msa0744280:three_prime_UTR 45.0%
ATGGATACCCAGAAGAAGCA+AGG - chr5_1:64987591-64987610 Msa0744280:three_prime_UTR 45.0%
!! TTGTGGGGTGCTGAAACATA+TGG + chr5_1:64987639-64987658 None:intergenic 45.0%
ACATCAGGTGGAAGTGAACA+AGG + chr5_1:64987720-64987739 None:intergenic 45.0%
CTCACCTTAGAGGAGAAACA+TGG + chr5_1:64988006-64988025 None:intergenic 45.0%
TAGCCTAAGCCTTGATTCAC+TGG - chr5_1:64988233-64988252 Msa0744280:CDS 45.0%
CAACCAGTGAATCAAGGCTT+AGG + chr5_1:64988239-64988258 None:intergenic 45.0%
CTAAGCCTTGATTCACTGGT+TGG - chr5_1:64988237-64988256 Msa0744280:CDS 45.0%
!! AGAACAAGGTCTTTTCGAGG+TGG + chr5_1:64988947-64988966 None:intergenic 45.0%
GGTAATCTGGCCAAAGAACA+AGG + chr5_1:64988961-64988980 None:intergenic 45.0%
GTGACATAAGGTTGAACCTC+TGG + chr5_1:64989043-64989062 None:intergenic 45.0%
CCCGATTTCAAAGCAAGTGT+TGG - chr5_1:64989174-64989193 Msa0744280:intron 45.0%
!! CAAAGCAAGTGTTGGGGATA+TGG - chr5_1:64989182-64989201 Msa0744280:intron 45.0%
TTCCTCTCCTACTTCTCTCT+CGG + chr5_1:64989227-64989246 None:intergenic 45.0%
!! TAAGAATAAATAAATTATTA+TGG - chr5_1:64987389-64987408 Msa0744280:three_prime_UTR 5.0%
!!! ATTATTTTAATTACTTATTA+AGG - chr5_1:64988317-64988336 Msa0744280:intron 5.0%
!! TAAGAATAAATAAATTATTA+TGG - chr5_1:64987389-64987408 Msa0744280:three_prime_UTR 5.0%
!!! ATTATTTTAATTACTTATTA+AGG - chr5_1:64988317-64988336 Msa0744280:intron 5.0%
GCTACGACCTTGCTTCTTCT+GGG + chr5_1:64987601-64987620 None:intergenic 50.0%
TGCTACGACCTTGCTTCTTC+TGG + chr5_1:64987602-64987621 None:intergenic 50.0%
! ACAGGGGAATCAGTGTTGCT+TGG + chr5_1:64987795-64987814 None:intergenic 50.0%
CGATACACATAGGCAGGCTT+TGG - chr5_1:64989009-64989028 Msa0744280:intron 50.0%
!! GCAAGTGTTGGGGATATGGT+TGG - chr5_1:64989186-64989205 Msa0744280:intron 50.0%
TCCTACTTCTCTCTCGGAAC+AGG + chr5_1:64989221-64989240 None:intergenic 50.0%
TTCCGAGAGAGAAGTAGGAG+AGG - chr5_1:64989222-64989241 Msa0744280:intron 50.0%
GCTTCTGGACCAAACAACCT+TGG + chr5_1:64989325-64989344 None:intergenic 50.0%
GCTACGACCTTGCTTCTTCT+GGG + chr5_1:64987601-64987620 None:intergenic 50.0%
TGCTACGACCTTGCTTCTTC+TGG + chr5_1:64987602-64987621 None:intergenic 50.0%
! ACAGGGGAATCAGTGTTGCT+TGG + chr5_1:64987795-64987814 None:intergenic 50.0%
CGATACACATAGGCAGGCTT+TGG - chr5_1:64989009-64989028 Msa0744280:intron 50.0%
!! GCAAGTGTTGGGGATATGGT+TGG - chr5_1:64989186-64989205 Msa0744280:intron 50.0%
TCCTACTTCTCTCTCGGAAC+AGG + chr5_1:64989221-64989240 None:intergenic 50.0%
TTCCGAGAGAGAAGTAGGAG+AGG - chr5_1:64989222-64989241 Msa0744280:intron 50.0%
GCTTCTGGACCAAACAACCT+TGG + chr5_1:64989325-64989344 None:intergenic 50.0%
GTGCATGCTGAGCTACCAAC+AGG - chr5_1:64988803-64988822 Msa0744280:intron 55.0%
CATGCTGAGCTACCAACAGG+AGG - chr5_1:64988806-64988825 Msa0744280:intron 55.0%
CGGTTGGAGATGCAACACTG+CGG + chr5_1:64989081-64989100 None:intergenic 55.0%
GCCTGTTCCGAGAGAGAAGT+AGG - chr5_1:64989217-64989236 Msa0744280:intron 55.0%
GTGCATGCTGAGCTACCAAC+AGG - chr5_1:64988803-64988822 Msa0744280:intron 55.0%
CATGCTGAGCTACCAACAGG+AGG - chr5_1:64988806-64988825 Msa0744280:intron 55.0%
CGGTTGGAGATGCAACACTG+CGG + chr5_1:64989081-64989100 None:intergenic 55.0%
GCCTGTTCCGAGAGAGAAGT+AGG - chr5_1:64989217-64989236 Msa0744280:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64987387 64989671 64987387 ID=Msa0744280;Name=Msa0744280
chr5_1 mRNA 64987387 64989671 64987387 ID=Msa0744280-mRNA-1;Parent=Msa0744280;Name=Msa0744280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=99|1|1|1|1|1|2|281|312
chr5_1 exon 64987387 64988279 64987387 ID=Msa0744280-mRNA-1:exon:19277;Parent=Msa0744280-mRNA-1
chr5_1 exon 64989246 64989671 64989246 ID=Msa0744280-mRNA-1:exon:19276;Parent=Msa0744280-mRNA-1
chr5_1 five_prime_UTR 64989573 64989671 64989573 ID=Msa0744280-mRNA-1:five_prime_utr;Parent=Msa0744280-mRNA-1
chr5_1 CDS 64989246 64989572 64989246 ID=Msa0744280-mRNA-1:cds;Parent=Msa0744280-mRNA-1
chr5_1 CDS 64987668 64988279 64987668 ID=Msa0744280-mRNA-1:cds;Parent=Msa0744280-mRNA-1
chr5_1 three_prime_UTR 64987387 64987667 64987387 ID=Msa0744280-mRNA-1:three_prime_utr;Parent=Msa0744280-mRNA-1
Gene Sequence

>Msa0744280

ATGGCAGTGATGATCTGTGGCCATTTCCAACATTCATCACTTTCCATCTTATCTTCTTCAAGGTTTCATCTTTCCACTTCTCGTTCTTCTGTTTCTTGCTCTATAATGGATACCCAGAAGAAGCAAGGTCGTAGCAAATTTTTGGAATTTCCATATGTTTCAGCACCCCACAAGAATCTCATGCTTGATCTTGTTTCAACAGTAGAAGATCGCTTTGAATCTCATCTTCTTCCTTGTTCACTTCCACCTGATGTTCAATACTATAAGAGCAAGAATGGTACTTCTCAAGTTTCATTGCATATTAGACCAAGCAACACTGATTCCCCTATAGATTTTGTAATGGGAAGCTGGGTGCATGCTGAGCTACCAACAGGAGGATCATTAGATATAACATCTCTTTCAGCCTATCTTAACAGTTCAAATGATGCACCAAATTTTGTGTTCGAGCTGATCCGAAGCAGTCCAACAATGCTAATTCTTGTTCTTGATTTGCCACCTCGAAAAGACCTTGTTCTTTGGCCAGATTACCTTAAAACTTTCTACGAGGACACTAAACTCGATACACATAGGCAGGCTTTGGAAAAAATTCCAGAGGTTCAACCTTATGTCACTTCTTCGCTTTTCATCCGCAGTGTTGCATCTCCAACCGCTATATTTGTTCGCATTCAGACAGAAAATGATGAAGGAGAGCAAATAGACGAGATCATCAAGAACAATATTGACCCGATTTCAAAGCAAGTGTTGGGGATATGGTTGGATCATTGCGCCTGTTCCGAGAGAGAAGTAGGAGAGGAAGATAAAGCTTATCTGATAAAAAGAGATGGTGTCATTAGAAACAAGACTATTGAGGTTGATCTTGGTTCAAGCTTTCCAAGGTTGTTTGGTCCAGAAGCTGCAAAACAGATATTGGAAGCCATCAAGGAGTATTTTACTGTTTGA

Protein sequence

>Msa0744280

MAVMICGHFQHSSLSILSSSRFHLSTSRSSVSCSIMDTQKKQGRSKFLEFPYVSAPHKNLMLDLVSTVEDRFESHLLPCSLPPDVQYYKSKNGTSQVSLHIRPSNTDSPIDFVMGSWVHAELPTGGSLDITSLSAYLNSSNDAPNFVFELIRSSPTMLILVLDLPPRKDLVLWPDYLKTFYEDTKLDTHRQALEKIPEVQPYVTSSLFIRSVASPTAIFVRIQTENDEGEQIDEIIKNNIDPISKQVLGIWLDHCACSEREVGEEDKAYLIKRDGVIRNKTIEVDLGSSFPRLFGPEAAKQILEAIKEYFTV*