AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428300 MtrunA17_Chr3g0131571 95.597 159 6 1 52 209 1 159 2.85e-110 312
Msa0428300 MtrunA17_Chr5g0395851 50.000 60 24 2 106 161 181 238 8.07e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428300 AT5G51010.1 60.377 159 55 4 52 208 1 153 3.60e-60 186
Msa0428300 AT5G17170.1 41.584 101 33 5 106 201 180 259 2.03e-12 65.1

Find 68 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCAATTGCTTCATCTCTT+TGG 0.237136 3_2:+79123872 None:intergenic
AACATTCTTGTGCAAGCTAT+TGG 0.258906 3_2:+79123549 None:intergenic
AAAGAACATGAATGCATTAA+AGG 0.272507 3_2:+79123631 None:intergenic
GTTGATTAGGATGAAGTAAA+AGG 0.290725 3_2:+79124792 None:intergenic
AATCAACTACAAGTTTCTTA+TGG 0.292009 3_2:-79124776 Msa0428300:CDS
TGAGTCTGTAAGGGTGTAAT+TGG 0.306471 3_2:+79125039 None:intergenic
TAAGAAACTTGTAGTTGATT+AGG 0.306861 3_2:+79124779 None:intergenic
CCAGGGCAGAAGTATTTATC+AGG 0.317364 3_2:+79124566 None:intergenic
AAAGATGTCTTGAGAGTAGA+TGG 0.349045 3_2:+79124833 None:intergenic
TAGGATGAAGTAAAAGGTTA+AGG 0.356489 3_2:+79124798 None:intergenic
ACGACAGATATAAGCTTGTT+TGG 0.361476 3_2:+79124724 None:intergenic
ATTGAACAGATGGAACTAAA+AGG 0.366566 3_2:+79123574 None:intergenic
GTGGGAGTTGTAGTTCTTGC+AGG 0.375454 3_2:-79123726 Msa0428300:CDS
CTCCAAAGAGATGAAGCAAT+TGG 0.389726 3_2:-79123874 Msa0428300:CDS
ACTCCCACGGCAACTGCAAT+AGG 0.395621 3_2:+79123741 None:intergenic
TTGTGTGTTGTGGAAAGTTC+TGG 0.402170 3_2:+79125012 None:intergenic
TGAACAAAAGGCTTAAAGTA+TGG 0.404906 3_2:-79123445 Msa0428300:three_prime_UTR
ATCTTCGAAGATTCTTCCTC+TGG 0.407873 3_2:+79124952 None:intergenic
ATAGGGCTTAAACCTTCGTT+TGG 0.408207 3_2:+79123957 None:intergenic
AGCTACACGCATGGTAAACC+TGG 0.428236 3_2:+79124748 None:intergenic
TTTGTTGACATCTGTTGCAT+AGG 0.431914 3_2:+79123939 None:intergenic
GTTCAGTCATAGGTGGCAAC+TGG 0.435640 3_2:+79123463 None:intergenic
TTGTTGACATCTGTTGCATA+GGG 0.437509 3_2:+79123940 None:intergenic
CTTCCTCTGGCTATGAATTG+AGG 0.442929 3_2:+79124965 None:intergenic
AGATCAAAGAGAAATCAAAA+TGG 0.446891 3_2:-79124933 Msa0428300:CDS
TGTCTTGAGAGTAGATGGAT+TGG 0.449903 3_2:+79124838 None:intergenic
TTGGAGAGTGGTCGGAGGGT+AGG 0.455499 3_2:+79124857 None:intergenic
AGGATGAAGTAAAAGGTTAA+GGG 0.468286 3_2:+79124799 None:intergenic
TAGGGCTTAAACCTTCGTTT+GGG 0.473259 3_2:+79123958 None:intergenic
GCCACCTATGACTGAACAAA+AGG 0.477124 3_2:-79123457 Msa0428300:three_prime_UTR
TTATCAGGCAATTTATCAAA+GGG 0.481492 3_2:+79124581 None:intergenic
TTCTGGTGATTGAGTCTGTA+AGG 0.481972 3_2:+79125029 None:intergenic
GTGATAATCTTGTAGTGTGA+AGG 0.484953 3_2:+79124891 None:intergenic
TCCAAAGAGATGAAGCAATT+GGG 0.489224 3_2:-79123873 Msa0428300:intron
TAGATGGATTGGAGAGTGGT+CGG 0.491971 3_2:+79124849 None:intergenic
TGATAATCTTGTAGTGTGAA+GGG 0.498122 3_2:+79124892 None:intergenic
CTTATATCTGTCGTGACTGC+GGG 0.498593 3_2:-79124715 Msa0428300:intron
TTTATCAGGCAATTTATCAA+AGG 0.502560 3_2:+79124580 None:intergenic
GCTATTGGAAATTGAACAGA+TGG 0.508445 3_2:+79123564 None:intergenic
CAAAATGGCCTTGCAAGTGC+AGG 0.518248 3_2:-79124918 Msa0428300:CDS
AAATGAAACAGATGTTAGAA+AGG 0.526185 3_2:-79123911 Msa0428300:CDS
TGGATTGGAGAGTGGTCGGA+GGG 0.526512 3_2:+79124853 None:intergenic
CTATGAATTGAGGAAATGAA+TGG 0.528980 3_2:+79124975 None:intergenic
ACTTCCTATTGCAGTTGCCG+TGG 0.541016 3_2:-79123745 Msa0428300:CDS
CCTGATAAATACTTCTGCCC+TGG 0.541318 3_2:-79124566 Msa0428300:intron
AAGTTTCTTATGGACCTCCC+AGG 0.547146 3_2:-79124766 Msa0428300:CDS
CTTCCTATTGCAGTTGCCGT+GGG 0.547663 3_2:-79123744 Msa0428300:CDS
GAGTGGTCGGAGGGTAGGAG+TGG 0.553144 3_2:+79124862 None:intergenic
ATCAGGCAATTTATCAAAGG+GGG 0.560795 3_2:+79124583 None:intergenic
AAGGGAGGCCTGCACTTGCA+AGG 0.564120 3_2:+79124910 None:intergenic
GCAGGTATATTTACAATGAG+AGG 0.564968 3_2:-79124607 Msa0428300:intron
GCTTATATCTGTCGTGACTG+CGG 0.577229 3_2:-79124716 Msa0428300:CDS
AAGAGAATAGTTGTGTGTTG+TGG 0.585949 3_2:+79125002 None:intergenic
CGGAGGGTAGGAGTGGCAGT+AGG 0.598226 3_2:+79124869 None:intergenic
ATGGATTGGAGAGTGGTCGG+AGG 0.602826 3_2:+79124852 None:intergenic
TTTCCTCAATTCATAGCCAG+AGG 0.625750 3_2:-79124968 Msa0428300:CDS
TTGTTTGGAAGCTACACGCA+TGG 0.631363 3_2:+79124739 None:intergenic
TTTGTGGTGCTCCCAAACGA+AGG 0.633347 3_2:-79123969 Msa0428300:CDS
TGCAAGAACTACAACTCCCA+CGG 0.635141 3_2:+79123728 None:intergenic
AGAGTAGATGGATTGGAGAG+TGG 0.641832 3_2:+79124845 None:intergenic
TGAATCCTACGTGGAAAGCG+TGG 0.643104 3_2:+79125064 None:intergenic
GGATGCCACGCTTTCCACGT+AGG 0.659184 3_2:-79125069 Msa0428300:CDS
TATCAGGCAATTTATCAAAG+GGG 0.660862 3_2:+79124582 None:intergenic
TCTGGTGATTGAGTCTGTAA+GGG 0.670133 3_2:+79125030 None:intergenic
GCTACACGCATGGTAAACCT+GGG 0.677062 3_2:+79124749 None:intergenic
TAATCTTGTAGTGTGAAGGG+AGG 0.698956 3_2:+79124895 None:intergenic
ACACGCATGGTAAACCTGGG+AGG 0.732150 3_2:+79124752 None:intergenic
TAATTGGTTTGAATCCTACG+TGG 0.744336 3_2:+79125055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATATATCTTATTATT+TGG - chr3_2:79123903-79123922 Msa0428300:CDS 10.0%
!! GAAATATATATCTTATTATT+TGG - chr3_2:79123903-79123922 Msa0428300:CDS 10.0%
!! GAATTTGATAAATATTCATA+TGG + chr3_2:79124109-79124128 None:intergenic 15.0%
!! AATATTTATCAAATTCTTGT+TGG - chr3_2:79124113-79124132 Msa0428300:intron 15.0%
!! CATATCTATTATCTATATAT+AGG - chr3_2:79124245-79124264 Msa0428300:intron 15.0%
!! TAATATTATACTGATAAGAA+AGG - chr3_2:79124478-79124497 Msa0428300:intron 15.0%
!! ATGTCAAAAACAAAAATAAT+GGG + chr3_2:79124757-79124776 None:intergenic 15.0%
!! TATGTCAAAAACAAAAATAA+TGG + chr3_2:79124758-79124777 None:intergenic 15.0%
!! GAATTTGATAAATATTCATA+TGG + chr3_2:79124109-79124128 None:intergenic 15.0%
!! AATATTTATCAAATTCTTGT+TGG - chr3_2:79124113-79124132 Msa0428300:intron 15.0%
!! CATATCTATTATCTATATAT+AGG - chr3_2:79124245-79124264 Msa0428300:intron 15.0%
!! TAATATTATACTGATAAGAA+AGG - chr3_2:79124478-79124497 Msa0428300:intron 15.0%
!! ATGTCAAAAACAAAAATAAT+GGG + chr3_2:79124757-79124776 None:intergenic 15.0%
!! TATGTCAAAAACAAAAATAA+TGG + chr3_2:79124758-79124777 None:intergenic 15.0%
!! AAAAAGTAATGAAATTACCA+GGG + chr3_2:79124006-79124025 None:intergenic 20.0%
!! TAAAAAGTAATGAAATTACC+AGG + chr3_2:79124007-79124026 None:intergenic 20.0%
!!! TAACAATTTCTATTGACTTA+AGG - chr3_2:79124177-79124196 Msa0428300:intron 20.0%
!! TTATCTATATATAGGATGTA+TGG - chr3_2:79124253-79124272 Msa0428300:intron 20.0%
!!! TTTTTCAACCAAGTTTATTA+AGG - chr3_2:79124446-79124465 Msa0428300:intron 20.0%
!! TTTAAGAAGCAAAAGAAATA+CGG - chr3_2:79124515-79124534 Msa0428300:intron 20.0%
!!! TTCATGTTCTTTTGTTTATT+TGG - chr3_2:79124932-79124951 Msa0428300:CDS 20.0%
!!! CCCACTTTTTTTTTTATAAA+TGG + chr3_2:79123442-79123461 None:intergenic 20.0%
!! AAAAAGTAATGAAATTACCA+GGG + chr3_2:79124006-79124025 None:intergenic 20.0%
!! TAAAAAGTAATGAAATTACC+AGG + chr3_2:79124007-79124026 None:intergenic 20.0%
!!! TAACAATTTCTATTGACTTA+AGG - chr3_2:79124177-79124196 Msa0428300:intron 20.0%
!! TTATCTATATATAGGATGTA+TGG - chr3_2:79124253-79124272 Msa0428300:intron 20.0%
!!! TTTTTCAACCAAGTTTATTA+AGG - chr3_2:79124446-79124465 Msa0428300:intron 20.0%
!! TTTAAGAAGCAAAAGAAATA+CGG - chr3_2:79124515-79124534 Msa0428300:intron 20.0%
!!! TTCATGTTCTTTTGTTTATT+TGG - chr3_2:79124932-79124951 Msa0428300:CDS 20.0%
! AGATCAAAGAGAAATCAAAA+TGG - chr3_2:79123619-79123638 Msa0428300:three_prime_UTR 25.0%
! TAAGAAACTTGTAGTTGATT+AGG + chr3_2:79123776-79123795 None:intergenic 25.0%
! AATCAACTACAAGTTTCTTA+TGG - chr3_2:79123776-79123795 Msa0428300:intron 25.0%
! AAAAGAGAATGATCAAAGAA+AGG + chr3_2:79123869-79123888 None:intergenic 25.0%
!!! TTTGTTGATAATAATGTTGC+AGG - chr3_2:79123927-79123946 Msa0428300:CDS 25.0%
! TTATCAGGCAATTTATCAAA+GGG + chr3_2:79123974-79123993 None:intergenic 25.0%
! TTTATCAGGCAATTTATCAA+AGG + chr3_2:79123975-79123994 None:intergenic 25.0%
! TGATAAATATTCATATGGCA+TGG + chr3_2:79124104-79124123 None:intergenic 25.0%
!!! TCTGCTTTAAGTTCTAAATT+TGG + chr3_2:79124391-79124410 None:intergenic 25.0%
! ACTTTAGACCTTAATAAACT+TGG + chr3_2:79124457-79124476 None:intergenic 25.0%
! ACTGATAAGAAAGGAAAAAT+AGG - chr3_2:79124487-79124506 Msa0428300:intron 25.0%
! TTAAGAAGCAAAAGAAATAC+GGG - chr3_2:79124516-79124535 Msa0428300:intron 25.0%
! AAATGAAACAGATGTTAGAA+AGG - chr3_2:79124641-79124660 Msa0428300:intron 25.0%
!!! CAAAAACAAAAATAATGGGT+AGG + chr3_2:79124753-79124772 None:intergenic 25.0%
! TTTATTATGCTAATGTCAAC+AGG - chr3_2:79124779-79124798 Msa0428300:CDS 25.0%
! AAAGAACATGAATGCATTAA+AGG + chr3_2:79124924-79124943 None:intergenic 25.0%
! AGATCAAAGAGAAATCAAAA+TGG - chr3_2:79123619-79123638 Msa0428300:three_prime_UTR 25.0%
! TAAGAAACTTGTAGTTGATT+AGG + chr3_2:79123776-79123795 None:intergenic 25.0%
! AATCAACTACAAGTTTCTTA+TGG - chr3_2:79123776-79123795 Msa0428300:intron 25.0%
! AAAAGAGAATGATCAAAGAA+AGG + chr3_2:79123869-79123888 None:intergenic 25.0%
!!! TTTGTTGATAATAATGTTGC+AGG - chr3_2:79123927-79123946 Msa0428300:CDS 25.0%
! TTATCAGGCAATTTATCAAA+GGG + chr3_2:79123974-79123993 None:intergenic 25.0%
! TTTATCAGGCAATTTATCAA+AGG + chr3_2:79123975-79123994 None:intergenic 25.0%
! TGATAAATATTCATATGGCA+TGG + chr3_2:79124104-79124123 None:intergenic 25.0%
!!! TCTGCTTTAAGTTCTAAATT+TGG + chr3_2:79124391-79124410 None:intergenic 25.0%
! ACTTTAGACCTTAATAAACT+TGG + chr3_2:79124457-79124476 None:intergenic 25.0%
! ACTGATAAGAAAGGAAAAAT+AGG - chr3_2:79124487-79124506 Msa0428300:intron 25.0%
! TTAAGAAGCAAAAGAAATAC+GGG - chr3_2:79124516-79124535 Msa0428300:intron 25.0%
! AAATGAAACAGATGTTAGAA+AGG - chr3_2:79124641-79124660 Msa0428300:intron 25.0%
!!! CAAAAACAAAAATAATGGGT+AGG + chr3_2:79124753-79124772 None:intergenic 25.0%
! TTTATTATGCTAATGTCAAC+AGG - chr3_2:79124779-79124798 Msa0428300:CDS 25.0%
! AAAGAACATGAATGCATTAA+AGG + chr3_2:79124924-79124943 None:intergenic 25.0%
CTATGAATTGAGGAAATGAA+TGG + chr3_2:79123580-79123599 None:intergenic 30.0%
TGATAATCTTGTAGTGTGAA+GGG + chr3_2:79123663-79123682 None:intergenic 30.0%
AGGATGAAGTAAAAGGTTAA+GGG + chr3_2:79123756-79123775 None:intergenic 30.0%
TAGGATGAAGTAAAAGGTTA+AGG + chr3_2:79123757-79123776 None:intergenic 30.0%
GTTGATTAGGATGAAGTAAA+AGG + chr3_2:79123763-79123782 None:intergenic 30.0%
TATCAGGCAATTTATCAAAG+GGG + chr3_2:79123973-79123992 None:intergenic 30.0%
AAGTACAGAGAAAGAAAATC+AGG - chr3_2:79124222-79124241 Msa0428300:intron 30.0%
! TCTAAAATGTGTTGCCTATA+TGG + chr3_2:79124345-79124364 None:intergenic 30.0%
!! GCTTTAAGTTCTAAATTTGG+TGG + chr3_2:79124388-79124407 None:intergenic 30.0%
GCATTATGATTGTCTCAAAA+TGG - chr3_2:79124550-79124569 Msa0428300:intron 30.0%
AGGCAAAAAGAAAATGACTA+TGG + chr3_2:79124713-79124732 None:intergenic 30.0%
ATTGAACAGATGGAACTAAA+AGG + chr3_2:79124981-79125000 None:intergenic 30.0%
TGAACAAAAGGCTTAAAGTA+TGG - chr3_2:79125107-79125126 Msa0428300:five_prime_UTR 30.0%
CTATGAATTGAGGAAATGAA+TGG + chr3_2:79123580-79123599 None:intergenic 30.0%
TGATAATCTTGTAGTGTGAA+GGG + chr3_2:79123663-79123682 None:intergenic 30.0%
AGGATGAAGTAAAAGGTTAA+GGG + chr3_2:79123756-79123775 None:intergenic 30.0%
TAGGATGAAGTAAAAGGTTA+AGG + chr3_2:79123757-79123776 None:intergenic 30.0%
GTTGATTAGGATGAAGTAAA+AGG + chr3_2:79123763-79123782 None:intergenic 30.0%
TATCAGGCAATTTATCAAAG+GGG + chr3_2:79123973-79123992 None:intergenic 30.0%
AAGTACAGAGAAAGAAAATC+AGG - chr3_2:79124222-79124241 Msa0428300:intron 30.0%
! TCTAAAATGTGTTGCCTATA+TGG + chr3_2:79124345-79124364 None:intergenic 30.0%
!! GCTTTAAGTTCTAAATTTGG+TGG + chr3_2:79124388-79124407 None:intergenic 30.0%
GCATTATGATTGTCTCAAAA+TGG - chr3_2:79124550-79124569 Msa0428300:intron 30.0%
AGGCAAAAAGAAAATGACTA+TGG + chr3_2:79124713-79124732 None:intergenic 30.0%
ATTGAACAGATGGAACTAAA+AGG + chr3_2:79124981-79125000 None:intergenic 30.0%
TGAACAAAAGGCTTAAAGTA+TGG - chr3_2:79125107-79125126 Msa0428300:five_prime_UTR 30.0%
AAAAGTGGGAAAAAGTTGTG+TGG - chr3_2:79123453-79123472 Msa0428300:three_prime_UTR 35.0%
AAAGTGGGAAAAAGTTGTGT+GGG - chr3_2:79123454-79123473 Msa0428300:three_prime_UTR 35.0%
!! TAATTGGTTTGAATCCTACG+TGG + chr3_2:79123500-79123519 None:intergenic 35.0%
AAGAGAATAGTTGTGTGTTG+TGG + chr3_2:79123553-79123572 None:intergenic 35.0%
GTGATAATCTTGTAGTGTGA+AGG + chr3_2:79123664-79123683 None:intergenic 35.0%
AAAGATGTCTTGAGAGTAGA+TGG + chr3_2:79123722-79123741 None:intergenic 35.0%
! ACGACAGATATAAGCTTGTT+TGG + chr3_2:79123831-79123850 None:intergenic 35.0%
GCAGGTATATTTACAATGAG+AGG - chr3_2:79123945-79123964 Msa0428300:CDS 35.0%
ATCAGGCAATTTATCAAAGG+GGG + chr3_2:79123972-79123991 None:intergenic 35.0%
TGTCCACTATTACTCATAGA+TGG - chr3_2:79124036-79124055 Msa0428300:intron 35.0%
GTTAGGTTCAGTGAATTTGA+CGG - chr3_2:79124289-79124308 Msa0428300:intron 35.0%
AAAATGTGTTGCCTATATGG+CGG + chr3_2:79124342-79124361 None:intergenic 35.0%
TTGTTGACATCTGTTGCATA+GGG + chr3_2:79124615-79124634 None:intergenic 35.0%
TTTGTTGACATCTGTTGCAT+AGG + chr3_2:79124616-79124635 None:intergenic 35.0%
TCCAAAGAGATGAAGCAATT+GGG - chr3_2:79124679-79124698 Msa0428300:intron 35.0%
AGGAGTGAACATATTAAGCA+AGG + chr3_2:79124733-79124752 None:intergenic 35.0%
GCTATTGGAAATTGAACAGA+TGG + chr3_2:79124991-79125010 None:intergenic 35.0%
AACATTCTTGTGCAAGCTAT+TGG + chr3_2:79125006-79125025 None:intergenic 35.0%
! TAAGCCTTTTGTTCAGTCAT+AGG + chr3_2:79125102-79125121 None:intergenic 35.0%
AAAAGTGGGAAAAAGTTGTG+TGG - chr3_2:79123453-79123472 Msa0428300:three_prime_UTR 35.0%
AAAGTGGGAAAAAGTTGTGT+GGG - chr3_2:79123454-79123473 Msa0428300:three_prime_UTR 35.0%
!! TAATTGGTTTGAATCCTACG+TGG + chr3_2:79123500-79123519 None:intergenic 35.0%
AAGAGAATAGTTGTGTGTTG+TGG + chr3_2:79123553-79123572 None:intergenic 35.0%
GTGATAATCTTGTAGTGTGA+AGG + chr3_2:79123664-79123683 None:intergenic 35.0%
AAAGATGTCTTGAGAGTAGA+TGG + chr3_2:79123722-79123741 None:intergenic 35.0%
! ACGACAGATATAAGCTTGTT+TGG + chr3_2:79123831-79123850 None:intergenic 35.0%
GCAGGTATATTTACAATGAG+AGG - chr3_2:79123945-79123964 Msa0428300:CDS 35.0%
ATCAGGCAATTTATCAAAGG+GGG + chr3_2:79123972-79123991 None:intergenic 35.0%
TGTCCACTATTACTCATAGA+TGG - chr3_2:79124036-79124055 Msa0428300:intron 35.0%
GTTAGGTTCAGTGAATTTGA+CGG - chr3_2:79124289-79124308 Msa0428300:intron 35.0%
AAAATGTGTTGCCTATATGG+CGG + chr3_2:79124342-79124361 None:intergenic 35.0%
TTGTTGACATCTGTTGCATA+GGG + chr3_2:79124615-79124634 None:intergenic 35.0%
TTTGTTGACATCTGTTGCAT+AGG + chr3_2:79124616-79124635 None:intergenic 35.0%
TCCAAAGAGATGAAGCAATT+GGG - chr3_2:79124679-79124698 Msa0428300:intron 35.0%
AGGAGTGAACATATTAAGCA+AGG + chr3_2:79124733-79124752 None:intergenic 35.0%
GCTATTGGAAATTGAACAGA+TGG + chr3_2:79124991-79125010 None:intergenic 35.0%
AACATTCTTGTGCAAGCTAT+TGG + chr3_2:79125006-79125025 None:intergenic 35.0%
! TAAGCCTTTTGTTCAGTCAT+AGG + chr3_2:79125102-79125121 None:intergenic 35.0%
AAGTGGGAAAAAGTTGTGTG+GGG - chr3_2:79123455-79123474 Msa0428300:three_prime_UTR 40.0%
AAAAAGTTGTGTGGGGAGTA+TGG - chr3_2:79123462-79123481 Msa0428300:three_prime_UTR 40.0%
! TGAGTCTGTAAGGGTGTAAT+TGG + chr3_2:79123516-79123535 None:intergenic 40.0%
TCTGGTGATTGAGTCTGTAA+GGG + chr3_2:79123525-79123544 None:intergenic 40.0%
TTCTGGTGATTGAGTCTGTA+AGG + chr3_2:79123526-79123545 None:intergenic 40.0%
TTGTGTGTTGTGGAAAGTTC+TGG + chr3_2:79123543-79123562 None:intergenic 40.0%
TTTCCTCAATTCATAGCCAG+AGG - chr3_2:79123584-79123603 Msa0428300:three_prime_UTR 40.0%
ATCTTCGAAGATTCTTCCTC+TGG + chr3_2:79123603-79123622 None:intergenic 40.0%
TAATCTTGTAGTGTGAAGGG+AGG + chr3_2:79123660-79123679 None:intergenic 40.0%
TGTCTTGAGAGTAGATGGAT+TGG + chr3_2:79123717-79123736 None:intergenic 40.0%
CCTCCATCTATGAGTAATAG+TGG + chr3_2:79124042-79124061 None:intergenic 40.0%
CCACTATTACTCATAGATGG+AGG - chr3_2:79124039-79124058 Msa0428300:intron 40.0%
ATGGCTTCTAAGTGCATGTT+AGG - chr3_2:79124272-79124291 Msa0428300:intron 40.0%
CGGTGAATTTGACAGAATCA+CGG - chr3_2:79124309-79124328 Msa0428300:intron 40.0%
TGAATTTGACAGAATCACGG+TGG - chr3_2:79124312-79124331 Msa0428300:intron 40.0%
! AAATGGCGTTTTGCAGTTTG+TGG - chr3_2:79124567-79124586 Msa0428300:CDS 40.0%
TAGGGCTTAAACCTTCGTTT+GGG + chr3_2:79124597-79124616 None:intergenic 40.0%
ATAGGGCTTAAACCTTCGTT+TGG + chr3_2:79124598-79124617 None:intergenic 40.0%
CTCCAAAGAGATGAAGCAAT+TGG - chr3_2:79124678-79124697 Msa0428300:intron 40.0%
ACCCAATTGCTTCATCTCTT+TGG + chr3_2:79124683-79124702 None:intergenic 40.0%
AAGTGGGAAAAAGTTGTGTG+GGG - chr3_2:79123455-79123474 Msa0428300:three_prime_UTR 40.0%
AAAAAGTTGTGTGGGGAGTA+TGG - chr3_2:79123462-79123481 Msa0428300:three_prime_UTR 40.0%
! TGAGTCTGTAAGGGTGTAAT+TGG + chr3_2:79123516-79123535 None:intergenic 40.0%
TCTGGTGATTGAGTCTGTAA+GGG + chr3_2:79123525-79123544 None:intergenic 40.0%
TTCTGGTGATTGAGTCTGTA+AGG + chr3_2:79123526-79123545 None:intergenic 40.0%
TTGTGTGTTGTGGAAAGTTC+TGG + chr3_2:79123543-79123562 None:intergenic 40.0%
TTTCCTCAATTCATAGCCAG+AGG - chr3_2:79123584-79123603 Msa0428300:three_prime_UTR 40.0%
ATCTTCGAAGATTCTTCCTC+TGG + chr3_2:79123603-79123622 None:intergenic 40.0%
TAATCTTGTAGTGTGAAGGG+AGG + chr3_2:79123660-79123679 None:intergenic 40.0%
TGTCTTGAGAGTAGATGGAT+TGG + chr3_2:79123717-79123736 None:intergenic 40.0%
CCTCCATCTATGAGTAATAG+TGG + chr3_2:79124042-79124061 None:intergenic 40.0%
CCACTATTACTCATAGATGG+AGG - chr3_2:79124039-79124058 Msa0428300:intron 40.0%
ATGGCTTCTAAGTGCATGTT+AGG - chr3_2:79124272-79124291 Msa0428300:intron 40.0%
CGGTGAATTTGACAGAATCA+CGG - chr3_2:79124309-79124328 Msa0428300:intron 40.0%
TGAATTTGACAGAATCACGG+TGG - chr3_2:79124312-79124331 Msa0428300:intron 40.0%
! AAATGGCGTTTTGCAGTTTG+TGG - chr3_2:79124567-79124586 Msa0428300:CDS 40.0%
TAGGGCTTAAACCTTCGTTT+GGG + chr3_2:79124597-79124616 None:intergenic 40.0%
ATAGGGCTTAAACCTTCGTT+TGG + chr3_2:79124598-79124617 None:intergenic 40.0%
CTCCAAAGAGATGAAGCAAT+TGG - chr3_2:79124678-79124697 Msa0428300:intron 40.0%
ACCCAATTGCTTCATCTCTT+TGG + chr3_2:79124683-79124702 None:intergenic 40.0%
CTTCCTCTGGCTATGAATTG+AGG + chr3_2:79123590-79123609 None:intergenic 45.0%
!! TAGATGGATTGGAGAGTGGT+CGG + chr3_2:79123706-79123725 None:intergenic 45.0%
!! AGAGTAGATGGATTGGAGAG+TGG + chr3_2:79123710-79123729 None:intergenic 45.0%
AAGTTTCTTATGGACCTCCC+AGG - chr3_2:79123786-79123805 Msa0428300:intron 45.0%
TTGTTTGGAAGCTACACGCA+TGG + chr3_2:79123816-79123835 None:intergenic 45.0%
GCTTATATCTGTCGTGACTG+CGG - chr3_2:79123836-79123855 Msa0428300:intron 45.0%
CTTATATCTGTCGTGACTGC+GGG - chr3_2:79123837-79123856 Msa0428300:intron 45.0%
!! CCAGGGCAGAAGTATTTATC+AGG + chr3_2:79123989-79124008 None:intergenic 45.0%
CCTGATAAATACTTCTGCCC+TGG - chr3_2:79123986-79124005 Msa0428300:intron 45.0%
ATGAGACCAGTCTTTGTGAG+TGG + chr3_2:79124423-79124442 None:intergenic 45.0%
TGCAAGAACTACAACTCCCA+CGG + chr3_2:79124827-79124846 None:intergenic 45.0%
GCCACCTATGACTGAACAAA+AGG - chr3_2:79125095-79125114 Msa0428300:five_prime_UTR 45.0%
! GCCTTTTGTTCAGTCATAGG+TGG + chr3_2:79125099-79125118 None:intergenic 45.0%
CTTCCTCTGGCTATGAATTG+AGG + chr3_2:79123590-79123609 None:intergenic 45.0%
!! TAGATGGATTGGAGAGTGGT+CGG + chr3_2:79123706-79123725 None:intergenic 45.0%
!! AGAGTAGATGGATTGGAGAG+TGG + chr3_2:79123710-79123729 None:intergenic 45.0%
AAGTTTCTTATGGACCTCCC+AGG - chr3_2:79123786-79123805 Msa0428300:intron 45.0%
TTGTTTGGAAGCTACACGCA+TGG + chr3_2:79123816-79123835 None:intergenic 45.0%
GCTTATATCTGTCGTGACTG+CGG - chr3_2:79123836-79123855 Msa0428300:intron 45.0%
CTTATATCTGTCGTGACTGC+GGG - chr3_2:79123837-79123856 Msa0428300:intron 45.0%
!! CCAGGGCAGAAGTATTTATC+AGG + chr3_2:79123989-79124008 None:intergenic 45.0%
CCTGATAAATACTTCTGCCC+TGG - chr3_2:79123986-79124005 Msa0428300:intron 45.0%
ATGAGACCAGTCTTTGTGAG+TGG + chr3_2:79124423-79124442 None:intergenic 45.0%
TGCAAGAACTACAACTCCCA+CGG + chr3_2:79124827-79124846 None:intergenic 45.0%
GCCACCTATGACTGAACAAA+AGG - chr3_2:79125095-79125114 Msa0428300:five_prime_UTR 45.0%
! GCCTTTTGTTCAGTCATAGG+TGG + chr3_2:79125099-79125118 None:intergenic 45.0%
TGAATCCTACGTGGAAAGCG+TGG + chr3_2:79123491-79123510 None:intergenic 50.0%
! CAAAATGGCCTTGCAAGTGC+AGG - chr3_2:79123634-79123653 Msa0428300:three_prime_UTR 50.0%
GCTACACGCATGGTAAACCT+GGG + chr3_2:79123806-79123825 None:intergenic 50.0%
AGCTACACGCATGGTAAACC+TGG + chr3_2:79123807-79123826 None:intergenic 50.0%
!! ACGGTGGATTACCGCCATAT+AGG - chr3_2:79124328-79124347 Msa0428300:intron 50.0%
TCACTGCCACTCACAAAGAC+TGG - chr3_2:79124414-79124433 Msa0428300:intron 50.0%
TTTGTGGTGCTCCCAAACGA+AGG - chr3_2:79124583-79124602 Msa0428300:CDS 50.0%
ACTTCCTATTGCAGTTGCCG+TGG - chr3_2:79124807-79124826 Msa0428300:CDS 50.0%
CTTCCTATTGCAGTTGCCGT+GGG - chr3_2:79124808-79124827 Msa0428300:CDS 50.0%
GTGGGAGTTGTAGTTCTTGC+AGG - chr3_2:79124826-79124845 Msa0428300:CDS 50.0%
GTTCAGTCATAGGTGGCAAC+TGG + chr3_2:79125092-79125111 None:intergenic 50.0%
TGAATCCTACGTGGAAAGCG+TGG + chr3_2:79123491-79123510 None:intergenic 50.0%
! CAAAATGGCCTTGCAAGTGC+AGG - chr3_2:79123634-79123653 Msa0428300:three_prime_UTR 50.0%
GCTACACGCATGGTAAACCT+GGG + chr3_2:79123806-79123825 None:intergenic 50.0%
AGCTACACGCATGGTAAACC+TGG + chr3_2:79123807-79123826 None:intergenic 50.0%
!! ACGGTGGATTACCGCCATAT+AGG - chr3_2:79124328-79124347 Msa0428300:intron 50.0%
TCACTGCCACTCACAAAGAC+TGG - chr3_2:79124414-79124433 Msa0428300:intron 50.0%
TTTGTGGTGCTCCCAAACGA+AGG - chr3_2:79124583-79124602 Msa0428300:CDS 50.0%
ACTTCCTATTGCAGTTGCCG+TGG - chr3_2:79124807-79124826 Msa0428300:CDS 50.0%
CTTCCTATTGCAGTTGCCGT+GGG - chr3_2:79124808-79124827 Msa0428300:CDS 50.0%
GTGGGAGTTGTAGTTCTTGC+AGG - chr3_2:79124826-79124845 Msa0428300:CDS 50.0%
GTTCAGTCATAGGTGGCAAC+TGG + chr3_2:79125092-79125111 None:intergenic 50.0%
! TGGATTGGAGAGTGGTCGGA+GGG + chr3_2:79123702-79123721 None:intergenic 55.0%
!! ATGGATTGGAGAGTGGTCGG+AGG + chr3_2:79123703-79123722 None:intergenic 55.0%
ACACGCATGGTAAACCTGGG+AGG + chr3_2:79123803-79123822 None:intergenic 55.0%
ACTCCCACGGCAACTGCAAT+AGG + chr3_2:79124814-79124833 None:intergenic 55.0%
! TGGATTGGAGAGTGGTCGGA+GGG + chr3_2:79123702-79123721 None:intergenic 55.0%
!! ATGGATTGGAGAGTGGTCGG+AGG + chr3_2:79123703-79123722 None:intergenic 55.0%
ACACGCATGGTAAACCTGGG+AGG + chr3_2:79123803-79123822 None:intergenic 55.0%
ACTCCCACGGCAACTGCAAT+AGG + chr3_2:79124814-79124833 None:intergenic 55.0%
GGATGCCACGCTTTCCACGT+AGG - chr3_2:79123483-79123502 Msa0428300:three_prime_UTR 60.0%
AAGGGAGGCCTGCACTTGCA+AGG + chr3_2:79123645-79123664 None:intergenic 60.0%
TTGGAGAGTGGTCGGAGGGT+AGG + chr3_2:79123698-79123717 None:intergenic 60.0%
GGATGCCACGCTTTCCACGT+AGG - chr3_2:79123483-79123502 Msa0428300:three_prime_UTR 60.0%
AAGGGAGGCCTGCACTTGCA+AGG + chr3_2:79123645-79123664 None:intergenic 60.0%
TTGGAGAGTGGTCGGAGGGT+AGG + chr3_2:79123698-79123717 None:intergenic 60.0%
CGGAGGGTAGGAGTGGCAGT+AGG + chr3_2:79123686-79123705 None:intergenic 65.0%
GAGTGGTCGGAGGGTAGGAG+TGG + chr3_2:79123693-79123712 None:intergenic 65.0%
CGGAGGGTAGGAGTGGCAGT+AGG + chr3_2:79123686-79123705 None:intergenic 65.0%
GAGTGGTCGGAGGGTAGGAG+TGG + chr3_2:79123693-79123712 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79123440 79125134 79123440 ID=Msa0428300;Name=Msa0428300
chr3_2 mRNA 79123440 79125134 79123440 ID=Msa0428300-mRNA-1;Parent=Msa0428300;Name=Msa0428300-mRNA-1;_AED=0.16;_eAED=0.16;_QI=45|1|1|1|1|1|4|255|209
chr3_2 exon 79123440 79123773 79123440 ID=Msa0428300-mRNA-1:exon:21271;Parent=Msa0428300-mRNA-1
chr3_2 exon 79123874 79123991 79123874 ID=Msa0428300-mRNA-1:exon:21270;Parent=Msa0428300-mRNA-1
chr3_2 exon 79124567 79124625 79124567 ID=Msa0428300-mRNA-1:exon:21269;Parent=Msa0428300-mRNA-1
chr3_2 exon 79124716 79125134 79124716 ID=Msa0428300-mRNA-1:exon:21268;Parent=Msa0428300-mRNA-1
chr3_2 five_prime_UTR 79125090 79125134 79125090 ID=Msa0428300-mRNA-1:five_prime_utr;Parent=Msa0428300-mRNA-1
chr3_2 CDS 79124716 79125089 79124716 ID=Msa0428300-mRNA-1:cds;Parent=Msa0428300-mRNA-1
chr3_2 CDS 79124567 79124625 79124567 ID=Msa0428300-mRNA-1:cds;Parent=Msa0428300-mRNA-1
chr3_2 CDS 79123874 79123991 79123874 ID=Msa0428300-mRNA-1:cds;Parent=Msa0428300-mRNA-1
chr3_2 CDS 79123695 79123773 79123695 ID=Msa0428300-mRNA-1:cds;Parent=Msa0428300-mRNA-1
chr3_2 three_prime_UTR 79123440 79123694 79123440 ID=Msa0428300-mRNA-1:three_prime_utr;Parent=Msa0428300-mRNA-1
Gene Sequence

>Msa0428300

ATGCCACGCTTTCCACGTAGGATTCAAACCAATTACACCCTTACAGACTCAATCACCAGAACTTTCCACAACACACAACTATTCTCTTATCTCCATTCATTTCCTCAATTCATAGCCAGAGGAAGAATCTTCGAAGATCAAAGAGAAATCAAAATGGCCTTGCAAGTGCAGGCCTCCCTTCACACTACAAGATTATCACCTACTGCCACTCCTACCCTCCGACCACTCTCCAATCCATCTACTCTCAAGACATCTTTCTTCTCTCGTTCCCTTAACCTTTTACTTCATCCTAATCAACTACAAGTTTCTTATGGACCTCCCAGGTTTACCATGCGTGTAGCTTCCAAACAAGCTTATATCTGTCGTGACTGCGGGTATATTTACAATGAGAGGACCCCCTTTGATAAATTGCCTGATAAATACTTCTGCCCTGTTTGTGGTGCTCCCAAACGAAGGTTTAAGCCCTATGCAACAGATGTCAACAAAAAAGCAAATGAAACAGATGTTAGAAAGGCAAGAAAAGCTGAACTCCAAAGAGATGAAGCAATTGGGAAAGCACTTCCTATTGCAGTTGCCGTGGGAGTTGTAGTTCTTGCAGGATTATACTTCTATCTCAACAACACATTTTAG

Protein sequence

>Msa0428300

MPRFPRRIQTNYTLTDSITRTFHNTQLFSYLHSFPQFIARGRIFEDQREIKMALQVQASLHTTRLSPTATPTLRPLSNPSTLKTSFFSRSLNLLLHPNQLQVSYGPPRFTMRVASKQAYICRDCGYIYNERTPFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETDVRKARKAELQRDEAIGKALPIAVAVGVVVLAGLYFYLNNTF*