AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015220 MtrunA17_Chr5g0418001 95.041 121 5 1 1 121 1 120 6.44e-79 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015220 AT5G43750.1 46.364 110 57 1 12 121 13 120 1.89e-27 100

Find 34 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAATTTCAGGAACATTT+TGG 0.124367 1_1:-24593287 Msa0015220:intron
AGGACCTCCCACTGGATTTC+AGG 0.132666 1_1:-24593235 Msa0015220:CDS
CTTCACCTTCATTGAAAGTA+TGG 0.219255 1_1:+24593920 None:intergenic
GAACTCATTGAACCATAAAT+TGG 0.252776 1_1:+24593122 None:intergenic
CAGGTAAAACCTCCAATTTA+TGG 0.277818 1_1:-24593134 Msa0015220:three_prime_UTR
CCAACACCACTCAACTTTCA+TGG 0.285818 1_1:-24594196 Msa0015220:CDS
GTTGATCAATTTCGCACTAA+TGG 0.321541 1_1:-24594082 Msa0015220:CDS
GATCAACAGGATCTTCATTA+AGG 0.330766 1_1:+24594098 None:intergenic
TTTGAGTATGGAATATTTGA+TGG 0.360719 1_1:-24593946 Msa0015220:CDS
ACAAAATTCTTGTTGAATGC+TGG 0.374097 1_1:-24594142 Msa0015220:CDS
TTATAGGAAGAATTTGAGTA+TGG 0.374124 1_1:-24593958 Msa0015220:intron
TTAGTGCGAAATTGATCAAC+AGG 0.443402 1_1:+24594085 None:intergenic
GAGTGGTGTTGGAGAAGAGA+AGG 0.443858 1_1:+24594207 None:intergenic
GGACCTCCCACTGGATTTCA+GGG 0.457623 1_1:-24593234 Msa0015220:CDS
AGTTTGGATGGAGTGATGAT+AGG 0.472201 1_1:+24594241 None:intergenic
CTCATTGAACCATAAATTGG+AGG 0.492777 1_1:+24593125 None:intergenic
TTGGATGGAGTGATGATAGG+AGG 0.525418 1_1:+24594244 None:intergenic
CCATGAAAGTTGAGTGGTGT+TGG 0.531670 1_1:+24594196 None:intergenic
ACAGGATCTTCATTAAGGTC+AGG 0.537475 1_1:+24594103 None:intergenic
GGTCACCATACTTTCAATGA+AGG 0.543716 1_1:-24593925 Msa0015220:CDS
TGGATGGAGTGATGATAGGA+GGG 0.548771 1_1:+24594245 None:intergenic
AATGAAGGTGAAGAAAAGAA+AGG 0.563141 1_1:-24593910 Msa0015220:intron
ATGTGTCAGACTTGGTTGGT+TGG 0.567628 1_1:+24594295 None:intergenic
ATGGATGATGTAATAGCAGT+AGG 0.572923 1_1:-24593255 Msa0015220:CDS
AGGAGGGACAAGTGAGAGTG+AGG 0.582918 1_1:+24594261 None:intergenic
CGCCATGTGTCAGACTTGGT+TGG 0.594565 1_1:+24594291 None:intergenic
ATAGCAGTAGGACCTCCCAC+TGG 0.613341 1_1:-24593243 Msa0015220:CDS
ATAGCGCCATGTGTCAGACT+TGG 0.620326 1_1:+24594287 None:intergenic
ACTAAAGGAATGATTGAACC+AGG 0.625251 1_1:-24593153 Msa0015220:three_prime_UTR
AACAAACCCTGAAATCCAGT+GGG 0.642555 1_1:+24593228 None:intergenic
AAACAAACCCTGAAATCCAG+TGG 0.662651 1_1:+24593227 None:intergenic
AAACCCTGAAATCCAGTGGG+AGG 0.676329 1_1:+24593231 None:intergenic
AACCAACCAAGTCTGACACA+TGG 0.684292 1_1:-24594293 Msa0015220:exon
AATATGCCATGAAAGTTGAG+TGG 0.727294 1_1:+24594190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATATAAATAAA+GGG + chr1_1:24593851-24593870 None:intergenic 0.0%
!! AAAAATTAAAATATAAATAA+AGG + chr1_1:24593852-24593871 None:intergenic 0.0%
!!! TATTTATATTTTAATTTTTA+AGG - chr1_1:24593853-24593872 Msa0015220:intron 0.0%
!! AAAATTAAAATATAAATAAA+GGG + chr1_1:24593851-24593870 None:intergenic 0.0%
!! AAAAATTAAAATATAAATAA+AGG + chr1_1:24593852-24593871 None:intergenic 0.0%
!!! TATTTATATTTTAATTTTTA+AGG - chr1_1:24593853-24593872 Msa0015220:intron 0.0%
!! AATATGAAAAAAAAAAATAC+AGG + chr1_1:24593386-24593405 None:intergenic 10.0%
!!! ATATTTTTATTTTGAAAAAC+TGG - chr1_1:24593657-24593676 Msa0015220:intron 10.0%
!! AATATGAAAAAAAAAAATAC+AGG + chr1_1:24593386-24593405 None:intergenic 10.0%
!!! ATATTTTTATTTTGAAAAAC+TGG - chr1_1:24593657-24593676 Msa0015220:intron 10.0%
!!! ATTTTTAAGGAATTATTACT+AGG - chr1_1:24593866-24593885 Msa0015220:intron 15.0%
!!! ACTAATGTTTTAAAAACTAA+AGG - chr1_1:24594267-24594286 Msa0015220:CDS 15.0%
!!! ATTTTTAAGGAATTATTACT+AGG - chr1_1:24593866-24593885 Msa0015220:intron 15.0%
!!! ACTAATGTTTTAAAAACTAA+AGG - chr1_1:24594267-24594286 Msa0015220:CDS 15.0%
!! ATGAAAAAAAAAAATACAGG+TGG + chr1_1:24593383-24593402 None:intergenic 20.0%
!!! TTTGTTTGTGTTGATTTTAT+AGG - chr1_1:24593461-24593480 Msa0015220:intron 20.0%
!!! TCAATCACTTTGTTTTTTAA+TGG - chr1_1:24593600-24593619 Msa0015220:intron 20.0%
!!! CTTTGTTTTTTAATGGAAAT+TGG - chr1_1:24593607-24593626 Msa0015220:intron 20.0%
!! TTCATAATGTTAGAATGATT+AGG - chr1_1:24593933-24593952 Msa0015220:CDS 20.0%
!! ATGAAAAAAAAAAATACAGG+TGG + chr1_1:24593383-24593402 None:intergenic 20.0%
!!! TTTGTTTGTGTTGATTTTAT+AGG - chr1_1:24593461-24593480 Msa0015220:intron 20.0%
!!! TCAATCACTTTGTTTTTTAA+TGG - chr1_1:24593600-24593619 Msa0015220:intron 20.0%
!!! CTTTGTTTTTTAATGGAAAT+TGG - chr1_1:24593607-24593626 Msa0015220:intron 20.0%
!! TTCATAATGTTAGAATGATT+AGG - chr1_1:24593933-24593952 Msa0015220:CDS 20.0%
! TTATAGGAAGAATTTGAGTA+TGG - chr1_1:24593477-24593496 Msa0015220:intron 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr1_1:24593489-24593508 Msa0015220:intron 25.0%
!!! TTTTGAAAAACTGGAGTATA+AGG - chr1_1:24593666-24593685 Msa0015220:intron 25.0%
!! AATTTTCATTGTATTGTCGA+AGG - chr1_1:24593712-24593731 Msa0015220:intron 25.0%
! ATATAAATAAAGGGGAAACA+GGG + chr1_1:24593842-24593861 None:intergenic 25.0%
! AATATAAATAAAGGGGAAAC+AGG + chr1_1:24593843-24593862 None:intergenic 25.0%
! TTGCAACAGTAAAATTTGAT+GGG - chr1_1:24593899-24593918 Msa0015220:intron 25.0%
! AAAGTTTGAATTTCGATTGA+AGG - chr1_1:24594027-24594046 Msa0015220:intron 25.0%
!! TGTTAATTTCAGGAACATTT+TGG - chr1_1:24594148-24594167 Msa0015220:CDS 25.0%
!! GTTAATTTCAGGAACATTTT+GGG - chr1_1:24594149-24594168 Msa0015220:CDS 25.0%
!! TTAATTTCAGGAACATTTTG+GGG - chr1_1:24594150-24594169 Msa0015220:CDS 25.0%
! TTATAGGAAGAATTTGAGTA+TGG - chr1_1:24593477-24593496 Msa0015220:intron 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr1_1:24593489-24593508 Msa0015220:intron 25.0%
!!! TTTTGAAAAACTGGAGTATA+AGG - chr1_1:24593666-24593685 Msa0015220:intron 25.0%
!! AATTTTCATTGTATTGTCGA+AGG - chr1_1:24593712-24593731 Msa0015220:intron 25.0%
! ATATAAATAAAGGGGAAACA+GGG + chr1_1:24593842-24593861 None:intergenic 25.0%
! AATATAAATAAAGGGGAAAC+AGG + chr1_1:24593843-24593862 None:intergenic 25.0%
! TTGCAACAGTAAAATTTGAT+GGG - chr1_1:24593899-24593918 Msa0015220:intron 25.0%
! AAAGTTTGAATTTCGATTGA+AGG - chr1_1:24594027-24594046 Msa0015220:intron 25.0%
!! TGTTAATTTCAGGAACATTT+TGG - chr1_1:24594148-24594167 Msa0015220:CDS 25.0%
!! GTTAATTTCAGGAACATTTT+GGG - chr1_1:24594149-24594168 Msa0015220:CDS 25.0%
!! TTAATTTCAGGAACATTTTG+GGG - chr1_1:24594150-24594169 Msa0015220:CDS 25.0%
! TGTTGAGTTTTTGTTACTCT+TGG + chr1_1:24593276-24593295 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG - chr1_1:24593293-24593312 Msa0015220:intron 30.0%
AATGAAGGTGAAGAAAAGAA+AGG - chr1_1:24593525-24593544 Msa0015220:intron 30.0%
TATAAATAAAGGGGAAACAG+GGG + chr1_1:24593841-24593860 None:intergenic 30.0%
CTTGCAACAGTAAAATTTGA+TGG - chr1_1:24593898-24593917 Msa0015220:intron 30.0%
AGGAATAAGATTACCTACAA+AGG - chr1_1:24594047-24594066 Msa0015220:intron 30.0%
AATAAGATTACCTACAAAGG+AGG - chr1_1:24594050-24594069 Msa0015220:intron 30.0%
ATAAGATTACCTACAAAGGA+GGG - chr1_1:24594051-24594070 Msa0015220:intron 30.0%
TTTCCTAACAAAGTTCATGA+TGG - chr1_1:24594124-24594143 Msa0015220:CDS 30.0%
!! TCATGATGGATGTTAATTTC+AGG - chr1_1:24594138-24594157 Msa0015220:CDS 30.0%
GAACTCATTGAACCATAAAT+TGG + chr1_1:24594316-24594335 None:intergenic 30.0%
! TGTTGAGTTTTTGTTACTCT+TGG + chr1_1:24593276-24593295 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG - chr1_1:24593293-24593312 Msa0015220:intron 30.0%
AATGAAGGTGAAGAAAAGAA+AGG - chr1_1:24593525-24593544 Msa0015220:intron 30.0%
TATAAATAAAGGGGAAACAG+GGG + chr1_1:24593841-24593860 None:intergenic 30.0%
CTTGCAACAGTAAAATTTGA+TGG - chr1_1:24593898-24593917 Msa0015220:intron 30.0%
AGGAATAAGATTACCTACAA+AGG - chr1_1:24594047-24594066 Msa0015220:intron 30.0%
AATAAGATTACCTACAAAGG+AGG - chr1_1:24594050-24594069 Msa0015220:intron 30.0%
ATAAGATTACCTACAAAGGA+GGG - chr1_1:24594051-24594070 Msa0015220:intron 30.0%
TTTCCTAACAAAGTTCATGA+TGG - chr1_1:24594124-24594143 Msa0015220:CDS 30.0%
!! TCATGATGGATGTTAATTTC+AGG - chr1_1:24594138-24594157 Msa0015220:CDS 30.0%
GAACTCATTGAACCATAAAT+TGG + chr1_1:24594316-24594335 None:intergenic 30.0%
!!! GATTTTGAAGTGAGTTTGGA+TGG + chr1_1:24593209-24593228 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr1_1:24593213-24593232 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG + chr1_1:24593248-24593267 None:intergenic 35.0%
GATCAACAGGATCTTCATTA+AGG + chr1_1:24593340-24593359 None:intergenic 35.0%
TTAGTGCGAAATTGATCAAC+AGG + chr1_1:24593353-24593372 None:intergenic 35.0%
GTTGATCAATTTCGCACTAA+TGG - chr1_1:24593353-24593372 Msa0015220:intron 35.0%
CTTCACCTTCATTGAAAGTA+TGG + chr1_1:24593518-24593537 None:intergenic 35.0%
TAATGGAAATTGGAGCATGT+TGG - chr1_1:24593617-24593636 Msa0015220:intron 35.0%
ACGAGATATTAAGAGAGTGA+TGG - chr1_1:24593811-24593830 Msa0015220:intron 35.0%
AAACAGATACAGACTTAGTC+AGG + chr1_1:24594106-24594125 None:intergenic 35.0%
CATCCATCATGAACTTTGTT+AGG + chr1_1:24594130-24594149 None:intergenic 35.0%
ATGGATGATGTAATAGCAGT+AGG - chr1_1:24594180-24594199 Msa0015220:CDS 35.0%
ACTAAAGGAATGATTGAACC+AGG - chr1_1:24594282-24594301 Msa0015220:exon 35.0%
! CATAAATTGGAGGTTTTACC+TGG + chr1_1:24594303-24594322 None:intergenic 35.0%
CAGGTAAAACCTCCAATTTA+TGG - chr1_1:24594301-24594320 Msa0015220:five_prime_UTR 35.0%
CTCATTGAACCATAAATTGG+AGG + chr1_1:24594313-24594332 None:intergenic 35.0%
!!! GATTTTGAAGTGAGTTTGGA+TGG + chr1_1:24593209-24593228 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr1_1:24593213-24593232 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG + chr1_1:24593248-24593267 None:intergenic 35.0%
GATCAACAGGATCTTCATTA+AGG + chr1_1:24593340-24593359 None:intergenic 35.0%
TTAGTGCGAAATTGATCAAC+AGG + chr1_1:24593353-24593372 None:intergenic 35.0%
GTTGATCAATTTCGCACTAA+TGG - chr1_1:24593353-24593372 Msa0015220:intron 35.0%
CTTCACCTTCATTGAAAGTA+TGG + chr1_1:24593518-24593537 None:intergenic 35.0%
TAATGGAAATTGGAGCATGT+TGG - chr1_1:24593617-24593636 Msa0015220:intron 35.0%
ACGAGATATTAAGAGAGTGA+TGG - chr1_1:24593811-24593830 Msa0015220:intron 35.0%
AAACAGATACAGACTTAGTC+AGG + chr1_1:24594106-24594125 None:intergenic 35.0%
CATCCATCATGAACTTTGTT+AGG + chr1_1:24594130-24594149 None:intergenic 35.0%
ATGGATGATGTAATAGCAGT+AGG - chr1_1:24594180-24594199 Msa0015220:CDS 35.0%
ACTAAAGGAATGATTGAACC+AGG - chr1_1:24594282-24594301 Msa0015220:exon 35.0%
! CATAAATTGGAGGTTTTACC+TGG + chr1_1:24594303-24594322 None:intergenic 35.0%
CAGGTAAAACCTCCAATTTA+TGG - chr1_1:24594301-24594320 Msa0015220:five_prime_UTR 35.0%
CTCATTGAACCATAAATTGG+AGG + chr1_1:24594313-24594332 None:intergenic 35.0%
AGTTTGGATGGAGTGATGAT+AGG + chr1_1:24593197-24593216 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG + chr1_1:24593335-24593354 None:intergenic 40.0%
GGTCACCATACTTTCAATGA+AGG - chr1_1:24593510-24593529 Msa0015220:intron 40.0%
GCAATGGCAAGAGTTTGAAA+TGG + chr1_1:24593762-24593781 None:intergenic 40.0%
ATCTCGTTTGTTTGTCCATG+AGG + chr1_1:24593798-24593817 None:intergenic 40.0%
AGAAAAATGCACCTACCAAC+AGG - chr1_1:24593959-24593978 Msa0015220:intron 40.0%
GAAAAATGCACCTACCAACA+GGG - chr1_1:24593960-24593979 Msa0015220:intron 40.0%
TCATAGATTCCCTCCTTTGT+AGG + chr1_1:24594063-24594082 None:intergenic 40.0%
TACAAAGGAGGGAATCTATG+AGG - chr1_1:24594062-24594081 Msa0015220:intron 40.0%
TACAGACTTAGTCAGGAATC+AGG + chr1_1:24594099-24594118 None:intergenic 40.0%
!!! AACATTTTGGGGTGCGATTA+TGG - chr1_1:24594161-24594180 Msa0015220:CDS 40.0%
AACAAACCCTGAAATCCAGT+GGG + chr1_1:24594210-24594229 None:intergenic 40.0%
AAACAAACCCTGAAATCCAG+TGG + chr1_1:24594211-24594230 None:intergenic 40.0%
AGTTTGGATGGAGTGATGAT+AGG + chr1_1:24593197-24593216 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG + chr1_1:24593335-24593354 None:intergenic 40.0%
GGTCACCATACTTTCAATGA+AGG - chr1_1:24593510-24593529 Msa0015220:intron 40.0%
GCAATGGCAAGAGTTTGAAA+TGG + chr1_1:24593762-24593781 None:intergenic 40.0%
ATCTCGTTTGTTTGTCCATG+AGG + chr1_1:24593798-24593817 None:intergenic 40.0%
AGAAAAATGCACCTACCAAC+AGG - chr1_1:24593959-24593978 Msa0015220:intron 40.0%
GAAAAATGCACCTACCAACA+GGG - chr1_1:24593960-24593979 Msa0015220:intron 40.0%
TCATAGATTCCCTCCTTTGT+AGG + chr1_1:24594063-24594082 None:intergenic 40.0%
TACAAAGGAGGGAATCTATG+AGG - chr1_1:24594062-24594081 Msa0015220:intron 40.0%
TACAGACTTAGTCAGGAATC+AGG + chr1_1:24594099-24594118 None:intergenic 40.0%
!!! AACATTTTGGGGTGCGATTA+TGG - chr1_1:24594161-24594180 Msa0015220:CDS 40.0%
AACAAACCCTGAAATCCAGT+GGG + chr1_1:24594210-24594229 None:intergenic 40.0%
AAACAAACCCTGAAATCCAG+TGG + chr1_1:24594211-24594230 None:intergenic 40.0%
! ATGTGTCAGACTTGGTTGGT+TGG + chr1_1:24593143-24593162 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr1_1:24593142-24593161 Msa0015220:three_prime_UTR 45.0%
TGGATGGAGTGATGATAGGA+GGG + chr1_1:24593193-24593212 None:intergenic 45.0%
TTGGATGGAGTGATGATAGG+AGG + chr1_1:24593194-24593213 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG + chr1_1:24593242-24593261 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG - chr1_1:24593239-24593258 Msa0015220:CDS 45.0%
TTGGAGCATGTTGGTACTCA+TGG - chr1_1:24593626-24593645 Msa0015220:intron 45.0%
AGGTGTGACAACAATGGCAA+TGG + chr1_1:24593778-24593797 None:intergenic 45.0%
TCCATGAGGTGTGACAACAA+TGG + chr1_1:24593784-24593803 None:intergenic 45.0%
TTCGATTCAACCCTGTTGGT+AGG + chr1_1:24593973-24593992 None:intergenic 45.0%
TTCGTTCGATTCAACCCTGT+TGG + chr1_1:24593977-24593996 None:intergenic 45.0%
ACAGGGTTGAATCGAACGAA+AGG - chr1_1:24593977-24593996 Msa0015220:intron 45.0%
CAGGGTTGAATCGAACGAAA+GGG - chr1_1:24593978-24593997 Msa0015220:intron 45.0%
AGGGTTGAATCGAACGAAAG+GGG - chr1_1:24593979-24593998 Msa0015220:intron 45.0%
! ATGTGTCAGACTTGGTTGGT+TGG + chr1_1:24593143-24593162 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr1_1:24593142-24593161 Msa0015220:three_prime_UTR 45.0%
TGGATGGAGTGATGATAGGA+GGG + chr1_1:24593193-24593212 None:intergenic 45.0%
TTGGATGGAGTGATGATAGG+AGG + chr1_1:24593194-24593213 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG + chr1_1:24593242-24593261 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG - chr1_1:24593239-24593258 Msa0015220:CDS 45.0%
TTGGAGCATGTTGGTACTCA+TGG - chr1_1:24593626-24593645 Msa0015220:intron 45.0%
AGGTGTGACAACAATGGCAA+TGG + chr1_1:24593778-24593797 None:intergenic 45.0%
TCCATGAGGTGTGACAACAA+TGG + chr1_1:24593784-24593803 None:intergenic 45.0%
TTCGATTCAACCCTGTTGGT+AGG + chr1_1:24593973-24593992 None:intergenic 45.0%
TTCGTTCGATTCAACCCTGT+TGG + chr1_1:24593977-24593996 None:intergenic 45.0%
ACAGGGTTGAATCGAACGAA+AGG - chr1_1:24593977-24593996 Msa0015220:intron 45.0%
CAGGGTTGAATCGAACGAAA+GGG - chr1_1:24593978-24593997 Msa0015220:intron 45.0%
AGGGTTGAATCGAACGAAAG+GGG - chr1_1:24593979-24593998 Msa0015220:intron 45.0%
!! AAATTAAAATATAAATAAAG+GGG + chr1_1:24593850-24593869 None:intergenic 5.0%
!! AAATTAAAATATAAATAAAG+GGG + chr1_1:24593850-24593869 None:intergenic 5.0%
ATAGCGCCATGTGTCAGACT+TGG + chr1_1:24593151-24593170 None:intergenic 50.0%
! GAGTGGTGTTGGAGAAGAGA+AGG + chr1_1:24593231-24593250 None:intergenic 50.0%
GCCATTGTTGTCACACCTCA+TGG - chr1_1:24593780-24593799 Msa0015220:intron 50.0%
AAACCCTGAAATCCAGTGGG+AGG + chr1_1:24594207-24594226 None:intergenic 50.0%
ATAGCGCCATGTGTCAGACT+TGG + chr1_1:24593151-24593170 None:intergenic 50.0%
! GAGTGGTGTTGGAGAAGAGA+AGG + chr1_1:24593231-24593250 None:intergenic 50.0%
GCCATTGTTGTCACACCTCA+TGG - chr1_1:24593780-24593799 Msa0015220:intron 50.0%
AAACCCTGAAATCCAGTGGG+AGG + chr1_1:24594207-24594226 None:intergenic 50.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr1_1:24593147-24593166 None:intergenic 55.0%
AGGAGGGACAAGTGAGAGTG+AGG + chr1_1:24593177-24593196 None:intergenic 55.0%
ATAGCAGTAGGACCTCCCAC+TGG - chr1_1:24594192-24594211 Msa0015220:CDS 55.0%
AGGACCTCCCACTGGATTTC+AGG - chr1_1:24594200-24594219 Msa0015220:CDS 55.0%
GGACCTCCCACTGGATTTCA+GGG - chr1_1:24594201-24594220 Msa0015220:CDS 55.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr1_1:24593147-24593166 None:intergenic 55.0%
AGGAGGGACAAGTGAGAGTG+AGG + chr1_1:24593177-24593196 None:intergenic 55.0%
ATAGCAGTAGGACCTCCCAC+TGG - chr1_1:24594192-24594211 Msa0015220:CDS 55.0%
AGGACCTCCCACTGGATTTC+AGG - chr1_1:24594200-24594219 Msa0015220:CDS 55.0%
GGACCTCCCACTGGATTTCA+GGG - chr1_1:24594201-24594220 Msa0015220:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 24593122 24594335 24593122 ID=Msa0015220;Name=Msa0015220
chr1_1 mRNA 24593122 24594335 24593122 ID=Msa0015220-mRNA-1;Parent=Msa0015220;Name=Msa0015220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=39|1|1|1|1|1|3|93|123
chr1_1 exon 24593122 24593297 24593122 ID=Msa0015220-mRNA-1:exon:8497;Parent=Msa0015220-mRNA-1
chr1_1 exon 24593911 24593974 24593911 ID=Msa0015220-mRNA-1:exon:8496;Parent=Msa0015220-mRNA-1
chr1_1 exon 24594072 24594335 24594072 ID=Msa0015220-mRNA-1:exon:8495;Parent=Msa0015220-mRNA-1
chr1_1 five_prime_UTR 24594297 24594335 24594297 ID=Msa0015220-mRNA-1:five_prime_utr;Parent=Msa0015220-mRNA-1
chr1_1 CDS 24594072 24594296 24594072 ID=Msa0015220-mRNA-1:cds;Parent=Msa0015220-mRNA-1
chr1_1 CDS 24593911 24593974 24593911 ID=Msa0015220-mRNA-1:cds;Parent=Msa0015220-mRNA-1
chr1_1 CDS 24593215 24593297 24593215 ID=Msa0015220-mRNA-1:cds;Parent=Msa0015220-mRNA-1
chr1_1 three_prime_UTR 24593122 24593214 24593122 ID=Msa0015220-mRNA-1:three_prime_utr;Parent=Msa0015220-mRNA-1
Gene Sequence

>Msa0015220

ATGGCGCTATGTTCCTCACTCTCACTTGTCCCTCCTATCATCACTCCATCCAAACTCACTTCAAAATCCTTCTCTTCTCCAACACCACTCAACTTTCATGGCATATTCACTACCAAGAGTAACAAAAACTCAACAAAATTCTTGTTGAATGCTGGTTTCAATCTTATTGAGCCTGACCTTAATGAAGATCCTGTTGATCAATTTCGCACTAATGGCATTCCACCTGAAGAATTTGAGTATGGAATATTTGATGGTCACCATACTTTCAATGAAGGTGAAGAAAAGAAAGGAACATTTTGGGGTGCGATTATGGATGATGTAATAGCAGTAGGACCTCCCACTGGATTTCAGGGTTTGTTTTCAATGCACTAA

Protein sequence

>Msa0015220

MALCSSLSLVPPIITPSKLTSKSFSSPTPLNFHGIFTTKSNKNSTKFLLNAGFNLIEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKKGTFWGAIMDDVIAVGPPTGFQGLFSMH*