AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046050 MtrunA17_Chr1g0213301 92.737 179 5 3 1 179 1 171 4.30e-116 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046050 AT2G34860.2 58.382 173 64 3 15 179 14 186 3.66e-63 193
Msa0046050 AT2G34860.1 58.382 173 64 3 15 179 14 186 3.66e-63 193

Find 69 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTGCTAATGCTGATTTC+TGG 0.190781 1_1:-78063109 Msa0046050:three_prime_UTR
CGCCTGGAAACAACATTTAC+TGG 0.235547 1_1:+78063871 None:intergenic
ACATACCTTCTTCTAAGAAT+TGG 0.272269 1_1:+78063407 None:intergenic
CCAAGCAAAATTTAGAGTTC+TGG 0.281948 1_1:+78062952 None:intergenic
CTTGTCTGCCCTGTTTGTTT+AGG 0.322236 1_1:-78063516 Msa0046050:CDS
ACTGAATGTCCTAATTGTTA+TGG 0.323214 1_1:-78063549 Msa0046050:CDS
CGGAATGGATTGCAATTTGC+AGG 0.323737 1_1:-78064130 Msa0046050:exon
CAGTCACTGGCTTAATTAAC+TGG 0.333554 1_1:+78063066 None:intergenic
CTGAGAAGACCTTTATTGTT+TGG 0.336791 1_1:+78063483 None:intergenic
TTTCCTCGACCATAACAATT+AGG 0.345884 1_1:+78063540 None:intergenic
TGCCCTGTTTGTTTAGGAAC+TGG 0.352275 1_1:-78063510 Msa0046050:CDS
GGTTACTAGTTAGCACCTAT+TGG 0.353176 1_1:-78062931 Msa0046050:three_prime_UTR
CTGCTTGATAAGATGTATAA+TGG 0.353896 1_1:-78063441 Msa0046050:CDS
GAAAATGGAAAGCTCTTAAC+AGG 0.369385 1_1:-78063599 Msa0046050:CDS
TCAAGCAGTTTCTTTGCATC+AGG 0.377519 1_1:+78063456 None:intergenic
CATACCTTCTTCTAAGAATT+GGG 0.381922 1_1:+78063408 None:intergenic
TCCCAGTAAATGTTGTTTCC+AGG 0.390370 1_1:-78063873 Msa0046050:CDS
TGTGTGGTGGTACAGGAAAA+TGG 0.392406 1_1:-78063614 Msa0046050:CDS
ACTGGTGTGCCAAACAATAA+AGG 0.405844 1_1:-78063492 Msa0046050:CDS
ACACCAGTTCCTAAACAAAC+AGG 0.409014 1_1:+78063507 None:intergenic
TACTTGGTAACTATCTATAT+AGG 0.419252 1_1:+78062774 None:intergenic
ATCACTCTCTTCTTCTCCAT+CGG 0.420712 1_1:-78064150 Msa0046050:five_prime_UTR
ACAAAATATTGAAATCCAAT+AGG 0.425468 1_1:+78062916 None:intergenic
TAAATGACTTTCAAAATGTC+AGG 0.443125 1_1:-78062837 Msa0046050:three_prime_UTR
ATCCGCTTGACACATCTTTG+AGG 0.450787 1_1:+78062705 None:intergenic
CGTGGAGAGCACACGACCTA+TGG 0.452594 1_1:-78064219 Msa0046050:five_prime_UTR
CCAGTGACTGCAATGGTAAT+CGG 0.455462 1_1:-78063053 Msa0046050:three_prime_UTR
CCGATTACCATTGCAGTCAC+TGG 0.455630 1_1:+78063053 None:intergenic
TGAACATATACATATTTACT+TGG 0.456697 1_1:+78062758 None:intergenic
ACTTCCCAATTCTTAGAAGA+AGG 0.466180 1_1:-78063412 Msa0046050:intron
AGTTGGAAGAGGAGGAAGAG+TGG 0.470888 1_1:+78064004 None:intergenic
ACCGCTCTTGATAAACCTCC+AGG 0.498198 1_1:-78063787 Msa0046050:CDS
CCACCACAATTTCTGCAACC+TGG 0.498937 1_1:+78063769 None:intergenic
CTAGCAAGTATTGCTATGTA+AGG 0.500666 1_1:-78062798 Msa0046050:three_prime_UTR
GTTTGTTTGATAAAAGAAGT+TGG 0.500841 1_1:+78064081 None:intergenic
TCCACTCTTCCTCAAAATCA+AGG 0.504399 1_1:-78064030 Msa0046050:CDS
TTGTGAGCACAACTGAATTG+AGG 0.504650 1_1:-78063130 Msa0046050:three_prime_UTR
CAAACAATAAAGGTCTTCTC+AGG 0.512552 1_1:-78063482 Msa0046050:CDS
GGTGATATGTGTGGTGGTAC+AGG 0.517437 1_1:-78063621 Msa0046050:CDS
CTGTGTATTCTAAGCTAGCT+AGG 0.523119 1_1:+78063028 None:intergenic
TGCAGAAATTGTGGTGGAAG+TGG 0.524731 1_1:-78063763 Msa0046050:CDS
TCTTCTAAGAATTGGGAAGT+AGG 0.526104 1_1:+78063415 None:intergenic
TCTCTTCTTCTCCATCGGAA+TGG 0.530978 1_1:-78064145 Msa0046050:exon
ACATACCTTGGAGTTGGAAG+AGG 0.537745 1_1:+78063993 None:intergenic
TGATAAAAGAAGTTGGAGGA+AGG 0.545348 1_1:+78064088 None:intergenic
GCCTGGAAACAACATTTACT+GGG 0.549950 1_1:+78063872 None:intergenic
TGTCCTAATTGTTATGGTCG+AGG 0.554383 1_1:-78063543 Msa0046050:CDS
CCTCCAGGTTGCAGAAATTG+TGG 0.558014 1_1:-78063772 Msa0046050:CDS
ATACATACATACCTTGGAGT+TGG 0.560487 1_1:+78063987 None:intergenic
AGAGCACACGACCTATGGAT+TGG 0.561400 1_1:-78064214 Msa0046050:five_prime_UTR
TATATATATATTTGGTCTGG+AGG 0.570551 1_1:-78062979 Msa0046050:three_prime_UTR
ACATTTAAGACATTGACGCC+TGG 0.572047 1_1:+78063855 None:intergenic
TTAACTGGTGGAGAAAATTG+TGG 0.575727 1_1:+78063081 None:intergenic
TACCTTGGAGTTGGAAGAGG+AGG 0.582188 1_1:+78063996 None:intergenic
AAATATCAACTCCAATCCAT+AGG 0.583319 1_1:+78064203 None:intergenic
TTCCTCCTCTTCCAACTCCA+AGG 0.584619 1_1:-78063998 Msa0046050:intron
CAAATTGCAATCCATTCCGA+TGG 0.595484 1_1:+78064134 None:intergenic
ACCTGGAGGTTTATCAAGAG+CGG 0.598366 1_1:+78063786 None:intergenic
ATCCTCAAAGATGTGTCAAG+CGG 0.606936 1_1:-78062707 Msa0046050:three_prime_UTR
CATTTAGGTGATATGTGTGG+TGG 0.616105 1_1:-78063627 Msa0046050:intron
AATTAAGCCAGTGACTGCAA+TGG 0.621433 1_1:-78063060 Msa0046050:three_prime_UTR
ACAATAAAGGTCTTCTCAGG+AGG 0.622506 1_1:-78063479 Msa0046050:CDS
TCACTGGCTTAATTAACTGG+TGG 0.630791 1_1:+78063069 None:intergenic
CCACAATTTCTGCAACCTGG+AGG 0.630868 1_1:+78063772 None:intergenic
CCAGGTTGCAGAAATTGTGG+TGG 0.631837 1_1:-78063769 Msa0046050:CDS
TTTCATTTAGGTGATATGTG+TGG 0.652582 1_1:-78063630 Msa0046050:intron
CACCAGTTCCTAAACAAACA+GGG 0.654127 1_1:+78063508 None:intergenic
TGTTTGATAAAAGAAGTTGG+AGG 0.669703 1_1:+78064084 None:intergenic
GAAGTTGGAGGAAGGCATCG+AGG 0.706960 1_1:+78064096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATT+TGG - chr1_1:78063938-78063957 Msa0046050:intron 0.0%
!! TATATATATATATATATATT+TGG - chr1_1:78063938-78063957 Msa0046050:intron 0.0%
!! TTTGTTGCATTAATTAAAAA+TGG + chr1_1:78063108-78063127 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG - chr1_1:78063623-78063642 Msa0046050:CDS 15.0%
!! AAGCTAAATAAAATATTGTT+GGG - chr1_1:78063624-78063643 Msa0046050:intron 15.0%
!! ATATATATATATATTTGGTC+TGG - chr1_1:78063943-78063962 Msa0046050:intron 15.0%
!! TTTGTTGCATTAATTAAAAA+TGG + chr1_1:78063108-78063127 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG - chr1_1:78063623-78063642 Msa0046050:CDS 15.0%
!! AAGCTAAATAAAATATTGTT+GGG - chr1_1:78063624-78063643 Msa0046050:intron 15.0%
!! ATATATATATATATTTGGTC+TGG - chr1_1:78063943-78063962 Msa0046050:intron 15.0%
!!! TACTACTTTTGATTTCATTT+AGG - chr1_1:78063283-78063302 Msa0046050:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG - chr1_1:78063628-78063647 Msa0046050:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG - chr1_1:78063629-78063648 Msa0046050:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG + chr1_1:78064012-78064031 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG + chr1_1:78064170-78064189 None:intergenic 20.0%
!!! TACTACTTTTGATTTCATTT+AGG - chr1_1:78063283-78063302 Msa0046050:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG - chr1_1:78063628-78063647 Msa0046050:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG - chr1_1:78063629-78063648 Msa0046050:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG + chr1_1:78064012-78064031 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG + chr1_1:78064170-78064189 None:intergenic 20.0%
! GTTTGTTTGATAAAAGAAGT+TGG + chr1_1:78062847-78062866 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG - chr1_1:78062847-78062866 Msa0046050:three_prime_UTR 25.0%
! ATATCATATGATATGAATGC+AGG - chr1_1:78063008-78063027 Msa0046050:three_prime_UTR 25.0%
! ATGTATACTTTCTTCCTTAT+AGG - chr1_1:78063537-78063556 Msa0046050:CDS 25.0%
! TATATATATATTTGGTCTGG+AGG - chr1_1:78063946-78063965 Msa0046050:intron 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG + chr1_1:78064069-78064088 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG - chr1_1:78064088-78064107 Msa0046050:CDS 25.0%
!! TACTTGGTAACTATCTATAT+AGG + chr1_1:78064154-78064173 None:intergenic 25.0%
! GTTTGTTTGATAAAAGAAGT+TGG + chr1_1:78062847-78062866 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG - chr1_1:78062847-78062866 Msa0046050:three_prime_UTR 25.0%
! ATATCATATGATATGAATGC+AGG - chr1_1:78063008-78063027 Msa0046050:three_prime_UTR 25.0%
! ATGTATACTTTCTTCCTTAT+AGG - chr1_1:78063537-78063556 Msa0046050:CDS 25.0%
! TATATATATATTTGGTCTGG+AGG - chr1_1:78063946-78063965 Msa0046050:intron 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG + chr1_1:78064069-78064088 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG - chr1_1:78064088-78064107 Msa0046050:CDS 25.0%
!! TACTTGGTAACTATCTATAT+AGG + chr1_1:78064154-78064173 None:intergenic 25.0%
AAATATCAACTCCAATCCAT+AGG + chr1_1:78062725-78062744 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG + chr1_1:78062844-78062863 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG - chr1_1:78062851-78062870 Msa0046050:three_prime_UTR 30.0%
ACATACATACATACATACCT+TGG + chr1_1:78062947-78062966 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG + chr1_1:78063205-78063224 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG - chr1_1:78063295-78063314 Msa0046050:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG - chr1_1:78063376-78063395 Msa0046050:intron 30.0%
CTGCTTGATAAGATGTATAA+TGG - chr1_1:78063484-78063503 Msa0046050:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG + chr1_1:78063520-78063539 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG + chr1_1:78063521-78063540 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG + chr1_1:78063586-78063605 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG - chr1_1:78063585-78063604 Msa0046050:CDS 30.0%
! TAAAGCACTTGCTTTACTTA+TGG - chr1_1:78063654-78063673 Msa0046050:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG - chr1_1:78063664-78063683 Msa0046050:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG + chr1_1:78063695-78063714 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG + chr1_1:78063708-78063727 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG + chr1_1:78063753-78063772 None:intergenic 30.0%
AAATATCAACTCCAATCCAT+AGG + chr1_1:78062725-78062744 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG + chr1_1:78062844-78062863 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG - chr1_1:78062851-78062870 Msa0046050:three_prime_UTR 30.0%
ACATACATACATACATACCT+TGG + chr1_1:78062947-78062966 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG + chr1_1:78063205-78063224 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG - chr1_1:78063295-78063314 Msa0046050:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG - chr1_1:78063376-78063395 Msa0046050:intron 30.0%
CTGCTTGATAAGATGTATAA+TGG - chr1_1:78063484-78063503 Msa0046050:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG + chr1_1:78063520-78063539 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG + chr1_1:78063521-78063540 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG + chr1_1:78063586-78063605 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG - chr1_1:78063585-78063604 Msa0046050:CDS 30.0%
! TAAAGCACTTGCTTTACTTA+TGG - chr1_1:78063654-78063673 Msa0046050:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG - chr1_1:78063664-78063683 Msa0046050:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG + chr1_1:78063695-78063714 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG + chr1_1:78063708-78063727 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG + chr1_1:78063753-78063772 None:intergenic 30.0%
TGATAAAAGAAGTTGGAGGA+AGG + chr1_1:78062840-78062859 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG + chr1_1:78062941-78062960 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG - chr1_1:78063326-78063345 Msa0046050:intron 35.0%
TTTCCTCGACCATAACAATT+AGG + chr1_1:78063388-78063407 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG + chr1_1:78063445-78063464 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG - chr1_1:78063443-78063462 Msa0046050:CDS 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG + chr1_1:78063513-78063532 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG - chr1_1:78063513-78063532 Msa0046050:CDS 35.0%
ACTTAATGGAGTAGTATCAG+GGG + chr1_1:78063694-78063713 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG + chr1_1:78063696-78063715 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG + chr1_1:78063847-78063866 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG + chr1_1:78063976-78063995 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG - chr1_1:78063973-78063992 Msa0046050:intron 35.0%
! CTAGCAAGTATTGCTATGTA+AGG - chr1_1:78064127-78064146 Msa0046050:CDS 35.0%
TGATAAAAGAAGTTGGAGGA+AGG + chr1_1:78062840-78062859 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG + chr1_1:78062941-78062960 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG - chr1_1:78063326-78063345 Msa0046050:intron 35.0%
TTTCCTCGACCATAACAATT+AGG + chr1_1:78063388-78063407 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG + chr1_1:78063445-78063464 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG - chr1_1:78063443-78063462 Msa0046050:CDS 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG + chr1_1:78063513-78063532 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG - chr1_1:78063513-78063532 Msa0046050:CDS 35.0%
ACTTAATGGAGTAGTATCAG+GGG + chr1_1:78063694-78063713 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG + chr1_1:78063696-78063715 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG + chr1_1:78063847-78063866 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG + chr1_1:78063976-78063995 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG - chr1_1:78063973-78063992 Msa0046050:intron 35.0%
! CTAGCAAGTATTGCTATGTA+AGG - chr1_1:78064127-78064146 Msa0046050:CDS 35.0%
ATCACTCTCTTCTTCTCCAT+CGG - chr1_1:78062775-78062794 Msa0046050:three_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG + chr1_1:78062794-78062813 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG - chr1_1:78062895-78062914 Msa0046050:three_prime_UTR 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG + chr1_1:78062899-78062918 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG - chr1_1:78063029-78063048 Msa0046050:three_prime_UTR 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG - chr1_1:78063052-78063071 Msa0046050:three_prime_UTR 40.0%
GCCTGGAAACAACATTTACT+GGG + chr1_1:78063056-78063075 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG + chr1_1:78063073-78063092 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG - chr1_1:78063298-78063317 Msa0046050:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG - chr1_1:78063382-78063401 Msa0046050:intron 40.0%
CACCAGTTCCTAAACAAACA+GGG + chr1_1:78063420-78063439 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG + chr1_1:78063421-78063440 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG - chr1_1:78063433-78063452 Msa0046050:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG - chr1_1:78063446-78063465 Msa0046050:CDS 40.0%
TCAAGCAGTTTCTTTGCATC+AGG + chr1_1:78063472-78063491 None:intergenic 40.0%
TTGTGAGCACAACTGAATTG+AGG - chr1_1:78063795-78063814 Msa0046050:CDS 40.0%
!! TCACTGGCTTAATTAACTGG+TGG + chr1_1:78063859-78063878 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG + chr1_1:78063862-78063881 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG - chr1_1:78063865-78063884 Msa0046050:CDS 40.0%
CTGTGTATTCTAAGCTAGCT+AGG + chr1_1:78063900-78063919 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG - chr1_1:78063994-78064013 Msa0046050:intron 40.0%
ATCCTCAAAGATGTGTCAAG+CGG - chr1_1:78064218-78064237 Msa0046050:five_prime_UTR 40.0%
ATCACTCTCTTCTTCTCCAT+CGG - chr1_1:78062775-78062794 Msa0046050:three_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG + chr1_1:78062794-78062813 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG - chr1_1:78062895-78062914 Msa0046050:three_prime_UTR 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG + chr1_1:78062899-78062918 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG - chr1_1:78063029-78063048 Msa0046050:three_prime_UTR 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG - chr1_1:78063052-78063071 Msa0046050:three_prime_UTR 40.0%
GCCTGGAAACAACATTTACT+GGG + chr1_1:78063056-78063075 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG + chr1_1:78063073-78063092 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG - chr1_1:78063298-78063317 Msa0046050:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG - chr1_1:78063382-78063401 Msa0046050:intron 40.0%
CACCAGTTCCTAAACAAACA+GGG + chr1_1:78063420-78063439 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG + chr1_1:78063421-78063440 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG - chr1_1:78063433-78063452 Msa0046050:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG - chr1_1:78063446-78063465 Msa0046050:CDS 40.0%
TCAAGCAGTTTCTTTGCATC+AGG + chr1_1:78063472-78063491 None:intergenic 40.0%
TTGTGAGCACAACTGAATTG+AGG - chr1_1:78063795-78063814 Msa0046050:CDS 40.0%
!! TCACTGGCTTAATTAACTGG+TGG + chr1_1:78063859-78063878 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG + chr1_1:78063862-78063881 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG - chr1_1:78063865-78063884 Msa0046050:CDS 40.0%
CTGTGTATTCTAAGCTAGCT+AGG + chr1_1:78063900-78063919 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG - chr1_1:78063994-78064013 Msa0046050:intron 40.0%
TCTCTTCTTCTCCATCGGAA+TGG - chr1_1:78062780-78062799 Msa0046050:three_prime_UTR 45.0%
!! CGGAATGGATTGCAATTTGC+AGG - chr1_1:78062795-78062814 Msa0046050:three_prime_UTR 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG + chr1_1:78062907-78062926 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG + chr1_1:78062935-78062954 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG + chr1_1:78063057-78063076 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG + chr1_1:78063142-78063161 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG - chr1_1:78063162-78063181 Msa0046050:intron 45.0%
TGTGTGGTGGTACAGGAAAA+TGG - chr1_1:78063311-78063330 Msa0046050:intron 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG - chr1_1:78063409-78063428 Msa0046050:intron 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG - chr1_1:78063415-78063434 Msa0046050:exon 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG + chr1_1:78063567-78063586 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG + chr1_1:78063568-78063587 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG + chr1_1:78063572-78063591 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG - chr1_1:78063816-78063835 Msa0046050:CDS 45.0%
CCAGTGACTGCAATGGTAAT+CGG - chr1_1:78063872-78063891 Msa0046050:CDS 45.0%
TCCTCAAAGATGTGTCAAGC+GGG - chr1_1:78064219-78064238 Msa0046050:five_prime_UTR 45.0%
TCTCTTCTTCTCCATCGGAA+TGG - chr1_1:78062780-78062799 Msa0046050:three_prime_UTR 45.0%
!! CGGAATGGATTGCAATTTGC+AGG - chr1_1:78062795-78062814 Msa0046050:three_prime_UTR 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG + chr1_1:78062907-78062926 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG + chr1_1:78062935-78062954 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG + chr1_1:78063057-78063076 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG + chr1_1:78063142-78063161 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG - chr1_1:78063162-78063181 Msa0046050:intron 45.0%
TGTGTGGTGGTACAGGAAAA+TGG - chr1_1:78063311-78063330 Msa0046050:intron 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG - chr1_1:78063409-78063428 Msa0046050:intron 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG - chr1_1:78063415-78063434 Msa0046050:exon 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG + chr1_1:78063567-78063586 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG + chr1_1:78063568-78063587 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG + chr1_1:78063572-78063591 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG - chr1_1:78063816-78063835 Msa0046050:CDS 45.0%
CCAGTGACTGCAATGGTAAT+CGG - chr1_1:78063872-78063891 Msa0046050:CDS 45.0%
AGAGCACACGACCTATGGAT+TGG - chr1_1:78062711-78062730 Msa0046050:three_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG + chr1_1:78062924-78062943 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG - chr1_1:78062927-78062946 Msa0046050:three_prime_UTR 50.0%
TACCTTGGAGTTGGAAGAGG+AGG + chr1_1:78062932-78062951 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG - chr1_1:78063138-78063157 Msa0046050:three_prime_UTR 50.0%
CCACAATTTCTGCAACCTGG+AGG + chr1_1:78063156-78063175 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG - chr1_1:78063153-78063172 Msa0046050:intron 50.0%
CCACCACAATTTCTGCAACC+TGG + chr1_1:78063159-78063178 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG - chr1_1:78063156-78063175 Msa0046050:intron 50.0%
GGTGATATGTGTGGTGGTAC+AGG - chr1_1:78063304-78063323 Msa0046050:intron 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG + chr1_1:78063563-78063582 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG + chr1_1:78063875-78063894 None:intergenic 50.0%
AGAGCACACGACCTATGGAT+TGG - chr1_1:78062711-78062730 Msa0046050:three_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG + chr1_1:78062924-78062943 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG - chr1_1:78062927-78062946 Msa0046050:three_prime_UTR 50.0%
TACCTTGGAGTTGGAAGAGG+AGG + chr1_1:78062932-78062951 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG - chr1_1:78063138-78063157 Msa0046050:three_prime_UTR 50.0%
CCACAATTTCTGCAACCTGG+AGG + chr1_1:78063156-78063175 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG - chr1_1:78063153-78063172 Msa0046050:intron 50.0%
CCACCACAATTTCTGCAACC+TGG + chr1_1:78063159-78063178 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG - chr1_1:78063156-78063175 Msa0046050:intron 50.0%
GGTGATATGTGTGGTGGTAC+AGG - chr1_1:78063304-78063323 Msa0046050:intron 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG + chr1_1:78063563-78063582 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG + chr1_1:78063875-78063894 None:intergenic 50.0%
!! GAAGTTGGAGGAAGGCATCG+AGG + chr1_1:78062832-78062851 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG + chr1_1:78063554-78063573 None:intergenic 55.0%
!! GAAGTTGGAGGAAGGCATCG+AGG + chr1_1:78062832-78062851 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG + chr1_1:78063554-78063573 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78062707 78064240 78062707 ID=Msa0046050;Name=Msa0046050
chr1_1 mRNA 78062707 78064240 78062707 ID=Msa0046050-mRNA-1;Parent=Msa0046050;Name=Msa0046050-mRNA-1;_AED=0.12;_eAED=0.12;_QI=92|1|1|1|0.66|0.75|4|459|179
chr1_1 exon 78062707 78063159 78062707 ID=Msa0046050-mRNA-1:exon:26796;Parent=Msa0046050-mRNA-1
chr1_1 exon 78063413 78063642 78063413 ID=Msa0046050-mRNA-1:exon:26795;Parent=Msa0046050-mRNA-1
chr1_1 exon 78063752 78063917 78063752 ID=Msa0046050-mRNA-1:exon:26794;Parent=Msa0046050-mRNA-1
chr1_1 exon 78063999 78064240 78063999 ID=Msa0046050-mRNA-1:exon:26793;Parent=Msa0046050-mRNA-1
chr1_1 five_prime_UTR 78064149 78064240 78064149 ID=Msa0046050-mRNA-1:five_prime_utr;Parent=Msa0046050-mRNA-1
chr1_1 CDS 78063999 78064148 78063999 ID=Msa0046050-mRNA-1:cds;Parent=Msa0046050-mRNA-1
chr1_1 CDS 78063752 78063917 78063752 ID=Msa0046050-mRNA-1:cds;Parent=Msa0046050-mRNA-1
chr1_1 CDS 78063419 78063642 78063419 ID=Msa0046050-mRNA-1:cds;Parent=Msa0046050-mRNA-1
chr1_1 three_prime_UTR 78063413 78063418 78063413 ID=Msa0046050-mRNA-1:three_prime_utr;Parent=Msa0046050-mRNA-1
chr1_1 three_prime_UTR 78062707 78063159 78062707 ID=Msa0046050-mRNA-1:three_prime_utr;Parent=Msa0046050-mRNA-1
Gene Sequence

>Msa0046050

ATGGATTGCAATTTGCAGGCGTCTGTTATTCCTCGATGCCTTCCTCCAACTTCTTTTATCAAACAAACAGGAAGGACGCGTTCTTTTATTGTTAAATCCACTCTTCCTCAAAATCAAGGACACCACTCTTCCTCCTCTTCCAACTCCAAGGAAGAAGAAGAAGAAGAAGTGGTCCCAGTAAATGTTGTTTCCAGGCGTCAATGTCTTAAATGTTTATGTTCAACTCCATTTTTAATTAATGCAACAAACGCAGCAGCAACCGCTCTTGATAAACCTCCAGGTTGCAGAAATTGTGGTGGAAGTGGTAACATCATCTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCACAAGATGTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAGGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAAACAATAAAGGTCTTCTCAGGAGGCCTGATGCAAAGAAACTGCTTGATAAGATGTATAATGGACGCCTACTTCCCAATTCTTAG

Protein sequence

>Msa0046050

MDCNLQASVIPRCLPPTSFIKQTGRTRSFIVKSTLPQNQGHHSSSSSNSKEEEEEEVVPVNVVSRRQCLKCLCSTPFLINATNAAATALDKPPGCRNCGGSGNIICDMCGGTGKWKALNRKRAQDVYEFTECPNCYGRGKLVCPVCLGTGVPNNKGLLRRPDAKKLLDKMYNGRLLPNS*