AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706300 MtrunA17_Chr8g0385601 91.892 222 16 1 1 220 1 222 5.51e-153 423
Msa0706300 MtrunA17_Chr8g0385631 82.192 219 39 0 1 219 1 219 1.60e-128 361
Msa0706300 MtrunA17_Chr3g0131541 66.316 190 57 3 1 187 1 186 6.12e-90 263
Msa0706300 MtrunA17_Chr3g0131551 61.053 190 71 2 1 187 7 196 1.48e-82 245
Msa0706300 MtrunA17_Chr8g0385611 71.338 157 45 0 1 157 1 157 5.14e-76 226
Msa0706300 MtrunA17_Chr8g0385621 74.545 55 13 1 158 211 1 55 5.47e-21 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706300 AT3G23760.1 62.162 185 67 2 9 191 11 194 1.52e-83 247
Msa0706300 AT4G14100.1 55.556 198 87 1 9 206 8 204 7.11e-81 240

Find 84 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTTCTGTTGTGTATT+TGG 0.136397 4_4:-79284860 None:intergenic
GCTTGATGGTGCTAATTATT+TGG 0.169784 4_4:+79284519 Msa0706300:CDS
TTAAATGTTTCTCAACCTTT+AGG 0.198335 4_4:-79284079 None:intergenic
CTAAGCTATAATCTTTGTTT+TGG 0.212095 4_4:+79285009 Msa0706300:three_prime_UTR
GCTCCTTCTGTTGTGTATTT+GGG 0.213711 4_4:-79284859 None:intergenic
TCCGGCCACGGCGCCGGAAT+TGG 0.215529 4_4:-79284268 None:intergenic
TAAATGTTTCTCAACCTTTA+GGG 0.250443 4_4:-79284078 None:intergenic
GGGAGAAAGTCGAATTTATT+TGG 0.267906 4_4:+79284578 Msa0706300:CDS
CCACGACCCAATTGGCTTGA+TGG 0.304709 4_4:+79284505 Msa0706300:CDS
GGCCATTGCTTTGCTGATTT+CGG 0.306463 4_4:-79284167 None:intergenic
CTTGATGGTGCTAATTATTT+GGG 0.312059 4_4:+79284520 Msa0706300:CDS
TTAATTATGATGTCACTAAA+AGG 0.338331 4_4:+79283987 Msa0706300:five_prime_UTR
CCGGCCACGGCGCCGGAATT+GGG 0.367218 4_4:-79284267 None:intergenic
TGAGAACATCAAGCTGGTAT+TGG 0.386461 4_4:-79284387 None:intergenic
AGGACTGAGTGGAACTGTTC+CGG 0.404511 4_4:-79284286 None:intergenic
ATTAGCACCATCAAGCCAAT+TGG 0.405118 4_4:-79284512 None:intergenic
GACCACAGAGGACCCAATTC+CGG 0.405830 4_4:+79284255 Msa0706300:CDS
ATTATTTCACTGGAGAAAAC+AGG 0.413735 4_4:+79284024 Msa0706300:five_prime_UTR
TATAAATCATATGATATTGT+TGG 0.417733 4_4:-79284959 None:intergenic
TTCTCAAATATGACCTTGAA+TGG 0.424620 4_4:+79284404 Msa0706300:CDS
GATGGCTAAGATTATTTCAC+TGG 0.428284 4_4:+79284014 Msa0706300:five_prime_UTR
GGTTTATAATAAGCTTTGCT+TGG 0.428823 4_4:+79285047 Msa0706300:three_prime_UTR
AATGTTGAAATTTCGTCCAT+TGG 0.430457 4_4:-79284362 None:intergenic
CAGTATGAACGACGTGGATA+AGG 0.432799 4_4:-79284121 None:intergenic
ATGTTGAAATTTCGTCCATT+GGG 0.444878 4_4:-79284361 None:intergenic
CTCTTCGAAAACAAGACTTA+TGG 0.444999 4_4:+79284329 Msa0706300:CDS
AACTGTTCCGGCCACGGCGC+CGG 0.448851 4_4:-79284274 None:intergenic
TGGTGCCATTGTTCCATTCA+AGG 0.450465 4_4:-79284417 None:intergenic
ATAAATCATATGATATTGTT+GGG 0.451260 4_4:-79284958 None:intergenic
CCCAATTCCGGCGCCGTGGC+CGG 0.459468 4_4:+79284267 Msa0706300:CDS
TTGGTATTCCACGACCCAAT+TGG 0.459870 4_4:+79284497 Msa0706300:CDS
GTTTATAATAAGCTTTGCTT+GGG 0.470461 4_4:+79285048 Msa0706300:three_prime_UTR
AACATTACACAGAAAATTGT+CGG 0.472163 4_4:-79284554 None:intergenic
ACTAATGAGTGAGATGAGAT+AGG 0.485469 4_4:+79284932 Msa0706300:CDS
CTCCTTCTGTTGTGTATTTG+GGG 0.486624 4_4:-79284858 None:intergenic
CTTATTTATAGTAACAAAGA+TGG 0.497250 4_4:-79285118 None:intergenic
AGCCGCTTCTGTTGAGGAGT+AGG 0.512649 4_4:-79284306 None:intergenic
TATGATGTCACTAAAAGGAA+TGG 0.513228 4_4:+79283992 Msa0706300:five_prime_UTR
ACTTTGCAAGTGTGCTCGAA+AGG 0.514114 4_4:-79284460 None:intergenic
ACTAGATGATGCCCATTGGC+AGG 0.516637 4_4:+79284800 Msa0706300:CDS
TTAGCACCATCAAGCCAATT+GGG 0.517591 4_4:-79284511 None:intergenic
AACAAGACTTATGGTACGAT+TGG 0.522229 4_4:+79284338 Msa0706300:CDS
GAGTGGAACTGTTCCGGCCA+CGG 0.525676 4_4:-79284280 None:intergenic
TGGTCGAAGTTGAGAGATGA+AGG 0.525737 4_4:-79284237 None:intergenic
ATTGCTTTGCTGATTTCGGA+AGG 0.543100 4_4:-79284163 None:intergenic
AATGCATTCTTCTGTGGCAG+TGG 0.543910 4_4:-79284188 None:intergenic
GAAGAGAGCCGCTTCTGTTG+AGG 0.544198 4_4:-79284312 None:intergenic
TACTGATGTGATGACATTTG+AGG 0.549841 4_4:+79284767 Msa0706300:CDS
AATAGACAGGAGCCTGCCAA+TGG 0.552630 4_4:-79284812 None:intergenic
TTATGGTACGATTGGCCCAA+TGG 0.556501 4_4:+79284346 Msa0706300:CDS
AAACAGGAGAAAATTTCCAC+TGG 0.563115 4_4:+79284040 Msa0706300:five_prime_UTR
CTTTGCAAGTGTGCTCGAAA+GGG 0.564893 4_4:-79284459 None:intergenic
AATGTTTCTCAACCTTTAGG+GGG 0.568775 4_4:-79284076 None:intergenic
AAGTTGAGAGATGAAGGAAG+AGG 0.569210 4_4:-79284231 None:intergenic
ATGTCACTAAAAGGAATGGA+TGG 0.574281 4_4:+79283996 Msa0706300:five_prime_UTR
AAATGTTTCTCAACCTTTAG+GGG 0.575986 4_4:-79284077 None:intergenic
CCATCAAGCCAATTGGGTCG+TGG 0.576651 4_4:-79284505 None:intergenic
ATAGACAGGAGCCTGCCAAT+GGG 0.577912 4_4:-79284811 None:intergenic
GTCCTACTCCTCAACAGAAG+CGG 0.579821 4_4:+79284304 Msa0706300:CDS
AACCCCAAATACACAACAGA+AGG 0.582352 4_4:+79284856 Msa0706300:CDS
GGAGAAAATTTCCACTGGAG+TGG 0.588567 4_4:+79284045 Msa0706300:five_prime_UTR
CGGTACTAGATGATGCCCAT+TGG 0.589936 4_4:+79284796 Msa0706300:CDS
TCGTAGAAGATCCACTTGAC+AGG 0.590706 4_4:-79284628 None:intergenic
TCACTAAAAGACCTGTCAAG+TGG 0.590795 4_4:+79284617 Msa0706300:CDS
TTCCGAAATCAGCAAAGCAA+TGG 0.591383 4_4:+79284165 Msa0706300:exon
TATGACCTTGAATGGAACAA+TGG 0.591932 4_4:+79284412 Msa0706300:CDS
GCCTTACTAAAACAATAGAC+AGG 0.594404 4_4:-79284825 None:intergenic
CATATTTGAGAACATCAAGC+TGG 0.600302 4_4:-79284393 None:intergenic
AGGGTCGAGAGTGTAGAGAA+AGG 0.604953 4_4:-79284440 None:intergenic
CAAACAAATGCATTCTTCTG+TGG 0.604964 4_4:-79284194 None:intergenic
ATGTTTCTCAACCTTTAGGG+GGG 0.622446 4_4:-79284075 None:intergenic
CGCCGGAATTGGGTCCTCTG+TGG 0.626171 4_4:-79284257 None:intergenic
GGGGAGAGGATCCACTCCAG+TGG 0.628316 4_4:-79284056 None:intergenic
GATGTGATGACATTTGAGGT+TGG 0.629445 4_4:+79284771 Msa0706300:CDS
GTCAAGTGGATCTTCTACGA+TGG 0.629602 4_4:+79284631 Msa0706300:CDS
AGGACCCAATTCCGGCGCCG+TGG 0.635409 4_4:+79284263 Msa0706300:CDS
AATCATATGATATTGTTGGG+TGG 0.638483 4_4:-79284955 None:intergenic
AAAGTGACTCAATATGATGT+TGG 0.647948 4_4:+79284478 Msa0706300:CDS
TGTTGAGGAGTAGGACTGAG+TGG 0.648618 4_4:-79284297 None:intergenic
GTCGAGAGTGTAGAGAAAGG+TGG 0.677328 4_4:-79284437 None:intergenic
CAGTATCAGTATGAACGACG+TGG 0.680246 4_4:-79284127 None:intergenic
TCTCTCAACTTCGACCACAG+AGG 0.720290 4_4:+79284243 Msa0706300:CDS
GATGACATTTGAGGTTGGAG+CGG 0.735775 4_4:+79284776 Msa0706300:CDS
CTTATTATAAACCAGCACCG+AGG 0.780023 4_4:-79285037 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTCATTATATGATGAT+TGG + chr4_4:79284728-79284747 Msa0706300:intron 15.0%
!! ATAAATCATATGATATTGTT+GGG - chr4_4:79284961-79284980 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG - chr4_4:79284962-79284981 None:intergenic 15.0%
!! TAAATTCATTATATGATGAT+TGG + chr4_4:79284728-79284747 Msa0706300:intron 15.0%
!! ATAAATCATATGATATTGTT+GGG - chr4_4:79284961-79284980 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG - chr4_4:79284962-79284981 None:intergenic 15.0%
!! TTAATTATGATGTCACTAAA+AGG + chr4_4:79283987-79284006 Msa0706300:five_prime_UTR 20.0%
!!! TAAGCTATAATCTTTGTTTT+GGG + chr4_4:79285010-79285029 Msa0706300:three_prime_UTR 20.0%
!! TTAATTATGATGTCACTAAA+AGG + chr4_4:79283987-79284006 Msa0706300:five_prime_UTR 20.0%
!!! TAAGCTATAATCTTTGTTTT+GGG + chr4_4:79285010-79285029 Msa0706300:three_prime_UTR 20.0%
! TAAATGTTTCTCAACCTTTA+GGG - chr4_4:79284081-79284100 None:intergenic 25.0%
! TTAAATGTTTCTCAACCTTT+AGG - chr4_4:79284082-79284101 None:intergenic 25.0%
! AACATTACACAGAAAATTGT+CGG - chr4_4:79284557-79284576 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG + chr4_4:79284557-79284576 Msa0706300:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG + chr4_4:79284558-79284577 Msa0706300:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG + chr4_4:79284682-79284701 Msa0706300:intron 25.0%
!!! CTAAGCTATAATCTTTGTTT+TGG + chr4_4:79285009-79285028 Msa0706300:three_prime_UTR 25.0%
!!! AAGCTATAATCTTTGTTTTG+GGG + chr4_4:79285011-79285030 Msa0706300:three_prime_UTR 25.0%
! GTTTATAATAAGCTTTGCTT+GGG + chr4_4:79285048-79285067 Msa0706300:three_prime_UTR 25.0%
! TAAATGTTTCTCAACCTTTA+GGG - chr4_4:79284081-79284100 None:intergenic 25.0%
! TTAAATGTTTCTCAACCTTT+AGG - chr4_4:79284082-79284101 None:intergenic 25.0%
! AACATTACACAGAAAATTGT+CGG - chr4_4:79284557-79284576 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG + chr4_4:79284557-79284576 Msa0706300:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG + chr4_4:79284558-79284577 Msa0706300:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG + chr4_4:79284682-79284701 Msa0706300:intron 25.0%
!!! CTAAGCTATAATCTTTGTTT+TGG + chr4_4:79285009-79285028 Msa0706300:three_prime_UTR 25.0%
!!! AAGCTATAATCTTTGTTTTG+GGG + chr4_4:79285011-79285030 Msa0706300:three_prime_UTR 25.0%
! GTTTATAATAAGCTTTGCTT+GGG + chr4_4:79285048-79285067 Msa0706300:three_prime_UTR 25.0%
TATGATGTCACTAAAAGGAA+TGG + chr4_4:79283992-79284011 Msa0706300:five_prime_UTR 30.0%
ATTATTTCACTGGAGAAAAC+AGG + chr4_4:79284024-79284043 Msa0706300:five_prime_UTR 30.0%
AAATGTTTCTCAACCTTTAG+GGG - chr4_4:79284080-79284099 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG - chr4_4:79284364-79284383 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG - chr4_4:79284365-79284384 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG + chr4_4:79284404-79284423 Msa0706300:CDS 30.0%
AAAGTGACTCAATATGATGT+TGG + chr4_4:79284478-79284497 Msa0706300:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG + chr4_4:79284520-79284539 Msa0706300:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG + chr4_4:79284824-79284843 Msa0706300:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG + chr4_4:79284907-79284926 Msa0706300:CDS 30.0%
AATCATATGATATTGTTGGG+TGG - chr4_4:79284958-79284977 None:intergenic 30.0%
GGTTTATAATAAGCTTTGCT+TGG + chr4_4:79285047-79285066 Msa0706300:three_prime_UTR 30.0%
TATGATGTCACTAAAAGGAA+TGG + chr4_4:79283992-79284011 Msa0706300:five_prime_UTR 30.0%
ATTATTTCACTGGAGAAAAC+AGG + chr4_4:79284024-79284043 Msa0706300:five_prime_UTR 30.0%
AAATGTTTCTCAACCTTTAG+GGG - chr4_4:79284080-79284099 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG - chr4_4:79284364-79284383 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG - chr4_4:79284365-79284384 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG + chr4_4:79284404-79284423 Msa0706300:CDS 30.0%
AAAGTGACTCAATATGATGT+TGG + chr4_4:79284478-79284497 Msa0706300:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG + chr4_4:79284520-79284539 Msa0706300:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG + chr4_4:79284824-79284843 Msa0706300:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG + chr4_4:79284907-79284926 Msa0706300:CDS 30.0%
AATCATATGATATTGTTGGG+TGG - chr4_4:79284958-79284977 None:intergenic 30.0%
GGTTTATAATAAGCTTTGCT+TGG + chr4_4:79285047-79285066 Msa0706300:three_prime_UTR 30.0%
ATGTCACTAAAAGGAATGGA+TGG + chr4_4:79283996-79284015 Msa0706300:five_prime_UTR 35.0%
GATGGCTAAGATTATTTCAC+TGG + chr4_4:79284014-79284033 Msa0706300:five_prime_UTR 35.0%
AAACAGGAGAAAATTTCCAC+TGG + chr4_4:79284040-79284059 Msa0706300:five_prime_UTR 35.0%
AATGTTTCTCAACCTTTAGG+GGG - chr4_4:79284079-79284098 None:intergenic 35.0%
CAAACAAATGCATTCTTCTG+TGG - chr4_4:79284197-79284216 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG + chr4_4:79284329-79284348 Msa0706300:CDS 35.0%
AACAAGACTTATGGTACGAT+TGG + chr4_4:79284338-79284357 Msa0706300:CDS 35.0%
CATATTTGAGAACATCAAGC+TGG - chr4_4:79284396-79284415 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG + chr4_4:79284412-79284431 Msa0706300:CDS 35.0%
!! GCTTGATGGTGCTAATTATT+TGG + chr4_4:79284519-79284538 Msa0706300:CDS 35.0%
GGGAGAAAGTCGAATTTATT+TGG + chr4_4:79284578-79284597 Msa0706300:CDS 35.0%
TACTGATGTGATGACATTTG+AGG + chr4_4:79284767-79284786 Msa0706300:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG - chr4_4:79284828-79284847 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG + chr4_4:79284830-79284849 Msa0706300:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG + chr4_4:79284932-79284951 Msa0706300:CDS 35.0%
ATGTCACTAAAAGGAATGGA+TGG + chr4_4:79283996-79284015 Msa0706300:five_prime_UTR 35.0%
GATGGCTAAGATTATTTCAC+TGG + chr4_4:79284014-79284033 Msa0706300:five_prime_UTR 35.0%
AAACAGGAGAAAATTTCCAC+TGG + chr4_4:79284040-79284059 Msa0706300:five_prime_UTR 35.0%
AATGTTTCTCAACCTTTAGG+GGG - chr4_4:79284079-79284098 None:intergenic 35.0%
CAAACAAATGCATTCTTCTG+TGG - chr4_4:79284197-79284216 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG + chr4_4:79284329-79284348 Msa0706300:CDS 35.0%
AACAAGACTTATGGTACGAT+TGG + chr4_4:79284338-79284357 Msa0706300:CDS 35.0%
CATATTTGAGAACATCAAGC+TGG - chr4_4:79284396-79284415 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG + chr4_4:79284412-79284431 Msa0706300:CDS 35.0%
!! GCTTGATGGTGCTAATTATT+TGG + chr4_4:79284519-79284538 Msa0706300:CDS 35.0%
GGGAGAAAGTCGAATTTATT+TGG + chr4_4:79284578-79284597 Msa0706300:CDS 35.0%
TACTGATGTGATGACATTTG+AGG + chr4_4:79284767-79284786 Msa0706300:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG - chr4_4:79284828-79284847 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG + chr4_4:79284830-79284849 Msa0706300:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG + chr4_4:79284932-79284951 Msa0706300:CDS 35.0%
! ATGTTTCTCAACCTTTAGGG+GGG - chr4_4:79284078-79284097 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG - chr4_4:79284166-79284185 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG + chr4_4:79284165-79284184 Msa0706300:exon 40.0%
AAGTTGAGAGATGAAGGAAG+AGG - chr4_4:79284234-79284253 None:intergenic 40.0%
TGAGAACATCAAGCTGGTAT+TGG - chr4_4:79284390-79284409 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG - chr4_4:79284514-79284533 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG - chr4_4:79284515-79284534 None:intergenic 40.0%
TCACTAAAAGACCTGTCAAG+TGG + chr4_4:79284617-79284636 Msa0706300:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG + chr4_4:79284738-79284757 Msa0706300:intron 40.0%
! GATGTGATGACATTTGAGGT+TGG + chr4_4:79284771-79284790 Msa0706300:CDS 40.0%
AACCCCAAATACACAACAGA+AGG + chr4_4:79284856-79284875 Msa0706300:CDS 40.0%
CTCCTTCTGTTGTGTATTTG+GGG - chr4_4:79284861-79284880 None:intergenic 40.0%
GCTCCTTCTGTTGTGTATTT+GGG - chr4_4:79284862-79284881 None:intergenic 40.0%
TGCTCCTTCTGTTGTGTATT+TGG - chr4_4:79284863-79284882 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG - chr4_4:79285040-79285059 None:intergenic 40.0%
! ATGTTTCTCAACCTTTAGGG+GGG - chr4_4:79284078-79284097 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG - chr4_4:79284166-79284185 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG + chr4_4:79284165-79284184 Msa0706300:exon 40.0%
AAGTTGAGAGATGAAGGAAG+AGG - chr4_4:79284234-79284253 None:intergenic 40.0%
TGAGAACATCAAGCTGGTAT+TGG - chr4_4:79284390-79284409 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG - chr4_4:79284514-79284533 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG - chr4_4:79284515-79284534 None:intergenic 40.0%
TCACTAAAAGACCTGTCAAG+TGG + chr4_4:79284617-79284636 Msa0706300:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG + chr4_4:79284738-79284757 Msa0706300:intron 40.0%
! GATGTGATGACATTTGAGGT+TGG + chr4_4:79284771-79284790 Msa0706300:CDS 40.0%
AACCCCAAATACACAACAGA+AGG + chr4_4:79284856-79284875 Msa0706300:CDS 40.0%
CTCCTTCTGTTGTGTATTTG+GGG - chr4_4:79284861-79284880 None:intergenic 40.0%
GCTCCTTCTGTTGTGTATTT+GGG - chr4_4:79284862-79284881 None:intergenic 40.0%
TGCTCCTTCTGTTGTGTATT+TGG - chr4_4:79284863-79284882 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG - chr4_4:79285040-79285059 None:intergenic 40.0%
GGAGAAAATTTCCACTGGAG+TGG + chr4_4:79284045-79284064 Msa0706300:five_prime_UTR 45.0%
CAGTATGAACGACGTGGATA+AGG - chr4_4:79284124-79284143 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG - chr4_4:79284130-79284149 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG - chr4_4:79284170-79284189 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+TGG - chr4_4:79284191-79284210 None:intergenic 45.0%
TGGTCGAAGTTGAGAGATGA+AGG - chr4_4:79284240-79284259 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG + chr4_4:79284346-79284365 Msa0706300:CDS 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG - chr4_4:79284420-79284439 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG - chr4_4:79284462-79284481 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG - chr4_4:79284463-79284482 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG + chr4_4:79284497-79284516 Msa0706300:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG - chr4_4:79284631-79284650 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+TGG + chr4_4:79284631-79284650 Msa0706300:CDS 45.0%
! GATGACATTTGAGGTTGGAG+CGG + chr4_4:79284776-79284795 Msa0706300:CDS 45.0%
!!! TCTTTGTTTTGGGGAGTCCT+CGG + chr4_4:79285020-79285039 Msa0706300:three_prime_UTR 45.0%
GGAGAAAATTTCCACTGGAG+TGG + chr4_4:79284045-79284064 Msa0706300:five_prime_UTR 45.0%
CAGTATGAACGACGTGGATA+AGG - chr4_4:79284124-79284143 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG - chr4_4:79284130-79284149 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG - chr4_4:79284170-79284189 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+TGG - chr4_4:79284191-79284210 None:intergenic 45.0%
TGGTCGAAGTTGAGAGATGA+AGG - chr4_4:79284240-79284259 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG + chr4_4:79284346-79284365 Msa0706300:CDS 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG - chr4_4:79284420-79284439 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG - chr4_4:79284462-79284481 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG - chr4_4:79284463-79284482 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG + chr4_4:79284497-79284516 Msa0706300:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG - chr4_4:79284631-79284650 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+TGG + chr4_4:79284631-79284650 Msa0706300:CDS 45.0%
! GATGACATTTGAGGTTGGAG+CGG + chr4_4:79284776-79284795 Msa0706300:CDS 45.0%
!!! TCTTTGTTTTGGGGAGTCCT+CGG + chr4_4:79285020-79285039 Msa0706300:three_prime_UTR 45.0%
TCTCTCAACTTCGACCACAG+AGG + chr4_4:79284243-79284262 Msa0706300:CDS 50.0%
AGGACTGAGTGGAACTGTTC+CGG - chr4_4:79284289-79284308 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG - chr4_4:79284300-79284319 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG + chr4_4:79284304-79284323 Msa0706300:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG - chr4_4:79284440-79284459 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG - chr4_4:79284443-79284462 None:intergenic 50.0%
CGGTACTAGATGATGCCCAT+TGG + chr4_4:79284796-79284815 Msa0706300:CDS 50.0%
ACTAGATGATGCCCATTGGC+AGG + chr4_4:79284800-79284819 Msa0706300:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG - chr4_4:79284814-79284833 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG - chr4_4:79284815-79284834 None:intergenic 50.0%
TCTCTCAACTTCGACCACAG+AGG + chr4_4:79284243-79284262 Msa0706300:CDS 50.0%
AGGACTGAGTGGAACTGTTC+CGG - chr4_4:79284289-79284308 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG - chr4_4:79284300-79284319 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG + chr4_4:79284304-79284323 Msa0706300:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG - chr4_4:79284440-79284459 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG - chr4_4:79284443-79284462 None:intergenic 50.0%
CGGTACTAGATGATGCCCAT+TGG + chr4_4:79284796-79284815 Msa0706300:CDS 50.0%
ACTAGATGATGCCCATTGGC+AGG + chr4_4:79284800-79284819 Msa0706300:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG - chr4_4:79284814-79284833 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG - chr4_4:79284815-79284834 None:intergenic 50.0%
! TCTCAACCTTTAGGGGGGAG+AGG - chr4_4:79284073-79284092 None:intergenic 55.0%
GACCACAGAGGACCCAATTC+CGG + chr4_4:79284255-79284274 Msa0706300:CDS 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG - chr4_4:79284309-79284328 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG - chr4_4:79284315-79284334 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG - chr4_4:79284508-79284527 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG + chr4_4:79284505-79284524 Msa0706300:CDS 55.0%
! TCTCAACCTTTAGGGGGGAG+AGG - chr4_4:79284073-79284092 None:intergenic 55.0%
GACCACAGAGGACCCAATTC+CGG + chr4_4:79284255-79284274 Msa0706300:CDS 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG - chr4_4:79284309-79284328 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG - chr4_4:79284315-79284334 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG - chr4_4:79284508-79284527 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG + chr4_4:79284505-79284524 Msa0706300:CDS 55.0%
GTGGATCCTCTCCCCCCTAA+AGG + chr4_4:79284064-79284083 Msa0706300:five_prime_UTR 60.0%
GAGTGGAACTGTTCCGGCCA+CGG - chr4_4:79284283-79284302 None:intergenic 60.0%
!! TTTTGGGGAGTCCTCGGTGC+TGG + chr4_4:79285026-79285045 Msa0706300:three_prime_UTR 60.0%
GTGGATCCTCTCCCCCCTAA+AGG + chr4_4:79284064-79284083 Msa0706300:five_prime_UTR 60.0%
GAGTGGAACTGTTCCGGCCA+CGG - chr4_4:79284283-79284302 None:intergenic 60.0%
!! TTTTGGGGAGTCCTCGGTGC+TGG + chr4_4:79285026-79285045 Msa0706300:three_prime_UTR 60.0%
GGGGAGAGGATCCACTCCAG+TGG - chr4_4:79284059-79284078 None:intergenic 65.0%
CGCCGGAATTGGGTCCTCTG+TGG - chr4_4:79284260-79284279 None:intergenic 65.0%
GGGGAGAGGATCCACTCCAG+TGG - chr4_4:79284059-79284078 None:intergenic 65.0%
CGCCGGAATTGGGTCCTCTG+TGG - chr4_4:79284260-79284279 None:intergenic 65.0%
AGGACCCAATTCCGGCGCCG+TGG + chr4_4:79284263-79284282 Msa0706300:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG - chr4_4:79284277-79284296 None:intergenic 70.0%
AGGACCCAATTCCGGCGCCG+TGG + chr4_4:79284263-79284282 Msa0706300:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG - chr4_4:79284277-79284296 None:intergenic 70.0%
! CCGGCCACGGCGCCGGAATT+GGG - chr4_4:79284270-79284289 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG + chr4_4:79284267-79284286 Msa0706300:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG - chr4_4:79284271-79284290 None:intergenic 75.0%
! CCGGCCACGGCGCCGGAATT+GGG - chr4_4:79284270-79284289 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG + chr4_4:79284267-79284286 Msa0706300:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG - chr4_4:79284271-79284290 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79283975 79285137 79283975 ID=Msa0706300;Name=Msa0706300
chr4_4 mRNA 79283975 79285137 79283975 ID=Msa0706300-mRNA-1;Parent=Msa0706300;Name=Msa0706300-mRNA-1;_AED=0.34;_eAED=0.34;_QI=209|1|1|1|1|1|2|184|220
chr4_4 exon 79283975 79284652 79283975 ID=Msa0706300-mRNA-1:exon:25511;Parent=Msa0706300-mRNA-1
chr4_4 exon 79284760 79285137 79284760 ID=Msa0706300-mRNA-1:exon:25512;Parent=Msa0706300-mRNA-1
chr4_4 five_prime_UTR 79283975 79284183 79283975 ID=Msa0706300-mRNA-1:five_prime_utr;Parent=Msa0706300-mRNA-1
chr4_4 CDS 79284184 79284652 79284184 ID=Msa0706300-mRNA-1:cds;Parent=Msa0706300-mRNA-1
chr4_4 CDS 79284760 79284953 79284760 ID=Msa0706300-mRNA-1:cds;Parent=Msa0706300-mRNA-1
chr4_4 three_prime_UTR 79284954 79285137 79284954 ID=Msa0706300-mRNA-1:three_prime_utr;Parent=Msa0706300-mRNA-1
Gene Sequence

>Msa0706300

ATGGCCACTGCCACAGAAGAATGCATTTGTTTGTTTTTGTGTCTCTTCCTCTTCCTTCATCTCTCAACTTCGACCACAGAGGACCCAATTCCGGCGCCGTGGCCGGAACAGTTCCACTCAGTCCTACTCCTCAACAGAAGCGGCTCTCTTCGAAAACAAGACTTATGGTACGATTGGCCCAATGGACGAAATTTCAACATTATCCAATACCAGCTTGATGTTCTCAAATATGACCTTGAATGGAACAATGGCACCACCTTTCTCTACACTCTCGACCCTTTCGAGCACACTTGCAAAGTGACTCAATATGATGTTGGTATTCCACGACCCAATTGGCTTGATGGTGCTAATTATTTGGGTCAACAATATGCCGACAATTTTCTGTGTAATGTTTGGGAGAAAGTCGAATTTATTTGGTACTTTGAAGATGTTCTCACTAAAAGACCTGTCAAGTGGATCTTCTACGATGGAATGATTACTGATGTGATGACATTTGAGGTTGGAGCGGTACTAGATGATGCCCATTGGCAGGCTCCTGTCTATTGTTTTAGTAAGGCTGAGGCTGAACCCCAAATACACAACAGAAGGAGCAGTTTCTCATTAGATTTAGAAGCTGCTATTGTTGATGATTTTCGTTGGACACTAATGAGTGAGATGAGATAG

Protein sequence

>Msa0706300

MATATEECICLFLCLFLFLHLSTSTTEDPIPAPWPEQFHSVLLLNRSGSLRKQDLWYDWPNGRNFNIIQYQLDVLKYDLEWNNGTTFLYTLDPFEHTCKVTQYDVGIPRPNWLDGANYLGQQYADNFLCNVWEKVEFIWYFEDVLTKRPVKWIFYDGMITDVMTFEVGAVLDDAHWQAPVYCFSKAEAEPQIHNRRSSFSLDLEAAIVDDFRWTLMSEMR*