AlfalfaGEDB | Msa0706300

M. sativa cultivar zhongmu-4 / Msa0706300

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706300	XP_013446933.1	91.892	222	16	1	1	220	1	222	5.99e-149	423

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706300	sp\|Q67YC9\|Y4141_ARATH	55.556	198	87	1	9	206	8	204	6.99e-80	240

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706300	A0A072U547	91.892	222	16	1	1	220	1	222	2.86e-149	423

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0706300	0.813722	2.216460e-51	-8.615850e-47
Msa0001420	Msa0706300	0.808046	3.753248e-50	-8.615850e-47
Msa0001510	Msa0706300	0.910860	1.166514e-82	-8.615850e-47
Msa0001540	Msa0706300	0.862687	4.249033e-64	-8.615850e-47
Msa0002060	Msa0706300	0.801998	6.910272e-49	-8.615850e-47
Msa0002690	Msa0706300	0.879427	1.257224e-69	-8.615850e-47
Msa0002700	Msa0706300	0.874377	7.082744e-68	-8.615850e-47
Msa0003340	Msa0706300	0.835464	1.652853e-56	-8.615850e-47
Msa0004180	Msa0706300	0.881906	1.625970e-70	-8.615850e-47
Msa0005190	Msa0706300	0.804467	2.130603e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706300	MtrunA17_Chr8g0385601	91.892	222	16	1	1	220	1	222	5.51e-153	423
Msa0706300	MtrunA17_Chr8g0385631	82.192	219	39	0	1	219	1	219	1.60e-128	361
Msa0706300	MtrunA17_Chr3g0131541	66.316	190	57	3	1	187	1	186	6.12e-90	263
Msa0706300	MtrunA17_Chr3g0131551	61.053	190	71	2	1	187	7	196	1.48e-82	245
Msa0706300	MtrunA17_Chr8g0385611	71.338	157	45	0	1	157	1	157	5.14e-76	226
Msa0706300	MtrunA17_Chr8g0385621	74.545	55	13	1	158	211	1	55	5.47e-21	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706300	AT3G23760.1	62.162	185	67	2	9	191	11	194	1.52e-83	247
Msa0706300	AT4G14100.1	55.556	198	87	1	9	206	8	204	7.11e-81	240

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Find 84 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGAGAAAATTTCCAC+TGG	0.563115	4_4:+79284040	Msa0706300:five_prime_UTR
AAAGTGACTCAATATGATGT+TGG	0.647948	4_4:+79284478	Msa0706300:CDS
AAATGTTTCTCAACCTTTAG+GGG	0.575986	4_4:-79284077	None:intergenic
AACAAGACTTATGGTACGAT+TGG	0.522229	4_4:+79284338	Msa0706300:CDS
AACATTACACAGAAAATTGT+CGG	0.472163	4_4:-79284554	None:intergenic
AACCCCAAATACACAACAGA+AGG	0.582352	4_4:+79284856	Msa0706300:CDS
AACTGTTCCGGCCACGGCGC+CGG	0.448851	4_4:-79284274	None:intergenic
AAGTTGAGAGATGAAGGAAG+AGG	0.569210	4_4:-79284231	None:intergenic
AATAGACAGGAGCCTGCCAA+TGG	0.552630	4_4:-79284812	None:intergenic
AATCATATGATATTGTTGGG+TGG	0.638483	4_4:-79284955	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGATGTCACTAAAAGGAA+TGG	+	chr4_4:79283992-79284011	Msa0706300:five_prime_UTR	30.0%
ATTATTTCACTGGAGAAAAC+AGG	+	chr4_4:79284024-79284043	Msa0706300:five_prime_UTR	30.0%
AAATGTTTCTCAACCTTTAG+GGG	-	chr4_4:79284080-79284099	None:intergenic	30.0%
ATGTTGAAATTTCGTCCATT+GGG	-	chr4_4:79284364-79284383	None:intergenic	30.0%
AATGTTGAAATTTCGTCCAT+TGG	-	chr4_4:79284365-79284384	None:intergenic	30.0%
TTCTCAAATATGACCTTGAA+TGG	+	chr4_4:79284404-79284423	Msa0706300:CDS	30.0%
AAAGTGACTCAATATGATGT+TGG	+	chr4_4:79284478-79284497	Msa0706300:CDS	30.0%
AATCATATGATATTGTTGGG+TGG	-	chr4_4:79284958-79284977	None:intergenic	30.0%
GGTTTATAATAAGCTTTGCT+TGG	+	chr4_4:79285047-79285066	Msa0706300:three_prime_UTR	30.0%
TATGATGTCACTAAAAGGAA+TGG	+	chr4_4:79283992-79284011	Msa0706300:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	79283975	79285137	79283975	ID=Msa0706300;Name=Msa0706300
chr4_4	mRNA	79283975	79285137	79283975	ID=Msa0706300-mRNA-1;Parent=Msa0706300;Name=Msa0706300-mRNA-1;_AED=0.34;_eAED=0.34;_QI=209\|1\|1\|1\|1\|1\|2\|184\|220
chr4_4	exon	79283975	79284652	79283975	ID=Msa0706300-mRNA-1:exon:25511;Parent=Msa0706300-mRNA-1
chr4_4	exon	79284760	79285137	79284760	ID=Msa0706300-mRNA-1:exon:25512;Parent=Msa0706300-mRNA-1
chr4_4	five_prime_UTR	79283975	79284183	79283975	ID=Msa0706300-mRNA-1:five_prime_utr;Parent=Msa0706300-mRNA-1
chr4_4	CDS	79284184	79284652	79284184	ID=Msa0706300-mRNA-1:cds;Parent=Msa0706300-mRNA-1
chr4_4	CDS	79284760	79284953	79284760	ID=Msa0706300-mRNA-1:cds;Parent=Msa0706300-mRNA-1
chr4_4	three_prime_UTR	79284954	79285137	79284954	ID=Msa0706300-mRNA-1:three_prime_utr;Parent=Msa0706300-mRNA-1

Gene Sequence

>Msa0706300

ATGGCCACTGCCACAGAAGAATGCATTTGTTTGTTTTTGTGTCTCTTCCTCTTCCTTCATCTCTCAACTTCGACCACAGAGGACCCAATTCCGGCGCCGTGGCCGGAACAGTTCCACTCAGTCCTACTCCTCAACAGAAGCGGCTCTCTTCGAAAACAAGACTTATGGTACGATTGGCCCAATGGACGAAATTTCAACATTATCCAATACCAGCTTGATGTTCTCAAATATGACCTTGAATGGAACAATGGCACCACCTTTCTCTACACTCTCGACCCTTTCGAGCACACTTGCAAAGTGACTCAATATGATGTTGGTATTCCACGACCCAATTGGCTTGATGGTGCTAATTATTTGGGTCAACAATATGCCGACAATTTTCTGTGTAATGTTTGGGAGAAAGTCGAATTTATTTGGTACTTTGAAGATGTTCTCACTAAAAGACCTGTCAAGTGGATCTTCTACGATGGAATGATTACTGATGTGATGACATTTGAGGTTGGAGCGGTACTAGATGATGCCCATTGGCAGGCTCCTGTCTATTGTTTTAGTAAGGCTGAGGCTGAACCCCAAATACACAACAGAAGGAGCAGTTTCTCATTAGATTTAGAAGCTGCTATTGTTGATGATTTTCGTTGGACACTAATGAGTGAGATGAGATAG

Protein sequence

>Msa0706300

MATATEECICLFLCLFLFLHLSTSTTEDPIPAPWPEQFHSVLLLNRSGSLRKQDLWYDWPNGRNFNIIQYQLDVLKYDLEWNNGTTFLYTLDPFEHTCKVTQYDVGIPRPNWLDGANYLGQQYADNFLCNVWEKVEFIWYFEDVLTKRPVKWIFYDGMITDVMTFEVGAVLDDAHWQAPVYCFSKAEAEPQIHNRRSSFSLDLEAAIVDDFRWTLMSEMR*