AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653690 MtrunA17_Chr4g0047741 96.373 193 7 0 1 193 1 193 2.82e-132 369
Msa0653690 MtrunA17_Chr3g0086951 39.429 175 93 4 25 191 18 187 1.79e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653690 AT1G74730.1 64.583 192 66 2 3 193 8 198 5.71e-66 201
Msa0653690 AT5G08050.1 40.800 125 66 2 72 193 39 158 7.50e-16 71.6

Find 60 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGCTGTTGGGTTGTTTGC+TGG 0.240768 4_3:-61849974 Msa0653690:CDS
TGTTGTTCTCGGCGGGTTGC+AGG 0.251096 4_3:-61849948 Msa0653690:CDS
CTCTTGGTGTTGGGGCTGTT+GGG 0.261115 4_3:-61849985 Msa0653690:CDS
GCTCTTGGTGTTGGGGCTGT+TGG 0.285475 4_3:-61849986 Msa0653690:CDS
TACTACTCTTGTTGTAGTTC+AGG 0.286824 4_3:-61850023 Msa0653690:CDS
TCGCTGCTGCTCTTGGTGTT+GGG 0.299413 4_3:-61849994 Msa0653690:CDS
AAAGACGGTGAAAGGTTTAT+TGG 0.327341 4_3:+61850485 None:intergenic
GTCGCTGCTGCTCTTGGTGT+TGG 0.327834 4_3:-61849995 Msa0653690:CDS
GATAAGGAAAAGATAGATAA+AGG 0.353630 4_3:-61850737 Msa0653690:five_prime_UTR
TGAACAAGTACAACGATAAC+TGG 0.365581 4_3:-61850357 Msa0653690:CDS
TCTGTCGCTTCCGACGCTTT+TGG 0.369555 4_3:-61850083 Msa0653690:CDS
TTTGCTGGATCTGTTGTTCT+CGG 0.382286 4_3:-61849959 Msa0653690:CDS
TTATCCAAAGCTGAAGAATT+CGG 0.394470 4_3:-61850217 Msa0653690:CDS
GACGCCGAATTCTTCAGCTT+TGG 0.394886 4_3:+61850213 None:intergenic
CGCAGTCTCTCCTTCCGTCT+TGG 0.401430 4_3:-61850110 Msa0653690:CDS
GCTGTTGTCGCTGCTGCTCT+TGG 0.417121 4_3:-61850001 Msa0653690:CDS
CTGGATCTGTTGTTCTCGGC+GGG 0.425288 4_3:-61849955 Msa0653690:CDS
CGCTGCTGCTCTTGGTGTTG+GGG 0.467142 4_3:-61849993 Msa0653690:CDS
AAAGGTTTATTGGAGGAAGT+AGG 0.473704 4_3:+61850495 None:intergenic
TCATCTCATTATATAATACA+AGG 0.475880 4_3:-61849807 Msa0653690:three_prime_UTR
AAGGTTTATTGGAGGAAGTA+GGG 0.490170 4_3:+61850496 None:intergenic
TGGAGAGCTGAGGTTGGAGC+AGG 0.490180 4_3:+61850570 None:intergenic
AACTGGAAGAAACAATGGTT+CGG 0.517807 4_3:-61850340 Msa0653690:CDS
ACCTTTCACCGTCTTTGCCA+TGG 0.518610 4_3:-61850478 Msa0653690:CDS
TTATATAATGAGATGAAGAA+AGG 0.522716 4_3:+61849814 None:intergenic
AAGAAACAATGGTTCGGAGC+AGG 0.525520 4_3:-61850334 Msa0653690:CDS
GACAGAGAAGCCAAGACGGA+AGG 0.533266 4_3:+61850100 None:intergenic
AGCGATAGTGACGGAGGGTG+CGG 0.535126 4_3:+61850523 None:intergenic
ACAAGAGTAGTAGAATCATC+AGG 0.544351 4_3:+61850034 None:intergenic
AAAAGATTACGAGATAGATA+AGG 0.544468 4_3:-61850753 None:intergenic
TTTGGGAGCCATGGCAAAGA+CGG 0.549608 4_3:+61850470 None:intergenic
GACGGTGAAAGGTTTATTGG+AGG 0.550094 4_3:+61850488 None:intergenic
GCCATGGCAAAGACGGTGAA+AGG 0.551635 4_3:+61850477 None:intergenic
AGGAAGTGAAGAAGTAGAAG+TGG 0.552394 4_3:-61850299 Msa0653690:CDS
CTCTCTTCAATCGAGAAACT+AGG 0.554038 4_3:-61850187 Msa0653690:CDS
TGTTCTCGGCGGGTTGCAGG+AGG 0.559794 4_3:-61849945 Msa0653690:CDS
GGAGGGTGCGGTGGTTAGTG+TGG 0.562291 4_3:+61850535 None:intergenic
TTTGGCTGCTGTTGCGACGG+TGG 0.563007 4_3:-61850065 Msa0653690:CDS
TAGTGTGGATGTGTTGAAGA+TGG 0.568146 4_3:+61850550 None:intergenic
CATCAATCAATCATCATCCA+TGG 0.577265 4_3:-61850598 Msa0653690:exon
AAGCGACAGAGAAGCCAAGA+CGG 0.581737 4_3:+61850096 None:intergenic
TGAAGATGGAGAGCTGAGGT+TGG 0.585555 4_3:+61850564 None:intergenic
GGTATGAGCAATACGACTGG+TGG 0.598192 4_3:-61850716 Msa0653690:five_prime_UTR
GGAAACGATCGCACATGAAG+AGG 0.605469 4_3:-61850694 Msa0653690:five_prime_UTR
GGTTGGAGCAGGAACAGCCA+TGG 0.616976 4_3:+61850581 None:intergenic
GCTGGATCTGTTGTTCTCGG+CGG 0.618325 4_3:-61849956 Msa0653690:CDS
ACGATAACTGGAAGAAACAA+TGG 0.622411 4_3:-61850345 Msa0653690:CDS
GTATGAGCAATACGACTGGT+GGG 0.622950 4_3:-61850715 Msa0653690:five_prime_UTR
CAAGACGGAAGGAGAGACTG+CGG 0.624177 4_3:+61850111 None:intergenic
GATAGTGACGGAGGGTGCGG+TGG 0.630396 4_3:+61850526 None:intergenic
AAAGGTATGAGCAATACGAC+TGG 0.634129 4_3:-61850719 Msa0653690:five_prime_UTR
TAGGGAATGAGCGATAGTGA+CGG 0.635156 4_3:+61850514 None:intergenic
GCAACAGCAGCCAAAAGCGT+CGG 0.640980 4_3:+61850073 None:intergenic
GGAATGAGCGATAGTGACGG+AGG 0.658654 4_3:+61850517 None:intergenic
GAATGAGCGATAGTGACGGA+GGG 0.663461 4_3:+61850518 None:intergenic
CATCTCATTATATAATACAA+GGG 0.670501 4_3:-61849806 Msa0653690:three_prime_UTR
GGAGCAGGAATATTCTACGA+AGG 0.698664 4_3:-61850319 Msa0653690:CDS
TGCAATCTCAACTGCCACGT+AGG 0.711060 4_3:+61850640 None:intergenic
GTGTTGAAGATGGAGAGCTG+AGG 0.722843 4_3:+61850560 None:intergenic
ACTCTATTGATTGTCCTACG+TGG 0.755869 4_3:-61850654 Msa0653690:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTGAATTTATGTTAT+TGG - chr4_3:61850114-61850133 Msa0653690:CDS 10.0%
!! TTTATTTGAATTTATGTTAT+TGG - chr4_3:61850114-61850133 Msa0653690:CDS 10.0%
!! TGAATTTATGTTATTGGATA+TGG - chr4_3:61850120-61850139 Msa0653690:CDS 20.0%
!! TTATATAATGAGATGAAGAA+AGG + chr4_3:61850693-61850712 None:intergenic 20.0%
!! TCATCTCATTATATAATACA+AGG - chr4_3:61850697-61850716 Msa0653690:five_prime_UTR 20.0%
!! CATCTCATTATATAATACAA+GGG - chr4_3:61850698-61850717 Msa0653690:five_prime_UTR 20.0%
!! TGAATTTATGTTATTGGATA+TGG - chr4_3:61850120-61850139 Msa0653690:CDS 20.0%
!! TTATATAATGAGATGAAGAA+AGG + chr4_3:61850693-61850712 None:intergenic 20.0%
!! TCATCTCATTATATAATACA+AGG - chr4_3:61850697-61850716 Msa0653690:five_prime_UTR 20.0%
!! CATCTCATTATATAATACAA+GGG - chr4_3:61850698-61850717 Msa0653690:five_prime_UTR 20.0%
! GATAAGGAAAAGATAGATAA+AGG - chr4_3:61849767-61849786 Msa0653690:three_prime_UTR 25.0%
! AAATAATGACGAAAATGATG+AGG + chr4_3:61850082-61850101 None:intergenic 25.0%
! TTTATGTTATTGGATATGGA+AGG - chr4_3:61850124-61850143 Msa0653690:CDS 25.0%
! GATAAGGAAAAGATAGATAA+AGG - chr4_3:61849767-61849786 Msa0653690:three_prime_UTR 25.0%
! AAATAATGACGAAAATGATG+AGG + chr4_3:61850082-61850101 None:intergenic 25.0%
! TTTATGTTATTGGATATGGA+AGG - chr4_3:61850124-61850143 Msa0653690:CDS 25.0%
! TGTGTATGTACCTTCTTTTT+GGG + chr4_3:61850054-61850073 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG + chr4_3:61850055-61850074 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG - chr4_3:61850287-61850306 Msa0653690:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG - chr4_3:61850331-61850350 Msa0653690:CDS 30.0%
AATTACAACAAAAACAACCG+CGG + chr4_3:61850613-61850632 None:intergenic 30.0%
! TGTGTATGTACCTTCTTTTT+GGG + chr4_3:61850054-61850073 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG + chr4_3:61850055-61850074 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG - chr4_3:61850287-61850306 Msa0653690:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG - chr4_3:61850331-61850350 Msa0653690:CDS 30.0%
AATTACAACAAAAACAACCG+CGG + chr4_3:61850613-61850632 None:intergenic 30.0%
CATCAATCAATCATCATCCA+TGG - chr4_3:61849906-61849925 Msa0653690:three_prime_UTR 35.0%
AAGGTTTATTGGAGGAAGTA+GGG + chr4_3:61850011-61850030 None:intergenic 35.0%
AAAGGTTTATTGGAGGAAGT+AGG + chr4_3:61850012-61850031 None:intergenic 35.0%
AAAGACGGTGAAAGGTTTAT+TGG + chr4_3:61850022-61850041 None:intergenic 35.0%
TGAACAAGTACAACGATAAC+TGG - chr4_3:61850147-61850166 Msa0653690:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG - chr4_3:61850159-61850178 Msa0653690:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG - chr4_3:61850164-61850183 Msa0653690:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG - chr4_3:61850260-61850279 Msa0653690:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG - chr4_3:61850334-61850353 Msa0653690:CDS 35.0%
ACAAGAGTAGTAGAATCATC+AGG + chr4_3:61850473-61850492 None:intergenic 35.0%
! TACTACTCTTGTTGTAGTTC+AGG - chr4_3:61850481-61850500 Msa0653690:CDS 35.0%
!! AGTACACATGTTTTTAACCG+CGG - chr4_3:61850593-61850612 Msa0653690:exon 35.0%
CATCAATCAATCATCATCCA+TGG - chr4_3:61849906-61849925 Msa0653690:three_prime_UTR 35.0%
AAGGTTTATTGGAGGAAGTA+GGG + chr4_3:61850011-61850030 None:intergenic 35.0%
AAAGGTTTATTGGAGGAAGT+AGG + chr4_3:61850012-61850031 None:intergenic 35.0%
AAAGACGGTGAAAGGTTTAT+TGG + chr4_3:61850022-61850041 None:intergenic 35.0%
TGAACAAGTACAACGATAAC+TGG - chr4_3:61850147-61850166 Msa0653690:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG - chr4_3:61850159-61850178 Msa0653690:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG - chr4_3:61850164-61850183 Msa0653690:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG - chr4_3:61850260-61850279 Msa0653690:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG - chr4_3:61850334-61850353 Msa0653690:CDS 35.0%
ACAAGAGTAGTAGAATCATC+AGG + chr4_3:61850473-61850492 None:intergenic 35.0%
! TACTACTCTTGTTGTAGTTC+AGG - chr4_3:61850481-61850500 Msa0653690:CDS 35.0%
!! AGTACACATGTTTTTAACCG+CGG - chr4_3:61850593-61850612 Msa0653690:exon 35.0%
! AAAGGTATGAGCAATACGAC+TGG - chr4_3:61849785-61849804 Msa0653690:three_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG - chr4_3:61849850-61849869 Msa0653690:three_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG + chr4_3:61849957-61849976 None:intergenic 40.0%
AGGAAGTGAAGAAGTAGAAG+TGG - chr4_3:61850205-61850224 Msa0653690:CDS 40.0%
CTCTCTTCAATCGAGAAACT+AGG - chr4_3:61850317-61850336 Msa0653690:CDS 40.0%
!!! TTTTCTAAGGCGGAAGAACT+TGG - chr4_3:61850344-61850363 Msa0653690:CDS 40.0%
TTTGCTGGATCTGTTGTTCT+CGG - chr4_3:61850545-61850564 Msa0653690:CDS 40.0%
! AAAGGTATGAGCAATACGAC+TGG - chr4_3:61849785-61849804 Msa0653690:three_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG - chr4_3:61849850-61849869 Msa0653690:three_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG + chr4_3:61849957-61849976 None:intergenic 40.0%
AGGAAGTGAAGAAGTAGAAG+TGG - chr4_3:61850205-61850224 Msa0653690:CDS 40.0%
CTCTCTTCAATCGAGAAACT+AGG - chr4_3:61850317-61850336 Msa0653690:CDS 40.0%
!!! TTTTCTAAGGCGGAAGAACT+TGG - chr4_3:61850344-61850363 Msa0653690:CDS 40.0%
TTTGCTGGATCTGTTGTTCT+CGG - chr4_3:61850545-61850564 Msa0653690:CDS 40.0%
GTATGAGCAATACGACTGGT+GGG - chr4_3:61849789-61849808 Msa0653690:three_prime_UTR 45.0%
TAGGGAATGAGCGATAGTGA+CGG + chr4_3:61849993-61850012 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG + chr4_3:61850019-61850038 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG + chr4_3:61850046-61850065 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG - chr4_3:61850170-61850189 Msa0653690:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG - chr4_3:61850185-61850204 Msa0653690:CDS 45.0%
GTATGAGCAATACGACTGGT+GGG - chr4_3:61849789-61849808 Msa0653690:three_prime_UTR 45.0%
TAGGGAATGAGCGATAGTGA+CGG + chr4_3:61849993-61850012 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG + chr4_3:61850019-61850038 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG + chr4_3:61850046-61850065 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG - chr4_3:61850170-61850189 Msa0653690:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG - chr4_3:61850185-61850204 Msa0653690:CDS 45.0%
GGTATGAGCAATACGACTGG+TGG - chr4_3:61849788-61849807 Msa0653690:three_prime_UTR 50.0%
GGAAACGATCGCACATGAAG+AGG - chr4_3:61849810-61849829 Msa0653690:three_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG + chr4_3:61849867-61849886 None:intergenic 50.0%
TGAAGATGGAGAGCTGAGGT+TGG + chr4_3:61849943-61849962 None:intergenic 50.0%
GTGTTGAAGATGGAGAGCTG+AGG + chr4_3:61849947-61849966 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG + chr4_3:61849989-61850008 None:intergenic 50.0%
ACCTTTCACCGTCTTTGCCA+TGG - chr4_3:61850026-61850045 Msa0653690:CDS 50.0%
TTTGGGAGCCATGGCAAAGA+CGG + chr4_3:61850037-61850056 None:intergenic 50.0%
TGCCATGGCTCCCAAAAAGA+AGG - chr4_3:61850041-61850060 Msa0653690:CDS 50.0%
GACGCCGAATTCTTCAGCTT+TGG + chr4_3:61850294-61850313 None:intergenic 50.0%
AAGCGACAGAGAAGCCAAGA+CGG + chr4_3:61850411-61850430 None:intergenic 50.0%
GGTATGAGCAATACGACTGG+TGG - chr4_3:61849788-61849807 Msa0653690:three_prime_UTR 50.0%
GGAAACGATCGCACATGAAG+AGG - chr4_3:61849810-61849829 Msa0653690:three_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG + chr4_3:61849867-61849886 None:intergenic 50.0%
TGAAGATGGAGAGCTGAGGT+TGG + chr4_3:61849943-61849962 None:intergenic 50.0%
GTGTTGAAGATGGAGAGCTG+AGG + chr4_3:61849947-61849966 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG + chr4_3:61849989-61850008 None:intergenic 50.0%
ACCTTTCACCGTCTTTGCCA+TGG - chr4_3:61850026-61850045 Msa0653690:CDS 50.0%
TTTGGGAGCCATGGCAAAGA+CGG + chr4_3:61850037-61850056 None:intergenic 50.0%
TGCCATGGCTCCCAAAAAGA+AGG - chr4_3:61850041-61850060 Msa0653690:CDS 50.0%
GACGCCGAATTCTTCAGCTT+TGG + chr4_3:61850294-61850313 None:intergenic 50.0%
AAGCGACAGAGAAGCCAAGA+CGG + chr4_3:61850411-61850430 None:intergenic 50.0%
GGAATGAGCGATAGTGACGG+AGG + chr4_3:61849990-61850009 None:intergenic 55.0%
GCCATGGCAAAGACGGTGAA+AGG + chr4_3:61850030-61850049 None:intergenic 55.0%
CAAGACGGAAGGAGAGACTG+CGG + chr4_3:61850396-61850415 None:intergenic 55.0%
GACAGAGAAGCCAAGACGGA+AGG + chr4_3:61850407-61850426 None:intergenic 55.0%
!! TCTGTCGCTTCCGACGCTTT+TGG - chr4_3:61850421-61850440 Msa0653690:intron 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG + chr4_3:61850434-61850453 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG - chr4_3:61850436-61850455 Msa0653690:intron 55.0%
!! TCGCTGCTGCTCTTGGTGTT+GGG - chr4_3:61850510-61850529 Msa0653690:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG - chr4_3:61850519-61850538 Msa0653690:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG - chr4_3:61850548-61850567 Msa0653690:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG - chr4_3:61850549-61850568 Msa0653690:CDS 55.0%
GGAATGAGCGATAGTGACGG+AGG + chr4_3:61849990-61850009 None:intergenic 55.0%
GCCATGGCAAAGACGGTGAA+AGG + chr4_3:61850030-61850049 None:intergenic 55.0%
CAAGACGGAAGGAGAGACTG+CGG + chr4_3:61850396-61850415 None:intergenic 55.0%
GACAGAGAAGCCAAGACGGA+AGG + chr4_3:61850407-61850426 None:intergenic 55.0%
!! TCTGTCGCTTCCGACGCTTT+TGG - chr4_3:61850421-61850440 Msa0653690:intron 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG + chr4_3:61850434-61850453 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG - chr4_3:61850436-61850455 Msa0653690:intron 55.0%
!! TCGCTGCTGCTCTTGGTGTT+GGG - chr4_3:61850510-61850529 Msa0653690:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG - chr4_3:61850519-61850538 Msa0653690:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG - chr4_3:61850548-61850567 Msa0653690:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG - chr4_3:61850549-61850568 Msa0653690:CDS 55.0%
GGTTGGAGCAGGAACAGCCA+TGG + chr4_3:61849926-61849945 None:intergenic 60.0%
TGGAGAGCTGAGGTTGGAGC+AGG + chr4_3:61849937-61849956 None:intergenic 60.0%
! AGCGATAGTGACGGAGGGTG+CGG + chr4_3:61849984-61850003 None:intergenic 60.0%
CGCAGTCTCTCCTTCCGTCT+TGG - chr4_3:61850394-61850413 Msa0653690:intron 60.0%
TTTGGCTGCTGTTGCGACGG+TGG - chr4_3:61850439-61850458 Msa0653690:intron 60.0%
GCTGTTGTCGCTGCTGCTCT+TGG - chr4_3:61850503-61850522 Msa0653690:CDS 60.0%
! GTCGCTGCTGCTCTTGGTGT+TGG - chr4_3:61850509-61850528 Msa0653690:CDS 60.0%
!! CGCTGCTGCTCTTGGTGTTG+GGG - chr4_3:61850511-61850530 Msa0653690:CDS 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG - chr4_3:61850518-61850537 Msa0653690:CDS 60.0%
! GGGGCTGTTGGGTTGTTTGC+TGG - chr4_3:61850530-61850549 Msa0653690:CDS 60.0%
!! TGTTGTTCTCGGCGGGTTGC+AGG - chr4_3:61850556-61850575 Msa0653690:CDS 60.0%
GGTTGGAGCAGGAACAGCCA+TGG + chr4_3:61849926-61849945 None:intergenic 60.0%
TGGAGAGCTGAGGTTGGAGC+AGG + chr4_3:61849937-61849956 None:intergenic 60.0%
! AGCGATAGTGACGGAGGGTG+CGG + chr4_3:61849984-61850003 None:intergenic 60.0%
CGCAGTCTCTCCTTCCGTCT+TGG - chr4_3:61850394-61850413 Msa0653690:intron 60.0%
TTTGGCTGCTGTTGCGACGG+TGG - chr4_3:61850439-61850458 Msa0653690:intron 60.0%
GCTGTTGTCGCTGCTGCTCT+TGG - chr4_3:61850503-61850522 Msa0653690:CDS 60.0%
! GTCGCTGCTGCTCTTGGTGT+TGG - chr4_3:61850509-61850528 Msa0653690:CDS 60.0%
!! CGCTGCTGCTCTTGGTGTTG+GGG - chr4_3:61850511-61850530 Msa0653690:CDS 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG - chr4_3:61850518-61850537 Msa0653690:CDS 60.0%
! GGGGCTGTTGGGTTGTTTGC+TGG - chr4_3:61850530-61850549 Msa0653690:CDS 60.0%
!! TGTTGTTCTCGGCGGGTTGC+AGG - chr4_3:61850556-61850575 Msa0653690:CDS 60.0%
! GGAGGGTGCGGTGGTTAGTG+TGG + chr4_3:61849972-61849991 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG + chr4_3:61849981-61850000 None:intergenic 65.0%
!! TGTTCTCGGCGGGTTGCAGG+AGG - chr4_3:61850559-61850578 Msa0653690:CDS 65.0%
! GGAGGGTGCGGTGGTTAGTG+TGG + chr4_3:61849972-61849991 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG + chr4_3:61849981-61850000 None:intergenic 65.0%
!! TGTTCTCGGCGGGTTGCAGG+AGG - chr4_3:61850559-61850578 Msa0653690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 61849766 61850760 61849766 ID=Msa0653690;Name=Msa0653690
chr4_3 mRNA 61849766 61850760 61849766 ID=Msa0653690-mRNA-1;Parent=Msa0653690;Name=Msa0653690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=159|1|1|1|1|1|2|171|193
chr4_3 exon 61849766 61850380 61849766 ID=Msa0653690-mRNA-1:exon:17023;Parent=Msa0653690-mRNA-1
chr4_3 exon 61850464 61850760 61850464 ID=Msa0653690-mRNA-1:exon:17022;Parent=Msa0653690-mRNA-1
chr4_3 five_prime_UTR 61850602 61850760 61850602 ID=Msa0653690-mRNA-1:five_prime_utr;Parent=Msa0653690-mRNA-1
chr4_3 CDS 61850464 61850601 61850464 ID=Msa0653690-mRNA-1:cds;Parent=Msa0653690-mRNA-1
chr4_3 CDS 61849937 61850380 61849937 ID=Msa0653690-mRNA-1:cds;Parent=Msa0653690-mRNA-1
chr4_3 three_prime_UTR 61849766 61849936 61849766 ID=Msa0653690-mRNA-1:three_prime_utr;Parent=Msa0653690-mRNA-1
Gene Sequence

>Msa0653690

ATGGCTGTTCCTGCTCCAACCTCAGCTCTCCATCTTCAACACATCCACACTAACCACCGCACCCTCCGTCACTATCGCTCATTCCCTACTTCCTCCAATAAACCTTTCACCGTCTTTGCCATGGCTCCCAAAAAGAAGGTGAACAAGTACAACGATAACTGGAAGAAACAATGGTTCGGAGCAGGAATATTCTACGAAGGAAGTGAAGAAGTAGAAGTGGACGTATTCAAGAAACTCGAGAAACGCAAAGTTTTAAGCAACGTTGAAAAAGCAGGATTATTATCCAAAGCTGAAGAATTCGGCGTCACGCTCTCTTCAATCGAGAAACTAGGACTTTTTTCTAAGGCGGAAGAACTTGGCTTACTCAGCTTATTAGAGAAACTCGCCGCAGTCTCTCCTTCCGTCTTGGCTTCTCTGTCGCTTCCGACGCTTTTGGCTGCTGTTGCGACGGTGGTTTTTGTTCCTGATGATTCTACTACTCTTGTTGTAGTTCAGGCTGTTGTCGCTGCTGCTCTTGGTGTTGGGGCTGTTGGGTTGTTTGCTGGATCTGTTGTTCTCGGCGGGTTGCAGGAGGCTGATTGA

Protein sequence

>Msa0653690

MAVPAPTSALHLQHIHTNHRTLRHYRSFPTSSNKPFTVFAMAPKKKVNKYNDNWKKQWFGAGIFYEGSEEVEVDVFKKLEKRKVLSNVEKAGLLSKAEEFGVTLSSIEKLGLFSKAEELGLLSLLEKLAAVSPSVLASLSLPTLLAAVATVVFVPDDSTTLVVVQAVVAAALGVGAVGLFAGSVVLGGLQEAD*