AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437790 MtrunA17_Chr1g0213301 92.737 179 5 3 1 179 1 171 4.30e-116 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437790 AT2G34860.2 58.382 173 64 3 15 179 14 186 3.66e-63 193
Msa0437790 AT2G34860.1 58.382 173 64 3 15 179 14 186 3.66e-63 193

Find 68 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTGCTAATGCTGATTTC+TGG 0.190781 3_3:+1816240 Msa0437790:three_prime_UTR
CGCCTGGAAACAACATTTAC+TGG 0.235547 3_3:-1815471 None:intergenic
ACATACCTTCTTCTAAGAAT+TGG 0.272269 3_3:-1815942 None:intergenic
CCAAGCAAAATTTAGAGTTC+TGG 0.281948 3_3:-1816405 None:intergenic
CTTGTCTGCCCTGTTTGTTT+AGG 0.322236 3_3:+1815833 Msa0437790:CDS
ACTGAATGTCCTAATTGTTA+TGG 0.323214 3_3:+1815800 Msa0437790:CDS
CGGAATGGATTGCAATTTGC+AGG 0.323737 3_3:+1815220 Msa0437790:exon
CAGTCACTGGCTTAATTAAC+TGG 0.333554 3_3:-1816283 None:intergenic
CTGAGAAGACCTTTATTGTT+TGG 0.336791 3_3:-1815866 None:intergenic
TTTCCTCGACCATAACAATT+AGG 0.345884 3_3:-1815809 None:intergenic
TGCCCTGTTTGTTTAGGAAC+TGG 0.352275 3_3:+1815839 Msa0437790:CDS
GGTTACTAGTTAGCACCTAT+TGG 0.353176 3_3:+1816426 Msa0437790:three_prime_UTR
CTGCTTGATAAGATGTATAA+TGG 0.353896 3_3:+1815908 Msa0437790:CDS
GAAAATGGAAAGCTCTTAAC+AGG 0.369385 3_3:+1815750 Msa0437790:CDS
TCAAGCAGTTTCTTTGCATC+AGG 0.377519 3_3:-1815893 None:intergenic
CATACCTTCTTCTAAGAATT+GGG 0.381922 3_3:-1815941 None:intergenic
TCCCAGTAAATGTTGTTTCC+AGG 0.390370 3_3:+1815469 Msa0437790:CDS
TGTGTGGTGGTACAGGAAAA+TGG 0.392406 3_3:+1815735 Msa0437790:CDS
ACTGGTGTGCCAAACAATAA+AGG 0.405844 3_3:+1815857 Msa0437790:CDS
ACACCAGTTCCTAAACAAAC+AGG 0.409014 3_3:-1815842 None:intergenic
TACTTGGTAACTATCTATAT+AGG 0.419252 3_3:-1816583 None:intergenic
ATCACTCTCTTCTTCTCCAT+CGG 0.420712 3_3:+1815200 Msa0437790:five_prime_UTR
ACAAAATATTGAAATCCAAT+AGG 0.425468 3_3:-1816441 None:intergenic
TAAATGACTTTCAAAATGTC+AGG 0.443125 3_3:+1816520 Msa0437790:three_prime_UTR
ATCCGCTTGACACATCTTTG+AGG 0.450787 3_3:-1816652 None:intergenic
CGTGGAGAGCACACGACCTA+TGG 0.452594 3_3:+1815131 None:intergenic
CCAGTGACTGCAATGGTAAT+CGG 0.455462 3_3:+1816296 Msa0437790:three_prime_UTR
CCGATTACCATTGCAGTCAC+TGG 0.455630 3_3:-1816296 None:intergenic
TGAACATATACATATTTACT+TGG 0.456697 3_3:-1816599 None:intergenic
ACTTCCCAATTCTTAGAAGA+AGG 0.466180 3_3:+1815937 Msa0437790:exon
AGTTGGAAGAGGAGGAAGAG+TGG 0.470888 3_3:-1815346 None:intergenic
ACCGCTCTTGATAAACCTCC+AGG 0.498198 3_3:+1815555 Msa0437790:CDS
CCACCACAATTTCTGCAACC+TGG 0.498937 3_3:-1815573 None:intergenic
CTAGCAAGTATTGCTATGTA+AGG 0.500666 3_3:+1816559 Msa0437790:three_prime_UTR
GTTTGTTTGATAAAAGAAGT+TGG 0.500841 3_3:-1815269 None:intergenic
TCCACTCTTCCTCAAAATCA+AGG 0.504399 3_3:+1815320 Msa0437790:CDS
TTGTGAGCACAACTGAATTG+AGG 0.504650 3_3:+1816219 Msa0437790:three_prime_UTR
CAAACAATAAAGGTCTTCTC+AGG 0.512552 3_3:+1815867 Msa0437790:CDS
GGTGATATGTGTGGTGGTAC+AGG 0.517437 3_3:+1815728 Msa0437790:intron
CTGTGTATTCTAAGCTAGCT+AGG 0.523119 3_3:-1816321 None:intergenic
TGCAGAAATTGTGGTGGAAG+TGG 0.524731 3_3:+1815579 Msa0437790:CDS
TCTTCTAAGAATTGGGAAGT+AGG 0.526104 3_3:-1815934 None:intergenic
TCTCTTCTTCTCCATCGGAA+TGG 0.530978 3_3:+1815205 Msa0437790:exon
ACATACCTTGGAGTTGGAAG+AGG 0.537745 3_3:-1815357 None:intergenic
TGATAAAAGAAGTTGGAGGA+AGG 0.545348 3_3:-1815262 None:intergenic
GCCTGGAAACAACATTTACT+GGG 0.549950 3_3:-1815470 None:intergenic
TGTCCTAATTGTTATGGTCG+AGG 0.554383 3_3:+1815806 Msa0437790:CDS
CCTCCAGGTTGCAGAAATTG+TGG 0.558014 3_3:+1815570 Msa0437790:CDS
ATACATACATACCTTGGAGT+TGG 0.560487 3_3:-1815363 None:intergenic
AGAGCACACGACCTATGGAT+TGG 0.561400 3_3:+1815136 Msa0437790:five_prime_UTR
ACATTTAAGACATTGACGCC+TGG 0.572047 3_3:-1815487 None:intergenic
TTAACTGGTGGAGAAAATTG+TGG 0.575727 3_3:-1816268 None:intergenic
TACCTTGGAGTTGGAAGAGG+AGG 0.582188 3_3:-1815354 None:intergenic
AAATATCAACTCCAATCCAT+AGG 0.583319 3_3:-1815147 None:intergenic
TTCCTCCTCTTCCAACTCCA+AGG 0.584619 3_3:+1815352 Msa0437790:CDS
CAAATTGCAATCCATTCCGA+TGG 0.595484 3_3:-1815216 None:intergenic
ACCTGGAGGTTTATCAAGAG+CGG 0.598366 3_3:-1815556 None:intergenic
ATCCTCAAAGATGTGTCAAG+CGG 0.606936 3_3:+1816650 Msa0437790:three_prime_UTR
CATTTAGGTGATATGTGTGG+TGG 0.616105 3_3:+1815722 Msa0437790:intron
AATTAAGCCAGTGACTGCAA+TGG 0.621433 3_3:+1816289 Msa0437790:three_prime_UTR
ACAATAAAGGTCTTCTCAGG+AGG 0.622506 3_3:+1815870 Msa0437790:CDS
TCACTGGCTTAATTAACTGG+TGG 0.630791 3_3:-1816280 None:intergenic
CCACAATTTCTGCAACCTGG+AGG 0.630868 3_3:-1815570 None:intergenic
CCAGGTTGCAGAAATTGTGG+TGG 0.631837 3_3:+1815573 Msa0437790:CDS
TTTCATTTAGGTGATATGTG+TGG 0.652582 3_3:+1815719 Msa0437790:intron
CACCAGTTCCTAAACAAACA+GGG 0.654127 3_3:-1815841 None:intergenic
TGTTTGATAAAAGAAGTTGG+AGG 0.669703 3_3:-1815266 None:intergenic
GAAGTTGGAGGAAGGCATCG+AGG 0.706960 3_3:-1815254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr3_3:1816358-1816377 Msa0437790:intron 0.0%
!! TATATATATATATATATATA+TGG + chr3_3:1816358-1816377 Msa0437790:intron 0.0%
!! TTTGTTGCATTAATTAAAAA+TGG - chr3_3:1815525-1815544 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG + chr3_3:1816047-1816066 Msa0437790:intron 15.0%
!! AAGCTAAATAAAATATTGTT+GGG + chr3_3:1816048-1816067 Msa0437790:intron 15.0%
!! ATATATATATATATATGGTC+TGG + chr3_3:1816375-1816394 Msa0437790:intron 15.0%
!! TTTGTTGCATTAATTAAAAA+TGG - chr3_3:1815525-1815544 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG + chr3_3:1816047-1816066 Msa0437790:intron 15.0%
!! AAGCTAAATAAAATATTGTT+GGG + chr3_3:1816048-1816067 Msa0437790:intron 15.0%
!! ATATATATATATATATGGTC+TGG + chr3_3:1816375-1816394 Msa0437790:intron 15.0%
!!! TACTACTTTTGATTTCATTT+AGG + chr3_3:1815707-1815726 Msa0437790:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG + chr3_3:1816052-1816071 Msa0437790:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG + chr3_3:1816053-1816072 Msa0437790:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG - chr3_3:1816444-1816463 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG - chr3_3:1816602-1816621 None:intergenic 20.0%
!!! TACTACTTTTGATTTCATTT+AGG + chr3_3:1815707-1815726 Msa0437790:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG + chr3_3:1816052-1816071 Msa0437790:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG + chr3_3:1816053-1816072 Msa0437790:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG - chr3_3:1816444-1816463 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG - chr3_3:1816602-1816621 None:intergenic 20.0%
! GTTTGTTTGATAAAAGAAGT+TGG - chr3_3:1815272-1815291 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG + chr3_3:1815272-1815291 Msa0437790:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + chr3_3:1815425-1815444 Msa0437790:intron 25.0%
! ATGTATACTTTCTTCCTTAT+AGG + chr3_3:1815961-1815980 Msa0437790:intron 25.0%
! TATATATATATATGGTCTGG+AGG + chr3_3:1816378-1816397 Msa0437790:intron 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG - chr3_3:1816501-1816520 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG + chr3_3:1816520-1816539 Msa0437790:three_prime_UTR 25.0%
!! TACTTGGTAACTATCTATAT+AGG - chr3_3:1816586-1816605 None:intergenic 25.0%
! GTTTGTTTGATAAAAGAAGT+TGG - chr3_3:1815272-1815291 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG + chr3_3:1815272-1815291 Msa0437790:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + chr3_3:1815425-1815444 Msa0437790:intron 25.0%
! ATGTATACTTTCTTCCTTAT+AGG + chr3_3:1815961-1815980 Msa0437790:intron 25.0%
! TATATATATATATGGTCTGG+AGG + chr3_3:1816378-1816397 Msa0437790:intron 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG - chr3_3:1816501-1816520 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG + chr3_3:1816520-1816539 Msa0437790:three_prime_UTR 25.0%
!! TACTTGGTAACTATCTATAT+AGG - chr3_3:1816586-1816605 None:intergenic 25.0%
AAATATCAACTCCAATCCAT+AGG - chr3_3:1815150-1815169 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG - chr3_3:1815269-1815288 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG + chr3_3:1815276-1815295 Msa0437790:CDS 30.0%
ACATACATACATACATACCT+TGG - chr3_3:1815372-1815391 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG - chr3_3:1815622-1815641 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + chr3_3:1815719-1815738 Msa0437790:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + chr3_3:1815800-1815819 Msa0437790:CDS 30.0%
CTGCTTGATAAGATGTATAA+TGG + chr3_3:1815908-1815927 Msa0437790:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG - chr3_3:1815944-1815963 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG - chr3_3:1815945-1815964 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG - chr3_3:1816010-1816029 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG + chr3_3:1816009-1816028 Msa0437790:intron 30.0%
! TAAAGCACTTGCTTTACTTA+TGG + chr3_3:1816078-1816097 Msa0437790:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG + chr3_3:1816088-1816107 Msa0437790:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG - chr3_3:1816119-1816138 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG - chr3_3:1816132-1816151 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG - chr3_3:1816177-1816196 None:intergenic 30.0%
AAATATCAACTCCAATCCAT+AGG - chr3_3:1815150-1815169 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG - chr3_3:1815269-1815288 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG + chr3_3:1815276-1815295 Msa0437790:CDS 30.0%
ACATACATACATACATACCT+TGG - chr3_3:1815372-1815391 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG - chr3_3:1815622-1815641 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + chr3_3:1815719-1815738 Msa0437790:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + chr3_3:1815800-1815819 Msa0437790:CDS 30.0%
CTGCTTGATAAGATGTATAA+TGG + chr3_3:1815908-1815927 Msa0437790:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG - chr3_3:1815944-1815963 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG - chr3_3:1815945-1815964 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG - chr3_3:1816010-1816029 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG + chr3_3:1816009-1816028 Msa0437790:intron 30.0%
! TAAAGCACTTGCTTTACTTA+TGG + chr3_3:1816078-1816097 Msa0437790:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG + chr3_3:1816088-1816107 Msa0437790:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG - chr3_3:1816119-1816138 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG - chr3_3:1816132-1816151 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG - chr3_3:1816177-1816196 None:intergenic 30.0%
TGATAAAAGAAGTTGGAGGA+AGG - chr3_3:1815265-1815284 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG - chr3_3:1815366-1815385 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG + chr3_3:1815750-1815769 Msa0437790:CDS 35.0%
TTTCCTCGACCATAACAATT+AGG - chr3_3:1815812-1815831 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG - chr3_3:1815869-1815888 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG + chr3_3:1815867-1815886 Msa0437790:CDS 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG - chr3_3:1815937-1815956 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG + chr3_3:1815937-1815956 Msa0437790:exon 35.0%
ACTTAATGGAGTAGTATCAG+GGG - chr3_3:1816118-1816137 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG - chr3_3:1816120-1816139 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG - chr3_3:1816271-1816290 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG - chr3_3:1816408-1816427 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG + chr3_3:1816405-1816424 Msa0437790:three_prime_UTR 35.0%
! CTAGCAAGTATTGCTATGTA+AGG + chr3_3:1816559-1816578 Msa0437790:three_prime_UTR 35.0%
TGATAAAAGAAGTTGGAGGA+AGG - chr3_3:1815265-1815284 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG - chr3_3:1815366-1815385 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG + chr3_3:1815750-1815769 Msa0437790:CDS 35.0%
TTTCCTCGACCATAACAATT+AGG - chr3_3:1815812-1815831 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG - chr3_3:1815869-1815888 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG + chr3_3:1815867-1815886 Msa0437790:CDS 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG - chr3_3:1815937-1815956 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG + chr3_3:1815937-1815956 Msa0437790:exon 35.0%
ACTTAATGGAGTAGTATCAG+GGG - chr3_3:1816118-1816137 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG - chr3_3:1816120-1816139 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG - chr3_3:1816271-1816290 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG - chr3_3:1816408-1816427 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG + chr3_3:1816405-1816424 Msa0437790:three_prime_UTR 35.0%
! CTAGCAAGTATTGCTATGTA+AGG + chr3_3:1816559-1816578 Msa0437790:three_prime_UTR 35.0%
ATCACTCTCTTCTTCTCCAT+CGG + chr3_3:1815200-1815219 Msa0437790:five_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG - chr3_3:1815219-1815238 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG + chr3_3:1815320-1815339 Msa0437790:CDS 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - chr3_3:1815324-1815343 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG + chr3_3:1815446-1815465 Msa0437790:intron 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG + chr3_3:1815469-1815488 Msa0437790:CDS 40.0%
GCCTGGAAACAACATTTACT+GGG - chr3_3:1815473-1815492 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG - chr3_3:1815490-1815509 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG + chr3_3:1815722-1815741 Msa0437790:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG + chr3_3:1815806-1815825 Msa0437790:CDS 40.0%
CACCAGTTCCTAAACAAACA+GGG - chr3_3:1815844-1815863 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG - chr3_3:1815845-1815864 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + chr3_3:1815857-1815876 Msa0437790:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG + chr3_3:1815870-1815889 Msa0437790:CDS 40.0%
TCAAGCAGTTTCTTTGCATC+AGG - chr3_3:1815896-1815915 None:intergenic 40.0%
TTGTGAGCACAACTGAATTG+AGG + chr3_3:1816219-1816238 Msa0437790:three_prime_UTR 40.0%
!! TCACTGGCTTAATTAACTGG+TGG - chr3_3:1816283-1816302 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG - chr3_3:1816286-1816305 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG + chr3_3:1816289-1816308 Msa0437790:three_prime_UTR 40.0%
CTGTGTATTCTAAGCTAGCT+AGG - chr3_3:1816324-1816343 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG + chr3_3:1816426-1816445 Msa0437790:three_prime_UTR 40.0%
ATCCTCAAAGATGTGTCAAG+CGG + chr3_3:1816650-1816669 Msa0437790:three_prime_UTR 40.0%
ATCACTCTCTTCTTCTCCAT+CGG + chr3_3:1815200-1815219 Msa0437790:five_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG - chr3_3:1815219-1815238 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG + chr3_3:1815320-1815339 Msa0437790:CDS 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - chr3_3:1815324-1815343 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG + chr3_3:1815446-1815465 Msa0437790:intron 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG + chr3_3:1815469-1815488 Msa0437790:CDS 40.0%
GCCTGGAAACAACATTTACT+GGG - chr3_3:1815473-1815492 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG - chr3_3:1815490-1815509 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG + chr3_3:1815722-1815741 Msa0437790:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG + chr3_3:1815806-1815825 Msa0437790:CDS 40.0%
CACCAGTTCCTAAACAAACA+GGG - chr3_3:1815844-1815863 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG - chr3_3:1815845-1815864 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + chr3_3:1815857-1815876 Msa0437790:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG + chr3_3:1815870-1815889 Msa0437790:CDS 40.0%
TCAAGCAGTTTCTTTGCATC+AGG - chr3_3:1815896-1815915 None:intergenic 40.0%
TTGTGAGCACAACTGAATTG+AGG + chr3_3:1816219-1816238 Msa0437790:three_prime_UTR 40.0%
!! TCACTGGCTTAATTAACTGG+TGG - chr3_3:1816283-1816302 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG - chr3_3:1816286-1816305 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG + chr3_3:1816289-1816308 Msa0437790:three_prime_UTR 40.0%
CTGTGTATTCTAAGCTAGCT+AGG - chr3_3:1816324-1816343 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG + chr3_3:1816426-1816445 Msa0437790:three_prime_UTR 40.0%
TCTCTTCTTCTCCATCGGAA+TGG + chr3_3:1815205-1815224 Msa0437790:exon 45.0%
!! CGGAATGGATTGCAATTTGC+AGG + chr3_3:1815220-1815239 Msa0437790:exon 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - chr3_3:1815332-1815351 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG - chr3_3:1815360-1815379 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG - chr3_3:1815474-1815493 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG - chr3_3:1815559-1815578 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG + chr3_3:1815579-1815598 Msa0437790:CDS 45.0%
TGTGTGGTGGTACAGGAAAA+TGG + chr3_3:1815735-1815754 Msa0437790:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + chr3_3:1815833-1815852 Msa0437790:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + chr3_3:1815839-1815858 Msa0437790:CDS 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG - chr3_3:1815991-1816010 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG - chr3_3:1815992-1816011 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG - chr3_3:1815996-1816015 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG + chr3_3:1816240-1816259 Msa0437790:three_prime_UTR 45.0%
CCAGTGACTGCAATGGTAAT+CGG + chr3_3:1816296-1816315 Msa0437790:three_prime_UTR 45.0%
TCCTCAAAGATGTGTCAAGC+GGG + chr3_3:1816651-1816670 Msa0437790:three_prime_UTR 45.0%
TCTCTTCTTCTCCATCGGAA+TGG + chr3_3:1815205-1815224 Msa0437790:exon 45.0%
!! CGGAATGGATTGCAATTTGC+AGG + chr3_3:1815220-1815239 Msa0437790:exon 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - chr3_3:1815332-1815351 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG - chr3_3:1815360-1815379 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG - chr3_3:1815474-1815493 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG - chr3_3:1815559-1815578 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG + chr3_3:1815579-1815598 Msa0437790:CDS 45.0%
TGTGTGGTGGTACAGGAAAA+TGG + chr3_3:1815735-1815754 Msa0437790:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + chr3_3:1815833-1815852 Msa0437790:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + chr3_3:1815839-1815858 Msa0437790:CDS 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG - chr3_3:1815991-1816010 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG - chr3_3:1815992-1816011 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG - chr3_3:1815996-1816015 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG + chr3_3:1816240-1816259 Msa0437790:three_prime_UTR 45.0%
CCAGTGACTGCAATGGTAAT+CGG + chr3_3:1816296-1816315 Msa0437790:three_prime_UTR 45.0%
AGAGCACACGACCTATGGAT+TGG + chr3_3:1815136-1815155 Msa0437790:five_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG - chr3_3:1815349-1815368 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG + chr3_3:1815352-1815371 Msa0437790:CDS 50.0%
TACCTTGGAGTTGGAAGAGG+AGG - chr3_3:1815357-1815376 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG + chr3_3:1815555-1815574 Msa0437790:CDS 50.0%
CCACAATTTCTGCAACCTGG+AGG - chr3_3:1815573-1815592 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG + chr3_3:1815570-1815589 Msa0437790:CDS 50.0%
CCACCACAATTTCTGCAACC+TGG - chr3_3:1815576-1815595 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG + chr3_3:1815573-1815592 Msa0437790:CDS 50.0%
GGTGATATGTGTGGTGGTAC+AGG + chr3_3:1815728-1815747 Msa0437790:intron 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG - chr3_3:1815987-1816006 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG - chr3_3:1816299-1816318 None:intergenic 50.0%
AGAGCACACGACCTATGGAT+TGG + chr3_3:1815136-1815155 Msa0437790:five_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG - chr3_3:1815349-1815368 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG + chr3_3:1815352-1815371 Msa0437790:CDS 50.0%
TACCTTGGAGTTGGAAGAGG+AGG - chr3_3:1815357-1815376 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG + chr3_3:1815555-1815574 Msa0437790:CDS 50.0%
CCACAATTTCTGCAACCTGG+AGG - chr3_3:1815573-1815592 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG + chr3_3:1815570-1815589 Msa0437790:CDS 50.0%
CCACCACAATTTCTGCAACC+TGG - chr3_3:1815576-1815595 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG + chr3_3:1815573-1815592 Msa0437790:CDS 50.0%
GGTGATATGTGTGGTGGTAC+AGG + chr3_3:1815728-1815747 Msa0437790:intron 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG - chr3_3:1815987-1816006 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG - chr3_3:1816299-1816318 None:intergenic 50.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - chr3_3:1815257-1815276 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG - chr3_3:1815978-1815997 None:intergenic 55.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - chr3_3:1815257-1815276 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG - chr3_3:1815978-1815997 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1815132 1816672 1815132 ID=Msa0437790;Name=Msa0437790
chr3_3 mRNA 1815132 1816672 1815132 ID=Msa0437790-mRNA-1;Parent=Msa0437790;Name=Msa0437790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=92|1|1|1|0.5|0.4|5|447|179
chr3_3 exon 1815132 1815373 1815132 ID=Msa0437790-mRNA-1:exon:325;Parent=Msa0437790-mRNA-1
chr3_3 exon 1815447 1815612 1815447 ID=Msa0437790-mRNA-1:exon:326;Parent=Msa0437790-mRNA-1
chr3_3 exon 1815729 1815958 1815729 ID=Msa0437790-mRNA-1:exon:327;Parent=Msa0437790-mRNA-1
chr3_3 exon 1816212 1816370 1816212 ID=Msa0437790-mRNA-1:exon:328;Parent=Msa0437790-mRNA-1
chr3_3 exon 1816391 1816672 1816391 ID=Msa0437790-mRNA-1:exon:329;Parent=Msa0437790-mRNA-1
chr3_3 five_prime_UTR 1815132 1815223 1815132 ID=Msa0437790-mRNA-1:five_prime_utr;Parent=Msa0437790-mRNA-1
chr3_3 CDS 1815224 1815373 1815224 ID=Msa0437790-mRNA-1:cds;Parent=Msa0437790-mRNA-1
chr3_3 CDS 1815447 1815612 1815447 ID=Msa0437790-mRNA-1:cds;Parent=Msa0437790-mRNA-1
chr3_3 CDS 1815729 1815952 1815729 ID=Msa0437790-mRNA-1:cds;Parent=Msa0437790-mRNA-1
chr3_3 three_prime_UTR 1815953 1815958 1815953 ID=Msa0437790-mRNA-1:three_prime_utr;Parent=Msa0437790-mRNA-1
chr3_3 three_prime_UTR 1816212 1816370 1816212 ID=Msa0437790-mRNA-1:three_prime_utr;Parent=Msa0437790-mRNA-1
chr3_3 three_prime_UTR 1816391 1816672 1816391 ID=Msa0437790-mRNA-1:three_prime_utr;Parent=Msa0437790-mRNA-1
Gene Sequence

>Msa0437790

ATGGATTGCAATTTGCAGGCGTCTGTTATTCCTCGATGCCTTCCTCCAACTTCTTTTATCAAACAAACAGGAAGGACGCGTTCTTTTATTGTTAAATCCACTCTTCCTCAAAATCAAGGACACCACTCTTCCTCCTCTTCCAACTCCAAGGAAGAAGAAGAAGAAGAAGTGGTCCCAGTAAATGTTGTTTCCAGGCGTCAATGTCTTAAATGTTTATGTTCAACTCCATTTTTAATTAATGCAACAAACGCAGCAGCAACCGCTCTTGATAAACCTCCAGGTTGCAGAAATTGTGGTGGAAGTGGTAACATCATCTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCACAAGATGTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAGGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAAACAATAAAGGTCTTCTCAGGAGGCCTGATGCAAAGAAACTGCTTGATAAGATGTATAATGGACGCCTACTTCCCAATTCTTAG

Protein sequence

>Msa0437790

MDCNLQASVIPRCLPPTSFIKQTGRTRSFIVKSTLPQNQGHHSSSSSNSKEEEEEEVVPVNVVSRRQCLKCLCSTPFLINATNAAATALDKPPGCRNCGGSGNIICDMCGGTGKWKALNRKRAQDVYEFTECPNCYGRGKLVCPVCLGTGVPNNKGLLRRPDAKKLLDKMYNGRLLPNS*