Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441180 | XP_003598118.2 | 94.203 | 345 | 20 | 0 | 5 | 349 | 41 | 385 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441180 | G7IV96 | 94.203 | 345 | 20 | 0 | 5 | 349 | 41 | 385 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002060 | Msa0441180 | 0.818395 | 2.004252e-52 | -8.615850e-47 |
| Msa0012460 | Msa0441180 | 0.818656 | 1.749317e-52 | -8.615850e-47 |
| Msa0015720 | Msa0441180 | 0.800503 | 1.398098e-48 | -8.615850e-47 |
| Msa0016110 | Msa0441180 | 0.808208 | 3.467763e-50 | -8.615850e-47 |
| Msa0016160 | Msa0441180 | 0.815086 | 1.106717e-51 | -8.615850e-47 |
| Msa0030740 | Msa0441180 | 0.807419 | 5.102513e-50 | -8.615850e-47 |
| Msa0034320 | Msa0441180 | 0.809166 | 2.164459e-50 | -8.615850e-47 |
| Msa0037300 | Msa0441180 | 0.806667 | 7.360449e-50 | -8.615850e-47 |
| Msa0043680 | Msa0441180 | 0.816109 | 6.550731e-52 | -8.615850e-47 |
| Msa0046360 | Msa0441180 | 0.808694 | 2.730882e-50 | -8.615850e-47 |
| Msa0057740 | Msa0441180 | 0.801791 | 7.622125e-49 | -8.615850e-47 |
| Msa0065390 | Msa0441180 | 0.804397 | 2.203596e-49 | -8.615850e-47 |
| Msa0092680 | Msa0441180 | 0.807622 | 4.619842e-50 | -8.615850e-47 |
| Msa0096830 | Msa0441180 | 0.818700 | 1.709559e-52 | -8.615850e-47 |
| Msa0103060 | Msa0441180 | 0.804124 | 2.511077e-49 | -8.615850e-47 |
| Msa0104190 | Msa0441180 | 0.802584 | 5.234378e-49 | -8.615850e-47 |
| Msa0107460 | Msa0441180 | 0.814403 | 1.568211e-51 | -8.615850e-47 |
| Msa0110710 | Msa0441180 | 0.804168 | 2.458250e-49 | -8.615850e-47 |
| Msa0122210 | Msa0441180 | 0.804630 | 1.969641e-49 | -8.615850e-47 |
| Msa0133450 | Msa0441180 | 0.807570 | 4.739719e-50 | -8.615850e-47 |
| Msa0144340 | Msa0441180 | 0.802316 | 5.944705e-49 | -8.615850e-47 |
| Msa0149070 | Msa0441180 | 0.806919 | 6.510242e-50 | -8.615850e-47 |
| Msa0152380 | Msa0441180 | 0.810723 | 1.000443e-50 | -8.615850e-47 |
| Msa0155550 | Msa0441180 | 0.800480 | 1.412794e-48 | -8.615850e-47 |
| Msa0173610 | Msa0441180 | 0.806056 | 9.898588e-50 | -8.615850e-47 |
| Msa0176710 | Msa0441180 | 0.807376 | 5.210519e-50 | -8.615850e-47 |
| Msa0178020 | Msa0441180 | 0.806603 | 7.591237e-50 | -8.615850e-47 |
| Msa0195670 | Msa0441180 | 0.801679 | 8.033924e-49 | -8.615850e-47 |
| Msa0216790 | Msa0441180 | 0.818382 | 2.018475e-52 | -8.615850e-47 |
| Msa0222070 | Msa0441180 | 0.801958 | 7.042173e-49 | -8.615850e-47 |
| Msa0222120 | Msa0441180 | 0.801876 | 7.322732e-49 | -8.615850e-47 |
| Msa0223280 | Msa0441180 | 0.814781 | 1.293371e-51 | -8.615850e-47 |
| Msa0225010 | Msa0441180 | 0.803968 | 2.705570e-49 | -8.615850e-47 |
| Msa0236350 | Msa0441180 | 0.804341 | 2.263277e-49 | -8.615850e-47 |
| Msa0393140 | Msa0441180 | 0.810589 | 1.069179e-50 | -8.615850e-47 |
| Msa0416540 | Msa0441180 | 0.800646 | 1.307105e-48 | -8.615850e-47 |
| Msa0440720 | Msa0441180 | 0.826003 | 3.443270e-54 | -8.615850e-47 |
| Msa0441180 | Msa0467080 | 0.801381 | 9.249486e-49 | -8.615850e-47 |
| Msa0441180 | Msa0469270 | 0.806325 | 8.691161e-50 | -8.615850e-47 |
| Msa0441180 | Msa0485210 | 0.803423 | 3.510853e-49 | -8.615850e-47 |
| Msa0441180 | Msa0497060 | 0.808008 | 3.825140e-50 | -8.615850e-47 |
| Msa0441180 | Msa0500510 | 0.829476 | 5.039051e-55 | -8.615850e-47 |
| Msa0441180 | Msa0508770 | 0.809509 | 1.827300e-50 | -8.615850e-47 |
| Msa0441180 | Msa0519090 | 0.802633 | 5.115059e-49 | -8.615850e-47 |
| Msa0441180 | Msa0532880 | 0.824474 | 7.914954e-54 | -8.615850e-47 |
| Msa0441180 | Msa0544780 | 0.810540 | 1.095576e-50 | -8.615850e-47 |
| Msa0441180 | Msa0567290 | 0.804172 | 2.454035e-49 | -8.615850e-47 |
| Msa0441180 | Msa0572820 | 0.810340 | 1.210202e-50 | -8.615850e-47 |
| Msa0441180 | Msa0595780 | 0.815650 | 8.294577e-52 | -8.615850e-47 |
| Msa0441180 | Msa0607280 | 0.832702 | 8.129933e-56 | -8.615850e-47 |
| Msa0441180 | Msa0612730 | 0.809612 | 1.736537e-50 | -8.615850e-47 |
| Msa0441180 | Msa0617120 | 0.824561 | 7.549389e-54 | -8.615850e-47 |
| Msa0441180 | Msa0647460 | 0.804015 | 2.645487e-49 | -8.615850e-47 |
| Msa0441180 | Msa0648810 | 0.802396 | 5.722706e-49 | -8.615850e-47 |
| Msa0441180 | Msa0650860 | 0.804073 | 2.573187e-49 | -8.615850e-47 |
| Msa0441180 | Msa0653690 | 0.827297 | 1.690726e-54 | -8.615850e-47 |
| Msa0441180 | Msa0663650 | 0.810874 | 9.277752e-51 | -8.615850e-47 |
| Msa0441180 | Msa0679270 | 0.807722 | 4.398552e-50 | -8.615850e-47 |
| Msa0441180 | Msa0684520 | 0.807476 | 4.962649e-50 | -8.615850e-47 |
| Msa0441180 | Msa0694910 | 0.801649 | 8.150853e-49 | -8.615850e-47 |
| Msa0441180 | Msa0698900 | 0.801740 | 7.806416e-49 | -8.615850e-47 |
| Msa0441180 | Msa0701530 | 0.810380 | 1.186256e-50 | -8.615850e-47 |
| Msa0441180 | Msa0702070 | 0.814937 | 1.194390e-51 | -8.615850e-47 |
| Msa0441180 | Msa0702120 | 0.817905 | 2.587869e-52 | -8.615850e-47 |
| Msa0441180 | Msa0704570 | 0.801220 | 9.978394e-49 | -8.615850e-47 |
| Msa0441180 | Msa0712670 | 0.832381 | 9.763831e-56 | -8.615850e-47 |
| Msa0441180 | Msa0716670 | 0.814678 | 1.363200e-51 | -8.615850e-47 |
| Msa0441180 | Msa0726650 | 0.800998 | 1.108022e-48 | -8.615850e-47 |
| Msa0441180 | Msa0728830 | 0.805015 | 1.636482e-49 | -8.615850e-47 |
| Msa0441180 | Msa0734000 | 0.812656 | 3.798546e-51 | -8.615850e-47 |
| Msa0441180 | Msa0755570 | 0.829175 | 5.962122e-55 | -8.615850e-47 |
| Msa0441180 | Msa0799490 | 0.818515 | 1.883308e-52 | -8.615850e-47 |
| Msa0441180 | Msa0825960 | 0.819758 | 9.818783e-53 | -8.615850e-47 |
| Msa0441180 | Msa0828810 | 0.800756 | 1.241111e-48 | -8.615850e-47 |
| Msa0441180 | Msa0835030 | 0.815325 | 9.795950e-52 | -8.615850e-47 |
| Msa0441180 | Msa0854190 | 0.815521 | 8.860816e-52 | -8.615850e-47 |
| Msa0441180 | Msa0865280 | 0.819917 | 9.027920e-53 | -8.615850e-47 |
| Msa0441180 | Msa0873060 | 0.822217 | 2.666308e-53 | -8.615850e-47 |
| Msa0441180 | Msa0900320 | 0.808192 | 3.494040e-50 | -8.615850e-47 |
| Msa0441180 | Msa0909540 | 0.820845 | 5.529501e-53 | -8.615850e-47 |
| Msa0441180 | Msa0938370 | 0.812893 | 3.370718e-51 | -8.615850e-47 |
| Msa0441180 | Msa0959710 | 0.806113 | 9.629998e-50 | -8.615850e-47 |
| Msa0441180 | Msa0966410 | 0.820437 | 6.863576e-53 | -8.615850e-47 |
| Msa0441180 | Msa1002980 | 0.805741 | 1.152873e-49 | -8.615850e-47 |
| Msa0441180 | Msa1013510 | 0.806651 | 7.416197e-50 | -8.615850e-47 |
| Msa0441180 | Msa1022310 | 0.800720 | 1.262281e-48 | -8.615850e-47 |
| Msa0441180 | Msa1030820 | 0.808386 | 3.177642e-50 | -8.615850e-47 |
| Msa0441180 | Msa1033160 | 0.812436 | 4.244069e-51 | -8.615850e-47 |
| Msa0441180 | Msa1040390 | 0.809011 | 2.335524e-50 | -8.615850e-47 |
| Msa0441180 | Msa1061520 | 0.801224 | 9.958996e-49 | -8.615850e-47 |
| Msa0441180 | Msa1069450 | 0.810388 | 1.181680e-50 | -8.615850e-47 |
| Msa0441180 | Msa1075120 | 0.817033 | 4.066398e-52 | -8.615850e-47 |
| Msa0441180 | Msa1083140 | 0.826062 | 3.333687e-54 | -8.615850e-47 |
| Msa0441180 | Msa1088690 | 0.862174 | 6.108370e-64 | -8.615850e-47 |
| Msa0441180 | Msa1090230 | 0.803492 | 3.396981e-49 | -8.615850e-47 |
| Msa0441180 | Msa1104860 | 0.816315 | 5.891599e-52 | -8.615850e-47 |
| Msa0441180 | Msa1106830 | 0.837790 | 4.221649e-57 | -8.615850e-47 |
| Msa0441180 | Msa1111670 | 0.807579 | 4.717329e-50 | -8.615850e-47 |
| Msa0441180 | Msa1127900 | 0.831033 | 2.099904e-55 | -8.615850e-47 |
| Msa0441180 | Msa1130660 | 0.827388 | 1.608386e-54 | -8.615850e-47 |
| Msa0441180 | Msa1132540 | 0.819244 | 1.286005e-52 | -8.615850e-47 |
| Msa0441180 | Msa1154130 | 0.816337 | 5.825527e-52 | -8.615850e-47 |
| Msa0441180 | Msa1156270 | 0.805562 | 1.257207e-49 | -8.615850e-47 |
| Msa0441180 | Msa1157680 | 0.805455 | 1.323845e-49 | -8.615850e-47 |
| Msa0441180 | Msa1165810 | 0.843158 | 1.664479e-58 | -8.615850e-47 |
| Msa0441180 | Msa1177960 | 0.813181 | 2.914747e-51 | -8.615850e-47 |
| Msa0441180 | Msa1196990 | 0.804418 | 2.181142e-49 | -8.615850e-47 |
| Msa0441180 | Msa1209790 | 0.802379 | 5.769705e-49 | -8.615850e-47 |
| Msa0441180 | Msa1214080 | 0.804773 | 1.839257e-49 | -8.615850e-47 |
| Msa0441180 | Msa1220680 | 0.829941 | 3.882330e-55 | -8.615850e-47 |
| Msa0441180 | Msa1237750 | 0.822680 | 2.080598e-53 | -8.615850e-47 |
| Msa0441180 | Msa1244180 | 0.848773 | 4.950619e-60 | -8.615850e-47 |
| Msa0441180 | Msa1249740 | 0.800782 | 1.226309e-48 | -8.615850e-47 |
| Msa0441180 | Msa1250490 | 0.820181 | 7.853851e-53 | -8.615850e-47 |
| Msa0441180 | Msa1258940 | 0.804830 | 1.789126e-49 | -8.615850e-47 |
| Msa0441180 | Msa1263590 | 0.866961 | 1.943397e-65 | -8.615850e-47 |
| Msa0441180 | Msa1263670 | 0.866490 | 2.744905e-65 | -8.615850e-47 |
| Msa0441180 | Msa1269730 | 0.803408 | 3.536402e-49 | -8.615850e-47 |
| Msa0441180 | Msa1272340 | 0.803680 | 3.105124e-49 | -8.615850e-47 |
| Msa0441180 | Msa1279340 | 0.823035 | 1.719753e-53 | -8.615850e-47 |
| Msa0441180 | Msa1286910 | 0.810021 | 1.417905e-50 | -8.615850e-47 |
| Msa0441180 | Msa1300880 | 0.811745 | 6.002699e-51 | -8.615850e-47 |
| Msa0441180 | Msa1318180 | 0.810936 | 8.994601e-51 | -8.615850e-47 |
| Msa0441180 | Msa1319520 | 0.819070 | 1.408639e-52 | -8.615850e-47 |
| Msa0441180 | Msa1342080 | 0.807084 | 6.006320e-50 | -8.615850e-47 |
| Msa0441180 | Msa1349360 | 0.801964 | 7.022195e-49 | -8.615850e-47 |
| Msa0441180 | Msa1356730 | 0.800838 | 1.194527e-48 | -8.615850e-47 |
| Msa0441180 | Msa1364650 | 0.820242 | 7.606139e-53 | -8.615850e-47 |
| Msa0441180 | Msa1375120 | 0.807056 | 6.090321e-50 | -8.615850e-47 |
| Msa0441180 | Msa1388610 | 0.822545 | 2.236651e-53 | -8.615850e-47 |
| Msa0441180 | Msa1411390 | 0.806182 | 9.313639e-50 | -8.615850e-47 |
| Msa0441180 | Msa1416460 | 0.806588 | 7.648708e-50 | -8.615850e-47 |
| Msa0441180 | Msa1420600 | 0.833041 | 6.694800e-56 | -8.615850e-47 |
| Msa0441180 | Msa1423190 | 0.813927 | 1.997605e-51 | -8.615850e-47 |
| Msa0441180 | Msa1425540 | 0.822024 | 2.954385e-53 | -8.615850e-47 |
| Msa0441180 | Msa1435690 | 0.802640 | 5.097407e-49 | -8.615850e-47 |
| Msa0441180 | Msa1435910 | 0.803071 | 4.151669e-49 | -8.615850e-47 |
| Msa0441180 | Msa1439800 | 0.801675 | 8.049005e-49 | -8.615850e-47 |
| Msa0441180 | Msa1439880 | 0.806462 | 8.130577e-50 | -8.615850e-47 |
| Msa0441180 | Msa1449680 | 0.810810 | 9.576074e-51 | -8.615850e-47 |
| Msa0441180 | Msa1453540 | 0.807324 | 5.343265e-50 | -8.615850e-47 |
| Msa0441180 | Msa1455120 | 0.817794 | 2.741585e-52 | -8.615850e-47 |
| Msa0243160 | Msa0441180 | 0.834738 | 2.519256e-56 | -8.615850e-47 |
| Msa0259980 | Msa0441180 | 0.809288 | 2.037538e-50 | -8.615850e-47 |
| Msa0263620 | Msa0441180 | 0.803476 | 3.423947e-49 | -8.615850e-47 |
| Msa0273270 | Msa0441180 | 0.800814 | 1.208206e-48 | -8.615850e-47 |
| Msa0274870 | Msa0441180 | 0.811746 | 6.001483e-51 | -8.615850e-47 |
| Msa0280120 | Msa0441180 | 0.812809 | 3.516752e-51 | -8.615850e-47 |
| Msa0296000 | Msa0441180 | 0.803115 | 4.066006e-49 | -8.615850e-47 |
| Msa0304870 | Msa0441180 | 0.825104 | 5.622370e-54 | -8.615850e-47 |
| Msa0319210 | Msa0441180 | 0.826145 | 3.184987e-54 | -8.615850e-47 |
| Msa0321230 | Msa0441180 | 0.838043 | 3.634794e-57 | -8.615850e-47 |
| Msa0322480 | Msa0441180 | 0.804306 | 2.301056e-49 | -8.615850e-47 |
| Msa0333900 | Msa0441180 | 0.802064 | 6.697504e-49 | -8.615850e-47 |
| Msa0334020 | Msa0441180 | 0.805214 | 1.487055e-49 | -8.615850e-47 |
| Msa0335740 | Msa0441180 | 0.806649 | 7.425549e-50 | -8.615850e-47 |
| Msa0335860 | Msa0441180 | 0.846894 | 1.629833e-59 | -8.615850e-47 |
| Msa0341260 | Msa0441180 | 0.824753 | 6.804786e-54 | -8.615850e-47 |
| Msa0354490 | Msa0441180 | 0.815065 | 1.118640e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441180 | MtrunA17_Chr3g0078481 | 95.549 | 337 | 15 | 0 | 13 | 349 | 47 | 383 | 0.0 | 636 |
| Msa0441180 | MtrunA17_Chr3g0114921 | 68.168 | 333 | 103 | 3 | 14 | 344 | 112 | 443 | 1.52e-159 | 454 |
| Msa0441180 | MtrunA17_Chr3g0114931 | 64.458 | 332 | 110 | 4 | 17 | 346 | 114 | 439 | 1.42e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441180 | AT2G41705.3 | 60.597 | 335 | 123 | 4 | 13 | 344 | 128 | 456 | 1.62e-126 | 371 |
| Msa0441180 | AT2G41705.2 | 60.597 | 335 | 123 | 4 | 13 | 344 | 128 | 456 | 1.62e-126 | 371 |
| Msa0441180 | AT2G41705.4 | 60.597 | 335 | 123 | 4 | 13 | 344 | 128 | 456 | 1.62e-126 | 371 |
| Msa0441180 | AT2G41705.1 | 60.597 | 335 | 123 | 4 | 13 | 344 | 128 | 456 | 1.62e-126 | 371 |
Find 76 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATACTGTGTGCCTATT+TGG | 0.130972 | 3_3:+9575680 | Msa0441180:CDS |
| TAAAGAATTGCCAAAGTTAT+TGG | 0.149331 | 3_3:+9572705 | Msa0441180:CDS |
| TATACTCTGGACAAGTTATT+TGG | 0.190006 | 3_3:+9573549 | Msa0441180:CDS |
| CACAAAAGTATTACTTTCTA+TGG | 0.230343 | 3_3:-9575732 | None:intergenic |
| GTTTCAAGTGGCTTCTTATA+AGG | 0.252360 | 3_3:+9574882 | Msa0441180:CDS |
| CGATTAAATGGACATGGTTT+AGG | 0.253012 | 3_3:+9575133 | Msa0441180:CDS |
| CTCTTGGTGTGTGGATTAGA+TGG | 0.264943 | 3_3:+9575101 | Msa0441180:CDS |
| AATTCATCCATTCTCCAAAT+AGG | 0.275234 | 3_3:-9575694 | None:intergenic |
| TGCTTCATATTTGATTCATT+TGG | 0.285021 | 3_3:+9572732 | Msa0441180:CDS |
| GACCAAGAGGTTTGTTGAAT+TGG | 0.286889 | 3_3:+9575155 | Msa0441180:CDS |
| ATGCTTGAACTCAGTGTTAC+TGG | 0.290373 | 3_3:+9574160 | Msa0441180:CDS |
| CCTTGACCTTCCTTCTAATA+TGG | 0.294484 | 3_3:+9573614 | Msa0441180:CDS |
| CTAAACCATGTCCATTTAAT+CGG | 0.329285 | 3_3:-9575132 | None:intergenic |
| GATTGTGATACAATTGTAAA+AGG | 0.335997 | 3_3:+9575514 | Msa0441180:CDS |
| CAAACATCACTTAGCAGTTA+TGG | 0.336380 | 3_3:+9574967 | Msa0441180:CDS |
| TGACTGTTGTCTTCAGTTGC+AGG | 0.343230 | 3_3:+9572675 | Msa0441180:CDS |
| ATCAAATGTGTCCAAGTATC+TGG | 0.347261 | 3_3:+9574075 | Msa0441180:CDS |
| CTGTGGATCGCTTGCATTGT+TGG | 0.347554 | 3_3:+9575076 | Msa0441180:CDS |
| GGCTTGTTATGGGGTATTAG+TGG | 0.347642 | 3_3:+9575010 | Msa0441180:CDS |
| AACTCAGTGTTACTGGGAAT+TGG | 0.357866 | 3_3:+9574167 | Msa0441180:CDS |
| AATTGGCTCTTTGTTGTGCT+TGG | 0.359346 | 3_3:+9574184 | Msa0441180:CDS |
| GTTGTGCTTGGCTTTCTAAT+AGG | 0.360921 | 3_3:+9574196 | Msa0441180:CDS |
| ATTGTAAAAGGCATACAGTT+TGG | 0.370527 | 3_3:+9575526 | Msa0441180:CDS |
| GGCATACAGTTTGGCCTGTT+GGG | 0.378588 | 3_3:+9575535 | Msa0441180:CDS |
| AACTTTGGCAATTCTTTACT+AGG | 0.383927 | 3_3:-9572700 | None:intergenic |
| GCTTGCATTGTTGGACCTCT+TGG | 0.384115 | 3_3:+9575085 | Msa0441180:CDS |
| TACAATTGTATCACAATCTC+TGG | 0.387105 | 3_3:-9575509 | None:intergenic |
| GAAGCCTTCCACCTTTGCCT+TGG | 0.401735 | 3_3:-9574945 | None:intergenic |
| GCACTAACAACTGGTTACTT+AGG | 0.409745 | 3_3:+9574103 | Msa0441180:CDS |
| GTGACAGTGCATTTACTTGA+AGG | 0.413152 | 3_3:+9575752 | Msa0441180:three_prime_UTR |
| GTCTAACAACGTTCAGCGGC+TGG | 0.427914 | 3_3:+9574128 | Msa0441180:CDS |
| CAGTACTCAAACAGCCCAAC+AGG | 0.431398 | 3_3:-9575549 | None:intergenic |
| TTGTTGAATTGGATGCGATT+TGG | 0.438896 | 3_3:+9575166 | Msa0441180:CDS |
| TGAGAGAAAGCGAGCACCCT+TGG | 0.443628 | 3_3:+9575602 | Msa0441180:CDS |
| CTGGCTGTTGCACTAACAAC+TGG | 0.450496 | 3_3:+9574094 | Msa0441180:CDS |
| AAAGTAGAGACCATATTAGA+AGG | 0.455328 | 3_3:-9573624 | None:intergenic |
| GAAGCATTATCCAATAACTT+TGG | 0.459077 | 3_3:-9572715 | None:intergenic |
| TATCCCAAATATGATGGAAA+AGG | 0.466392 | 3_3:-9574846 | None:intergenic |
| CACTAACAACTGGTTACTTA+GGG | 0.468627 | 3_3:+9574104 | Msa0441180:CDS |
| TAGTGCAACAGCCAGATACT+TGG | 0.469450 | 3_3:-9574086 | None:intergenic |
| AGGCATACAGTTTGGCCTGT+TGG | 0.477755 | 3_3:+9575534 | Msa0441180:CDS |
| TATTACTTTCTATGGTTACC+TGG | 0.484941 | 3_3:-9575724 | None:intergenic |
| CTAGTCACATGACCGACACT+AGG | 0.497152 | 3_3:-9573573 | None:intergenic |
| ATGGATGAATTATAAATGCC+AGG | 0.500159 | 3_3:+9575706 | Msa0441180:exon |
| TGTCTCTGCTGCTTGTATCA+TGG | 0.508900 | 3_3:+9575204 | Msa0441180:CDS |
| TAAACCATGTCCATTTAATC+GGG | 0.509369 | 3_3:-9575131 | None:intergenic |
| ATGATTGCTGAATTCAAGAA+TGG | 0.511956 | 3_3:+9575040 | Msa0441180:CDS |
| ATCCAATTCAACAAACCTCT+TGG | 0.516439 | 3_3:-9575157 | None:intergenic |
| TTTGGGATAGAAACTGCTAA+AGG | 0.518940 | 3_3:+9574860 | Msa0441180:CDS |
| CTGTGTGCCTATTTGGAGAA+TGG | 0.525340 | 3_3:+9575687 | Msa0441180:CDS |
| AGACAAGACCAAGGCAAAGG+TGG | 0.527905 | 3_3:+9574937 | Msa0441180:CDS |
| AGGAAGGTCAAGGTAAAGAA+TGG | 0.536699 | 3_3:-9573604 | None:intergenic |
| TGCTTGAACTCAGTGTTACT+GGG | 0.546484 | 3_3:+9574161 | Msa0441180:CDS |
| TTCATTGAACTCAGCGACAA+AGG | 0.556646 | 3_3:-9575578 | None:intergenic |
| GGTATTAACAAGATATACTC+TGG | 0.561065 | 3_3:+9573536 | Msa0441180:intron |
| TTGTTGGACCTCTTGGTGTG+TGG | 0.564817 | 3_3:+9575092 | Msa0441180:CDS |
| GTATAAACATATGCTCTCCA+AGG | 0.565816 | 3_3:-9575619 | None:intergenic |
| AAGTTATTTGGCCCTAGTGT+CGG | 0.566597 | 3_3:+9573561 | Msa0441180:CDS |
| TAGAGACCATATTAGAAGGA+AGG | 0.567138 | 3_3:-9573620 | None:intergenic |
| AGTTTCTATCCCAAATATGA+TGG | 0.569126 | 3_3:-9574852 | None:intergenic |
| GGTCAAGGTAAAGAATGGTC+TGG | 0.577428 | 3_3:-9573599 | None:intergenic |
| AAGACCAAGGCAAAGGTGGA+AGG | 0.588190 | 3_3:+9574941 | Msa0441180:CDS |
| TTATCCCGATTAAATGGACA+TGG | 0.592003 | 3_3:+9575127 | Msa0441180:CDS |
| CAGAGACAAGACCAAGGCAA+AGG | 0.597399 | 3_3:+9574934 | Msa0441180:CDS |
| TAGTCACATGACCGACACTA+GGG | 0.613234 | 3_3:-9573572 | None:intergenic |
| AAACTGCTAAAGGTTTCAAG+TGG | 0.621543 | 3_3:+9574870 | Msa0441180:CDS |
| GGACATGGTTTAGGACCAAG+AGG | 0.628280 | 3_3:+9575142 | Msa0441180:CDS |
| CCATATTAGAAGGAAGGTCA+AGG | 0.628711 | 3_3:-9573614 | None:intergenic |
| GGGAGTCTAACAACGTTCAG+CGG | 0.633659 | 3_3:+9574124 | Msa0441180:CDS |
| CATCTAATCCACACACCAAG+AGG | 0.633898 | 3_3:-9575100 | None:intergenic |
| TATAAACATATGCTCTCCAA+GGG | 0.634225 | 3_3:-9575618 | None:intergenic |
| ATGGTGAAAATGCTTATCTG+TGG | 0.657260 | 3_3:+9575059 | Msa0441180:CDS |
| ACATCACTTAGCAGTTATGG+TGG | 0.669583 | 3_3:+9574970 | Msa0441180:CDS |
| GCTATAGTGCTATAGCATAG+CGG | 0.734093 | 3_3:+9575863 | Msa0441180:three_prime_UTR |
| AGTTAGCAGAGACAAGACCA+AGG | 0.739505 | 3_3:+9574928 | Msa0441180:CDS |
| TAGCTGCTACTTGAAAACAG+TGG | 0.782474 | 3_3:-9575844 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATTTCAATTATTGTA+CGG | + | chr3_3:9573221-9573240 | Msa0441180:intron | 10.0% |
| !!! | TTCTTATTATTTTGATATTA+TGG | + | chr3_3:9575414-9575433 | Msa0441180:intron | 10.0% |
| !!! | TCTTATTATTTTGATATTAT+GGG | + | chr3_3:9575415-9575434 | Msa0441180:intron | 10.0% |
| !!! | TCATTTTCTGTTTATAATAT+CGG | + | chr3_3:9573152-9573171 | Msa0441180:intron | 15.0% |
| !! | TAATTTAAATAATCAATCAC+AGG | - | chr3_3:9573886-9573905 | None:intergenic | 15.0% |
| !! | TAACAATAATCATGTATTAT+AGG | + | chr3_3:9574701-9574720 | Msa0441180:intron | 15.0% |
| !! | AACAATAATCATGTATTATA+GGG | + | chr3_3:9574702-9574721 | Msa0441180:intron | 15.0% |
| !! | ATTATATTGCCCAAAAATAA+AGG | - | chr3_3:9573424-9573443 | None:intergenic | 20.0% |
| !! | TATAATGAACTTATGAATTC+TGG | + | chr3_3:9573438-9573457 | Msa0441180:intron | 20.0% |
| !! | AAACTATAGTTTATGAGAAA+AGG | + | chr3_3:9573835-9573854 | Msa0441180:intron | 20.0% |
| !!! | TACTGTTCAATAACTTTTTA+CGG | + | chr3_3:9574409-9574428 | Msa0441180:intron | 20.0% |
| !!! | ATATGTTCCTCATTATTTTT+AGG | + | chr3_3:9575652-9575671 | Msa0441180:CDS | 20.0% |
| !!! | TATGTTCCTCATTATTTTTA+GGG | + | chr3_3:9575653-9575672 | Msa0441180:CDS | 20.0% |
| !!! | GTCTTTTTTTTTCAATGAAA+AGG | + | chr3_3:9575809-9575828 | Msa0441180:three_prime_UTR | 20.0% |
| ! | TAAAGAATTGCCAAAGTTAT+TGG | + | chr3_3:9572705-9572724 | Msa0441180:CDS | 25.0% |
| ! | TGCTTCATATTTGATTCATT+TGG | + | chr3_3:9572732-9572751 | Msa0441180:CDS | 25.0% |
| !! | ATTTTATCATTGAAGTTCAG+AGG | - | chr3_3:9572790-9572809 | None:intergenic | 25.0% |
| ! | AAATATCATAAAGCTGAAGT+TGG | - | chr3_3:9573008-9573027 | None:intergenic | 25.0% |
| !! | AACTTCAGCTTTATGATATT+TGG | + | chr3_3:9573007-9573026 | Msa0441180:intron | 25.0% |
| ! | TGAAATAAAACCTCATGTAA+TGG | + | chr3_3:9573088-9573107 | Msa0441180:intron | 25.0% |
| !! | GATAATCTTCATCATCTTTT+AGG | + | chr3_3:9573190-9573209 | Msa0441180:intron | 25.0% |
| ! | GTTGTTCATACTTTATACAA+TGG | - | chr3_3:9573275-9573294 | None:intergenic | 25.0% |
| !!! | TTGTTGCATTCCTTTATTTT+TGG | + | chr3_3:9573411-9573430 | Msa0441180:intron | 25.0% |
| !!! | TGTTGCATTCCTTTATTTTT+GGG | + | chr3_3:9573412-9573431 | Msa0441180:intron | 25.0% |
| !!! | TTGTTTTGCTATTATAATGC+AGG | + | chr3_3:9573515-9573534 | Msa0441180:intron | 25.0% |
| ! | TTGATGTCATTATGATACAA+AGG | - | chr3_3:9573710-9573729 | None:intergenic | 25.0% |
| !! | AAAAGTGTAGACTTAATTTC+TGG | + | chr3_3:9573735-9573754 | Msa0441180:intron | 25.0% |
| ! | CAACTATAGTTTATGAGAAA+AGG | + | chr3_3:9573812-9573831 | Msa0441180:intron | 25.0% |
| !! | ACTTTTATGAATGTCTTTCT+AGG | + | chr3_3:9574003-9574022 | Msa0441180:intron | 25.0% |
| ! | TCTAATAGGTAATGTTAAGA+AGG | + | chr3_3:9574210-9574229 | Msa0441180:intron | 25.0% |
| !!! | GTTTGATAAGTATGTTTTAG+TGG | + | chr3_3:9574236-9574255 | Msa0441180:intron | 25.0% |
| !!! | ATAAGTATGTTTTAGTGGTA+TGG | + | chr3_3:9574241-9574260 | Msa0441180:intron | 25.0% |
| !! | TTTTATATGAGAACTAGAGA+AGG | + | chr3_3:9574479-9574498 | Msa0441180:intron | 25.0% |
| ! | TTTATATGAGAACTAGAGAA+GGG | + | chr3_3:9574480-9574499 | Msa0441180:intron | 25.0% |
| !! | AGGATGAGCTTTTAAATAAT+TGG | + | chr3_3:9574798-9574817 | Msa0441180:intron | 25.0% |
| ! | GATTGTGATACAATTGTAAA+AGG | + | chr3_3:9575514-9575533 | Msa0441180:CDS | 25.0% |
| ! | TAAGATCCCTAAAAATAATG+AGG | - | chr3_3:9575662-9575681 | None:intergenic | 25.0% |
| !!! | CACAAAAGTATTACTTTCTA+TGG | - | chr3_3:9575735-9575754 | None:intergenic | 25.0% |
| ! | CATTGAAAAAAAAAGACAAC+AGG | - | chr3_3:9575806-9575825 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAATGAAAAGGTC+AGG | + | chr3_3:9575814-9575833 | Msa0441180:three_prime_UTR | 25.0% |
| AACTTTGGCAATTCTTTACT+AGG | - | chr3_3:9572703-9572722 | None:intergenic | 30.0% | |
| ! | GAAGCATTATCCAATAACTT+TGG | - | chr3_3:9572718-9572737 | None:intergenic | 30.0% |
| !! | TTGATTCATTTGGCTGTTTT+CGG | + | chr3_3:9572742-9572761 | Msa0441180:CDS | 30.0% |
| GTAATGGTCAAATGGAAATA+AGG | - | chr3_3:9572842-9572861 | None:intergenic | 30.0% | |
| TATTTCCATTTGACCATTAC+TGG | + | chr3_3:9572842-9572861 | Msa0441180:intron | 30.0% | |
| ! | ACTATTTTCAGTTCATGTTG+TGG | + | chr3_3:9572883-9572902 | Msa0441180:intron | 30.0% |
| GTTTATAATATCGGTCGTAT+AGG | + | chr3_3:9573161-9573180 | Msa0441180:intron | 30.0% | |
| !!! | TTCATCATCTTTTAGGATCT+AGG | + | chr3_3:9573197-9573216 | Msa0441180:intron | 30.0% |
| GGTATTAACAAGATATACTC+TGG | + | chr3_3:9573536-9573555 | Msa0441180:intron | 30.0% | |
| TATACTCTGGACAAGTTATT+TGG | + | chr3_3:9573549-9573568 | Msa0441180:CDS | 30.0% | |
| AAAGTAGAGACCATATTAGA+AGG | - | chr3_3:9573627-9573646 | None:intergenic | 30.0% | |
| GTCATTATGATACAAAGGAA+TGG | - | chr3_3:9573705-9573724 | None:intergenic | 30.0% | |
| CGGAGCTTCTTAAAAATTTA+AGG | - | chr3_3:9573943-9573962 | None:intergenic | 30.0% | |
| ! | TCAAAAAAGTCTGTTGCTTA+TGG | - | chr3_3:9573979-9573998 | None:intergenic | 30.0% |
| TTATGAATGTCTTTCTAGGT+TGG | + | chr3_3:9574007-9574026 | Msa0441180:intron | 30.0% | |
| !!! | TAGGTTGGTTCTTTTCTTAT+GGG | + | chr3_3:9574022-9574041 | Msa0441180:intron | 30.0% |
| TTAAATAATTGGAGTTCTGC+AGG | + | chr3_3:9574809-9574828 | Msa0441180:intron | 30.0% | |
| TAAATAATTGGAGTTCTGCA+GGG | + | chr3_3:9574810-9574829 | Msa0441180:intron | 30.0% | |
| ! | TTGCCTTTTCCATCATATTT+GGG | + | chr3_3:9574843-9574862 | Msa0441180:CDS | 30.0% |
| ! | TATCCCAAATATGATGGAAA+AGG | - | chr3_3:9574849-9574868 | None:intergenic | 30.0% |
| AGTTTCTATCCCAAATATGA+TGG | - | chr3_3:9574855-9574874 | None:intergenic | 30.0% | |
| ATGATTGCTGAATTCAAGAA+TGG | + | chr3_3:9575040-9575059 | Msa0441180:CDS | 30.0% | |
| TAAACCATGTCCATTTAATC+GGG | - | chr3_3:9575134-9575153 | None:intergenic | 30.0% | |
| CTAAACCATGTCCATTTAAT+CGG | - | chr3_3:9575135-9575154 | None:intergenic | 30.0% | |
| TCAAGTTCGTGTTTGTATAA+AGG | + | chr3_3:9575295-9575314 | Msa0441180:intron | 30.0% | |
| ACAGATGAAACACATGTTAA+AGG | + | chr3_3:9575336-9575355 | Msa0441180:intron | 30.0% | |
| ATATCTCACTTGTTTGATGT+AGG | + | chr3_3:9575480-9575499 | Msa0441180:intron | 30.0% | |
| TACAATTGTATCACAATCTC+TGG | - | chr3_3:9575512-9575531 | None:intergenic | 30.0% | |
| ! | ATTGTAAAAGGCATACAGTT+TGG | + | chr3_3:9575526-9575545 | Msa0441180:CDS | 30.0% |
| TATAAACATATGCTCTCCAA+GGG | - | chr3_3:9575621-9575640 | None:intergenic | 30.0% | |
| TAATATACTGTGTGCCTATT+TGG | + | chr3_3:9575680-9575699 | Msa0441180:CDS | 30.0% | |
| AATTCATCCATTCTCCAAAT+AGG | - | chr3_3:9575697-9575716 | None:intergenic | 30.0% | |
| ATGGATGAATTATAAATGCC+AGG | + | chr3_3:9575706-9575725 | Msa0441180:exon | 30.0% | |
| TATTACTTTCTATGGTTACC+TGG | - | chr3_3:9575727-9575746 | None:intergenic | 30.0% | |
| ! | TGCGAGTAGTTAATCGTTTT+TGG | + | chr3_3:9572811-9572830 | Msa0441180:intron | 35.0% |
| ATCGTAAATCCAACCAGTAA+TGG | - | chr3_3:9572858-9572877 | None:intergenic | 35.0% | |
| !! | TGTCCTGTATTTTTCAACCT+AGG | + | chr3_3:9573312-9573331 | Msa0441180:intron | 35.0% |
| !! | GTCCTGTATTTTTCAACCTA+GGG | + | chr3_3:9573313-9573332 | Msa0441180:intron | 35.0% |
| ! | TTCCCTAGGTTGAAAAATAC+AGG | - | chr3_3:9573318-9573337 | None:intergenic | 35.0% |
| TCTGGTCATACTTTCATACT+AGG | + | chr3_3:9573456-9573475 | Msa0441180:intron | 35.0% | |
| TAGAGACCATATTAGAAGGA+AGG | - | chr3_3:9573623-9573642 | None:intergenic | 35.0% | |
| AATATGTATGTCAGAGAGAG+AGG | - | chr3_3:9573669-9573688 | None:intergenic | 35.0% | |
| CTGGTAACATTAGACAATGA+TGG | + | chr3_3:9573754-9573773 | Msa0441180:intron | 35.0% | |
| !!! | CTAGGTTGGTTCTTTTCTTA+TGG | + | chr3_3:9574021-9574040 | Msa0441180:intron | 35.0% |
| !! | TTGGTTCTTTTCTTATGGGA+TGG | + | chr3_3:9574026-9574045 | Msa0441180:CDS | 35.0% |
| ! | TCTTTTCTTATGGGATGGTT+TGG | + | chr3_3:9574031-9574050 | Msa0441180:CDS | 35.0% |
| ATCAAATGTGTCCAAGTATC+TGG | + | chr3_3:9574075-9574094 | Msa0441180:CDS | 35.0% | |
| CACTAACAACTGGTTACTTA+GGG | + | chr3_3:9574104-9574123 | Msa0441180:CDS | 35.0% | |
| TATATGACAAAACTCACCGT+TGG | + | chr3_3:9574437-9574456 | Msa0441180:intron | 35.0% | |
| GAGAAGGGATCAAATTACAT+TGG | + | chr3_3:9574495-9574514 | Msa0441180:intron | 35.0% | |
| !! | GAGAGTAAGTTTTGTAGTAC+AGG | + | chr3_3:9574651-9574670 | Msa0441180:intron | 35.0% |
| CACACACACATATATGAGAA+GGG | - | chr3_3:9574740-9574759 | None:intergenic | 35.0% | |
| ACACACACACATATATGAGA+AGG | - | chr3_3:9574741-9574760 | None:intergenic | 35.0% | |
| ! | GTTGCCTTTTCCATCATATT+TGG | + | chr3_3:9574842-9574861 | Msa0441180:CDS | 35.0% |
| ! | TTTGGGATAGAAACTGCTAA+AGG | + | chr3_3:9574860-9574879 | Msa0441180:CDS | 35.0% |
| AAACTGCTAAAGGTTTCAAG+TGG | + | chr3_3:9574870-9574889 | Msa0441180:CDS | 35.0% | |
| ! | GTTTCAAGTGGCTTCTTATA+AGG | + | chr3_3:9574882-9574901 | Msa0441180:CDS | 35.0% |
| CAAACATCACTTAGCAGTTA+TGG | + | chr3_3:9574967-9574986 | Msa0441180:CDS | 35.0% | |
| !!! | GTGGTGTTTTTGCTGATTTT+AGG | + | chr3_3:9574989-9575008 | Msa0441180:CDS | 35.0% |
| !!! | TGCTGATTTTAGGCTTGTTA+TGG | + | chr3_3:9574999-9575018 | Msa0441180:CDS | 35.0% |
| !!! | GCTGATTTTAGGCTTGTTAT+GGG | + | chr3_3:9575000-9575019 | Msa0441180:CDS | 35.0% |
| !!! | CTGATTTTAGGCTTGTTATG+GGG | + | chr3_3:9575001-9575020 | Msa0441180:CDS | 35.0% |
| ATGGTGAAAATGCTTATCTG+TGG | + | chr3_3:9575059-9575078 | Msa0441180:CDS | 35.0% | |
| ! | TGGCTTTTATCCCGATTAAA+TGG | + | chr3_3:9575121-9575140 | Msa0441180:CDS | 35.0% |
| TTATCCCGATTAAATGGACA+TGG | + | chr3_3:9575127-9575146 | Msa0441180:CDS | 35.0% | |
| CGATTAAATGGACATGGTTT+AGG | + | chr3_3:9575133-9575152 | Msa0441180:CDS | 35.0% | |
| ATCCAATTCAACAAACCTCT+TGG | - | chr3_3:9575160-9575179 | None:intergenic | 35.0% | |
| TTGTTGAATTGGATGCGATT+TGG | + | chr3_3:9575166-9575185 | Msa0441180:CDS | 35.0% | |
| ! | TGTGTTGACAAAACTGCAAT+AGG | - | chr3_3:9575365-9575384 | None:intergenic | 35.0% |
| GTATAAACATATGCTCTCCA+AGG | - | chr3_3:9575622-9575641 | None:intergenic | 35.0% | |
| !! | TTGGCTGTTTTCGGTATTCT+CGG | + | chr3_3:9572751-9572770 | Msa0441180:CDS | 40.0% |
| TCCATTTGACCATTACTGGT+TGG | + | chr3_3:9572846-9572865 | Msa0441180:intron | 40.0% | |
| TCCAACCAGTAATGGTCAAA+TGG | - | chr3_3:9572850-9572869 | None:intergenic | 40.0% | |
| ACATTGTACGCCATTACATG+AGG | - | chr3_3:9573101-9573120 | None:intergenic | 40.0% | |
| GGAATAAATGCAACTACTGC+AGG | - | chr3_3:9573254-9573273 | None:intergenic | 40.0% | |
| AAGTTATTTGGCCCTAGTGT+CGG | + | chr3_3:9573561-9573580 | Msa0441180:CDS | 40.0% | |
| AGGAAGGTCAAGGTAAAGAA+TGG | - | chr3_3:9573607-9573626 | None:intergenic | 40.0% | |
| CCATATTAGAAGGAAGGTCA+AGG | - | chr3_3:9573617-9573636 | None:intergenic | 40.0% | |
| CCTTGACCTTCCTTCTAATA+TGG | + | chr3_3:9573614-9573633 | Msa0441180:CDS | 40.0% | |
| CTTATGGAGAAGTTAGACGA+CGG | - | chr3_3:9573963-9573982 | None:intergenic | 40.0% | |
| GCACTAACAACTGGTTACTT+AGG | + | chr3_3:9574103-9574122 | Msa0441180:CDS | 40.0% | |
| ATGCTTGAACTCAGTGTTAC+TGG | + | chr3_3:9574160-9574179 | Msa0441180:CDS | 40.0% | |
| ! | TGCTTGAACTCAGTGTTACT+GGG | + | chr3_3:9574161-9574180 | Msa0441180:CDS | 40.0% |
| ! | AACTCAGTGTTACTGGGAAT+TGG | + | chr3_3:9574167-9574186 | Msa0441180:CDS | 40.0% |
| ! | AATTGGCTCTTTGTTGTGCT+TGG | + | chr3_3:9574184-9574203 | Msa0441180:CDS | 40.0% |
| ! | GTTGTGCTTGGCTTTCTAAT+AGG | + | chr3_3:9574196-9574215 | Msa0441180:CDS | 40.0% |
| CAGAGGAACTTTCAATCCAA+CGG | - | chr3_3:9574456-9574475 | None:intergenic | 40.0% | |
| ! | GTTCTCATATAAAAGCGCAG+AGG | - | chr3_3:9574473-9574492 | None:intergenic | 40.0% |
| AATTATCGCAGTCTATGCAG+CGG | + | chr3_3:9574766-9574785 | Msa0441180:intron | 40.0% | |
| ACATCACTTAGCAGTTATGG+TGG | + | chr3_3:9574970-9574989 | Msa0441180:CDS | 40.0% | |
| !! | GACCAAGAGGTTTGTTGAAT+TGG | + | chr3_3:9575155-9575174 | Msa0441180:CDS | 40.0% |
| CACGAACTTGAGATTGAGAA+AGG | - | chr3_3:9575286-9575305 | None:intergenic | 40.0% | |
| TTCATTGAACTCAGCGACAA+AGG | - | chr3_3:9575581-9575600 | None:intergenic | 40.0% | |
| GTGACAGTGCATTTACTTGA+AGG | + | chr3_3:9575752-9575771 | Msa0441180:three_prime_UTR | 40.0% | |
| ! | TAGCTGCTACTTGAAAACAG+TGG | - | chr3_3:9575847-9575866 | None:intergenic | 40.0% |
| GCTATAGTGCTATAGCATAG+CGG | + | chr3_3:9575863-9575882 | Msa0441180:three_prime_UTR | 40.0% | |
| TGACTGTTGTCTTCAGTTGC+AGG | + | chr3_3:9572675-9572694 | Msa0441180:CDS | 45.0% | |
| !! | TGGCTGTTTTCGGTATTCTC+GGG | + | chr3_3:9572752-9572771 | Msa0441180:CDS | 45.0% |
| !!! | CAGTTTTGAGCAGATTCCCT+AGG | - | chr3_3:9573332-9573351 | None:intergenic | 45.0% |
| TAGTCACATGACCGACACTA+GGG | - | chr3_3:9573575-9573594 | None:intergenic | 45.0% | |
| GGTCAAGGTAAAGAATGGTC+TGG | - | chr3_3:9573602-9573621 | None:intergenic | 45.0% | |
| TAGTGCAACAGCCAGATACT+TGG | - | chr3_3:9574089-9574108 | None:intergenic | 45.0% | |
| CTATGCAGCGGTGAATTGAT+AGG | + | chr3_3:9574778-9574797 | Msa0441180:intron | 45.0% | |
| AGTTAGCAGAGACAAGACCA+AGG | + | chr3_3:9574928-9574947 | Msa0441180:CDS | 45.0% | |
| !! | GGCTTGTTATGGGGTATTAG+TGG | + | chr3_3:9575010-9575029 | Msa0441180:CDS | 45.0% |
| CATCTAATCCACACACCAAG+AGG | - | chr3_3:9575103-9575122 | None:intergenic | 45.0% | |
| !! | CTCTTGGTGTGTGGATTAGA+TGG | + | chr3_3:9575101-9575120 | Msa0441180:CDS | 45.0% |
| ! | TGTCTCTGCTGCTTGTATCA+TGG | + | chr3_3:9575204-9575223 | Msa0441180:CDS | 45.0% |
| CTGTGTGCCTATTTGGAGAA+TGG | + | chr3_3:9575687-9575706 | Msa0441180:CDS | 45.0% | |
| !! | GGCTGTTTTCGGTATTCTCG+GGG | + | chr3_3:9572753-9572772 | Msa0441180:CDS | 50.0% |
| CTAGTCACATGACCGACACT+AGG | - | chr3_3:9573576-9573595 | None:intergenic | 50.0% | |
| CTGGCTGTTGCACTAACAAC+TGG | + | chr3_3:9574094-9574113 | Msa0441180:CDS | 50.0% | |
| GGGAGTCTAACAACGTTCAG+CGG | + | chr3_3:9574124-9574143 | Msa0441180:CDS | 50.0% | |
| ACAGAGAGAGAGAGAGAGAG+AGG | + | chr3_3:9574350-9574369 | Msa0441180:intron | 50.0% | |
| CAGAGACAAGACCAAGGCAA+AGG | + | chr3_3:9574934-9574953 | Msa0441180:CDS | 50.0% | |
| AGACAAGACCAAGGCAAAGG+TGG | + | chr3_3:9574937-9574956 | Msa0441180:CDS | 50.0% | |
| AAGACCAAGGCAAAGGTGGA+AGG | + | chr3_3:9574941-9574960 | Msa0441180:CDS | 50.0% | |
| CTGTGGATCGCTTGCATTGT+TGG | + | chr3_3:9575076-9575095 | Msa0441180:CDS | 50.0% | |
| GCTTGCATTGTTGGACCTCT+TGG | + | chr3_3:9575085-9575104 | Msa0441180:CDS | 50.0% | |
| ! | TTGTTGGACCTCTTGGTGTG+TGG | + | chr3_3:9575092-9575111 | Msa0441180:CDS | 50.0% |
| ! | GGACATGGTTTAGGACCAAG+AGG | + | chr3_3:9575142-9575161 | Msa0441180:CDS | 50.0% |
| AGGCATACAGTTTGGCCTGT+TGG | + | chr3_3:9575534-9575553 | Msa0441180:CDS | 50.0% | |
| GGCATACAGTTTGGCCTGTT+GGG | + | chr3_3:9575535-9575554 | Msa0441180:CDS | 50.0% | |
| CAGTACTCAAACAGCCCAAC+AGG | - | chr3_3:9575552-9575571 | None:intergenic | 50.0% | |
| AGAGAGGAACGAGCGAGGAA+GGG | - | chr3_3:9573653-9573672 | None:intergenic | 55.0% | |
| GTCTAACAACGTTCAGCGGC+TGG | + | chr3_3:9574128-9574147 | Msa0441180:CDS | 55.0% | |
| GAAGCCTTCCACCTTTGCCT+TGG | - | chr3_3:9574948-9574967 | None:intergenic | 55.0% | |
| TGAGAGAAAGCGAGCACCCT+TGG | + | chr3_3:9575602-9575621 | Msa0441180:CDS | 55.0% | |
| GAGAGAGGAACGAGCGAGGA+AGG | - | chr3_3:9573654-9573673 | None:intergenic | 60.0% | |
| CAGAGAGAGAGGAACGAGCG+AGG | - | chr3_3:9573658-9573677 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 9572658 | 9575912 | 9572658 | ID=Msa0441180;Name=Msa0441180 |
| chr3_3 | mRNA | 9572658 | 9575912 | 9572658 | ID=Msa0441180-mRNA-1;Parent=Msa0441180;Name=Msa0441180-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|1|0.8|1|0.75|0.6|5|192|349 |
| chr3_3 | exon | 9572658 | 9572774 | 9572658 | ID=Msa0441180-mRNA-1:exon:1956;Parent=Msa0441180-mRNA-1 |
| chr3_3 | exon | 9573537 | 9573635 | 9573537 | ID=Msa0441180-mRNA-1:exon:1957;Parent=Msa0441180-mRNA-1 |
| chr3_3 | exon | 9574025 | 9574217 | 9574025 | ID=Msa0441180-mRNA-1:exon:1958;Parent=Msa0441180-mRNA-1 |
| chr3_3 | exon | 9574831 | 9575252 | 9574831 | ID=Msa0441180-mRNA-1:exon:1959;Parent=Msa0441180-mRNA-1 |
| chr3_3 | exon | 9575502 | 9575912 | 9575502 | ID=Msa0441180-mRNA-1:exon:1960;Parent=Msa0441180-mRNA-1 |
| chr3_3 | CDS | 9572658 | 9572774 | 9572658 | ID=Msa0441180-mRNA-1:cds;Parent=Msa0441180-mRNA-1 |
| chr3_3 | CDS | 9573537 | 9573635 | 9573537 | ID=Msa0441180-mRNA-1:cds;Parent=Msa0441180-mRNA-1 |
| chr3_3 | CDS | 9574025 | 9574217 | 9574025 | ID=Msa0441180-mRNA-1:cds;Parent=Msa0441180-mRNA-1 |
| chr3_3 | CDS | 9574831 | 9575252 | 9574831 | ID=Msa0441180-mRNA-1:cds;Parent=Msa0441180-mRNA-1 |
| chr3_3 | CDS | 9575502 | 9575720 | 9575502 | ID=Msa0441180-mRNA-1:cds;Parent=Msa0441180-mRNA-1 |
| chr3_3 | three_prime_UTR | 9575721 | 9575912 | 9575721 | ID=Msa0441180-mRNA-1:three_prime_utr;Parent=Msa0441180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
